FFCP PHASE1:Hg19::chr17:46675619..46675642,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3216|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=5117|TSSclassifier=S|UniProt=P17509|association_with_transcript=438bp_to_uc002int.1_5end|description=CAGE_peak_5_at_HOXB6_5end|id=chr17:46675619..46675642,-|ontology_enrichment_celltype=CL:1000449!8.07e-14!16;CL:1000497!3.13e-13!18;CL:0002518!3.13e-13!18;CL:0002681!8.59e-12!13;CL:0002584!8.59e-12!13;CL:1000507!4.92e-11!12;CL:1000494!4.92e-11!12|ontology_enrichment_celltype_v019=CL:1000449;8.27e-19;15!CL:0002681;5.10e-17;12!CL:0002584;5.10e-17;12!CL:1000497;3.04e-16;17!CL:0002518;3.04e-16;17!CL:1000507;2.50e-13;10!CL:1000494;2.50e-13;10!CL:0000239;8.76e-08;3!CL:1000615;8.76e-08;3!CL:0002306;8.76e-08;3!CL:1000746;1.88e-07;7!CL:1000612;1.88e-07;7!CL:0002188;4.15e-07;5!CL:0002564;5.08e-07;3|ontology_enrichment_celltype_v019_2=CL:1000449,5.95e-19,15;CL:0002681,4.29e-17,12;CL:0002584,4.29e-17,12;CL:1000497,2.29e-16,17;CL:0002518,2.29e-16,17;CL:1000507,1.94e-13,10;CL:1000494,1.94e-13,10;CL:0000239,8.64e-08,3;CL:1000615,8.64e-08,3;CL:0002306,8.64e-08,3;CL:1000746,1.54e-07,7;CL:1000612,1.54e-07,7;CL:0002188,3.85e-07,5;CL:0002564,7.76e-07,3;CL:0002149,9.82e-07,6;CL:0002255,9.82e-07,6|ontology_enrichment_development_v019=UBERON:0006241;1.20e-08;3!UBERON:0003057;1.20e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:3001,9.82e-07,6|ontology_enrichment_uberon=UBERON:0000489!7.10e-18!32;UBERON:0000080!1.22e-15!18;UBERON:0002120!1.22e-15!18;UBERON:0004875!1.22e-15!18;UBERON:0005721!1.22e-15!18;UBERON:0005754!1.22e-15!18;UBERON:0007297!1.22e-15!18;UBERON:0003887!1.71e-15!21;UBERON:0000058!7.48e-15!26;UBERON:0002100!8.11e-15!216;UBERON:0002113!8.36e-15!27;UBERON:0003918!8.36e-15!27;UBERON:0005095!8.36e-15!27;UBERON:0007687!8.36e-15!27;UBERON:0006554!9.21e-15!44;UBERON:0006555!9.75e-15!17;UBERON:0005103!9.75e-15!17;UBERON:0000083!9.75e-15!17;UBERON:0009201!9.75e-15!17;UBERON:0004819!9.75e-15!17;UBERON:0006553!9.75e-15!17;UBERON:0003074!9.75e-15!17;UBERON:0003060!9.75e-15!17;UBERON:0001008!3.73e-14!45;UBERON:0004211!8.07e-14!16;UBERON:0001285!8.07e-14!16;UBERON:0007684!8.07e-14!16;UBERON:0003220!8.07e-14!16;UBERON:0004208!8.07e-14!16;UBERON:0004876!2.56e-13!20;UBERON:0005177!5.03e-13!107;UBERON:0001225!8.59e-12!13;UBERON:0008987!8.59e-12!13;UBERON:0009773!4.92e-11!12;UBERON:0001231!4.92e-11!12;UBERON:0004810!4.92e-11!12;UBERON:0000353!8.50e-11!17;UBERON:0009569!1.00e-10!113;UBERON:0002417!6.66e-10!61;UBERON:0000916!6.66e-10!61;UBERON:0005172!9.96e-10!55;UBERON:0005173!9.96e-10!55;UBERON:0003104!2.03e-09!238;UBERON:0009142!2.03e-09!238;UBERON:0005256!2.95e-09!143;UBERON:0000466!4.63e-09!126;UBERON:0003064!9.55e-09!37;UBERON:0000464!1.21e-08!104;UBERON:0001851!1.22e-08!16;UBERON:0003886!1.24e-08!63;UBERON:0003914!7.64e-08!118;UBERON:0002553!3.48e-07!70|ontology_enrichment_uberon_v019=UBERON:0000489;2.82e-21;29!UBERON:0006555;8.27e-19;15!UBERON:0004819;8.27e-19;15!UBERON:0001285;8.27e-19;15!UBERON:0007684;8.27e-19;15!UBERON:0002113;1.54e-17;24!UBERON:0011143;1.54e-17;24!UBERON:0001225;5.10e-17;12!UBERON:0008987;5.10e-17;12!UBERON:0000353;7.64e-16;15!UBERON:0006554;3.93e-15;30!UBERON:0001008;3.93e-15;30!UBERON:0004211;2.50e-13;10!UBERON:0009773;2.50e-13;10!UBERON:0001231;2.50e-13;10!UBERON:0004810;2.50e-13;10!UBERON:0001851;3.73e-13;15!UBERON:0002240;1.20e-08;3!UBERON:0005174;1.20e-08;3!UBERON:0001137;1.20e-08;3!UBERON:0000058;3.47e-08;10!UBERON:0006947;3.76e-08;3!UBERON:0004054;3.76e-08;3!UBERON:0006853;8.76e-08;3!UBERON:0007685;8.76e-08;3!UBERON:0004134;8.76e-08;3!UBERON:0000074;1.88e-07;7!UBERON:0001229;1.88e-07;7!UBERON:0005172;4.24e-07;52!UBERON:0005173;4.24e-07;52!UBERON:0002242;5.08e-07;3!UBERON:0011135;5.64e-07;5!UBERON:0002216;5.64e-07;5!UBERON:0011134;5.64e-07;5!UBERON:0002209;5.64e-07;5!UBERON:0002213;5.64e-07;5!UBERON:0007844;5.64e-07;5!UBERON:0011138;5.64e-07;5!UBERON:0001130;5.64e-07;5!UBERON:0001066;5.64e-07;5!UBERON:0001468;5.64e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0000489,6.43e-25,31;UBERON:0002113,3.72e-21,26;UBERON:0003918,3.72e-21,26;UBERON:0011143,3.72e-21,26;UBERON:0005095,3.72e-21,26;UBERON:0007687,3.72e-21,26;UBERON:0006555,5.75e-21,16;UBERON:0004819,5.75e-21,16;UBERON:0004211,5.95e-19,15;UBERON:0009773,5.95e-19,15;UBERON:0001231,5.95e-19,15;UBERON:0001285,5.95e-19,15;UBERON:0007684,5.95e-19,15;UBERON:0004208,5.95e-19,15;UBERON:0001225,4.29e-17,12;UBERON:0008987,4.29e-17,12;UBERON:0000353,6.80e-16,15;UBERON:0000058,1.04e-14,19;UBERON:0004810,1.94e-13,10;UBERON:0001851,3.26e-13,15;UBERON:0005172,1.76e-12,54;UBERON:0005173,1.76e-12,54;UBERON:0006554,2.51e-12,47;UBERON:0001008,5.78e-12,48;UBERON:0002417,7.24e-12,60;UBERON:0000916,7.24e-12,60;UBERON:0005177,9.39e-12,101;UBERON:0000080,2.32e-11,9;UBERON:0002120,2.32e-11,9;UBERON:0004875,2.32e-11,9;UBERON:0005721,2.32e-11,9;UBERON:0005754,2.32e-11,9;UBERON:0007297,2.32e-11,9;UBERON:0009569,9.26e-11,112;UBERON:0003887,1.96e-10,12;UBERON:0005103,1.94e-09,8;UBERON:000008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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3216 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5117 | |||
|TSSclassifier=S | |||
|UniProt=P17509 | |||
|association_with_transcript=438bp_to_uc002int.1_5end | |||
|description=CAGE_peak_5_at_HOXB6_5end | |||
|id=chr17:46675619..46675642,- | |||
|ontology_enrichment_celltype=CL:1000449!8.07e-14!16;CL:1000497!3.13e-13!18;CL:0002518!3.13e-13!18;CL:0002681!8.59e-12!13;CL:0002584!8.59e-12!13;CL:1000507!4.92e-11!12;CL:1000494!4.92e-11!12 | |||
|ontology_enrichment_celltype_v019=CL:1000449;8.27e-19;15!CL:0002681;5.10e-17;12!CL:0002584;5.10e-17;12!CL:1000497;3.04e-16;17!CL:0002518;3.04e-16;17!CL:1000507;2.50e-13;10!CL:1000494;2.50e-13;10!CL:0000239;8.76e-08;3!CL:1000615;8.76e-08;3!CL:0002306;8.76e-08;3!CL:1000746;1.88e-07;7!CL:1000612;1.88e-07;7!CL:0002188;4.15e-07;5!CL:0002564;5.08e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,5.95e-19,15;CL:0002681,4.29e-17,12;CL:0002584,4.29e-17,12;CL:1000497,2.29e-16,17;CL:0002518,2.29e-16,17;CL:1000507,1.94e-13,10;CL:1000494,1.94e-13,10;CL:0000239,8.64e-08,3;CL:1000615,8.64e-08,3;CL:0002306,8.64e-08,3;CL:1000746,1.54e-07,7;CL:1000612,1.54e-07,7;CL:0002188,3.85e-07,5;CL:0002564,7.76e-07,3;CL:0002149,9.82e-07,6;CL:0002255,9.82e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.20e-08;3!UBERON:0003057;1.20e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3001,9.82e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000489!7.10e-18!32;UBERON:0000080!1.22e-15!18;UBERON:0002120!1.22e-15!18;UBERON:0004875!1.22e-15!18;UBERON:0005721!1.22e-15!18;UBERON:0005754!1.22e-15!18;UBERON:0007297!1.22e-15!18;UBERON:0003887!1.71e-15!21;UBERON:0000058!7.48e-15!26;UBERON:0002100!8.11e-15!216;UBERON:0002113!8.36e-15!27;UBERON:0003918!8.36e-15!27;UBERON:0005095!8.36e-15!27;UBERON:0007687!8.36e-15!27;UBERON:0006554!9.21e-15!44;UBERON:0006555!9.75e-15!17;UBERON:0005103!9.75e-15!17;UBERON:0000083!9.75e-15!17;UBERON:0009201!9.75e-15!17;UBERON:0004819!9.75e-15!17;UBERON:0006553!9.75e-15!17;UBERON:0003074!9.75e-15!17;UBERON:0003060!9.75e-15!17;UBERON:0001008!3.73e-14!45;UBERON:0004211!8.07e-14!16;UBERON:0001285!8.07e-14!16;UBERON:0007684!8.07e-14!16;UBERON:0003220!8.07e-14!16;UBERON:0004208!8.07e-14!16;UBERON:0004876!2.56e-13!20;UBERON:0005177!5.03e-13!107;UBERON:0001225!8.59e-12!13;UBERON:0008987!8.59e-12!13;UBERON:0009773!4.92e-11!12;UBERON:0001231!4.92e-11!12;UBERON:0004810!4.92e-11!12;UBERON:0000353!8.50e-11!17;UBERON:0009569!1.00e-10!113;UBERON:0002417!6.66e-10!61;UBERON:0000916!6.66e-10!61;UBERON:0005172!9.96e-10!55;UBERON:0005173!9.96e-10!55;UBERON:0003104!2.03e-09!238;UBERON:0009142!2.03e-09!238;UBERON:0005256!2.95e-09!143;UBERON:0000466!4.63e-09!126;UBERON:0003064!9.55e-09!37;UBERON:0000464!1.21e-08!104;UBERON:0001851!1.22e-08!16;UBERON:0003886!1.24e-08!63;UBERON:0003914!7.64e-08!118;UBERON:0002553!3.48e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;2.82e-21;29!UBERON:0006555;8.27e-19;15!UBERON:0004819;8.27e-19;15!UBERON:0001285;8.27e-19;15!UBERON:0007684;8.27e-19;15!UBERON:0002113;1.54e-17;24!UBERON:0011143;1.54e-17;24!UBERON:0001225;5.10e-17;12!UBERON:0008987;5.10e-17;12!UBERON:0000353;7.64e-16;15!UBERON:0006554;3.93e-15;30!UBERON:0001008;3.93e-15;30!UBERON:0004211;2.50e-13;10!UBERON:0009773;2.50e-13;10!UBERON:0001231;2.50e-13;10!UBERON:0004810;2.50e-13;10!UBERON:0001851;3.73e-13;15!UBERON:0002240;1.20e-08;3!UBERON:0005174;1.20e-08;3!UBERON:0001137;1.20e-08;3!UBERON:0000058;3.47e-08;10!UBERON:0006947;3.76e-08;3!UBERON:0004054;3.76e-08;3!UBERON:0006853;8.76e-08;3!UBERON:0007685;8.76e-08;3!UBERON:0004134;8.76e-08;3!UBERON:0000074;1.88e-07;7!UBERON:0001229;1.88e-07;7!UBERON:0005172;4.24e-07;52!UBERON:0005173;4.24e-07;52!UBERON:0002242;5.08e-07;3!UBERON:0011135;5.64e-07;5!UBERON:0002216;5.64e-07;5!UBERON:0011134;5.64e-07;5!UBERON:0002209;5.64e-07;5!UBERON:0002213;5.64e-07;5!UBERON:0007844;5.64e-07;5!UBERON:0011138;5.64e-07;5!UBERON:0001130;5.64e-07;5!UBERON:0001066;5.64e-07;5!UBERON:0001468;5.64e-07;5 | |||
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| |||
|short_description=p5@HOXB6 | |||
}} |
Revision as of 14:16, 11 September 2013
Short description: | p5@HOXB6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_HOXB6_5end |
Coexpression cluster: | NA |
Association with transcript: | 438bp_to_uc002int.1_5end |
EntrezGene: | HOXB6 |
HGNC: | 5117 |
UniProt: | P17509 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 5.95e-19 | 15 |
kidney cortical cell | 4.29e-17 | 12 |
renal cortical epithelial cell | 4.29e-17 | 12 |
kidney cell | 2.29e-16 | 17 |
kidney epithelial cell | 2.29e-16 | 17 |
kidney tubule cell | 1.94e-13 | 10 |
nephron tubule epithelial cell | 1.94e-13 | 10 |
brush border epithelial cell | 8.64e-08 | 3 |
kidney cortex tubule cell | 8.64e-08 | 3 |
epithelial cell of proximal tubule | 8.64e-08 | 3 |
glomerular cell | 1.54e-07 | 7 |
kidney corpuscule cell | 1.54e-07 | 7 |
glomerular endothelial cell | 3.85e-07 | 5 |
nucleus pulposus cell of intervertebral disc | 7.76e-07 | 3 |
epithelial cell of uterus | 9.82e-07 | 6 |
stromal cell of endometrium | 9.82e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 9.82e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.