UBERON:0001225

Name:	cortex of kidney
Namespace:	FANTOM
Definition:	"Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Renal_cortex]
Xrefs:	Expandlinks: BTO:0001166 EHDAA:9332 EMAPA:17952 FMA:15581 GAID:424 galen:CortexOfKidney [1] [2] MA:0000372 MESH:A.05.810.453.324 ncithesaurus:Renal_Cortex SCTID:362211004
Synonyms:	"cortex renalis" EXACT [FMA:15581, FMA:TA] "kidney cortex" EXACT [] "renal cortex" EXACT []
Alt_id:	UBERON:FMA_15581-MA_0000372
Subset:	uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0001851(cortex),UBERON:0006554(urinary system structure)
part_of:	UBERON:0002113(kidney),UBERON:0008987(renal parenchyma)

Children

part of:	UBERON:0001229 (renal corpuscle),UBERON:0002303 (juxtaglomerular apparatus),CL:0002584 (renal cortical epithelial cell),CL:0002681 (kidney cortical cell),UBERON:0004134 (proximal tubule),UBERON:0006853 (renal cortex tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
• 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
• 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
• 11518-119H6 (Renal Mesangial Cells, donor1)
• 11590-120G6 (Alveolar Epithelial Cells, donor2)
• 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
• 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
• 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
• 11598-120H5 (Renal Mesangial Cells, donor2)
• 11675-122H1 (Renal Glomerular Endothelial Cells, donor3)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001225 (cortex of kidney), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
4.8e-58	FFCP PHASE2:Hg19::chr2:693380..693398,+	p@chr2:693380..693398, +
4.8e-58	FFCP PHASE1:Hg19::chr2:693380..693398,+	p@chr2:693380..693398, +
4.05e-52	FFCP PHASE2:Hg19::chr7:27219833..27219845,-	p7@HOXA10
4.05e-52	FFCP PHASE1:Hg19::chr7:27219833..27219845,-	p7@HOXA10
1.06e-50	FFCP PHASE2:Hg19::chr5:74244100..74244117,+	p@chr5:74244100..74244117, +
1.06e-50	FFCP PHASE1:Hg19::chr5:74244100..74244117,+	p@chr5:74244100..74244117, +
5.59e-50	FFCP PHASE2:Hg19::chr1:20465872..20465881,+	p2@PLA2G2F
5.59e-50	FFCP PHASE1:Hg19::chr1:20465872..20465881,+	p2@PLA2G2F
6.11e-42	FFCP PHASE2:Hg19::chr16:86768403..86768437,+	p@chr16:86768403..86768437, +
6.11e-42	FFCP PHASE1:Hg19::chr16:86768403..86768437,+	p@chr16:86768403..86768437, +
3.58e-41	FFCP PHASE1:Hg19::chr15:66420804..66420837,-	p4@MEGF11
3.58e-41	FFCP PHASE2:Hg19::chr15:66420804..66420837,-	p4@MEGF11
1.0e-40	FFCP PHASE2:Hg19::chr1:94713418..94713436,+	p1@ENST00000413103
1.0e-40	FFCP PHASE1:Hg19::chr1:94713418..94713436,+	p1@ENST00000413103
6.83e-40	FFCP PHASE2:Hg19::chr7:140227303..140227330,-	p@chr7:140227303..140227330, -
6.83e-40	FFCP PHASE1:Hg19::chr7:140227303..140227330,-	p@chr7:140227303..140227330, -
9.22e-40	FFCP PHASE2:Hg19::chr10:102505954..102505973,+	p3@PAX2
9.22e-40	FFCP PHASE1:Hg19::chr10:102505954..102505973,+	p3@PAX2
1.79e-39	FFCP PHASE2:Hg19::chr18:3456189..3456200,+	p@chr18:3456189..3456200, +
1.79e-39	FFCP PHASE1:Hg19::chr18:3456189..3456200,+	p@chr18:3456189..3456200, +
4.5e-38	FFCP PHASE1:Hg19::chr6:30890456..30890482,+	p11@VARS2
4.5e-38	FFCP PHASE2:Hg19::chr6:30890456..30890482,+	p11@VARS2
8.61e-38	FFCP PHASE2:Hg19::chr2:120409486..120409492,+	p@chr2:120409486..120409492, +
8.61e-38	FFCP PHASE1:Hg19::chr2:120409486..120409492,+	p@chr2:120409486..120409492, +
5.07e-37	FFCP PHASE1:Hg19::chr20:6033532..6033548,-	p2@AB527789
5.07e-37	FFCP PHASE2:Hg19::chr20:6033532..6033548,-	p2@AB527789
6.37e-37	FFCP PHASE2:Hg19::chr1:1100457..1100470,+	p@chr1:1100457..1100470, +
6.37e-37	FFCP PHASE1:Hg19::chr1:1100457..1100470,+	p@chr1:1100457..1100470, +
1.63e-36	FFCP PHASE2:Hg19::chr20:6034607..6034616,-	p6@LRRN4
1.63e-36	FFCP PHASE1:Hg19::chr20:6034607..6034616,-	p6@LRRN4
2.81e-35	FFCP PHASE2:Hg19::chr17:36104873..36104903,-	p3@HNF1B
2.81e-35	FFCP PHASE1:Hg19::chr17:36104873..36104903,-	p3@HNF1B
4.37e-35	FFCP PHASE2:Hg19::chr9:133986782..133986794,+	p4@AIF1L
4.37e-35	FFCP PHASE1:Hg19::chr9:133986782..133986794,+	p4@AIF1L
1.19e-34	FFCP PHASE1:Hg19::chr10:102495147..102495159,+	p4@PAX2
1.19e-34	FFCP PHASE2:Hg19::chr10:102495147..102495159,+	p4@PAX2
5.98e-34	FFCP PHASE2:Hg19::chr5:167718782..167718785,+	p10@WWC1
5.98e-34	FFCP PHASE1:Hg19::chr5:167718782..167718785,+	p10@WWC1
2.93e-33	FFCP PHASE1:Hg19::chr20:6034672..6034714,-	p2@LRRN4
2.93e-33	FFCP PHASE2:Hg19::chr20:6034672..6034714,-	p2@LRRN4
1.44e-32	FFCP PHASE2:Hg19::chr16:3068288..3068312,-	p2@CLDN6
1.44e-32	FFCP PHASE1:Hg19::chr16:3068288..3068312,-	p2@CLDN6
1.85e-32	FFCP PHASE2:Hg19::chr20:6034828..6034857,-	p5@LRRN4
1.85e-32	FFCP PHASE1:Hg19::chr20:6034828..6034857,-	p5@LRRN4
4.69e-32	FFCP PHASE2:Hg19::chr7:140227349..140227360,-	p@chr7:140227349..140227360, -
4.69e-32	FFCP PHASE1:Hg19::chr7:140227349..140227360,-	p@chr7:140227349..140227360, -
1.23e-31	FFCP PHASE2:Hg19::chr17:27970385..27970397,-	p@chr17:27970385..27970397, -
1.23e-31	FFCP PHASE1:Hg19::chr17:27970385..27970397,-	p@chr17:27970385..27970397, -
2.99e-30	FFCP PHASE1:Hg19::chr15:85403302..85403304,+	p@chr15:85403302..85403304, +
2.99e-30	FFCP PHASE2:Hg19::chr15:85403302..85403304,+	p@chr15:85403302..85403304, +
3.02e-30	FFCP PHASE2:Hg19::chr21:41029235..41029269,+	p2@B3GALT5
3.02e-30	FFCP PHASE1:Hg19::chr21:41029235..41029269,+	p2@B3GALT5
1.06e-29	FFCP PHASE2:Hg19::chr19:50390837..50390847,+	p@chr19:50390837..50390847, +
1.06e-29	FFCP PHASE1:Hg19::chr19:50390837..50390847,+	p@chr19:50390837..50390847, +
1.26e-29	FFCP PHASE2:Hg19::chr20:6034576..6034592,-	p3@LRRN4
1.26e-29	FFCP PHASE1:Hg19::chr20:6034576..6034592,-	p3@LRRN4
1.54e-29	FFCP PHASE2:Hg19::chr17:171147..171161,+	p@chr17:171147..171161, +
1.54e-29	FFCP PHASE1:Hg19::chr17:171147..171161,+	p@chr17:171147..171161, +
3.11e-29	FFCP PHASE1:Hg19::chr21:46826248..46826282,-	p@chr21:46826248..46826282, -
3.11e-29	FFCP PHASE2:Hg19::chr21:46826248..46826282,-	p@chr21:46826248..46826282, -
4.34e-29	FFCP PHASE2:Hg19::chr1:81001398..81001426,+	p1@ENST00000418041, p1@ENST00000443104
4.34e-29	FFCP PHASE1:Hg19::chr1:81001398..81001426,+	p1@ENST00000418041, p1@ENST00000443104
1.58e-28	FFCP PHASE1:Hg19::chr9:133986807..133986821,+	p3@AIF1L
1.58e-28	FFCP PHASE2:Hg19::chr9:133986807..133986821,+	p3@AIF1L
2.94e-28	FFCP PHASE1:Hg19::chr7:7606139..7606151,-	p@chr7:7606139..7606151, -
2.94e-28	FFCP PHASE2:Hg19::chr7:7606139..7606151,-	p@chr7:7606139..7606151, -
6.08e-28	FFCP PHASE1:Hg19::chr10:91043420..91043437,+	p1@ENST00000444849
6.08e-28	FFCP PHASE2:Hg19::chr10:91043420..91043437,+	p1@ENST00000444849
1.11e-27	FFCP PHASE1:Hg19::chr10:102505493..102505546,+	p2@PAX2
1.11e-27	FFCP PHASE2:Hg19::chr10:102505493..102505546,+	p2@PAX2
2.09e-27	FFCP PHASE1:Hg19::chr9:71735910..71735923,+	p16@TJP2
2.09e-27	FFCP PHASE2:Hg19::chr9:71735910..71735923,+	p16@TJP2
2.35e-27	FFCP PHASE1:Hg19::chr16:86604624..86604648,+	p@chr16:86604624..86604648, +
2.35e-27	FFCP PHASE2:Hg19::chr16:86604624..86604648,+	p@chr16:86604624..86604648, +
3.45e-27	FFCP PHASE2:Hg19::chr20:6034598..6034603,-	p7@LRRN4
3.45e-27	FFCP PHASE1:Hg19::chr20:6034598..6034603,-	p7@LRRN4
7.25e-27	FFCP PHASE2:Hg19::chr17:171082..171101,+	p@chr17:171082..171101, +
7.25e-27	FFCP PHASE1:Hg19::chr17:171082..171101,+	p@chr17:171082..171101, +
4.96e-26	FFCP PHASE2:Hg19::chr20:6033140..6033181,-	p1@AB527789
4.96e-26	FFCP PHASE1:Hg19::chr20:6033140..6033181,-	p1@AB527789
7.1e-26	FFCP PHASE2:Hg19::chr2:108994633..108994650,+	p4@SULT1C4
7.1e-26	FFCP PHASE1:Hg19::chr2:108994633..108994650,+	p4@SULT1C4
9.68e-25	FFCP PHASE2:Hg19::chr6:24358114..24358125,-	p4@DCDC2
9.68e-25	FFCP PHASE1:Hg19::chr6:24358114..24358125,-	p4@DCDC2
1.6e-24	FFCP PHASE2:Hg19::chr7:27219754..27219759,-	p16@HOXA10
1.6e-24	FFCP PHASE2:Hg19::chr2:177053683..177053697,-	p1@LOC401022
1.6e-24	FFCP PHASE1:Hg19::chr7:27219754..27219759,-	p16@HOXA10
1.6e-24	FFCP PHASE1:Hg19::chr2:177053683..177053697,-	p1@LOC401022
1.66e-24	FFCP PHASE2:Hg19::chr22:37823036..37823049,-	p1@ENST00000451509
1.66e-24	FFCP PHASE1:Hg19::chr22:37823036..37823049,-	p1@ENST00000451509
1.87e-24	FFCP PHASE2:Hg19::chr17:46675539..46675551,-	p7@HOXB6
1.87e-24	FFCP PHASE1:Hg19::chr17:46675539..46675551,-	p7@HOXB6
2.63e-24	FFCP PHASE2:Hg19::chr13:26619917..26619921,-	p@chr13:26619917..26619921, -
2.63e-24	FFCP PHASE1:Hg19::chr13:26619917..26619921,-	p@chr13:26619917..26619921, -
2.91e-24	FFCP PHASE2:Hg19::chr2:177016336..177016350,+	p1@HOXD4
2.91e-24	FFCP PHASE1:Hg19::chr2:177016336..177016350,+	p1@HOXD4
2.98e-24	FFCP PHASE1:Hg19::chr7:98453821..98453843,-	p@chr7:98453821..98453843, -
2.98e-24	FFCP PHASE2:Hg19::chr7:98453821..98453843,-	p@chr7:98453821..98453843, -
3.49e-24	FFCP PHASE1:Hg19::chr12:6485243..6485254,-	p18@SCNN1A
3.49e-24	FFCP PHASE2:Hg19::chr12:6485243..6485254,-	p18@SCNN1A

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