UBERON:0004880

Name:	chordamesoderm
Namespace:	FANTOM
Definition:	"The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm]
Xrefs:	Expandlinks: AAO:0000478 chordamesoderm:[1] EFO:0003426 TAO:0000091 ZFA:0000091
Synonyms:	"axial chorda mesoderm" EXACT [ZFA:0000091] "chorda mesoderm" EXACT [] "dorsal mesoderm" EXACT [UBERONREF:0000002] "presumptive notochord" EXACT [ZFA:0000091]
Comments:	note that WP treats this as synonym of axial mesoderm

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0005423(developing anatomical structure)
part_of:	UBERON:0000922(embryo),UBERON:0003068(axial mesoderm)

Children

develops from:	UBERON:0002328 (notochord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004880 (chordamesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
8.26e-98	FFCP PHASE1:Hg19::chr3:174737010..174737023,+	p@chr3:174737010..174737023, +
8.26e-98	FFCP PHASE2:Hg19::chr3:174737010..174737023,+	p@chr3:174737010..174737023, +
3.03e-84	FFCP PHASE1:Hg19::chr20:21687193..21687206,+	p4@PAX1
3.03e-84	FFCP PHASE2:Hg19::chr20:21687193..21687206,+	p4@PAX1
2.39e-66	FFCP PHASE2:Hg19::chr9:33028063..33028067,-	p@chr9:33028063..33028067, -
2.39e-66	FFCP PHASE1:Hg19::chr9:33028063..33028067,-	p@chr9:33028063..33028067, -
5.46e-60	FFCP PHASE1:Hg19::chr5:30104176..30104187,-	p@chr5:30104176..30104187, -
5.46e-60	FFCP PHASE2:Hg19::chr5:30104176..30104187,-	p@chr5:30104176..30104187, -
9.77e-45	FFCP PHASE2:Hg19::chr2:241987807..241987808,+	p22@SNED1
9.77e-45	FFCP PHASE1:Hg19::chr2:241987807..241987808,+	p22@SNED1
6.64e-41	FFCP PHASE1:Hg19::chr2:242004292..242004308,+	p15@SNED1
6.64e-41	FFCP PHASE2:Hg19::chr2:242004292..242004308,+	p15@SNED1
1.31e-40	FFCP PHASE2:Hg19::chr1:19811132..19811155,-	p20@CAPZB
1.31e-40	FFCP PHASE1:Hg19::chr1:19811132..19811155,-	p20@CAPZB
1.8e-38	FFCP PHASE2:Hg19::chr2:12248310..12248334,-	p@chr2:12248310..12248334, -
1.8e-38	FFCP PHASE1:Hg19::chr2:12248310..12248334,-	p@chr2:12248310..12248334, -
2.75e-34	FFCP PHASE2:Hg19::chr14:61190754..61190776,-	p6@SIX4
2.75e-34	FFCP PHASE1:Hg19::chr14:61190754..61190776,-	p6@SIX4
5.96e-34	FFCP PHASE2:Hg19::chr4:88727274..88727278,+	p@chr4:88727274..88727278, +
5.96e-34	FFCP PHASE2:Hg19::chr11:93468399..93468405,-	p19@TAF1D, p1@SNORA40
5.96e-34	FFCP PHASE1:Hg19::chr13:51101468..51101499,-	p1@ENST00000428276
5.96e-34	FFCP PHASE1:Hg19::chr4:88727274..88727278,+	p@chr4:88727274..88727278, +
5.96e-34	FFCP PHASE1:Hg19::chr11:93468399..93468405,-	p19@TAF1D, p1@SNORA40
5.96e-34	FFCP PHASE2:Hg19::chr13:51101468..51101499,-	p1@ENST00000428276
2.09e-33	FFCP PHASE1:Hg19::chr4:13546130..13546145,-	p4@NKX3-2
2.09e-33	FFCP PHASE2:Hg19::chr4:13546130..13546145,-	p4@NKX3-2
4.01e-31	FFCP PHASE1:Hg19::chr7:18832913..18832946,+	p19@HDAC9
4.01e-31	FFCP PHASE2:Hg19::chr7:18832913..18832946,+	p19@HDAC9
1.98e-30	FFCP PHASE2:Hg19::chr2:241897125..241897142,-	p@chr2:241897125..241897142, -
1.98e-30	FFCP PHASE1:Hg19::chr2:241897125..241897142,-	p@chr2:241897125..241897142, -
4.84e-30	FFCP PHASE2:Hg19::chr3:80727046..80727051,-	p@chr3:80727046..80727051, -
4.84e-30	FFCP PHASE1:Hg19::chr3:80727046..80727051,-	p@chr3:80727046..80727051, -
7.46e-30	FFCP PHASE2:Hg19::chr7:158224707..158224729,-	p@chr7:158224707..158224729, -
7.46e-30	FFCP PHASE1:Hg19::chr7:158224707..158224729,-	p@chr7:158224707..158224729, -
1.48e-29	FFCP PHASE1:Hg19::chr1:65888177..65888194,+	p@chr1:65888177..65888194, +
1.48e-29	FFCP PHASE2:Hg19::chr1:65888177..65888194,+	p@chr1:65888177..65888194, +
2.72e-28	FFCP PHASE2:Hg19::chr14:100848311..100848321,+	p5@WDR25
2.72e-28	FFCP PHASE1:Hg19::chr14:100848311..100848321,+	p5@WDR25
3.26e-27	FFCP PHASE1:Hg19::chr1:78695274..78695292,+	p1@MGC27382
3.26e-27	FFCP PHASE2:Hg19::chr1:78695274..78695292,+	p1@MGC27382
6.92e-27	FFCP PHASE2:Hg19::chr1:19778678..19778689,-	p@chr1:19778678..19778689, -
6.92e-27	FFCP PHASE1:Hg19::chr1:19778678..19778689,-	p@chr1:19778678..19778689, -
1.46e-26	FFCP PHASE1:Hg19::chr7:18832834..18832859,+	p18@HDAC9
1.46e-26	FFCP PHASE2:Hg19::chr7:18832834..18832859,+	p18@HDAC9
1.74e-26	FFCP PHASE2:Hg19::chr4:156129991..156130013,+	p2@NPY2R
1.74e-26	FFCP PHASE1:Hg19::chr4:156129991..156130013,+	p2@NPY2R
7.41e-26	FFCP PHASE2:Hg19::chr14:61113228..61113233,-	p@chr14:61113228..61113233, -
7.41e-26	FFCP PHASE1:Hg19::chr14:61113228..61113233,-	p@chr14:61113228..61113233, -
2.04e-25	FFCP PHASE2:Hg19::chr7:27212374..27212387,-	p12@HOXA10
2.04e-25	FFCP PHASE1:Hg19::chr7:27212374..27212387,-	p12@HOXA10
6.22e-25	FFCP PHASE1:Hg19::chr14:23574186..23574212,-	p1@uc010aki.1
6.22e-25	FFCP PHASE2:Hg19::chr14:23574186..23574212,-	p1@uc010aki.1
9.49e-25	FFCP PHASE1:Hg19::chr20:21686317..21686350,+	p1@PAX1
9.49e-25	FFCP PHASE2:Hg19::chr20:21686317..21686350,+	p1@PAX1
4.58e-24	FFCP PHASE2:Hg19::chr5:140887761..140887777,+	p@chr5:140887761..140887777, +
4.58e-24	FFCP PHASE1:Hg19::chr5:140887761..140887777,+	p@chr5:140887761..140887777, +
5.35e-24	FFCP PHASE1:Hg19::chr20:21686290..21686311,+	p2@PAX1
5.35e-24	FFCP PHASE2:Hg19::chr20:21686290..21686311,+	p2@PAX1
8.55e-24	FFCP PHASE2:Hg19::chr7:18832759..18832786,+	p16@HDAC9
8.55e-24	FFCP PHASE1:Hg19::chr7:18832759..18832786,+	p16@HDAC9
2.01e-23	FFCP PHASE2:Hg19::chr4:77068930..77068959,-	p4@NUP54
2.01e-23	FFCP PHASE1:Hg19::chr4:77068930..77068959,-	p4@NUP54
2.28e-23	FFCP PHASE2:Hg19::chr4:13546632..13546662,-	p1@NKX3-2
2.28e-23	FFCP PHASE1:Hg19::chr4:13546632..13546662,-	p1@NKX3-2
3.27e-23	FFCP PHASE2:Hg19::chr14:23574164..23574179,-	p3@uc010aki.1
3.27e-23	FFCP PHASE1:Hg19::chr14:23574164..23574179,-	p3@uc010aki.1
1.25e-22	FFCP PHASE2:Hg19::chr1:78695343..78695353,+	p2@ENST00000413519
1.25e-22	FFCP PHASE1:Hg19::chr1:78695343..78695353,+	p2@ENST00000413519
1.46e-22	FFCP PHASE2:Hg19::chr9:123239747..123239765,-	p12@CDK5RAP2
1.46e-22	FFCP PHASE1:Hg19::chr9:123239747..123239765,-	p12@CDK5RAP2
9.47e-22	FFCP PHASE1:Hg19::chr1:171076859..171076870,+	p@chr1:171076859..171076870, +
9.47e-22	FFCP PHASE2:Hg19::chr1:171076859..171076870,+	p@chr1:171076859..171076870, +
1.35e-21	FFCP PHASE2:Hg19::chr7:100202784..100202796,-	p@chr7:100202784..100202796, -
1.35e-21	FFCP PHASE1:Hg19::chr7:100202784..100202796,-	p@chr7:100202784..100202796, -
3.83e-21	FFCP PHASE1:Hg19::chr14:37126814..37126834,+	p4@PAX9
3.83e-21	FFCP PHASE2:Hg19::chr14:37126814..37126834,+	p4@PAX9
4.02e-21	FFCP PHASE2:Hg19::chr3:176765178..176765190,-	p@chr3:176765178..176765190, -
4.02e-21	FFCP PHASE1:Hg19::chr3:176765178..176765190,-	p@chr3:176765178..176765190, -
4.06e-21	FFCP PHASE1:Hg19::chr1:19810947..19810977,-	p17@CAPZB
4.06e-21	FFCP PHASE2:Hg19::chr1:19810947..19810977,-	p17@CAPZB
5.43e-21	FFCP PHASE1:Hg19::chr12:54422268..54422278,+	p8@HOXC6
5.43e-21	FFCP PHASE2:Hg19::chr12:54422268..54422278,+	p8@HOXC6
4.94e-20	FFCP PHASE2:Hg19::chr17:38613285..38613298,-	p@chr17:38613285..38613298, -
4.94e-20	FFCP PHASE1:Hg19::chr17:38613285..38613298,-	p@chr17:38613285..38613298, -
9.53e-20	FFCP PHASE1:Hg19::chr20:43343596..43343608,+	p6@WISP2
9.53e-20	FFCP PHASE2:Hg19::chr20:43343596..43343608,+	p6@WISP2
1.46e-19	FFCP PHASE1:Hg19::chr1:78958320..78958332,+	p2@PTGFR
1.46e-19	FFCP PHASE2:Hg19::chr1:78958320..78958332,+	p2@PTGFR
2.04e-19	FFCP PHASE2:Hg19::chr4:70707689..70707711,-	p@chr4:70707689..70707711, -
2.04e-19	FFCP PHASE1:Hg19::chr4:70707689..70707711,-	p@chr4:70707689..70707711, -
3.75e-19	FFCP PHASE2:Hg19::chr14:37126870..37126882,+	p1@ENST00000555639
3.75e-19	FFCP PHASE1:Hg19::chr14:37126870..37126882,+	p1@ENST00000555639
4.68e-19	FFCP PHASE2:Hg19::chr2:12246664..12246694,+	p1@ENST00000449986
4.68e-19	FFCP PHASE1:Hg19::chr2:12246664..12246694,+	p1@ENST00000449986
1.04e-18	FFCP PHASE2:Hg19::chr3:158390171..158390180,-	p3@LXN
1.04e-18	FFCP PHASE1:Hg19::chr3:158390171..158390180,-	p3@LXN
5.12e-18	FFCP PHASE2:Hg19::chr6:112375300..112375334,+	p1@WISP3
5.12e-18	FFCP PHASE1:Hg19::chr6:112375300..112375334,+	p1@WISP3
9.14e-18	FFCP PHASE2:Hg19::chr8:77595678..77595688,+	p9@ZFHX4
9.14e-18	FFCP PHASE1:Hg19::chr8:77595678..77595688,+	p9@ZFHX4

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