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UBERON:0007685

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Name:region of nephron tubule
Namespace:FANTOM
Xrefs:
links:
FMA:17692
Synonyms: "renal tubule region" EXACT [FMA:17692]
Comments:note - consider moving MA:0000377 renal tubule here, as it includes the various segments (proximal etc) as subclasses, not parts

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001231(nephron tubule),UBERON:0004810(nephron tubule epithelium)
part_of:UBERON:0001231(nephron tubule)



Children

is a:UBERON:0006853 (renal cortex tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007685 (region of nephron tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data