FFCP PHASE1:Hg19::chr22:39640227..39640240,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5155 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=8800 | |||
|TSSclassifier=strong | |||
|UniProt=P01127 | |||
|association_with_transcript=39bp_to_BC029822_5end | |||
|description=CAGE_peak_6_at_PDGFB_5end | |||
|id=chr22:39640227..39640240,- | |||
|ontology_enrichment_celltype=CL:0000066!1.24e-30!254;CL:0000076!4.13e-13!62;CL:0000213!1.53e-12!57;CL:0000215!1.53e-12!57;CL:1000449!3.68e-11!16;CL:1000497!1.05e-10!18;CL:0002518!1.05e-10!18;CL:0002078!1.88e-10!44;CL:1000507!7.91e-10!12;CL:1000494!7.91e-10!12;CL:0000115!1.22e-09!35;CL:0002139!7.20e-09!24;CL:0002681!1.31e-08!13;CL:0002584!1.31e-08!13;CL:0000071!9.21e-07!18;CL:0002546!9.21e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.49e-25;15!CL:1000497;5.60e-22;17!CL:0002518;5.60e-22;17!CL:0002681;4.28e-20;12!CL:0002584;4.28e-20;12!CL:1000507;3.28e-19;10!CL:1000494;3.28e-19;10!CL:1000746;1.73e-14;7!CL:1000612;1.73e-14;7!CL:0000239;3.64e-12;3!CL:1000615;3.64e-12;3!CL:0002306;3.64e-12;3!CL:0002078;9.50e-10;45!CL:0000650;1.72e-09;2!CL:1000500;1.72e-09;2!CL:1000618;1.72e-09;2!CL:1001318;1.72e-09;2!CL:0002173;1.72e-09;2!CL:0000115;7.74e-09;36!CL:0002536;1.13e-08;2!CL:0002188;9.31e-08;5!CL:0000071;4.07e-07;18!CL:1000413;5.41e-07;9!CL:0002139;6.29e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,4.96e-25,15;CL:1000497,7.62e-22,17;CL:0002518,7.62e-22,17;CL:0002681,6.19e-20,12;CL:0002584,6.19e-20,12;CL:1000507,2.07e-19,10;CL:1000494,2.07e-19,10;CL:0000066,4.73e-17,253;CL:1000746,4.05e-14,7;CL:1000612,4.05e-14,7;CL:0002078,1.18e-13,45;CL:0000239,1.94e-12,3;CL:1000615,1.94e-12,3;CL:0002306,1.94e-12,3;CL:0000115,1.01e-10,36;CL:0000650,1.74e-09,2;CL:1000500,1.74e-09,2;CL:1000618,1.74e-09,2;CL:1001318,1.74e-09,2;CL:0002173,1.74e-09,2;CL:0002536,6.59e-09,2;CL:0000213,2.00e-08,58;CL:0000215,2.00e-08,58;CL:0002188,1.86e-07,5;CL:0000071,3.09e-07,18;CL:0002546,3.09e-07,18;CL:0002139,5.65e-07,24;CL:1000413,6.62e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;4.07e-07;18 | |||
|ontology_enrichment_disease=DOID:305!6.03e-10!106;DOID:0050687!5.07e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!5.47e-12!286;UBERON:0006555!1.28e-11!17;UBERON:0005103!1.28e-11!17;UBERON:0000083!1.28e-11!17;UBERON:0009201!1.28e-11!17;UBERON:0004819!1.28e-11!17;UBERON:0006553!1.28e-11!17;UBERON:0003074!1.28e-11!17;UBERON:0003060!1.28e-11!17;UBERON:0000064!1.64e-11!219;UBERON:0006554!1.92e-11!44;UBERON:0004111!3.41e-11!241;UBERON:0004211!3.68e-11!16;UBERON:0001285!3.68e-11!16;UBERON:0007684!3.68e-11!16;UBERON:0003220!3.68e-11!16;UBERON:0004208!3.68e-11!16;UBERON:0000119!3.87e-11!312;UBERON:0001008!6.00e-11!45;UBERON:0000489!6.40e-11!32;UBERON:0000483!1.15e-10!309;UBERON:0000080!1.23e-10!18;UBERON:0002120!1.23e-10!18;UBERON:0004875!1.23e-10!18;UBERON:0005721!1.23e-10!18;UBERON:0005754!1.23e-10!18;UBERON:0007297!1.23e-10!18;UBERON:0005177!1.95e-10!107;UBERON:0003887!2.58e-10!21;UBERON:0000025!2.69e-10!194;UBERON:0002113!5.97e-10!27;UBERON:0003918!5.97e-10!27;UBERON:0005095!5.97e-10!27;UBERON:0007687!5.97e-10!27;UBERON:0009773!7.91e-10!12;UBERON:0001231!7.91e-10!12;UBERON:0004810!7.91e-10!12;UBERON:0004876!5.52e-09!20;UBERON:0003064!7.78e-09!37;UBERON:0005172!1.14e-08!55;UBERON:0005173!1.14e-08!55;UBERON:0001225!1.31e-08!13;UBERON:0008987!1.31e-08!13;UBERON:0001851!1.75e-08!16;UBERON:0000058!3.17e-08!26;UBERON:0005911!2.97e-07!82;UBERON:0009569!3.00e-07!113;UBERON:0004119!3.88e-07!169;UBERON:0000925!3.88e-07!169;UBERON:0006595!3.88e-07!169;UBERON:0000481!4.70e-07!347;UBERON:0000353!5.24e-07!17;UBERON:0002417!7.82e-07!61;UBERON:0000916!7.82e-07!61;UBERON:0001986!9.21e-07!18;UBERON:0004638!9.21e-07!18;UBERON:0004852!9.21e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.49e-25;15!UBERON:0004819;3.49e-25;15!UBERON:0001285;3.49e-25;15!UBERON:0007684;3.49e-25;15!UBERON:0001225;4.28e-20;12!UBERON:0008987;4.28e-20;12!UBERON:0000353;6.67e-20;15!UBERON:0004211;3.28e-19;10!UBERON:0009773;3.28e-19;10!UBERON:0001231;3.28e-19;10!UBERON:0004810;3.28e-19;10!UBERON:0002113;2.87e-18;24!UBERON:0011143;2.87e-18;24!UBERON:0006554;5.33e-17;30!UBERON:0001008;5.33e-17;30!UBERON:0001851;8.33e-16;15!UBERON:0000489;1.04e-14;29!UBERON:0000074;1.73e-14;7!UBERON:0001229;1.73e-14;7!UBERON:0006853;3.64e-12;3!UBERON:0007685;3.64e-12;3!UBERON:0004134;3.64e-12;3!UBERON:0003567;1.72e-09;2!UBERON:0003838;1.72e-09;2!UBERON:0003586;1.72e-09;2!UBERON:0005169;1.72e-09;2!UBERON:0002321;1.72e-09;2!UBERON:0005215;1.72e-09;2!UBERON:0002303;1.72e-09;2!UBERON:0002319;1.72e-09;2!UBERON:0004638;4.07e-07;18!UBERON:0001986;4.07e-07;18!UBERON:0004852;4.07e-07;18!UBERON:0003915;5.41e-07;9!UBERON:0004700;5.41e-07;9!UBERON:0001917;5.41e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,4.96e-25,15;UBERON:0009773,4.96e-25,15;UBERON:0001231,4.96e-25,15;UBERON:0001285,4.96e-25,15;UBERON:0007684,4.96e-25,15;UBERON:0004208,4.96e-25,15;UBERON:0006555,2.45e-23,16;UBERON:0004819,2.45e-23,16;UBERON:0001225,6.19e-20,12;UBERON:0008987,6.19e-20,12;UBERON:0000353,8.00e-20,15;UBERON:0004810,2.07e-19,10;UBERON:0002113,1.43e-16,26;UBERON:0003918,1.43e-16,26;UBERON:0011143,1.43e-16,26;UBERON:0005095,1.43e-16,26;UBERON:0007687,1.43e-16,26;UBERON:0006554,5.58e-16,47;UBERON:0001851,1.11e-15,15;UBERON:0001008,1.43e-15,48;UBERON:0010532,4.05e-14,7;UBERON:0000074,4.05e-14,7;UBERON:0001229,4.05e-14,7;UBERON:0001230,4.05e-14,7;UBERON:0003220,4.05e-14,7;UBERON:0005749,4.05e-14,7;UBERON:0004199,4.05e-14,7;UBERON:0004209,4.05e-14,7;UBERON:0004198,4.05e-14,7;UBERON:0000489,1.61e-13,31;UBERON:0006853,1.94e-12,3;UBERON:0007685,1.94e-12,3;UBERON:0004134,1.94e-12,3;UBERON:0005103,2.57e-12,8;UBERON:0000083,2.57e-12,8;UBERON:0009201,2.57e-12,8;UBERON:0006553,2.57e-12,8;UBERON:0003074,2.57e-12,8;UBERON:0003060,2.57e-12,8;UBERON:0000080,6.49e-11,9;UBERON:0002120,6.49e-11,9;UBERON:0004875,6.49e-11,9;UBERON:0005721,6.49e-11,9;UBERON:0005754,6.49e-11,9;UBERON:0007297,6.49e-11,9;UBERON:0003567,1.74e-09,2;UBERON:0003838,1.74e-09,2;UBERON:0003586,1.74e-09,2;UBERON:0005169,1.74e-09,2;UBERON:0002321,1.74e-09,2;UBERON:0005215,1.74e-09,2;UBERON:0002303,1.74e-09,2;UBERON:0002319,1.74e-09,2;UBERON:0004876,7.17e-09,11;UBERON:0005172,3.53e-08,54;UBERON:0005173,3.53e-08,54;UBERON:0003887,4.19e-08,12;UBERON:0004638,3.09e-07,18;UBERON:0001986,3.09e-07,18;UBERON:0004852,3.09e-07,18;UBERON:0002417,4.08e-07,60;UBERON:0000916,4.08e-07,60;UBERON:0000058,5.87e-07,19;UBERON:0003915,6.62e-07,9;UBERON:0004700,6.62e-07,9;UBERON:0001917,6.62e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,3.48900583986214,1.74753097704138,1.31883489114227,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0.626909442956176,0,0.136874425072884,0.251085279189606,0,0,0,0,0.383829398097213,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0.447830948479849,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30216690771284,0,0.150575119077773,0.127986611154418,1.24930726552346,0,0,0.201606743224732,0,0,0,0,0.12786256184353,0,0,0,0,0,0.756278537312543,0.665188192387692,0.790513071238134,0.261958150995425,0,0.370784442784429,0.649094787309367,0.174129737299267,0,0.238490624305342,0.571994910780128,0.371457501329565,1.19257444420023,0,0.694281003215189,1.13061588384802,0.419499436209906,1.37559020970034,0.208994966536811,0.258416759169329,1.06729878806013,0.33472061276467,0,0,0.732186172644509,1.47065232138347,0,0.803697554556718,1.79623498100936,0.675668882899933,0,1.89853131913626,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0.18611685633159,0,0,0.252433774244115,0,0,0,0,0,0.57978255948989,0.545492241181669,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.330881918197182,0.217879444092406,0.237270619111097,0.134831308160164,0.392442930250692,0,1.4763109092493,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0.329250856225877,0,0,0.370353780634118,0,0,1.44331342025273,0.115930404975077,0,0.577465791044295,0,0.951270761172991,0.790204397959275,0.858486162094873,0,0,0,1.87467667973554,0.16798212819886,0.141775097242386,0,0,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,2.1798003441664,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0.710783897485092,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0.606255142892519,1.66435439510497,4.23346410661552,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.362578348774867,1.80455823272956,0,0,0,0,0.902399225814824,0.693138033939733,3.92174884588428,5.84556898613043,0.633309773357254,1.13733384070897,1.02056223165909,0.647747748306418,0,2.70946437543853,2.00675909541941,1.27438136522519,1.66215201785745,1.56712328305525,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0.275673144969061,0,0,0,0.0890320356467374,0.495854746082934,0,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.0941438007767792,2.15252686335615,0,0.443430153536676,0.459446800413919,0,0,0.569647187174163,0,0.411362273086194,1.29694662238543,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0.23874448473769,0.593929361665277,0,0.994147647766298,0.281338832821026,0.445234820091624,0,0.211125408127993,0.19924798825107,0,0,1.02268682502155,0,0,0.539210106883961,0,0,0.295930216910801,0,0,0.969332746095218,0.371072392647405,0,0.520855522170466,1.04951999995435,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0.241192877250816,0,0.110579259931225,0.295547618953547,0.658156191461918,0,0,0.153900517007594,0,0.23056390438806,0.0897576444097721,0.108647371922008,0.638002319463839,0.549585560411174,0,0,0,0,0,0,0,0,0,1.05499032264014,0.163232808159148,0.282706142867882,0,0,0,0,0,0,0,0.067401132980677,0.802577647298789,0.234264445725339,0,0,0.242780379534093,0,0,0,0,0,0,1.32930774541437,0.330991955875499,0.313932918407225,0,0,0,0,0.293977192243133,0.34823682632161,0.34945333648406,0,0,0.0730893170861856,0.0821154570532092,0,0,0,0,0,0.253243183823515,0,0.64127056201227,0,0.599428828746391,0.288180834308212,0.114536596165916,0,0,0.49701014226173,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0.335917362433631,0,0,0.236349546921671,0.0824158583811665,0.0674035438541849,0.393709926058995,0,0,0,0,0.137539436597234,0,0,0,0.728994679896296,0,0.0788057072991982,0.577000469484979,0,0,0.767660789277781,0,0,2.034148301238,0,0,0,0,0,0,0.226624183040251,0.146552233678082,0,0,0.13223260174269,0,0,0,0.157204305099666,0.414239055347196,0,0,0,2.55336503108073,0,0,0,0,0.314108192500469,0,0.488105059607853,0.250381861413,0,0,0.372578417648301,0,0.37494122388632,0.606596470166591,0,0.235265819698172,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0.155262956876259,0,0,2.08698024724694,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0.428883182749851,3.13193150358254,0.680117776536817,0.463044948647668,0.734210113519403,0.179088841081487,0.617602894321944,0.438568099157414,1.06013487567529,0.964570191354574,0,0,0.345430341731199,0.303859956177382,0.276516872303462,0,0,0,0,0,1.47918486351039,0,0,0,1.70254786070051,0,0,0,0,0.107824811396682,0,0,0,0,0.123935764259002,0,0,0,0,0,1.2249819094128,0.321146125482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| |||
|short_description=p6@PDGFB | |||
}} |
Revision as of 16:05, 21 January 2014
Short description: | p6@PDGFB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PDGFB_5end |
Coexpression cluster: | NA |
Association with transcript: | 39bp_to_BC029822_5end |
EntrezGene: | PDGFB |
HGNC: | 8800 |
UniProt: | P01127 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 4.96e-25 | 15 |
kidney cell | 7.62e-22 | 17 |
kidney epithelial cell | 7.62e-22 | 17 |
kidney cortical cell | 6.19e-20 | 12 |
renal cortical epithelial cell | 6.19e-20 | 12 |
kidney tubule cell | 2.07e-19 | 10 |
nephron tubule epithelial cell | 2.07e-19 | 10 |
epithelial cell | 4.73e-17 | 253 |
glomerular cell | 4.05e-14 | 7 |
kidney corpuscule cell | 4.05e-14 | 7 |
meso-epithelial cell | 1.18e-13 | 45 |
brush border epithelial cell | 1.94e-12 | 3 |
kidney cortex tubule cell | 1.94e-12 | 3 |
epithelial cell of proximal tubule | 1.94e-12 | 3 |
endothelial cell | 1.01e-10 | 36 |
mesangial cell | 1.74e-09 | 2 |
kidney interstitial cell | 1.74e-09 | 2 |
juxtaglomerular complex cell | 1.74e-09 | 2 |
renal interstitial pericyte | 1.74e-09 | 2 |
extraglomerular mesangial cell | 1.74e-09 | 2 |
amniotic epithelial cell | 6.59e-09 | 2 |
lining cell | 2.00e-08 | 58 |
barrier cell | 2.00e-08 | 58 |
glomerular endothelial cell | 1.86e-07 | 5 |
blood vessel endothelial cell | 3.09e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.09e-07 | 18 |
endothelial cell of vascular tree | 5.65e-07 | 24 |
endothelial cell of artery | 6.62e-07 | 9 |