FF:11514-119H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005699 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005699 | ||
|accession_numbers=CAGE;DRX008430;DRR009302;DRZ000727;DRZ002112;DRZ012077;DRZ013462 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037195;DRR041561;DRZ007203 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000153 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.79!797.27!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.02!104.63!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.87!73.93!SOX17;;chr21:39870339..39870443,-!p1@ERG!1.67!45.49!ERG;;chr19:46801639..46801699,+!p1@HIF3A!1.59!37.53!HIF3A;;chr2:177053386..177053402,+!p1@HOXD1!1.59!37.53!HOXD1;;chr10:94449703..94449718,+!p1@HHEX!1.50!113.73!HHEX;;chr17:6926362..6926377,+!p1@BCL6B!1.47!28.43!BCL6B;;chr12:96588368..96588394,+!p3@ELK3!1.46!72.79!ELK3;;chr5:71803177..71803255,-!p1@ZNF366!1.43!26.16!ZNF366;;chr17:46675558..46675577,-!p2@HOXB6!1.40!23.88!HOXB6;;chr17:46688334..46688385,-!p1@HOXB7!1.38!32.98!HOXB7;;chr19:13213511..13213545,-!p2@LYL1!1.38!25.02!LYL1;;chr9:124991204..124991246,-!p1@LHX6!1.38!22.75!LHX6;;chr17:46682321..46682362,-!p1@HOXB6!1.33!20.47!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!1.33!20.47!HOXB8;;chr19:13213399..13213414,-!p6@LYL1!1.31!19.33!LYL1;;chr6:34204921..34204939,+!p3@HMGA1!1.21!446.97!HMGA1;;chr3:128206762..128206781,-!p2@GATA2!1.17!84.16!GATA2;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.65!HOXD8;;chr20:590944..590960,-!p1@TCF15!1.17!13.65!TCF15;;chr2:46524537..46524553,+!p1@EPAS1!1.16!1302.25!EPAS1;;chr17:46691732..46691766,-!p4@HOXB8!1.05!10.24!HOXB8;;chr7:27196267..27196311,-!p1@HOXA7!1.05!10.24!HOXA7;;chr20:42295745..42295765,+!p1@MYBL2!1.02!158.09!MYBL2;;chr20:42543441..42543497,+!p1@TOX2!1.02!43.22!TOX2;;chr15:96873984..96873999,+!p3@NR2F2!1.01!69.38!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!1.01!12.51!EPAS1;;chr15:37392576..37392589,-!p12@MEIS2!1.01!11.37!MEIS2;;chr17:46675586..46675600,-!p6@HOXB6!1.00!9.10!HOXB6;;chr2:176994919..176994931,+!p2@HOXD8!1.00!9.10!HOXD8;;chr4:299227..299272,-!p1@ZNF732!1.00!9.10!ZNF732;;chr1:23885981..23886002,-!p1@ID3!0.99!1572.93!ID3;;chr17:46675420..46675465,-!p3@HOXB6!0.99!10.24!HOXB6;;chr15:37390850..37390909,-!p3@MEIS2!0.98!17.06!MEIS2;;chr20:50721803..50721857,-!p2@ZFP64!0.98!13.65!ZFP64;;chr20:42543506..42543549,+!p2@TOX2!0.97!20.47!TOX2;;chr19:13213662..13213686,-!p1@LYL1!0.97!12.51!LYL1;;chr2:46602879..46602899,+!p8@EPAS1!0.97!10.24!EPAS1;;chr18:53068911..53068935,-!p4@TCF4!0.95!9.10!TCF4;;chr17:1959369..1959388,+!p2@HIC1!0.93!20.47!HIC1;;chr15:37392616..37392638,-!p2@MEIS2!0.90!22.75!MEIS2;;chr6:21597765..21597779,+!p2@SOX4!0.89!56.87!SOX4;;chr1:221052776..221052799,+!p1@HLX!0.89!12.51!HLX;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.82!HIF3A;;chr1:6479968..6479986,-!p1@HES2!0.89!6.82!HES2;;chr20:62680671..62680679,-!p2@SOX18!0.89!6.82!SOX18;;chr17:46655672..46655697,-!p3@HOXB4!0.89!6.82!HOXB4;;chr2:176987441..176987454,+!p1@HOXD9!0.89!6.82!HOXD9;;chr2:177001290..177001315,+!p1@HOXD3!0.89!6.82!HOXD3;;chr2:46524897..46524911,+!p2@EPAS1!0.88!19.33!EPAS1;;chr13:72441315..72441454,-!p1@DACH1!0.88!13.65!DACH1;;chr15:96874012..96874042,+!p2@NR2F2!0.85!58.00!NR2F2;;chr12:2986206..2986258,-!p2@FOXM1!0.85!38.67!FOXM1;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.06!HHEX;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.69!SOX11;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.69!HOXA9;;chr15:37391614..37391626,-!p18@MEIS2!0.83!5.69!MEIS2;;chr17:46675469..46675481,-!p4@HOXB6!0.83!5.69!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.83!5.69!HOXB7;;chr17:6926381..6926392,+!p2@BCL6B!0.83!5.69!BCL6B;;chr19:13213465..13213478,-!p7@LYL1!0.83!5.69!LYL1;;chr19:13213555..13213568,-!p5@LYL1!0.83!5.69!LYL1;;chr5:176738887..176738934,-!p1@MXD3!0.82!39.81!MXD3;;chr17:46687959..46688007,-!p2@HOXB7!0.82!7.96!HOXB7;;chr19:49865646..49865718,-!p1@TEAD2!0.80!48.91!TEAD2;;chr9:130954041..130954121,-!p2@CIZ1!0.80!25.02!CIZ1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.79!406.03!TAX1BP3;;chr20:31350184..31350200,+!p1@DNMT3B!0.79!11.37!DNMT3B;;chr12:3068501..3068515,+!p4@TEAD4!0.78!9.10!TEAD4;;chr12:3068544..3068597,+!p1@TEAD4!0.77!31.85!TEAD4;;chr19:1652555..1652568,-!p2@TCF3!0.77!21.61!TCF3;;chr15:96873921..96873946,+!p1@NR2F2!0.76!148.99!NR2F2;;chr17:41623009..41623053,-!p4@ETV4!0.76!7.96!ETV4;;chr7:149470641..149470694,-!p1@ZNF467!0.75!22.75!ZNF467;;chr18:22932080..22932170,-!p1@ZNF521!0.75!21.61!ZNF521;;chr19:45908292..45908374,-!p1@PPP1R13L!0.74!44.36!PPP1R13L;;chr13:41240717..41240735,-!p2@FOXO1!0.74!34.12!FOXO1;;chr15:96876966..96877017,+!p12@NR2F2!0.74!6.82!NR2F2;;chr1:156470494..156470505,-!p3@MEF2D!0.74!6.82!MEF2D;;chr16:86544113..86544145,+!p1@FOXF1!0.74!5.69!FOXF1;;chr11:65429891..65429915,-!p7@RELA!0.74!4.55!RELA;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.55!KDM5D;;chr1:200008734..200008765,+!p2@NR5A2!0.74!4.55!NR5A2;;chr1:47696918..47696935,-!p6@TAL1!0.74!4.55!TAL1;;chr20:42602000..42602034,+!p5@TOX2!0.74!4.55!TOX2;;chr20:50721788..50721799,-!p8@ZFP64!0.74!4.55!ZFP64;;chr7:27205106..27205134,-!p2@HOXA9!0.74!4.55!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.74!4.55!SOX17;;chr1:221053049..221053075,+!p3@HLX!0.73!7.96!HLX;;chr17:46622070..46622109,-!p1@HOXB2!0.72!10.24!HOXB2;;chr2:85360499..85360598,+!p1@TCF7L1!0.71!26.16!TCF7L1;;chr1:935467..935484,-!p1@HES4!0.69!19.33!HES4;;chr5:321810..321877,+!p1@AHRR!0.69!13.65!AHRR;;ch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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.79!797.27!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.02!104.63!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.87!73.93!SOX17;;chr21:39870339..39870443,-!p1@ERG!1.67!45.49!ERG;;chr19:46801639..46801699,+!p1@HIF3A!1.59!37.53!HIF3A;;chr2:177053386..177053402,+!p1@HOXD1!1.59!37.53!HOXD1;;chr10:94449703..94449718,+!p1@HHEX!1.50!113.73!HHEX;;chr17:6926362..6926377,+!p1@BCL6B!1.47!28.43!BCL6B;;chr12:96588368..96588394,+!p3@ELK3!1.46!72.79!ELK3;;chr5:71803177..71803255,-!p1@ZNF366!1.43!26.16!ZNF366;;chr17:46675558..46675577,-!p2@HOXB6!1.40!23.88!HOXB6;;chr17:46688334..46688385,-!p1@HOXB7!1.38!32.98!HOXB7;;chr19:13213511..13213545,-!p2@LYL1!1.38!25.02!LYL1;;chr9:124991204..124991246,-!p1@LHX6!1.38!22.75!LHX6;;chr17:46682321..46682362,-!p1@HOXB6!1.33!20.47!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!1.33!20.47!HOXB8;;chr19:13213399..13213414,-!p6@LYL1!1.31!19.33!LYL1;;chr6:34204921..34204939,+!p3@HMGA1!1.21!446.97!HMGA1;;chr3:128206762..128206781,-!p2@GATA2!1.17!84.16!GATA2;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.65!HOXD8;;chr20:590944..590960,-!p1@TCF15!1.17!13.65!TCF15;;chr2:46524537..46524553,+!p1@EPAS1!1.16!1302.25!EPAS1;;chr17:46691732..46691766,-!p4@HOXB8!1.05!10.24!HOXB8;;chr7:27196267..27196311,-!p1@HOXA7!1.05!10.24!HOXA7;;chr20:42295745..42295765,+!p1@MYBL2!1.02!158.09!MYBL2;;chr20:42543441..42543497,+!p1@TOX2!1.02!43.22!TOX2;;chr15:96873984..96873999,+!p3@NR2F2!1.01!69.38!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!1.01!12.51!EPAS1;;chr15:37392576..37392589,-!p12@MEIS2!1.01!11.37!MEIS2;;chr17:46675586..46675600,-!p6@HOXB6!1.00!9.10!HOXB6;;chr2:176994919..176994931,+!p2@HOXD8!1.00!9.10!HOXD8;;chr4:299227..299272,-!p1@ZNF732!1.00!9.10!ZNF732;;chr1:23885981..23886002,-!p1@ID3!0.99!1572.93!ID3;;chr17:46675420..46675465,-!p3@HOXB6!0.99!10.24!HOXB6;;chr15:37390850..37390909,-!p3@MEIS2!0.98!17.06!MEIS2;;chr20:50721803..50721857,-!p2@ZFP64!0.98!13.65!ZFP64;;chr20:42543506..42543549,+!p2@TOX2!0.97!20.47!TOX2;;chr19:13213662..13213686,-!p1@LYL1!0.97!12.51!LYL1;;chr2:46602879..46602899,+!p8@EPAS1!0.97!10.24!EPAS1;;chr18:53068911..53068935,-!p4@TCF4!0.95!9.10!TCF4;;chr17:1959369..1959388,+!p2@HIC1!0.93!20.47!HIC1;;chr15:37392616..37392638,-!p2@MEIS2!0.90!22.75!MEIS2;;chr6:21597765..21597779,+!p2@SOX4!0.89!56.87!SOX4;;chr1:221052776..221052799,+!p1@HLX!0.89!12.51!HLX;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.82!HIF3A;;chr1:6479968..6479986,-!p1@HES2!0.89!6.82!HES2;;chr20:62680671..62680679,-!p2@SOX18!0.89!6.82!SOX18;;chr17:46655672..46655697,-!p3@HOXB4!0.89!6.82!HOXB4;;chr2:176987441..176987454,+!p1@HOXD9!0.89!6.82!HOXD9;;chr2:177001290..177001315,+!p1@HOXD3!0.89!6.82!HOXD3;;chr2:46524897..46524911,+!p2@EPAS1!0.88!19.33!EPAS1;;chr13:72441315..72441454,-!p1@DACH1!0.88!13.65!DACH1;;chr15:96874012..96874042,+!p2@NR2F2!0.85!58.00!NR2F2;;chr12:2986206..2986258,-!p2@FOXM1!0.85!38.67!FOXM1;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.06!HHEX;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.69!SOX11;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.69!HOXA9;;chr15:37391614..37391626,-!p18@MEIS2!0.83!5.69!MEIS2;;chr17:46675469..46675481,-!p4@HOXB6!0.83!5.69!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.83!5.69!HOXB7;;chr17:6926381..6926392,+!p2@BCL6B!0.83!5.69!BCL6B;;chr19:13213465..13213478,-!p7@LYL1!0.83!5.69!LYL1;;chr19:13213555..13213568,-!p5@LYL1!0.83!5.69!LYL1;;chr5:176738887..176738934,-!p1@MXD3!0.82!39.81!MXD3;;chr17:46687959..46688007,-!p2@HOXB7!0.82!7.96!HOXB7;;chr19:49865646..49865718,-!p1@TEAD2!0.80!48.91!TEAD2;;chr9:130954041..130954121,-!p2@CIZ1!0.80!25.02!CIZ1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.79!406.03!TAX1BP3;;chr20:31350184..31350200,+!p1@DNMT3B!0.79!11.37!DNMT3B;;chr12:3068501..3068515,+!p4@TEAD4!0.78!9.10!TEAD4;;chr12:3068544..3068597,+!p1@TEAD4!0.77!31.85!TEAD4;;chr19:1652555..1652568,-!p2@TCF3!0.77!21.61!TCF3;;chr15:96873921..96873946,+!p1@NR2F2!0.76!148.99!NR2F2;;chr17:41623009..41623053,-!p4@ETV4!0.76!7.96!ETV4;;chr7:149470641..149470694,-!p1@ZNF467!0.75!22.75!ZNF467;;chr18:22932080..22932170,-!p1@ZNF521!0.75!21.61!ZNF521;;chr19:45908292..45908374,-!p1@PPP1R13L!0.74!44.36!PPP1R13L;;chr13:41240717..41240735,-!p2@FOXO1!0.74!34.12!FOXO1;;chr15:96876966..96877017,+!p12@NR2F2!0.74!6.82!NR2F2;;chr1:156470494..156470505,-!p3@MEF2D!0.74!6.82!MEF2D;;chr16:86544113..86544145,+!p1@FOXF1!0.74!5.69!FOXF1;;chr11:65429891..65429915,-!p7@RELA!0.74!4.55!RELA;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.55!KDM5D;;chr1:200008734..200008765,+!p2@NR5A2!0.74!4.55!NR5A2;;chr1:47696918..47696935,-!p6@TAL1!0.74!4.55!TAL1;;chr20:42602000..42602034,+!p5@TOX2!0.74!4.55!TOX2;;chr20:50721788..50721799,-!p8@ZFP64!0.74!4.55!ZFP64;;chr7:27205106..27205134,-!p2@HOXA9!0.74!4.55!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.74!4.55!SOX17;;chr1:221053049..221053075,+!p3@HLX!0.73!7.96!HLX;;chr17:46622070..46622109,-!p1@HOXB2!0.72!10.24!HOXB2;;chr2:85360499..85360598,+!p1@TCF7L1!0.71!26.16!TCF7L1;;chr1:935467..935484,-!p1@HES4!0.69!19.33!HES4;;chr5:321810..321877,+!p1@AHRR!0.69!13.65!AHRR;;chr17:41623692..41623715,-!p1@ETV4!0.68!18.20!ETV4;;chr12:3069037..3069119,+!p2@TEAD4!0.68!14.79!TEAD4;;chr10:8096631..8096660,+!p1@GATA3!0.67!4.55!GATA3;;chrX:129244454..129244488,-!p1@ELF4!0.66!29.57!ELF4;;chr2:46524878..46524891,+!p3@EPAS1!0.66!6.82!EPAS1;;chr1:156470323..156470332,-!p4@MEF2D!0.66!5.69!MEF2D;;chr17:4890695..4890773,-!p2@CAMTA2!0.65!12.51!CAMTA2;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.10!NR2F2;;chr20:2673383..2673441,+!p1@EBF4!0.64!5.69!EBF4;;chr1:47697881..47697910,-!p4@TAL1!0.64!3.41!TAL1;;chr17:46675344..46675355,-!p9@HOXB6!0.64!3.41!HOXB6;;chr17:46675539..46675551,-!p7@HOXB6!0.64!3.41!HOXB6;;chr18:53068893..53068902,-!p28@TCF4!0.64!3.41!TCF4;;chr19:35454968..35454984,-!p3@ZNF792!0.64!3.41!ZNF792;;chr6:21597687..21597708,+!p14@SOX4!0.64!3.41!SOX4;;chrX:107018836..107018862,-!p8@TSC22D3!0.64!3.41!TSC22D3;;chr12:3068979..3068993,+!p11@TEAD4!0.64!3.41!TEAD4;;chr13:72441506..72441562,-!p3@DACH1!0.64!3.41!DACH1;;chr14:74256787..74256858,-!p6@C14orf43!0.64!3.41!C14orf43;;chr16:86600426..86600441,+!p1@FOXC2!0.63!9.10!FOXC2;;chr20:62462566..62462631,-!p1@ZBTB46!0.63!6.82!ZBTB46;;chr11:47236489..47236567,+!p2@DDB2!0.62!52.32!DDB2;;chr11:128563948..128564003,+!p1@FLI1!0.62!45.49!FLI1;;chr2:85981222..85981259,+!p2@ATOH8!0.62!5.69!ATOH8;;chr19:44123734..44123796,-!p1@ZNF428!0.61!138.75!ZNF428;;chr6:21593973..21593988,+!p1@SOX4!0.61!134.21!SOX4;;chr6:44233252..44233296,-!p1@NFKBIE!0.61!36.39!NFKBIE;;chr18:77160282..77160343,+!p2@NFATC1!0.61!22.75!NFATC1;;chr15:90544532..90544563,+!p1@ZNF710!0.61!6.82!ZNF710;;chr19:6424783..6424802,-!p2@KHSRP!0.60!73.93!KHSRP;;chr6:31126291..31126399,+!p1@TCF19!0.60!34.12!TCF19;;chr16:1429627..1429662,-!p2@UNKL!0.60!10.24!UNKL;;chr12:66218255..66218304,+!p3@HMGA2!0.60!9.10!HMGA2;;chr15:37392724..37392757,-!p1@MEIS2!0.59!15.92!MEIS2;;chr2:74375081..74375092,-!p2@BOLA3!0.59!6.82!BOLA3;;chr8:80679993..80680011,-!p1@HEY1!0.59!4.55!HEY1;;chr6:126070769..126070801,+!p1@HEY2!0.59!3.41!HEY2;;chr1:23886132..23886156,-!p2@ID3!0.59!3.41!ID3;;chr19:15543565..15543579,-!p2@WIZ!0.58!14.79!WIZ;;chrX:129244885..129244926,-!p3@ELF4!0.58!7.96!ELF4;;chr11:61520075..61520136,+!p1@C11orf9!0.58!6.82!C11orf9;;chr10:94449649..94449664,+!p3@HHEX!0.58!4.55!HHEX;;chr1:8926441..8926473,-!p10@ENO1!0.58!4.55!ENO1;;chr1:221052994..221053008,+!p6@HLX!0.58!3.41!HLX;;chr10:8095593..8095625,+!p3@GATA3!0.58!3.41!GATA3;;chr3:18466660..18466676,-!p5@SATB1!0.58!3.41!SATB1;;chr6:34204672..34204692,+!p1@HMGA1!0.57!379.87!HMGA1;;chr2:74375058..74375069,-!p3@BOLA3!0.57!5.69!BOLA3;;chr3:185826814..185826825,-!p3@ETV5!0.57!5.69!ETV5;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.55!HOXB2;;chr1:221052840..221052875,+!p4@HLX!0.57!3.41!HLX;;chr20:30193083..30193098,+!p1@ID1!0.56!268.41!ID1;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.47!HIC1;;chr7:148892629..148892651,+!p2@ZNF282!0.56!19.33!ZNF282;;chr11:62521614..62521646,-!p1@ZBTB3!0.55!15.92!ZBTB3;;chr8:106330656..106330684,+!p1@ZFPM2!0.55!7.96!ZFPM2;;chr19:35455110..35455149,-!p1@ZNF792!0.55!5.69!ZNF792;;chr17:42297092..42297112,-!p11@UBTF!0.55!4.55!UBTF;;chr6:21597431..21597447,+!p8@SOX4!0.55!3.41!SOX4;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.55!3.41!PRDM11;;chr12:80083544..80083558,-!p13@PAWR!0.55!3.41!PAWR;;chr17:46126136..46126152,+!p1@NFE2L1!0.54!163.78!NFE2L1;;chr19:57106647..57106686,+!p1@ZNF71!0.54!20.47!ZNF71;;chr1:204042233..204042249,+!p1@SOX13!0.54!19.33!SOX13;;chr9:14314131..14314147,-!p2@NFIB!0.54!17.06!NFIB;;chr1:151032922..151032951,+!p2@MLLT11!0.54!4.55!MLLT11;;chr2:85980951..85981004,+!p1@ATOH8!0.54!4.55!ATOH8;;chr12:66218443..66218461,+!p8@HMGA2!0.54!3.41!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!0.54!3.41!NFATC2;;chr10:77161504..77161530,-!p1@ZNF503!0.53!40.94!ZNF503;;chr11:62369108..62369183,-!p3@MTA2!0.53!39.81!MTA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.53!14.79!NFE2L3;;chr7:150076406..150076456,+!p1@ZNF775!0.53!13.65!ZNF775;;chr22:41697497..41697515,+!p2@ZC3H7B!0.53!7.96!ZC3H7B;;chr19:56632858..56632903,-!p2@ZNF787!0.53!6.82!ZNF787;;chr1:204042723..204042784,+!p3@SOX13!0.53!4.55!SOX13;;chr17:79885633..79885645,-!p4@MAFG!0.53!4.55!MAFG;;chr14:105886290..105886299,+!p5@MTA1!0.53!3.41!MTA1;;chr2:46612334..46612349,+!p6@EPAS1!0.53!3.41!EPAS1;;chr5:131826457..131826514,-!p1@IRF1!0.52!117.15!IRF1;;chr17:61920023..61920110,-!p1@SMARCD2!0.52!42.08!SMARCD2;;chr1:8877692..8877732,-!p1@RERE!0.52!23.88!RERE;;chr11:62368696..62368759,-!p4@MTA2!0.52!18.20!MTA2;;chr19:36545291..36545314,-!p2@THAP8!0.52!6.82!THAP8;;chr13:37494365..37494381,-!p1@SMAD9!0.52!4.55!SMAD9;;chr12:54394059..54394088,+!p3@HOXC9!0.52!2.27!HOXC9;;chr12:57504069..57504090,-!p7@STAT6!0.52!2.27!STAT6;;chr12:66218469..66218477,+!p16@HMGA2!0.52!2.27!HMGA2;;chr12:80084018..80084035,-!p17@PAWR!0.52!2.27!PAWR;;chr13:37494275..37494304,-!p2@SMAD9!0.52!2.27!SMAD9;;chr13:72440772..72440847,-!p5@DACH1!0.52!2.27!DACH1;;chr13:72441074..72441172,-!p2@DACH1!0.52!2.27!DACH1;;chr16:86601052..86601066,+!p4@FOXC2!0.52!2.27!FOXC2;;chr16:86612320..86612394,+!p1@FOXL1!0.52!2.27!FOXL1;;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201 | |||
|ffid_belonging_in_development=CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor1.CNhs12074.11514-119H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor1.CNhs12074.11514-119H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor1.CNhs12074.11514-119H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor1.CNhs12074.11514-119H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor1.CNhs12074.11514-119H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11514-119H2 | |id=FF:11514-119H2 | ||
|is_a=EFO:0002091;;FF:0000153 | |is_a=EFO:0002091;;FF:0000153 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12074 | |||
|library_id_phase_based=2:CNhs12074 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11514 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.CCGTCC.11514 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11514 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.CCGTCC.11514 | |||
|name=Renal Glomerular Endothelial Cells, donor1 | |name=Renal Glomerular Endothelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12074,LSID838,release011,COMPLETED | |profile_hcage=CNhs12074,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4005 | |rna_catalog_number=SC4005 | ||
| Line 57: | Line 82: | ||
|rna_tube_id=119H2 | |rna_tube_id=119H2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=RXR{A,B,G}:1.76848416628;SOX{8,9,10}:1.68348352819;ZNF423:1.49257809688;ESRRA:1.44827298935;TFAP2{A,C}:1.33525819773;TLX1..3_NFIC{dimer}:1.31816353692;NR5A1,2:1.29852041472;TFAP4:1.17453389722;XCPE1{core}:1.14598914802;HES1:1.08329425393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.0629287884;RXRA_VDR{dimer}:1.01427191007;ZNF148:0.9802079665;EBF1:0.979408884077;AR:0.914536514686;PAX1,9:0.829738077958;ZNF238:0.798794381463;TP53:0.794947133003;FOXL1:0.793432622689;LEF1_TCF7_TCF7L1,2:0.778458225258;FOX{I1,J2}:0.777961937757;ZBTB6:0.769993296908;HIC1:0.744260751132;GTF2A1,2:0.733206745964;PAX6:0.710982600395;REST:0.699504571017;PPARG:0.690526833031;GATA6:0.687607923283;HAND1,2:0.67876654725;ARID5B:0.651013556991;IKZF1:0.643031779873;GZF1:0.638504177365;ETS1,2:0.599594612501;POU6F1:0.586355296222;SOX5:0.580842334066;SMAD1..7,9:0.576519148335;TFAP2B:0.556302124075;ZIC1..3:0.553879351712;NFATC1..3:0.534629308584;MYOD1:0.526826715133;IKZF2:0.517957158005;TAL1_TCF{3,4,12}:0.51216736237;LMO2:0.495038857143;FOXQ1:0.481839943787;PBX1:0.434613274971;TFCP2:0.430129194128;SOX2:0.429455816663;HNF4A_NR2F1,2:0.394790544069;SP1:0.392709797657;bHLH_family:0.338887535252;STAT2,4,6:0.306225395634;CRX:0.28710621516;GCM1,2:0.277519733127;GFI1B:0.275907735083;PAX5:0.265065272496;HOX{A5,B5}:0.251404520126;FOSL2:0.236142821975;PAX8:0.234106589352;TBP:0.233509035347;RORA:0.22994957183;SPIB:0.221608195528;TEAD1:0.214199838147;SPZ1:0.213700706351;NANOG:0.199927616631;NFE2:0.179498968291;LHX3,4:0.167264927202;GFI1:0.166225055524;POU2F1..3:0.129542915929;NFY{A,B,C}:0.125324948247;ESR1:0.119343688621;ADNP_IRX_SIX_ZHX:0.0728564854001;UFEwm:0.0705838188881;HBP1_HMGB_SSRP1_UBTF:0.0561004285876;HOX{A6,A7,B6,B7}:0.0279297960737;FOXM1:0.016340143989;NFKB1_REL_RELA:0.00456072729798;POU1F1:0.00386843506326;ONECUT1,2:-0.00238604428519;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00581835419813;NR1H4:-0.00832431495515;MED-1{core}:-0.00857097834255;BACH2:-0.00981408167878;HMX1:-0.0113306075334;EP300:-0.021015476965;NFE2L1:-0.0234238418867;NKX2-3_NKX2-5:-0.0279472534509;NKX2-2,8:-0.0313879187514;HNF1A:-0.0351757730082;SPI1:-0.0544630638939;MTE{core}:-0.0586695405224;MYB:-0.0671344170231;ZFP161:-0.0696795694874;ALX1:-0.0754870829419;MEF2{A,B,C,D}:-0.0922253338245;SOX17:-0.0973436693595;FOS_FOS{B,L1}_JUN{B,D}:-0.123895275012;STAT5{A,B}:-0.130227383524;RREB1:-0.151965231882;NR6A1:-0.166387538953;GTF2I:-0.169060974782;MTF1:-0.182480550605;TFDP1:-0.19713387731;NFE2L2:-0.205961988681;NR3C1:-0.225017027621;SRF:-0.238470426092;E2F1..5:-0.242432509766;FOX{D1,D2}:-0.258278080662;SNAI1..3:-0.262408271419;KLF4:-0.28435251107;SREBF1,2:-0.292525910052;VSX1,2:-0.29710352096;FOXA2:-0.300186075422;GLI1..3:-0.323725330424;ATF6:-0.339023388152;PATZ1:-0.368645376599;FOX{F1,F2,J1}:-0.369617258139;CUX2:-0.386215197172;HLF:-0.400594496605;ELF1,2,4:-0.40190254212;MAZ:-0.408263379288;EGR1..3:-0.414599990749;ZNF143:-0.415372068057;XBP1:-0.415512710748;RFX1:-0.427144614383;NANOG{mouse}:-0.444477032293;IRF1,2:-0.456817722835;PITX1..3:-0.457662065096;FOXP3:-0.466227583077;CEBPA,B_DDIT3:-0.490308616953;RUNX1..3:-0.493964358655;ZEB1:-0.494309590879;NHLH1,2:-0.501585295786;PAX2:-0.508963438364;OCT4_SOX2{dimer}:-0.523705661717;RBPJ:-0.527950746977;PRRX1,2:-0.529550822009;JUN:-0.554107332224;TEF:-0.579295702448;POU3F1..4:-0.584488601968;MZF1:-0.604911098528;PAX3,7:-0.622474024459;MYBL2:-0.659631011045;NFIX:-0.666405788327;DMAP1_NCOR{1,2}_SMARC:-0.673895165486;YY1:-0.721546462444;POU5F1:-0.746683740399;TOPORS:-0.760680902889;TGIF1:-0.780235305553;NKX3-2:-0.783138415899;HOXA9_MEIS1:-0.789046867228;MYFfamily:-0.815067443117;T:-0.839404917814;FOXO1,3,4:-0.852692062115;NFIL3:-0.874019152629;ALX4:-0.918063427358;GATA4:-0.918564943589;CDC5L:-0.922791049419;NRF1:-0.942344441915;IRF7:-0.95809318614;EN1,2:-0.959760269765;DBP:-0.990738677786;PRDM1:-1.02918179679;BPTF:-1.03330410378;STAT1,3:-1.05768246375;TBX4,5:-1.05896128092;ATF2:-1.07257602877;ATF4:-1.12069198152;BREu{core}:-1.14738537712;FOXP1:-1.15312405787;MAFB:-1.16309919871;CREB1:-1.18698948649;HIF1A:-1.23909705365;HOX{A4,D4}:-1.25795883366;ATF5_CREB3:-1.31777386387;AHR_ARNT_ARNT2:-1.34298473709;NKX3-1:-1.34424258461;FOXD3:-1.34961857379;TLX2:-1.39505986072;CDX1,2,4:-1.44858199033;HSF1,2:-1.46709801831;NKX6-1,2:-1.53754371926;PDX1:-1.54092840359;PAX4:-1.55573639099;AIRE:-1.55828860885;ZNF384:-1.56325724756;EVI1:-1.58902095067;HMGA1,2:-1.61910289023;ZBTB16:-1.67729653539;RFX2..5_RFXANK_RFXAP:-1.88230365082;FOXN1:-1.88489856735;NKX2-1,4:-1.95279492184;ELK1,4_GABP{A,B1}:-1.97565352876 | |top_motifs=RXR{A,B,G}:1.76848416628;SOX{8,9,10}:1.68348352819;ZNF423:1.49257809688;ESRRA:1.44827298935;TFAP2{A,C}:1.33525819773;TLX1..3_NFIC{dimer}:1.31816353692;NR5A1,2:1.29852041472;TFAP4:1.17453389722;XCPE1{core}:1.14598914802;HES1:1.08329425393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.0629287884;RXRA_VDR{dimer}:1.01427191007;ZNF148:0.9802079665;EBF1:0.979408884077;AR:0.914536514686;PAX1,9:0.829738077958;ZNF238:0.798794381463;TP53:0.794947133003;FOXL1:0.793432622689;LEF1_TCF7_TCF7L1,2:0.778458225258;FOX{I1,J2}:0.777961937757;ZBTB6:0.769993296908;HIC1:0.744260751132;GTF2A1,2:0.733206745964;PAX6:0.710982600395;REST:0.699504571017;PPARG:0.690526833031;GATA6:0.687607923283;HAND1,2:0.67876654725;ARID5B:0.651013556991;IKZF1:0.643031779873;GZF1:0.638504177365;ETS1,2:0.599594612501;POU6F1:0.586355296222;SOX5:0.580842334066;SMAD1..7,9:0.576519148335;TFAP2B:0.556302124075;ZIC1..3:0.553879351712;NFATC1..3:0.534629308584;MYOD1:0.526826715133;IKZF2:0.517957158005;TAL1_TCF{3,4,12}:0.51216736237;LMO2:0.495038857143;FOXQ1:0.481839943787;PBX1:0.434613274971;TFCP2:0.430129194128;SOX2:0.429455816663;HNF4A_NR2F1,2:0.394790544069;SP1:0.392709797657;bHLH_family:0.338887535252;STAT2,4,6:0.306225395634;CRX:0.28710621516;GCM1,2:0.277519733127;GFI1B:0.275907735083;PAX5:0.265065272496;HOX{A5,B5}:0.251404520126;FOSL2:0.236142821975;PAX8:0.234106589352;TBP:0.233509035347;RORA:0.22994957183;SPIB:0.221608195528;TEAD1:0.214199838147;SPZ1:0.213700706351;NANOG:0.199927616631;NFE2:0.179498968291;LHX3,4:0.167264927202;GFI1:0.166225055524;POU2F1..3:0.129542915929;NFY{A,B,C}:0.125324948247;ESR1:0.119343688621;ADNP_IRX_SIX_ZHX:0.0728564854001;UFEwm:0.0705838188881;HBP1_HMGB_SSRP1_UBTF:0.0561004285876;HOX{A6,A7,B6,B7}:0.0279297960737;FOXM1:0.016340143989;NFKB1_REL_RELA:0.00456072729798;POU1F1:0.00386843506326;ONECUT1,2:-0.00238604428519;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00581835419813;NR1H4:-0.00832431495515;MED-1{core}:-0.00857097834255;BACH2:-0.00981408167878;HMX1:-0.0113306075334;EP300:-0.021015476965;NFE2L1:-0.0234238418867;NKX2-3_NKX2-5:-0.0279472534509;NKX2-2,8:-0.0313879187514;HNF1A:-0.0351757730082;SPI1:-0.0544630638939;MTE{core}:-0.0586695405224;MYB:-0.0671344170231;ZFP161:-0.0696795694874;ALX1:-0.0754870829419;MEF2{A,B,C,D}:-0.0922253338245;SOX17:-0.0973436693595;FOS_FOS{B,L1}_JUN{B,D}:-0.123895275012;STAT5{A,B}:-0.130227383524;RREB1:-0.151965231882;NR6A1:-0.166387538953;GTF2I:-0.169060974782;MTF1:-0.182480550605;TFDP1:-0.19713387731;NFE2L2:-0.205961988681;NR3C1:-0.225017027621;SRF:-0.238470426092;E2F1..5:-0.242432509766;FOX{D1,D2}:-0.258278080662;SNAI1..3:-0.262408271419;KLF4:-0.28435251107;SREBF1,2:-0.292525910052;VSX1,2:-0.29710352096;FOXA2:-0.300186075422;GLI1..3:-0.323725330424;ATF6:-0.339023388152;PATZ1:-0.368645376599;FOX{F1,F2,J1}:-0.369617258139;CUX2:-0.386215197172;HLF:-0.400594496605;ELF1,2,4:-0.40190254212;MAZ:-0.408263379288;EGR1..3:-0.414599990749;ZNF143:-0.415372068057;XBP1:-0.415512710748;RFX1:-0.427144614383;NANOG{mouse}:-0.444477032293;IRF1,2:-0.456817722835;PITX1..3:-0.457662065096;FOXP3:-0.466227583077;CEBPA,B_DDIT3:-0.490308616953;RUNX1..3:-0.493964358655;ZEB1:-0.494309590879;NHLH1,2:-0.501585295786;PAX2:-0.508963438364;OCT4_SOX2{dimer}:-0.523705661717;RBPJ:-0.527950746977;PRRX1,2:-0.529550822009;JUN:-0.554107332224;TEF:-0.579295702448;POU3F1..4:-0.584488601968;MZF1:-0.604911098528;PAX3,7:-0.622474024459;MYBL2:-0.659631011045;NFIX:-0.666405788327;DMAP1_NCOR{1,2}_SMARC:-0.673895165486;YY1:-0.721546462444;POU5F1:-0.746683740399;TOPORS:-0.760680902889;TGIF1:-0.780235305553;NKX3-2:-0.783138415899;HOXA9_MEIS1:-0.789046867228;MYFfamily:-0.815067443117;T:-0.839404917814;FOXO1,3,4:-0.852692062115;NFIL3:-0.874019152629;ALX4:-0.918063427358;GATA4:-0.918564943589;CDC5L:-0.922791049419;NRF1:-0.942344441915;IRF7:-0.95809318614;EN1,2:-0.959760269765;DBP:-0.990738677786;PRDM1:-1.02918179679;BPTF:-1.03330410378;STAT1,3:-1.05768246375;TBX4,5:-1.05896128092;ATF2:-1.07257602877;ATF4:-1.12069198152;BREu{core}:-1.14738537712;FOXP1:-1.15312405787;MAFB:-1.16309919871;CREB1:-1.18698948649;HIF1A:-1.23909705365;HOX{A4,D4}:-1.25795883366;ATF5_CREB3:-1.31777386387;AHR_ARNT_ARNT2:-1.34298473709;NKX3-1:-1.34424258461;FOXD3:-1.34961857379;TLX2:-1.39505986072;CDX1,2,4:-1.44858199033;HSF1,2:-1.46709801831;NKX6-1,2:-1.53754371926;PDX1:-1.54092840359;PAX4:-1.55573639099;AIRE:-1.55828860885;ZNF384:-1.56325724756;EVI1:-1.58902095067;HMGA1,2:-1.61910289023;ZBTB16:-1.67729653539;RFX2..5_RFXANK_RFXAP:-1.88230365082;FOXN1:-1.88489856735;NKX2-1,4:-1.95279492184;ELK1,4_GABP{A,B1}:-1.97565352876 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11514-119H2;search_select_hide=table117:FF:11514-119H2 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Renal Glomerular Endothelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12074 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12074
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12074
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.548 |
| 10 | 10 | 0.684 |
| 100 | 100 | 0.728 |
| 101 | 101 | 0.342 |
| 102 | 102 | 0.546 |
| 103 | 103 | 0.778 |
| 104 | 104 | 0.393 |
| 105 | 105 | 0.207 |
| 106 | 106 | 0.0382 |
| 107 | 107 | 0.0542 |
| 108 | 108 | 0.446 |
| 109 | 109 | 0.147 |
| 11 | 11 | 0.0357 |
| 110 | 110 | 0.0975 |
| 111 | 111 | 0.592 |
| 112 | 112 | 0.359 |
| 113 | 113 | 0.743 |
| 114 | 114 | 0.395 |
| 115 | 115 | 0.922 |
| 116 | 116 | 0.711 |
| 117 | 117 | 0.826 |
| 118 | 118 | 0.866 |
| 119 | 119 | 0.139 |
| 12 | 12 | 0.501 |
| 120 | 120 | 0.428 |
| 121 | 121 | 0.947 |
| 122 | 122 | 0.74 |
| 123 | 123 | 0.224 |
| 124 | 124 | 0.591 |
| 125 | 125 | 0.562 |
| 126 | 126 | 0.572 |
| 127 | 127 | 0.96 |
| 128 | 128 | 0.157 |
| 129 | 129 | 0.0128 |
| 13 | 13 | 0.467 |
| 130 | 130 | 0.705 |
| 131 | 131 | 0.0511 |
| 132 | 132 | 0.14 |
| 133 | 133 | 0.205 |
| 134 | 134 | 0.82 |
| 135 | 135 | 0.128 |
| 136 | 136 | 0.84 |
| 137 | 137 | 0.515 |
| 138 | 138 | 0.713 |
| 139 | 139 | 0.243 |
| 14 | 14 | 0.817 |
| 140 | 140 | 0.711 |
| 141 | 141 | 0.139 |
| 142 | 142 | 0.535 |
| 143 | 143 | 0.00404 |
| 144 | 144 | 0.332 |
| 145 | 145 | 0.161 |
| 146 | 146 | 0.101 |
| 147 | 147 | 0.304 |
| 148 | 148 | 0.691 |
| 149 | 149 | 0.0184 |
| 15 | 15 | 0.34 |
| 150 | 150 | 0.23 |
| 151 | 151 | 0.446 |
| 152 | 152 | 0.0264 |
| 153 | 153 | 0.259 |
| 154 | 154 | 0.383 |
| 155 | 155 | 0.633 |
| 156 | 156 | 0.116 |
| 157 | 157 | 0.555 |
| 158 | 158 | 0.698 |
| 159 | 159 | 0.805 |
| 16 | 16 | 0.57 |
| 160 | 160 | 0.00247 |
| 161 | 161 | 0.751 |
| 162 | 162 | 0.465 |
| 163 | 163 | 0.825 |
| 164 | 164 | 0.887 |
| 165 | 165 | 0.286 |
| 166 | 166 | 0.245 |
| 167 | 167 | 0.165 |
| 168 | 168 | 0.419 |
| 169 | 169 | 0.031 |
| 17 | 17 | 0.122 |
| 18 | 18 | 0.318 |
| 19 | 19 | 0.072 |
| 2 | 2 | 0.22 |
| 20 | 20 | 0.718 |
| 21 | 21 | 0.858 |
| 22 | 22 | 0.0818 |
| 23 | 23 | 0.0494 |
| 24 | 24 | 0.749 |
| 25 | 25 | 0.745 |
| 26 | 26 | 0.0868 |
| 27 | 27 | 0.146 |
| 28 | 28 | 0.416 |
| 29 | 29 | 0.852 |
| 3 | 3 | 0.519 |
| 30 | 30 | 0.449 |
| 31 | 31 | 0.434 |
| 32 | 32 | 0.196 |
| 33 | 33 | 0.327 |
| 34 | 34 | 0.0839 |
| 35 | 35 | 0.686 |
| 36 | 36 | 0.161 |
| 37 | 37 | 0.234 |
| 38 | 38 | 0.172 |
| 39 | 39 | 0.231 |
| 4 | 4 | 0.168 |
| 40 | 40 | 0.00775 |
| 41 | 41 | 0.0744 |
| 42 | 42 | 0.807 |
| 43 | 43 | 0.292 |
| 44 | 44 | 0.26 |
| 45 | 45 | 0.169 |
| 46 | 46 | 0.0796 |
| 47 | 47 | 0.449 |
| 48 | 48 | 0.091 |
| 49 | 49 | 0.366 |
| 5 | 5 | 0.633 |
| 50 | 50 | 0.559 |
| 51 | 51 | 0.292 |
| 52 | 52 | 0.503 |
| 53 | 53 | 0.955 |
| 54 | 54 | 0.489 |
| 55 | 55 | 0.981 |
| 56 | 56 | 0.503 |
| 57 | 57 | 0.421 |
| 58 | 58 | 0.821 |
| 59 | 59 | 0.0118 |
| 6 | 6 | 0.206 |
| 60 | 60 | 0.205 |
| 61 | 61 | 0.973 |
| 62 | 62 | 0.804 |
| 63 | 63 | 0.329 |
| 64 | 64 | 0.0875 |
| 65 | 65 | 0.0186 |
| 66 | 66 | 0.585 |
| 67 | 67 | 0.805 |
| 68 | 68 | 0.0562 |
| 69 | 69 | 0.142 |
| 7 | 7 | 0.643 |
| 70 | 70 | 0.145 |
| 71 | 71 | 0.392 |
| 72 | 72 | 0.637 |
| 73 | 73 | 0.0204 |
| 74 | 74 | 0.858 |
| 75 | 75 | 0.337 |
| 76 | 76 | 0.355 |
| 77 | 77 | 0.0365 |
| 78 | 78 | 0.729 |
| 79 | 79 | 0.00733 |
| 8 | 8 | 0.0277 |
| 80 | 80 | 0.805 |
| 81 | 81 | 0.9 |
| 82 | 82 | 0.269 |
| 83 | 83 | 0.822 |
| 84 | 84 | 0.131 |
| 85 | 85 | 0.0782 |
| 86 | 86 | 0.788 |
| 87 | 87 | 0.415 |
| 88 | 88 | 0.653 |
| 89 | 89 | 0.417 |
| 9 | 9 | 0.262 |
| 90 | 90 | 0.665 |
| 91 | 91 | 0.0638 |
| 92 | 92 | 0.385 |
| 93 | 93 | 0.719 |
| 94 | 94 | 0.455 |
| 95 | 95 | 0.0785 |
| 96 | 96 | 0.513 |
| 97 | 97 | 0.633 |
| 98 | 98 | 0.0664 |
| 99 | 99 | 0.0476 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12074
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
