FF:11783-124B1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005943 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008433;DRR009305;DRZ000730;DRZ002115;DRZ012080;DRZ013465 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000153 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor4.CNhs13080.11783-124B1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor4.CNhs13080.11783-124B1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor4.CNhs13080.11783-124B1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor4.CNhs13080.11783-124B1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor4.CNhs13080.11783-124B1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11783-124B1 | |id=FF:11783-124B1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000153 | ||
|is_obsolete= | |||
|library_id=CNhs13080 | |||
|library_id_phase_based=2:CNhs13080 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11783 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11783 | |||
|name=Renal Glomerular Endothelial Cells, donor4 | |name=Renal Glomerular Endothelial Cells, donor4 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13080,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13080,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.695146008939983,0,0.850263282768897,0.58151855423413,0,0,0,0,0,0,0,0,0,0,0,0.405222104277016,0,0.251899093928589,0,0,0,0,0,0.757506142758312,0,0,0.478187101046782,0,0,0,0,0,0,0,0,0,0,0,0,0.803378228981213,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0613807093866762,0.405222104277016,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.405222104277016,0,0,0,0,0.405222104277016,0,0,0,0,0,0,0,0,0,0,0.457243206026981,0,0,0,0.214946985686067,0.465778162440724,0,0,0,0,-0.0980353512377064,0.289254818712289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.69958681111328,1.05980929084583,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.405222104277016,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0.135660096291408,0.276176616967863,-0.143515142523472,0,0,-0.0220569826325545,0,0.405222104277016,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.0283529909889985,-0.0683442610773682,0,0,0,0,-0.067629617195816,0,-0.120879483793741,0.322501935953599,-0.186547868082497,0.221489288234124,-0.055712496781182,0,0,0,-0.0419768721865195,0.197066314365675,0,0,0.0808312003866345,0.0212614335778491,0,0,1.04382172763351,0,-0.290228392792082,0.0141827436531258,0,-0.0095811471656305,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0.405222104277016,0,0.456770582719212,0,0,0.237857534869078,0.376276046086125,0.0694041645043805,0.366001321619603,0,0.102832377267103,0.327501959581172,0.674228565926325,0.0620127840854853,0.257820254905878,-0.189981719549847,0.2149559235064,0.0268561713529292,0.28545873610434,-0.0729191880732265,0.651638392302328,0.132529965223985,-0.015963280528541,0.234683755330733,0,0,0,-0.154000096411785,0,0,0.121028976348871,-0.0673038634296915,0.490482539001953,-0.051419837170461,0.247382430761563,-0.289993680239193,0.163078523681837,0.48264963992559,0.266349856827552,-0.218961272765192,0.210264514559814,0,0,0.167745030062188,0.154173985714863,0.23963786584769,0,-0.0787553575339642,-0.0683442610773682,0.102812674301668,0.266887464688684,0.543850831774231,0,0,-0.173555126594396,0,0,0,0,0,-0.0309127045896622,-0.539492143030166,0.517407274164327,0,0.173460779309697,-0.00650271533122735,0.130445939160598,0,-0.0936818376782544,-0.146009897457394,-0.298074152361292,0.11258829968078,0,0.257673795354738,-0.291439764671097,0.129339681379605,0.931556324881447,-0.0584468268118252,-0.119328242950087,-0.303158547473309,0.214946985686067,-0.038677029070355,0.129469171284759,0.662136003244584,0,-0.478322646241364,-0.274276027344508,0,0.560058392258886,0,-0.323484896773508,0,-0.255365928772301,0,0.733866029893155,0.531297613745112,-0.439289374580686,-0.788004555237732,0,0.61421287679764,1.92461892954958,0,0.34971319565428,0,0,-0.150367083334639,-0.086552275686938,-0.211650427864589,0.369193440872136,0,0.150005934432529,0,0,-0.22263423554303,-0.235476037764389,0,0.273558997867165,0.330883178608789,0.251247997831075,0.49517261739071,0,0,-0.240478233715708,0,0,1.00790409674199,-0.0479191862950241,0.552832820988851,0.496936494233116,0,-0.108622809454255,0,0,-0.177527765965176,0,-0.126539794723552,0,0,0.155340807678192,0,0,0,0,0,0,0,0,0,0,0,0,-0.729307931695639,-0.354833330216448,0,0.726184343699654,0,0,0,0.611143690825645,0,0,0,0,-0.376885611061113,0,0.627245420043451,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.792625557461638,0,0,0,0.578509637424579,0,0,0,0,-0.462861923845792,0,0,0,0,0.35624563649673,-0.0815818795468414,0,-0.643936276135614,0.690068242459049,0.914564092221395,0,0,0.488915703929984,0,0,-1.03594432163325,0.32285188131135,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.191745118567515,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.308460883546412,0,0,0,0,0,0.405222104277016,0,0,0.139717751162402,0,0,0,0,0,-0.0969923612426051,0,0,0,0,1.16303710846826,0,0,0.662723960628671,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.935528241662243,0,0,0,0,0,0,0,0.850263282768897,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.695146008939983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263172141968161,0,0.169169577992148,0.059932781672396,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.757506142758312,0,0,0.213539035612296,0,0,0,0,0,0,0.139755178856476,0.455256334924537,0.0442768366834577,0,0,0,-0.054385572482455,0,0,0.206919230825456,0.405222104277016,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251899093928589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531125222557006,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405222104277016,0,0,0,0,0,0,0,0.917813801392682,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.611143690825645,0,0,0,0,0.460373818062622,0,0,0,0,0.892448982161266,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757267252289829,0,0,0.894812769022811,0,0,0,0,0,0,0,0,0,0,0,0,0.688942656569745,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.61383216056003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70054869722681,1.05980929084583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.15211302396889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.0693103583879e-259!GO:0005737;cytoplasm;7.81979451131491e-148!GO:0043226;organelle;1.42828777114129e-125!GO:0043229;intracellular organelle;2.22301357426973e-125!GO:0043231;intracellular membrane-bound organelle;8.37319970213555e-124!GO:0043227;membrane-bound organelle;1.55364626843323e-123!GO:0044444;cytoplasmic part;1.59874164787353e-109!GO:0044422;organelle part;2.20917590363679e-91!GO:0044446;intracellular organelle part;2.68549638284655e-90!GO:0005515;protein binding;9.54110498300909e-71!GO:0032991;macromolecular complex;1.37655271850696e-58!GO:0044237;cellular metabolic process;4.1717739449604e-56!GO:0030529;ribonucleoprotein complex;4.52176367529587e-56!GO:0044238;primary metabolic process;5.95947761817563e-56!GO:0005739;mitochondrion;3.13349005637163e-55!GO:0043170;macromolecule metabolic process;1.29117987512296e-50!GO:0043233;organelle lumen;2.83121427137766e-44!GO:0031974;membrane-enclosed lumen;2.83121427137766e-44!GO:0003723;RNA binding;4.27431891652545e-41!GO:0019538;protein metabolic process;1.07065165980305e-40!GO:0005840;ribosome;1.55730759408925e-39!GO:0031090;organelle membrane;3.98921063773167e-39!GO:0044428;nuclear part;4.21596920158366e-38!GO:0005634;nucleus;5.82728247289447e-37!GO:0016043;cellular component organization and biogenesis;7.80621660651e-37!GO:0044260;cellular macromolecule metabolic process;6.10455659167834e-36!GO:0044267;cellular protein metabolic process;8.37013109256155e-36!GO:0003735;structural constituent of ribosome;6.12922169445589e-35!GO:0044429;mitochondrial part;4.06577490292701e-34!GO:0006412;translation;1.15724777433405e-33!GO:0033279;ribosomal subunit;6.25654159734657e-31!GO:0009058;biosynthetic process;7.61826358126802e-31!GO:0044249;cellular biosynthetic process;1.12933191521325e-29!GO:0031967;organelle envelope;5.40537674082598e-29!GO:0031975;envelope;1.06218431776033e-28!GO:0043234;protein complex;1.24705378528568e-28!GO:0005829;cytosol;2.11476479487263e-28!GO:0006396;RNA processing;7.66357545252712e-28!GO:0009059;macromolecule biosynthetic process;3.29311994653718e-27!GO:0015031;protein transport;1.19784048421137e-26!GO:0033036;macromolecule localization;8.3564225191191e-26!GO:0006996;organelle organization and biogenesis;1.75367786711025e-25!GO:0043283;biopolymer metabolic process;3.17723066180076e-25!GO:0005740;mitochondrial envelope;2.49879555557618e-24!GO:0045184;establishment of protein localization;2.81097899047291e-24!GO:0008104;protein localization;3.34698405286524e-24!GO:0031981;nuclear lumen;7.11265056535225e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.20416046737934e-23!GO:0065003;macromolecular complex assembly;1.16567471027136e-22!GO:0031966;mitochondrial membrane;2.01095832398634e-22!GO:0019866;organelle inner membrane;3.53817141909194e-22!GO:0046907;intracellular transport;3.53817141909194e-22!GO:0016071;mRNA metabolic process;2.18539840271767e-21!GO:0005743;mitochondrial inner membrane;4.7105241517965e-21!GO:0022607;cellular component assembly;1.53697475447108e-20!GO:0043228;non-membrane-bound organelle;2.61149509941852e-20!GO:0043232;intracellular non-membrane-bound organelle;2.61149509941852e-20!GO:0006886;intracellular protein transport;2.83461497717866e-20!GO:0008380;RNA splicing;7.6050352873327e-20!GO:0010467;gene expression;1.21807148465225e-19!GO:0006397;mRNA processing;1.56850329113293e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.23513541461065e-18!GO:0044445;cytosolic part;5.32719840398904e-18!GO:0006119;oxidative phosphorylation;1.11728590886126e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.35206135768622e-16!GO:0015934;large ribosomal subunit;4.27616568616804e-16!GO:0000166;nucleotide binding;5.85619944406737e-16!GO:0015935;small ribosomal subunit;8.42225908412942e-16!GO:0044455;mitochondrial membrane part;1.3886021319328e-15!GO:0005783;endoplasmic reticulum;1.59922480635132e-15!GO:0005654;nucleoplasm;6.72999469107531e-15!GO:0008134;transcription factor binding;1.08369606565163e-14!GO:0012505;endomembrane system;1.30085029837271e-14!GO:0006259;DNA metabolic process;1.33803296244611e-14!GO:0005681;spliceosome;1.75998791388562e-14!GO:0006457;protein folding;1.90227709739681e-14!GO:0016462;pyrophosphatase activity;5.0384756575725e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.0384756575725e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;5.11505211934332e-14!GO:0051649;establishment of cellular localization;1.00592464684565e-13!GO:0051641;cellular localization;1.14884951912649e-13!GO:0005746;mitochondrial respiratory chain;1.16097433966785e-13!GO:0043412;biopolymer modification;1.2322567230838e-13!GO:0044432;endoplasmic reticulum part;1.55119674481455e-13!GO:0005794;Golgi apparatus;3.14900134929719e-13!GO:0017111;nucleoside-triphosphatase activity;3.3550069375028e-13!GO:0048770;pigment granule;6.04319567155281e-13!GO:0042470;melanosome;6.04319567155281e-13!GO:0044451;nucleoplasm part;7.02689100742427e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.56234435489377e-13!GO:0050136;NADH dehydrogenase (quinone) activity;8.4710459106658e-13!GO:0003954;NADH dehydrogenase activity;8.4710459106658e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.4710459106658e-13!GO:0031980;mitochondrial lumen;8.4710459106658e-13!GO:0005759;mitochondrial matrix;8.4710459106658e-13!GO:0051186;cofactor metabolic process;8.88821936130656e-13!GO:0006464;protein modification process;1.22171822967614e-12!GO:0032553;ribonucleotide binding;1.92415544435273e-12!GO:0032555;purine ribonucleotide binding;1.92415544435273e-12!GO:0017076;purine nucleotide binding;9.3016814539032e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.04111798512202e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.42923053375116e-11!GO:0007049;cell cycle;1.5415849166918e-11!GO:0012501;programmed cell death;2.63924876476857e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.72717351429546e-11!GO:0016874;ligase activity;3.57048817578371e-11!GO:0006605;protein targeting;3.80978569578294e-11!GO:0006915;apoptosis;5.61078960034098e-11!GO:0005761;mitochondrial ribosome;9.42320745223565e-11!GO:0000313;organellar ribosome;9.42320745223565e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.79729877899278e-10!GO:0045271;respiratory chain complex I;1.79729877899278e-10!GO:0005747;mitochondrial respiratory chain complex I;1.79729877899278e-10!GO:0051082;unfolded protein binding;1.87458189918433e-10!GO:0043687;post-translational protein modification;1.97621864204364e-10!GO:0016192;vesicle-mediated transport;2.38102298874076e-10!GO:0003712;transcription cofactor activity;2.38734736816084e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.71296483800877e-10!GO:0042773;ATP synthesis coupled electron transport;3.71296483800877e-10!GO:0008219;cell death;4.44053182385955e-10!GO:0016265;death;4.44053182385955e-10!GO:0044265;cellular macromolecule catabolic process;4.8537853668566e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.31029139217462e-10!GO:0006512;ubiquitin cycle;6.87468019974017e-10!GO:0006732;coenzyme metabolic process;8.36610799661983e-10!GO:0032559;adenyl ribonucleotide binding;8.71360182105206e-10!GO:0005524;ATP binding;1.27260479502826e-09!GO:0022402;cell cycle process;1.29194238766853e-09!GO:0005730;nucleolus;1.31658431720458e-09!GO:0043285;biopolymer catabolic process;1.43136624671405e-09!GO:0009055;electron carrier activity;1.53454836277835e-09!GO:0022618;protein-RNA complex assembly;2.51247309832408e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.6805427211261e-09!GO:0005789;endoplasmic reticulum membrane;2.78717512054966e-09!GO:0048523;negative regulation of cellular process;2.93387122917284e-09!GO:0006366;transcription from RNA polymerase II promoter;3.21146802084536e-09!GO:0044248;cellular catabolic process;4.15278641435884e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;4.32562449886053e-09!GO:0030554;adenyl nucleotide binding;4.97271491965769e-09!GO:0009057;macromolecule catabolic process;6.05035749277035e-09!GO:0000502;proteasome complex (sensu Eukaryota);6.45548821594039e-09!GO:0019941;modification-dependent protein catabolic process;1.59563861540365e-08!GO:0043632;modification-dependent macromolecule catabolic process;1.59563861540365e-08!GO:0051603;proteolysis involved in cellular protein catabolic process;1.62460225142169e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.94406163356868e-08!GO:0000375;RNA splicing, via transesterification reactions;1.94406163356868e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.94406163356868e-08!GO:0044257;cellular protein catabolic process;2.04843199541048e-08!GO:0006323;DNA packaging;2.16814668671994e-08!GO:0006511;ubiquitin-dependent protein catabolic process;2.78319368392651e-08!GO:0005793;ER-Golgi intermediate compartment;2.82773781562201e-08!GO:0006793;phosphorus metabolic process;3.25968866641602e-08!GO:0006796;phosphate metabolic process;3.25968866641602e-08!GO:0051188;cofactor biosynthetic process;4.39581051653795e-08!GO:0016310;phosphorylation;5.89292775139123e-08!GO:0051276;chromosome organization and biogenesis;7.76969582175765e-08!GO:0048519;negative regulation of biological process;8.60501778750724e-08!GO:0051726;regulation of cell cycle;9.81278634414225e-08!GO:0009150;purine ribonucleotide metabolic process;1.17857070795419e-07!GO:0030163;protein catabolic process;1.17857070795419e-07!GO:0008135;translation factor activity, nucleic acid binding;1.31447526741024e-07!GO:0000278;mitotic cell cycle;1.68159294829825e-07!GO:0048193;Golgi vesicle transport;1.93915727411048e-07!GO:0042254;ribosome biogenesis and assembly;2.45083464746894e-07!GO:0000074;regulation of progression through cell cycle;2.69507262804584e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.74466520942871e-07!GO:0006461;protein complex assembly;2.95204850598903e-07!GO:0006333;chromatin assembly or disassembly;3.11341154203212e-07!GO:0006163;purine nucleotide metabolic process;3.11729769483717e-07!GO:0009259;ribonucleotide metabolic process;3.13595301262141e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.44598860862262e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.88416842318714e-07!GO:0008639;small protein conjugating enzyme activity;4.29996244435012e-07!GO:0043067;regulation of programmed cell death;4.57792666712159e-07!GO:0065004;protein-DNA complex assembly;5.0701181125764e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.141425393725e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.45466046736011e-07!GO:0006913;nucleocytoplasmic transport;5.49654070648678e-07!GO:0016604;nuclear body;5.59239275702639e-07!GO:0042981;regulation of apoptosis;5.59239275702639e-07!GO:0009152;purine ribonucleotide biosynthetic process;6.17078766827243e-07!GO:0009141;nucleoside triphosphate metabolic process;6.35655066848359e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.29747847862546e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.29747847862546e-07!GO:0017038;protein import;7.82931313183986e-07!GO:0004842;ubiquitin-protein ligase activity;8.4886887900389e-07!GO:0031988;membrane-bound vesicle;8.96713234071109e-07!GO:0000785;chromatin;9.71923304995222e-07!GO:0051169;nuclear transport;1.14534361037079e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.28289504566756e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.50061599496846e-06!GO:0016740;transferase activity;1.50943709515986e-06!GO:0005788;endoplasmic reticulum lumen;1.59998178558417e-06!GO:0006164;purine nucleotide biosynthetic process;1.67426160409533e-06!GO:0008565;protein transporter activity;2.03201972744818e-06!GO:0016564;transcription repressor activity;2.0644100304348e-06!GO:0019787;small conjugating protein ligase activity;2.09436518607693e-06!GO:0007005;mitochondrion organization and biogenesis;2.09901792834357e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.21096153073072e-06!GO:0009260;ribonucleotide biosynthetic process;2.39194147135746e-06!GO:0003924;GTPase activity;2.77842847396576e-06!GO:0009117;nucleotide metabolic process;2.92269187558033e-06!GO:0003714;transcription corepressor activity;3.39707913485861e-06!GO:0006334;nucleosome assembly;3.45026153470426e-06!GO:0016070;RNA metabolic process;3.45026153470426e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.52337190697061e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.52337190697061e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.58187169096506e-06!GO:0015986;ATP synthesis coupled proton transport;3.81984808979322e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.81984808979322e-06!GO:0046034;ATP metabolic process;3.85995646201483e-06!GO:0006446;regulation of translational initiation;3.88430677649258e-06!GO:0019829;cation-transporting ATPase activity;3.91892690414141e-06!GO:0005635;nuclear envelope;4.44997137546197e-06!GO:0043069;negative regulation of programmed cell death;4.44997137546197e-06!GO:0016563;transcription activator activity;4.56625485964342e-06!GO:0050794;regulation of cellular process;4.58591688068603e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.64532261037203e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.64532261037203e-06!GO:0016887;ATPase activity;4.64863359257167e-06!GO:0042623;ATPase activity, coupled;4.66835050939254e-06!GO:0003676;nucleic acid binding;4.70027032498673e-06!GO:0006916;anti-apoptosis;4.81242443571763e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.81838777492875e-06!GO:0031497;chromatin assembly;5.98872797855827e-06!GO:0003743;translation initiation factor activity;6.7712984437554e-06!GO:0005773;vacuole;6.85934289608536e-06!GO:0009108;coenzyme biosynthetic process;8.40713228460681e-06!GO:0043066;negative regulation of apoptosis;8.66225761120213e-06!GO:0031252;leading edge;8.70477390121116e-06!GO:0031410;cytoplasmic vesicle;8.78116997730745e-06!GO:0031982;vesicle;1.10717428010187e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.23804884916397e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.33635626520296e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.43197304445233e-05!GO:0030029;actin filament-based process;1.44102592853163e-05!GO:0016881;acid-amino acid ligase activity;1.71612747388988e-05!GO:0005768;endosome;1.93204497770489e-05!GO:0065002;intracellular protein transport across a membrane;1.97233571860415e-05!GO:0031965;nuclear membrane;1.99395959497063e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.03946528089158e-05!GO:0005694;chromosome;2.06550640694097e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.13625197937912e-05!GO:0044431;Golgi apparatus part;2.19031791663579e-05!GO:0044453;nuclear membrane part;2.19031791663579e-05!GO:0016491;oxidoreductase activity;2.19409553328172e-05!GO:0006754;ATP biosynthetic process;2.27442921267753e-05!GO:0006753;nucleoside phosphate metabolic process;2.27442921267753e-05!GO:0006399;tRNA metabolic process;2.44829011399074e-05!GO:0019899;enzyme binding;2.88528218592489e-05!GO:0006974;response to DNA damage stimulus;3.04819058476647e-05!GO:0009056;catabolic process;3.08112431500659e-05!GO:0045786;negative regulation of progression through cell cycle;3.24120650160473e-05!GO:0045259;proton-transporting ATP synthase complex;3.54702508128437e-05!GO:0044427;chromosomal part;3.6371737695565e-05!GO:0030120;vesicle coat;3.64675242990933e-05!GO:0030662;coated vesicle membrane;3.64675242990933e-05!GO:0048522;positive regulation of cellular process;3.70395260426648e-05!GO:0000323;lytic vacuole;3.71650012741785e-05!GO:0005764;lysosome;3.71650012741785e-05!GO:0051246;regulation of protein metabolic process;3.75016123625124e-05!GO:0006413;translational initiation;3.75016123625124e-05!GO:0016044;membrane organization and biogenesis;4.46954984309005e-05!GO:0006364;rRNA processing;4.87758054993941e-05!GO:0016607;nuclear speck;6.30664349027098e-05!GO:0045454;cell redox homeostasis;6.5810038249895e-05!GO:0031324;negative regulation of cellular metabolic process;7.70682089916217e-05!GO:0005762;mitochondrial large ribosomal subunit;7.72662622785687e-05!GO:0000315;organellar large ribosomal subunit;7.72662622785687e-05!GO:0009060;aerobic respiration;7.79725677155702e-05!GO:0048475;coated membrane;7.96527851330443e-05!GO:0030117;membrane coat;7.96527851330443e-05!GO:0022403;cell cycle phase;8.20622919880502e-05!GO:0016787;hydrolase activity;8.40946845994938e-05!GO:0016072;rRNA metabolic process;8.95239880576085e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000111025363819718!GO:0004812;aminoacyl-tRNA ligase activity;0.000111025363819718!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000111025363819718!GO:0005905;coated pit;0.000112615609524486!GO:0008361;regulation of cell size;0.000127565192143573!GO:0000786;nucleosome;0.000130614987367518!GO:0005839;proteasome core complex (sensu Eukaryota);0.000146424686280092!GO:0051170;nuclear import;0.000146865455476827!GO:0005770;late endosome;0.000154355222728497!GO:0016049;cell growth;0.000162154740541399!GO:0016568;chromatin modification;0.000162460466463382!GO:0008654;phospholipid biosynthetic process;0.000176881914868605!GO:0007067;mitosis;0.000187059401738432!GO:0003713;transcription coactivator activity;0.00019506162651097!GO:0001558;regulation of cell growth;0.000198344435048389!GO:0000087;M phase of mitotic cell cycle;0.000207080011197299!GO:0009719;response to endogenous stimulus;0.000215942172810593!GO:0019843;rRNA binding;0.000215942172810593!GO:0006606;protein import into nucleus;0.0002215419984743!GO:0005525;GTP binding;0.000244534972159501!GO:0000139;Golgi membrane;0.000250901831424849!GO:0005667;transcription factor complex;0.000268398792877526!GO:0007243;protein kinase cascade;0.000281675928520966!GO:0033116;ER-Golgi intermediate compartment membrane;0.00028411694309177!GO:0006752;group transfer coenzyme metabolic process;0.000311052455117886!GO:0006091;generation of precursor metabolites and energy;0.000322160935285461!GO:0043038;amino acid activation;0.000329527613148638!GO:0006418;tRNA aminoacylation for protein translation;0.000329527613148638!GO:0043039;tRNA aminoacylation;0.000329527613148638!GO:0050789;regulation of biological process;0.000336404503010444!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000342573057538114!GO:0005643;nuclear pore;0.000366746344572049!GO:0065009;regulation of a molecular function;0.000395332715297181!GO:0006888;ER to Golgi vesicle-mediated transport;0.000414797766038136!GO:0016853;isomerase activity;0.0004228084012334!GO:0000245;spliceosome assembly;0.000460930030843493!GO:0009892;negative regulation of metabolic process;0.000489537460323427!GO:0042802;identical protein binding;0.000494533999362567!GO:0032446;protein modification by small protein conjugation;0.000521956060436437!GO:0007010;cytoskeleton organization and biogenesis;0.000532517658970082!GO:0007264;small GTPase mediated signal transduction;0.00054081906507687!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000545153960260904!GO:0015399;primary active transmembrane transporter activity;0.000545153960260904!GO:0046930;pore complex;0.00055894329644588!GO:0015630;microtubule cytoskeleton;0.000642565704512781!GO:0004298;threonine endopeptidase activity;0.000746813728636272!GO:0030867;rough endoplasmic reticulum membrane;0.000779521363234866!GO:0016567;protein ubiquitination;0.000781073242239246!GO:0051789;response to protein stimulus;0.000806637047798026!GO:0006986;response to unfolded protein;0.000806637047798026!GO:0044440;endosomal part;0.000864322264162395!GO:0010008;endosome membrane;0.000864322264162395!GO:0051329;interphase of mitotic cell cycle;0.000866994281771888!GO:0045333;cellular respiration;0.000887017775544365!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000937542155481305!GO:0009165;nucleotide biosynthetic process;0.00104561148826059!GO:0001944;vasculature development;0.00109716225225539!GO:0006260;DNA replication;0.00114446214447174!GO:0007040;lysosome organization and biogenesis;0.00116325934545194!GO:0006281;DNA repair;0.00120025670292034!GO:0001568;blood vessel development;0.00123738922211687!GO:0005774;vacuolar membrane;0.00130985199124043!GO:0051427;hormone receptor binding;0.00134095091292196!GO:0008632;apoptotic program;0.00137077658695064!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0014546599702838!GO:0032561;guanyl ribonucleotide binding;0.0014546599702838!GO:0019001;guanyl nucleotide binding;0.0014546599702838!GO:0006979;response to oxidative stress;0.00150113892999356!GO:0008047;enzyme activator activity;0.0015870330712286!GO:0048518;positive regulation of biological process;0.00161557824857741!GO:0008092;cytoskeletal protein binding;0.00166281473930826!GO:0044262;cellular carbohydrate metabolic process;0.00182534078570444!GO:0016301;kinase activity;0.00182534078570444!GO:0051301;cell division;0.00182812343049905!GO:0046474;glycerophospholipid biosynthetic process;0.00188952285779825!GO:0007265;Ras protein signal transduction;0.00189467638661575!GO:0006099;tricarboxylic acid cycle;0.00190075072788633!GO:0046356;acetyl-CoA catabolic process;0.00190075072788633!GO:0016481;negative regulation of transcription;0.00194062221201641!GO:0000314;organellar small ribosomal subunit;0.00202794458438571!GO:0005763;mitochondrial small ribosomal subunit;0.00202794458438571!GO:0016779;nucleotidyltransferase activity;0.00208960082773391!GO:0004386;helicase activity;0.00213774847333481!GO:0030133;transport vesicle;0.00213774847333481!GO:0005813;centrosome;0.00219281559147883!GO:0000151;ubiquitin ligase complex;0.00224039437823761!GO:0008026;ATP-dependent helicase activity;0.00226379174631001!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00229081019119032!GO:0035257;nuclear hormone receptor binding;0.00229242780124484!GO:0043492;ATPase activity, coupled to movement of substances;0.00232987171898213!GO:0051348;negative regulation of transferase activity;0.00236561878497766!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00241076167165636!GO:0051325;interphase;0.00247255869754429!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00247632062780879!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00252186160761369!GO:0008637;apoptotic mitochondrial changes;0.00252186160761369!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00253905068523158!GO:0005769;early endosome;0.00255163376000892!GO:0043488;regulation of mRNA stability;0.00255163376000892!GO:0043487;regulation of RNA stability;0.00255163376000892!GO:0045941;positive regulation of transcription;0.00260618865126307!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00261640351371364!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00266504019891415!GO:0006897;endocytosis;0.00267570989762167!GO:0010324;membrane invagination;0.00267570989762167!GO:0016859;cis-trans isomerase activity;0.00279972100556362!GO:0030176;integral to endoplasmic reticulum membrane;0.00284622491108684!GO:0007006;mitochondrial membrane organization and biogenesis;0.00290568441827741!GO:0033673;negative regulation of kinase activity;0.00290568441827741!GO:0006469;negative regulation of protein kinase activity;0.00290568441827741!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00291537833689364!GO:0006084;acetyl-CoA metabolic process;0.00295719320968089!GO:0044437;vacuolar part;0.00307173598487328!GO:0005798;Golgi-associated vesicle;0.00310644467408058!GO:0006950;response to stress;0.00310821609707308!GO:0045893;positive regulation of transcription, DNA-dependent;0.00316026634866374!GO:0008250;oligosaccharyl transferase complex;0.00320701789399923!GO:0003697;single-stranded DNA binding;0.00333945513856117!GO:0007033;vacuole organization and biogenesis;0.00337707589680918!GO:0040008;regulation of growth;0.0034763831003459!GO:0005048;signal sequence binding;0.00358526051269192!GO:0031902;late endosome membrane;0.00366436378877669!GO:0051187;cofactor catabolic process;0.00402034677921494!GO:0048471;perinuclear region of cytoplasm;0.00403643478175066!GO:0005815;microtubule organizing center;0.00429243351006803!GO:0005765;lysosomal membrane;0.00430653515251804!GO:0000279;M phase;0.00445795445144509!GO:0006778;porphyrin metabolic process;0.00450669263322816!GO:0033013;tetrapyrrole metabolic process;0.00450669263322816!GO:0001836;release of cytochrome c from mitochondria;0.00450669263322816!GO:0030132;clathrin coat of coated pit;0.00453700391944924!GO:0043681;protein import into mitochondrion;0.00500765744999858!GO:0030027;lamellipodium;0.00514177200581138!GO:0009967;positive regulation of signal transduction;0.00532345375790161!GO:0051920;peroxiredoxin activity;0.00545033900452897!GO:0051087;chaperone binding;0.00558280592976554!GO:0005791;rough endoplasmic reticulum;0.0057190923164651!GO:0017166;vinculin binding;0.00581503184772369!GO:0043623;cellular protein complex assembly;0.00591542383521654!GO:0030041;actin filament polymerization;0.00630843671208278!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00675597053597202!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00691183344525094!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00691183344525094!GO:0006403;RNA localization;0.00719488526327704!GO:0009109;coenzyme catabolic process;0.00736760637569165!GO:0006779;porphyrin biosynthetic process;0.00745237616088922!GO:0033014;tetrapyrrole biosynthetic process;0.00745237616088922!GO:0005885;Arp2/3 protein complex;0.00764701938762179!GO:0003899;DNA-directed RNA polymerase activity;0.0080961408552869!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00839965069264209!GO:0050657;nucleic acid transport;0.00860825591524234!GO:0051236;establishment of RNA localization;0.00860825591524234!GO:0050658;RNA transport;0.00860825591524234!GO:0006509;membrane protein ectodomain proteolysis;0.00860837612739916!GO:0033619;membrane protein proteolysis;0.00860837612739916!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00861268357500141!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00861268357500141!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00861268357500141!GO:0051252;regulation of RNA metabolic process;0.00866492606269286!GO:0004576;oligosaccharyl transferase activity;0.00878481162769115!GO:0008610;lipid biosynthetic process;0.00880568683799457!GO:0019867;outer membrane;0.00900785040034633!GO:0048468;cell development;0.00903959478906028!GO:0007162;negative regulation of cell adhesion;0.00905173885762235!GO:0015992;proton transport;0.00906534719119942!GO:0005684;U2-dependent spliceosome;0.00906534719119942!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00906890552203451!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00910923002460981!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00921936406599826!GO:0030118;clathrin coat;0.00926175740110982!GO:0004674;protein serine/threonine kinase activity;0.00965439035657897!GO:0030308;negative regulation of cell growth;0.00974292760692985!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00982629996220229!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00993683555016849!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0100035390193767!GO:0043433;negative regulation of transcription factor activity;0.0101017747559749!GO:0006818;hydrogen transport;0.0102116217927603!GO:0031968;organelle outer membrane;0.0102116217927603!GO:0016126;sterol biosynthetic process;0.010336939303257!GO:0051101;regulation of DNA binding;0.0105351664054398!GO:0045792;negative regulation of cell size;0.0106230871949099!GO:0006740;NADPH regeneration;0.010760211400621!GO:0006098;pentose-phosphate shunt;0.010760211400621!GO:0005096;GTPase activator activity;0.0114338053890763!GO:0048514;blood vessel morphogenesis;0.0114419121456735!GO:0046467;membrane lipid biosynthetic process;0.0116465746501315!GO:0006414;translational elongation;0.0117665965285984!GO:0043021;ribonucleoprotein binding;0.0117665965285984!GO:0008154;actin polymerization and/or depolymerization;0.0121837316306594!GO:0030659;cytoplasmic vesicle membrane;0.0122236608861217!GO:0050790;regulation of catalytic activity;0.0124023387395746!GO:0046489;phosphoinositide biosynthetic process;0.0125267232710877!GO:0005083;small GTPase regulator activity;0.0126746982449625!GO:0045926;negative regulation of growth;0.0126877049835379!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0132769985619702!GO:0015002;heme-copper terminal oxidase activity;0.0132769985619702!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0132769985619702!GO:0004129;cytochrome-c oxidase activity;0.0132769985619702!GO:0030031;cell projection biogenesis;0.0133095527357104!GO:0030880;RNA polymerase complex;0.0134463444283005!GO:0004860;protein kinase inhibitor activity;0.0134463444283005!GO:0005741;mitochondrial outer membrane;0.0135880106572021!GO:0007266;Rho protein signal transduction;0.0136525033105642!GO:0005100;Rho GTPase activator activity;0.0138383371040037!GO:0065007;biological regulation;0.0140483358735411!GO:0030658;transport vesicle membrane;0.0140963700885374!GO:0001666;response to hypoxia;0.0144382125528786!GO:0006595;polyamine metabolic process;0.0145018817439964!GO:0007242;intracellular signaling cascade;0.0147244995982021!GO:0018196;peptidyl-asparagine modification;0.0147244995982021!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0147244995982021!GO:0051270;regulation of cell motility;0.0151845298736012!GO:0048660;regulation of smooth muscle cell proliferation;0.0155237100458354!GO:0003724;RNA helicase activity;0.0156623407445202!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0157871773444463!GO:0001953;negative regulation of cell-matrix adhesion;0.0159599552642907!GO:0001525;angiogenesis;0.0159623674261693!GO:0006839;mitochondrial transport;0.0162531903324798!GO:0031272;regulation of pseudopodium formation;0.0166617483622586!GO:0031269;pseudopodium formation;0.0166617483622586!GO:0031344;regulation of cell projection organization and biogenesis;0.0166617483622586!GO:0031268;pseudopodium organization and biogenesis;0.0166617483622586!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0166617483622586!GO:0031274;positive regulation of pseudopodium formation;0.0166617483622586!GO:0008139;nuclear localization sequence binding;0.016756705466311!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0169008117216527!GO:0022408;negative regulation of cell-cell adhesion;0.0170619164569353!GO:0030119;AP-type membrane coat adaptor complex;0.0175748598917188!GO:0006613;cotranslational protein targeting to membrane;0.0178980696904998!GO:0042168;heme metabolic process;0.018304570784925!GO:0022890;inorganic cation transmembrane transporter activity;0.0183844438799567!GO:0030131;clathrin adaptor complex;0.0187076224556593!GO:0008629;induction of apoptosis by intracellular signals;0.0189474003227572!GO:0003684;damaged DNA binding;0.0207717334442226!GO:0048487;beta-tubulin binding;0.0208722806338171!GO:0006402;mRNA catabolic process;0.0223502405313454!GO:0045892;negative regulation of transcription, DNA-dependent;0.0226587652706282!GO:0006626;protein targeting to mitochondrion;0.0229735060942816!GO:0040011;locomotion;0.0235789464627437!GO:0043086;negative regulation of catalytic activity;0.0236521464819275!GO:0015036;disulfide oxidoreductase activity;0.0243310861966289!GO:0043284;biopolymer biosynthetic process;0.024572376668614!GO:0043566;structure-specific DNA binding;0.0250449919702891!GO:0006695;cholesterol biosynthetic process;0.0256188548073133!GO:0044433;cytoplasmic vesicle part;0.0258782588617585!GO:0008283;cell proliferation;0.0260550673613182!GO:0003729;mRNA binding;0.0260550673613182!GO:0006013;mannose metabolic process;0.0260846894348817!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0260900416009907!GO:0031072;heat shock protein binding;0.0263547683248763!GO:0006650;glycerophospholipid metabolic process;0.0264098989908726!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0269131494196697!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0269766908686103!GO:0006289;nucleotide-excision repair;0.0273736263096376!GO:0035035;histone acetyltransferase binding;0.0274538458670363!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0275033415428347!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0275033415428347!GO:0000428;DNA-directed RNA polymerase complex;0.0275033415428347!GO:0050178;phenylpyruvate tautomerase activity;0.0276823984909229!GO:0043281;regulation of caspase activity;0.0276823984909229!GO:0030833;regulation of actin filament polymerization;0.0277632011899717!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0282638002885246!GO:0046822;regulation of nucleocytoplasmic transport;0.0285775018617644!GO:0030660;Golgi-associated vesicle membrane;0.0294167200800583!GO:0006783;heme biosynthetic process;0.0298605969180185!GO:0003756;protein disulfide isomerase activity;0.0302450958635357!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0302450958635357!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0303027065470271!GO:0007050;cell cycle arrest;0.0303027065470271!GO:0006012;galactose metabolic process;0.0303862558453503!GO:0006401;RNA catabolic process;0.0304320972877183!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0311609625043629!GO:0030663;COPI coated vesicle membrane;0.0317868912868395!GO:0030126;COPI vesicle coat;0.0317868912868395!GO:0007346;regulation of progression through mitotic cell cycle;0.0319353272125385!GO:0043065;positive regulation of apoptosis;0.0322269245152019!GO:0016272;prefoldin complex;0.0325204493231622!GO:0051059;NF-kappaB binding;0.0327198026895191!GO:0043068;positive regulation of programmed cell death;0.0327640615916651!GO:0051098;regulation of binding;0.0332411279793011!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0333884884544483!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0339095803578984!GO:0000305;response to oxygen radical;0.0342969979512784!GO:0001726;ruffle;0.0342969979512784!GO:0030137;COPI-coated vesicle;0.0342969979512784!GO:0003779;actin binding;0.0346558482857848!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0347819315800451!GO:0008186;RNA-dependent ATPase activity;0.0351328283887329!GO:0030032;lamellipodium biogenesis;0.0352102007500191!GO:0040012;regulation of locomotion;0.0354087061648211!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0354550570035397!GO:0040029;regulation of gene expression, epigenetic;0.0357711303037735!GO:0032507;maintenance of cellular protein localization;0.0359555048013498!GO:0022407;regulation of cell-cell adhesion;0.0362672351308148!GO:0045334;clathrin-coated endocytic vesicle;0.0367903600049344!GO:0019904;protein domain specific binding;0.0371116446396822!GO:0048659;smooth muscle cell proliferation;0.0371116446396822!GO:0005099;Ras GTPase activator activity;0.0373619144361232!GO:0006458;'de novo' protein folding;0.0375575319638664!GO:0051084;'de novo' posttranslational protein folding;0.0375575319638664!GO:0006790;sulfur metabolic process;0.0377750896574547!GO:0033559;unsaturated fatty acid metabolic process;0.0377945003976488!GO:0006636;unsaturated fatty acid biosynthetic process;0.0377945003976488!GO:0006497;protein amino acid lipidation;0.0379961720407849!GO:0016860;intramolecular oxidoreductase activity;0.0381040107380969!GO:0008538;proteasome activator activity;0.0383698240606807!GO:0008033;tRNA processing;0.0400412418151974!GO:0009966;regulation of signal transduction;0.0406688940102912!GO:0006612;protein targeting to membrane;0.0406688940102912!GO:0008286;insulin receptor signaling pathway;0.0411025266294922!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.041164527258404!GO:0030503;regulation of cell redox homeostasis;0.0418452598009305!GO:0006468;protein amino acid phosphorylation;0.0436893741048602!GO:0004177;aminopeptidase activity;0.0451819344180506!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0454198333106129!GO:0051028;mRNA transport;0.0455564433258275!GO:0000123;histone acetyltransferase complex;0.0457896932613032!GO:0051235;maintenance of localization;0.0458372847840851!GO:0019887;protein kinase regulator activity;0.0461992895860135!GO:0019210;kinase inhibitor activity;0.0463172576563045!GO:0006891;intra-Golgi vesicle-mediated transport;0.0463172576563045!GO:0030125;clathrin vesicle coat;0.0463455891890992!GO:0030665;clathrin coated vesicle membrane;0.0463455891890992!GO:0003711;transcription elongation regulator activity;0.0479173849117552!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0480744579621598!GO:0000118;histone deacetylase complex;0.0497596102249782!GO:0006917;induction of apoptosis;0.0498072446440139!GO:0006118;electron transport;0.0498072446440139 | |||
|sample_id=11783 | |sample_id=11783 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex= | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=RXR{A,B,G}:2.33875168456;SOX{8,9,10}:2.16812196966;TFAP2{A,C}:1.95353578548;PBX1:1.82229890546;ZIC1..3:1.79664624741;GTF2A1,2:1.76765694889;ZNF423:1.74077631701;TFAP4:1.5621963854;bHLH_family:1.50836932888;HES1:1.47390153043;TLX1..3_NFIC{dimer}:1.4504227543;SPZ1:1.36421786728;IKZF1:1.33068496137;HAND1,2:1.28306464831;HIC1:1.21105494858;XCPE1{core}:1.12082517634;ESRRA:1.06680193928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05867181713;ZNF148:1.00176120246;SP1:0.991019343009;EBF1:0.963916450297;TP53:0.908124527675;LHX3,4:0.898984665132;RXRA_VDR{dimer}:0.878339728527;NANOG:0.872216994512;NR6A1:0.859415545879;TFAP2B:0.80980072063;POU2F1..3:0.772340063469;REST:0.768403547635;FOXL1:0.709384351067;TBP:0.707507723343;PAX1,9:0.68185171704;ZBTB6:0.681175289651;PATZ1:0.661235139164;GZF1:0.660986500965;NR5A1,2:0.655726356368;GATA6:0.649105967173;GLI1..3:0.639438064649;ARID5B:0.618500355375;SRF:0.607865430745;AR:0.59598988651;ETS1,2:0.587080674615;PAX5:0.585139574759;SOX5:0.503991423483;MTE{core}:0.499257006417;ZNF238:0.475334419299;LEF1_TCF7_TCF7L1,2:0.46846763621;TEAD1:0.451161180013;SMAD1..7,9:0.446132427683;ESR1:0.44060178124;MYOD1:0.413150952421;STAT2,4,6:0.389540482561;MED-1{core}:0.357830125867;GFI1B:0.352460583874;POU6F1:0.351465794976;SOX2:0.350282953205;HNF4A_NR2F1,2:0.331473260828;ATF6:0.328777185542;RREB1:0.28835205606;NFATC1..3:0.288281453923;HMX1:0.268243504321;FOX{D1,D2}:0.254823082151;MTF1:0.244780150546;UFEwm:0.225872542795;LMO2:0.20873969152;SPIB:0.178151868209;GTF2I:0.160522185004;EP300:0.138716468409;PPARG:0.12872185366;HOX{A5,B5}:0.127420760206;NFE2:0.116927284272;NFKB1_REL_RELA:0.114738867026;NKX2-3_NKX2-5:0.110336914314;PAX6:0.0306542706154;SOX17:0.0159775849122;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0106814613216;HNF1A:0.0102904187782;HBP1_HMGB_SSRP1_UBTF:0.00795016349191;MAFB:-0.0129319866906;NR1H4:-0.0235749739019;FOXM1:-0.0432043405405;FOSL2:-0.0597415116946;BACH2:-0.112489846616;ATF2:-0.12420276278;ELF1,2,4:-0.124802940958;MAZ:-0.131347835295;ADNP_IRX_SIX_ZHX:-0.133896137007;GFI1:-0.145521324364;EGR1..3:-0.14607915307;TOPORS:-0.151620944039;NFY{A,B,C}:-0.162927799025;NR3C1:-0.164171725876;MEF2{A,B,C,D}:-0.195803647085;TFCP2:-0.216455064704;FOS_FOS{B,L1}_JUN{B,D}:-0.220731974639;SNAI1..3:-0.23124640684;NFE2L1:-0.233663216772;POU3F1..4:-0.234072935199;IKZF2:-0.252088419532;CREB1:-0.267423868581;SPI1:-0.275989670994;MZF1:-0.280455076586;XBP1:-0.308583873754;STAT5{A,B}:-0.309852822521;ONECUT1,2:-0.321369917054;HOX{A6,A7,B6,B7}:-0.324802832765;ZFP161:-0.344730282729;T:-0.35514189723;ZEB1:-0.356717662235;JUN:-0.368903789314;TAL1_TCF{3,4,12}:-0.380549639191;IRF1,2:-0.387854300627;ZNF143:-0.390741525797;HOXA9_MEIS1:-0.39170973877;FOXQ1:-0.42985697702;YY1:-0.443706631892;NFE2L2:-0.457141512199;ALX4:-0.460105635907;CUX2:-0.462018391047;PITX1..3:-0.476092270354;GCM1,2:-0.507665130179;NANOG{mouse}:-0.516718112756;E2F1..5:-0.517606670733;SREBF1,2:-0.51865222547;MYB:-0.518975034014;FOXA2:-0.544501375656;RORA:-0.54822139126;NHLH1,2:-0.588872049681;RUNX1..3:-0.597821137242;HIF1A:-0.604808317565;PAX8:-0.636894264073;TFDP1:-0.644060243005;NKX3-1:-0.670742668978;RBPJ:-0.674847309159;ATF4:-0.684626019329;MYFfamily:-0.708900423454;HLF:-0.727916149479;NKX3-2:-0.785933225467;TEF:-0.798221497313;RFX1:-0.821912224189;CDC5L:-0.835690761868;NKX2-2,8:-0.849620758672;CEBPA,B_DDIT3:-0.849804545004;FOX{I1,J2}:-0.865458661241;PAX3,7:-0.907674212825;STAT1,3:-0.914168473802;HSF1,2:-0.951799431463;POU5F1:-0.95317336197;IRF7:-0.959082237974;KLF4:-0.964928175116;GATA4:-0.988348650789;PRDM1:-1.01696143845;FOX{F1,F2,J1}:-1.04229080314;BPTF:-1.08004368898;PRRX1,2:-1.09089234492;FOXD3:-1.09325731297;PAX2:-1.10412906175;DMAP1_NCOR{1,2}_SMARC:-1.12190623319;EVI1:-1.12449310177;AHR_ARNT_ARNT2:-1.1262066224;NRF1:-1.14904837619;ATF5_CREB3:-1.15053032681;CRX:-1.15461731706;TBX4,5:-1.15467286156;EN1,2:-1.16935941104;BREu{core}:-1.17597956898;NFIX:-1.28211162171;DBP:-1.28220088051;ZNF384:-1.28411913435;MYBL2:-1.33299064565;PAX4:-1.34903722119;POU1F1:-1.35980799744;AIRE:-1.39121428822;TLX2:-1.40695994069;RFX2..5_RFXANK_RFXAP:-1.43652766938;OCT4_SOX2{dimer}:-1.44651922734;HMGA1,2:-1.4548792959;ELK1,4_GABP{A,B1}:-1.46382784614;PDX1:-1.47527019626;FOXN1:-1.47647368879;TGIF1:-1.49182902342;NFIL3:-1.511702569;NKX2-1,4:-1.56408220445;ALX1:-1.68115139888;FOXO1,3,4:-1.74841253642;VSX1,2:-1.78747662774;FOXP1:-1.82682713286;FOXP3:-1.8542592104;ZBTB16:-1.97778066608;HOX{A4,D4}:-2.23555797007;NKX6-1,2:-2.50279333952;CDX1,2,4:-2.7743088936 | |top_motifs=RXR{A,B,G}:2.33875168456;SOX{8,9,10}:2.16812196966;TFAP2{A,C}:1.95353578548;PBX1:1.82229890546;ZIC1..3:1.79664624741;GTF2A1,2:1.76765694889;ZNF423:1.74077631701;TFAP4:1.5621963854;bHLH_family:1.50836932888;HES1:1.47390153043;TLX1..3_NFIC{dimer}:1.4504227543;SPZ1:1.36421786728;IKZF1:1.33068496137;HAND1,2:1.28306464831;HIC1:1.21105494858;XCPE1{core}:1.12082517634;ESRRA:1.06680193928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05867181713;ZNF148:1.00176120246;SP1:0.991019343009;EBF1:0.963916450297;TP53:0.908124527675;LHX3,4:0.898984665132;RXRA_VDR{dimer}:0.878339728527;NANOG:0.872216994512;NR6A1:0.859415545879;TFAP2B:0.80980072063;POU2F1..3:0.772340063469;REST:0.768403547635;FOXL1:0.709384351067;TBP:0.707507723343;PAX1,9:0.68185171704;ZBTB6:0.681175289651;PATZ1:0.661235139164;GZF1:0.660986500965;NR5A1,2:0.655726356368;GATA6:0.649105967173;GLI1..3:0.639438064649;ARID5B:0.618500355375;SRF:0.607865430745;AR:0.59598988651;ETS1,2:0.587080674615;PAX5:0.585139574759;SOX5:0.503991423483;MTE{core}:0.499257006417;ZNF238:0.475334419299;LEF1_TCF7_TCF7L1,2:0.46846763621;TEAD1:0.451161180013;SMAD1..7,9:0.446132427683;ESR1:0.44060178124;MYOD1:0.413150952421;STAT2,4,6:0.389540482561;MED-1{core}:0.357830125867;GFI1B:0.352460583874;POU6F1:0.351465794976;SOX2:0.350282953205;HNF4A_NR2F1,2:0.331473260828;ATF6:0.328777185542;RREB1:0.28835205606;NFATC1..3:0.288281453923;HMX1:0.268243504321;FOX{D1,D2}:0.254823082151;MTF1:0.244780150546;UFEwm:0.225872542795;LMO2:0.20873969152;SPIB:0.178151868209;GTF2I:0.160522185004;EP300:0.138716468409;PPARG:0.12872185366;HOX{A5,B5}:0.127420760206;NFE2:0.116927284272;NFKB1_REL_RELA:0.114738867026;NKX2-3_NKX2-5:0.110336914314;PAX6:0.0306542706154;SOX17:0.0159775849122;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0106814613216;HNF1A:0.0102904187782;HBP1_HMGB_SSRP1_UBTF:0.00795016349191;MAFB:-0.0129319866906;NR1H4:-0.0235749739019;FOXM1:-0.0432043405405;FOSL2:-0.0597415116946;BACH2:-0.112489846616;ATF2:-0.12420276278;ELF1,2,4:-0.124802940958;MAZ:-0.131347835295;ADNP_IRX_SIX_ZHX:-0.133896137007;GFI1:-0.145521324364;EGR1..3:-0.14607915307;TOPORS:-0.151620944039;NFY{A,B,C}:-0.162927799025;NR3C1:-0.164171725876;MEF2{A,B,C,D}:-0.195803647085;TFCP2:-0.216455064704;FOS_FOS{B,L1}_JUN{B,D}:-0.220731974639;SNAI1..3:-0.23124640684;NFE2L1:-0.233663216772;POU3F1..4:-0.234072935199;IKZF2:-0.252088419532;CREB1:-0.267423868581;SPI1:-0.275989670994;MZF1:-0.280455076586;XBP1:-0.308583873754;STAT5{A,B}:-0.309852822521;ONECUT1,2:-0.321369917054;HOX{A6,A7,B6,B7}:-0.324802832765;ZFP161:-0.344730282729;T:-0.35514189723;ZEB1:-0.356717662235;JUN:-0.368903789314;TAL1_TCF{3,4,12}:-0.380549639191;IRF1,2:-0.387854300627;ZNF143:-0.390741525797;HOXA9_MEIS1:-0.39170973877;FOXQ1:-0.42985697702;YY1:-0.443706631892;NFE2L2:-0.457141512199;ALX4:-0.460105635907;CUX2:-0.462018391047;PITX1..3:-0.476092270354;GCM1,2:-0.507665130179;NANOG{mouse}:-0.516718112756;E2F1..5:-0.517606670733;SREBF1,2:-0.51865222547;MYB:-0.518975034014;FOXA2:-0.544501375656;RORA:-0.54822139126;NHLH1,2:-0.588872049681;RUNX1..3:-0.597821137242;HIF1A:-0.604808317565;PAX8:-0.636894264073;TFDP1:-0.644060243005;NKX3-1:-0.670742668978;RBPJ:-0.674847309159;ATF4:-0.684626019329;MYFfamily:-0.708900423454;HLF:-0.727916149479;NKX3-2:-0.785933225467;TEF:-0.798221497313;RFX1:-0.821912224189;CDC5L:-0.835690761868;NKX2-2,8:-0.849620758672;CEBPA,B_DDIT3:-0.849804545004;FOX{I1,J2}:-0.865458661241;PAX3,7:-0.907674212825;STAT1,3:-0.914168473802;HSF1,2:-0.951799431463;POU5F1:-0.95317336197;IRF7:-0.959082237974;KLF4:-0.964928175116;GATA4:-0.988348650789;PRDM1:-1.01696143845;FOX{F1,F2,J1}:-1.04229080314;BPTF:-1.08004368898;PRRX1,2:-1.09089234492;FOXD3:-1.09325731297;PAX2:-1.10412906175;DMAP1_NCOR{1,2}_SMARC:-1.12190623319;EVI1:-1.12449310177;AHR_ARNT_ARNT2:-1.1262066224;NRF1:-1.14904837619;ATF5_CREB3:-1.15053032681;CRX:-1.15461731706;TBX4,5:-1.15467286156;EN1,2:-1.16935941104;BREu{core}:-1.17597956898;NFIX:-1.28211162171;DBP:-1.28220088051;ZNF384:-1.28411913435;MYBL2:-1.33299064565;PAX4:-1.34903722119;POU1F1:-1.35980799744;AIRE:-1.39121428822;TLX2:-1.40695994069;RFX2..5_RFXANK_RFXAP:-1.43652766938;OCT4_SOX2{dimer}:-1.44651922734;HMGA1,2:-1.4548792959;ELK1,4_GABP{A,B1}:-1.46382784614;PDX1:-1.47527019626;FOXN1:-1.47647368879;TGIF1:-1.49182902342;NFIL3:-1.511702569;NKX2-1,4:-1.56408220445;ALX1:-1.68115139888;FOXO1,3,4:-1.74841253642;VSX1,2:-1.78747662774;FOXP1:-1.82682713286;FOXP3:-1.8542592104;ZBTB16:-1.97778066608;HOX{A4,D4}:-2.23555797007;NKX6-1,2:-2.50279333952;CDX1,2,4:-2.7743088936 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11783-124B1;search_select_hide=table117:FF:11783-124B1 | |||
}} | }} | ||
Latest revision as of 18:20, 4 June 2020
| Name: | Renal Glomerular Endothelial Cells, donor4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13080 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13080
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13080
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.822 |
| 10 | 10 | 0.312 |
| 100 | 100 | 0.456 |
| 101 | 101 | 0.0515 |
| 102 | 102 | 0.628 |
| 103 | 103 | 0.853 |
| 104 | 104 | 0.136 |
| 105 | 105 | 0.303 |
| 106 | 106 | 0.0336 |
| 107 | 107 | 0.00978 |
| 108 | 108 | 0.303 |
| 109 | 109 | 0.104 |
| 11 | 11 | 0.163 |
| 110 | 110 | 0.173 |
| 111 | 111 | 0.846 |
| 112 | 112 | 0.78 |
| 113 | 113 | 0.265 |
| 114 | 114 | 0.749 |
| 115 | 115 | 0.0837 |
| 116 | 116 | 0.897 |
| 117 | 117 | 0.676 |
| 118 | 118 | 0.769 |
| 119 | 119 | 0.221 |
| 12 | 12 | 0.701 |
| 120 | 120 | 0.0623 |
| 121 | 121 | 0.626 |
| 122 | 122 | 0.788 |
| 123 | 123 | 0.0476 |
| 124 | 124 | 0.308 |
| 125 | 125 | 0.388 |
| 126 | 126 | 0.987 |
| 127 | 127 | 0.833 |
| 128 | 128 | 0.191 |
| 129 | 129 | 0.0944 |
| 13 | 13 | 0.396 |
| 130 | 130 | 0.948 |
| 131 | 131 | 0.175 |
| 132 | 132 | 0.179 |
| 133 | 133 | 0.307 |
| 134 | 134 | 0.526 |
| 135 | 135 | 0.34 |
| 136 | 136 | 0.692 |
| 137 | 137 | 0.311 |
| 138 | 138 | 0.791 |
| 139 | 139 | 0.509 |
| 14 | 14 | 0.869 |
| 140 | 140 | 0.192 |
| 141 | 141 | 0.679 |
| 142 | 142 | 0.898 |
| 143 | 143 | 0.215 |
| 144 | 144 | 0.503 |
| 145 | 145 | 0.278 |
| 146 | 146 | 0.409 |
| 147 | 147 | 0.35 |
| 148 | 148 | 0.281 |
| 149 | 149 | 0.1 |
| 15 | 15 | 0.341 |
| 150 | 150 | 0.286 |
| 151 | 151 | 0.615 |
| 152 | 152 | 0.0189 |
| 153 | 153 | 0.179 |
| 154 | 154 | 0.272 |
| 155 | 155 | 0.0497 |
| 156 | 156 | 0.265 |
| 157 | 157 | 0.807 |
| 158 | 158 | 0.993 |
| 159 | 159 | 0.364 |
| 16 | 16 | 0.589 |
| 160 | 160 | 0.00647 |
| 161 | 161 | 0.934 |
| 162 | 162 | 0.192 |
| 163 | 163 | 0.726 |
| 164 | 164 | 0.72 |
| 165 | 165 | 0.111 |
| 166 | 166 | 0.284 |
| 167 | 167 | 0.19 |
| 168 | 168 | 0.984 |
| 169 | 169 | 0.0908 |
| 17 | 17 | 0.388 |
| 18 | 18 | 0.647 |
| 19 | 19 | 0.149 |
| 2 | 2 | 0.328 |
| 20 | 20 | 0.378 |
| 21 | 21 | 0.673 |
| 22 | 22 | 0.155 |
| 23 | 23 | 0.308 |
| 24 | 24 | 0.8 |
| 25 | 25 | 0.276 |
| 26 | 26 | 0.281 |
| 27 | 27 | 0.321 |
| 28 | 28 | 0.135 |
| 29 | 29 | 0.987 |
| 3 | 3 | 0.968 |
| 30 | 30 | 0.395 |
| 31 | 31 | 0.433 |
| 32 | 32 | 0.0136 |
| 33 | 33 | 0.42 |
| 34 | 34 | 0.0863 |
| 35 | 35 | 0.592 |
| 36 | 36 | 0.163 |
| 37 | 37 | 0.203 |
| 38 | 38 | 0.267 |
| 39 | 39 | 0.133 |
| 4 | 4 | 0.297 |
| 40 | 40 | 0.00691 |
| 41 | 41 | 0.715 |
| 42 | 42 | 0.966 |
| 43 | 43 | 0.776 |
| 44 | 44 | 0.994 |
| 45 | 45 | 0.156 |
| 46 | 46 | 0.591 |
| 47 | 47 | 0.594 |
| 48 | 48 | 0.379 |
| 49 | 49 | 0.948 |
| 5 | 5 | 0.59 |
| 50 | 50 | 0.579 |
| 51 | 51 | 0.408 |
| 52 | 52 | 0.692 |
| 53 | 53 | 0.306 |
| 54 | 54 | 0.402 |
| 55 | 55 | 0.618 |
| 56 | 56 | 0.367 |
| 57 | 57 | 0.876 |
| 58 | 58 | 0.303 |
| 59 | 59 | 0.0109 |
| 6 | 6 | 0.408 |
| 60 | 60 | 0.803 |
| 61 | 61 | 0.939 |
| 62 | 62 | 0.244 |
| 63 | 63 | 0.488 |
| 64 | 64 | 0.264 |
| 65 | 65 | 0.0363 |
| 66 | 66 | 0.955 |
| 67 | 67 | 0.498 |
| 68 | 68 | 0.0458 |
| 69 | 69 | 0.167 |
| 7 | 7 | 0.595 |
| 70 | 70 | 0.35 |
| 71 | 71 | 0.41 |
| 72 | 72 | 0.431 |
| 73 | 73 | 0.00477 |
| 74 | 74 | 0.297 |
| 75 | 75 | 0.551 |
| 76 | 76 | 0.171 |
| 77 | 77 | 0.093 |
| 78 | 78 | 0.194 |
| 79 | 79 | 0.00253 |
| 8 | 8 | 0.134 |
| 80 | 80 | 0.931 |
| 81 | 81 | 0.39 |
| 82 | 82 | 0.372 |
| 83 | 83 | 0.384 |
| 84 | 84 | 0.155 |
| 85 | 85 | 0.205 |
| 86 | 86 | 0.981 |
| 87 | 87 | 0.307 |
| 88 | 88 | 0.835 |
| 89 | 89 | 0.706 |
| 9 | 9 | 0.365 |
| 90 | 90 | 0.0163 |
| 91 | 91 | 0.194 |
| 92 | 92 | 0.878 |
| 93 | 93 | 0.331 |
| 94 | 94 | 0.506 |
| 95 | 95 | 0.116 |
| 96 | 96 | 0.384 |
| 97 | 97 | 0.547 |
| 98 | 98 | 0.688 |
| 99 | 99 | 0.145 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13080
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
