FFCP PHASE1:Hg19::chr20:6034607..6034616,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:6034607..6034616,- to FFCP PHASE1:Hg19::chr20:6034607..6034616,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=164312 | |EntrezGene=164312 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16208 | |HGNC=16208 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WUT4,Q6ZMD1 | |UniProt=Q8WUT4,Q6ZMD1 | ||
|association_with_transcript=77bp_to_NM_152611,uc002wmo.2,uc002wmp.2_5end | |||
|cluster_id=chr20:6034607..6034616,- | |||
|coexpression_cluster_id=C548 | |||
|description=CAGE_peak_6_at_LRRN4_5end | |||
|id=chr20:6034607..6034616,- | |||
|ontology_enrichment_celltype=CL:1000507!4.15e-33!12;CL:1000494!4.15e-33!12;CL:1000497!1.03e-30!18;CL:0002518!1.03e-30!18;CL:1000449!2.14e-29!16;CL:0002681!2.42e-19!13;CL:0002584!2.42e-19!13;CL:0000239!3.36e-13!3;CL:1000615!3.36e-13!3;CL:0002306!3.36e-13!3;CL:0000077!1.30e-12!19;CL:0000066!5.80e-10!254;CL:0000632!2.05e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:1000507;2.15e-72;10!CL:1000494;2.15e-72;10!CL:1000449;5.84e-59;15!CL:1000497;7.17e-52;17!CL:0002518;7.17e-52;17!CL:0002681;2.01e-36;12!CL:0002584;2.01e-36;12!CL:0000650;1.08e-19;2!CL:1000500;1.08e-19;2!CL:1000618;1.08e-19;2!CL:1001318;1.08e-19;2!CL:0002173;1.08e-19;2!CL:0000077;8.19e-17;19!CL:0000239;2.18e-13;3!CL:1000615;2.18e-13;3!CL:0002306;2.18e-13;3!CL:0000632;3.79e-13;3!CL:1000746;2.06e-12;7!CL:1000612;2.06e-12;7!CL:0000669;2.56e-10;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.31e-72,10;CL:1000494,1.31e-72,10;CL:1000449,4.45e-59,15;CL:1000497,5.64e-52,17;CL:0002518,5.64e-52,17;CL:0002681,1.63e-36,12;CL:0002584,1.63e-36,12;CL:0000650,1.13e-19,2;CL:1000500,1.13e-19,2;CL:1000618,1.13e-19,2;CL:1001318,1.13e-19,2;CL:0002173,1.13e-19,2;CL:0000077,9.56e-17,19;CL:0000239,2.05e-13,3;CL:1000615,2.05e-13,3;CL:0002306,2.05e-13,3;CL:0000632,3.79e-13,3;CL:1000746,2.23e-12,7;CL:1000612,2.23e-12,7;CL:0000669,2.62e-10,4;CL:0000213,6.69e-07,58;CL:0000215,6.69e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!1.99e-11!29;DOID:120!4.10e-10!27;DOID:4468!1.02e-08!2;DOID:2394!5.76e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009773!4.15e-33!12;UBERON:0001231!4.15e-33!12;UBERON:0004810!4.15e-33!12;UBERON:0004211!2.14e-29!16;UBERON:0001285!2.14e-29!16;UBERON:0007684!2.14e-29!16;UBERON:0003220!2.14e-29!16;UBERON:0004208!2.14e-29!16;UBERON:0006555!1.60e-27!17;UBERON:0005103!1.60e-27!17;UBERON:0000083!1.60e-27!17;UBERON:0009201!1.60e-27!17;UBERON:0004819!1.60e-27!17;UBERON:0006553!1.60e-27!17;UBERON:0003074!1.60e-27!17;UBERON:0003060!1.60e-27!17;UBERON:0002113!1.57e-26!27;UBERON:0003918!1.57e-26!27;UBERON:0005095!1.57e-26!27;UBERON:0007687!1.57e-26!27;UBERON:0000080!7.42e-26!18;UBERON:0002120!7.42e-26!18;UBERON:0004875!7.42e-26!18;UBERON:0005721!7.42e-26!18;UBERON:0005754!7.42e-26!18;UBERON:0007297!7.42e-26!18;UBERON:0005172!2.52e-24!55;UBERON:0005173!2.52e-24!55;UBERON:0004876!5.03e-23!20;UBERON:0000489!7.39e-22!32;UBERON:0003887!8.21e-22!21;UBERON:0002417!1.94e-21!61;UBERON:0000916!1.94e-21!61;UBERON:0000058!2.81e-20!26;UBERON:0006554!1.16e-19!44;UBERON:0001851!1.57e-19!16;UBERON:0001225!2.42e-19!13;UBERON:0008987!2.42e-19!13;UBERON:0001008!3.86e-19!45;UBERON:0003064!1.88e-18!37;UBERON:0000353!1.86e-14!17;UBERON:0003886!1.90e-14!63;UBERON:0005177!4.42e-14!107;UBERON:0000466!1.39e-13!126;UBERON:0006853!3.36e-13!3;UBERON:0007685!3.36e-13!3;UBERON:0004134!3.36e-13!3;UBERON:0009569!4.87e-13!113;UBERON:0002553!1.35e-12!70;UBERON:0000464!1.49e-10!104;UBERON:0003103!9.54e-10!69;UBERON:0003914!9.29e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.15e-72;10!UBERON:0009773;2.15e-72;10!UBERON:0001231;2.15e-72;10!UBERON:0004810;2.15e-72;10!UBERON:0006555;5.84e-59;15!UBERON:0004819;5.84e-59;15!UBERON:0001285;5.84e-59;15!UBERON:0007684;5.84e-59;15!UBERON:0001851;1.18e-37;15!UBERON:0001225;2.01e-36;12!UBERON:0008987;2.01e-36;12!UBERON:0002113;2.37e-36;24!UBERON:0011143;2.37e-36;24!UBERON:0000489;7.60e-30;29!UBERON:0000353;5.06e-29;15!UBERON:0006554;8.36e-29;30!UBERON:0001008;8.36e-29;30!UBERON:0005172;7.73e-20;52!UBERON:0005173;7.73e-20;52!UBERON:0003567;1.08e-19;2!UBERON:0003838;1.08e-19;2!UBERON:0003586;1.08e-19;2!UBERON:0005169;1.08e-19;2!UBERON:0002321;1.08e-19;2!UBERON:0005215;1.08e-19;2!UBERON:0002303;1.08e-19;2!UBERON:0002319;1.08e-19;2!UBERON:0002417;1.85e-14;58!UBERON:0000916;1.85e-14;58!UBERON:0006853;2.18e-13;3!UBERON:0007685;2.18e-13;3!UBERON:0004134;2.18e-13;3!UBERON:0000074;2.06e-12;7!UBERON:0001229;2.06e-12;7!UBERON:0003891;2.56e-10;4!UBERON:0005177;2.40e-09;99!UBERON:0002118;4.86e-08;5!UBERON:0003103;4.05e-07;61!UBERON:0003914;4.77e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.31e-72,10;UBERON:0004211,4.45e-59,15;UBERON:0009773,4.45e-59,15;UBERON:0001231,4.45e-59,15;UBERON:0001285,4.45e-59,15;UBERON:0007684,4.45e-59,15;UBERON:0004208,4.45e-59,15;UBERON:0006555,2.64e-55,16;UBERON:0004819,2.64e-55,16;UBERON:0001851,8.64e-38,15;UBERON:0001225,1.63e-36,12;UBERON:0008987,1.63e-36,12;UBERON:0002113,1.62e-33,26;UBERON:0003918,1.62e-33,26;UBERON:0011143,1.62e-33,26;UBERON:0005095,1.62e-33,26;UBERON:0007687,1.62e-33,26;UBERON:0000353,4.28e-29,15;UBERON:0000489,6.93e-28,31;UBERON:0005172,2.56e-26,54;UBERON:0005173,2.56e-26,54;UBERON:0002417,1.77e-23,60;UBERON:0000916,1.77e-23,60;UBERON:0003567,1.13e-19,2;UBERON:0003838,1.13e-19,2;UBERON:0003586,1.13e-19,2;UBERON:0005169,1.13e-19,2;UBERON:0002321,1.13e-19,2;UBERON:0005215,1.13e-19,2;UBERON:0002303,1.13e-19,2;UBERON:0002319,1.13e-19,2;UBERON:0006554,6.68e-18,47;UBERON:0001008,1.69e-17,48;UBERON:0006853,2.05e-13,3;UBERON:0007685,2.05e-13,3;UBERON:0004134,2.05e-13,3;UBERON:0005177,4.35e-13,101;UBERON:0010532,2.23e-12,7;UBERON:0000074,2.23e-12,7;UBERON:0001229,2.23e-12,7;UBERON:0001230,2.23e-12,7;UBERON:0003220,2.23e-12,7;UBERON:0005749,2.23e-12,7;UBERON:0004199,2.23e-12,7;UBERON:0004209,2.23e-12,7;UBERON:0004198,2.23e-12,7;UBERON:0003103,6.50e-12,68;UBERON:0009569,1.37e-11,112;UBERON:0005103,6.72e-11,8;UBERON:0000083,6.72e-11,8;UBERON:0009201,6.72e-11,8;UBERON:0006553,6.72e-11,8;UBERON:0003074,6.72e-11,8;UBERON:0003060,6.72e-11,8;UBERON:0003891,2.62e-10,4;UBERON:0000080,9.57e-10,9;UBERON:0002120,9.57e-10,9;UBERON:0004875,9.57e-10,9;UBERON:0005721,9.57e-10,9;UBERON:0005754,9.57e-10,9;UBERON:0007297,9.57e-10,9;UBERON:0003914,2.85e-09,117;UBERON:0004876,4.62e-08,11;UBERON:0002118,4.69e-08,5;UBERON:0003104,1.83e-07,160;UBERON:0009142,1.83e-07,160;UBERON:0003887,1.98e-07,12 | |||
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|short_description=p6@LRRN4 | |||
}} | }} |
Latest revision as of 09:45, 17 September 2015
Short description: | p6@LRRN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LRRN4_5end |
Coexpression cluster: | C548_Mesothelial_mesenchymal_rhabdomyosarcoma_Renal_mesothelioma_Hepatic_clear |
Association with transcript: | 77bp_to_NM_152611, uc002wmo.2, uc002wmp.2_5end |
EntrezGene: | LRRN4 |
HGNC: | 16208 |
UniProt: | Q8WUT4Q6ZMD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.31e-72 | 10 |
nephron tubule epithelial cell | 1.31e-72 | 10 |
epithelial cell of nephron | 4.45e-59 | 15 |
kidney cell | 5.64e-52 | 17 |
kidney epithelial cell | 5.64e-52 | 17 |
kidney cortical cell | 1.63e-36 | 12 |
renal cortical epithelial cell | 1.63e-36 | 12 |
mesangial cell | 1.13e-19 | 2 |
kidney interstitial cell | 1.13e-19 | 2 |
juxtaglomerular complex cell | 1.13e-19 | 2 |
renal interstitial pericyte | 1.13e-19 | 2 |
extraglomerular mesangial cell | 1.13e-19 | 2 |
mesothelial cell | 9.56e-17 | 19 |
brush border epithelial cell | 2.05e-13 | 3 |
kidney cortex tubule cell | 2.05e-13 | 3 |
epithelial cell of proximal tubule | 2.05e-13 | 3 |
hepatic stellate cell | 3.79e-13 | 3 |
glomerular cell | 2.23e-12 | 7 |
kidney corpuscule cell | 2.23e-12 | 7 |
pericyte cell | 2.62e-10 | 4 |
lining cell | 6.69e-07 | 58 |
barrier cell | 6.69e-07 | 58 |