FFCP PHASE1:Hg19::chr17:35294075..35294102,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:35294075..35294102,+ to FFCP PHASE1:Hg19::chr17:35294075..35294102,+: NSchange) |
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3975 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=0bp_to_ENST00000559335_5end | |||
|cluster_id=chr17:35294075..35294102,+ | |||
|coexpression_cluster_id=C3624 | |||
|description=CAGE_peak_7_at_LHX1_5end | |||
|id=chr17:35294075..35294102,+ | |id=chr17:35294075..35294102,+ | ||
| | |ontology_enrichment_celltype=CL:0000066!1.10e-13!254;CL:1000497!6.17e-13!18;CL:0002518!6.17e-13!18;CL:1000507!4.86e-12!12;CL:1000494!4.86e-12!12;CL:1000449!1.66e-11!16;CL:0002681!3.15e-08!13;CL:0002584!3.15e-08!13;CL:0000077!6.50e-07!19 | ||
| | |ontology_enrichment_celltype_v019=CL:1000507;3.41e-21;10!CL:1000494;3.41e-21;10!CL:1000449;1.31e-18;15!CL:1000497;1.46e-18;17!CL:0002518;1.46e-18;17!CL:0002681;6.10e-13;12!CL:0002584;6.10e-13;12!CL:0000239;4.01e-07;3!CL:1000615;4.01e-07;3!CL:0002306;4.01e-07;3 | ||
| | |ontology_enrichment_celltype_v019_2=CL:1000507,3.39e-21,10;CL:1000494,3.39e-21,10;CL:1000449,1.25e-18,15;CL:1000497,1.29e-18,17;CL:0002518,1.29e-18,17;CL:0002681,5.77e-13,12;CL:0002584,5.77e-13,12;CL:0000066,3.90e-11,253;CL:0000239,3.97e-07,3;CL:1000615,3.97e-07,3;CL:0002306,3.97e-07,3 | ||
| | |ontology_enrichment_development_v019=UBERON:0003918;1.98e-09;10!UBERON:0007687;1.98e-09;10!UBERON:0006215;7.42e-08;3 | ||
| | |ontology_enrichment_disease=DOID:305!1.92e-13!106;DOID:0050687!8.72e-13!143;DOID:162!1.17e-10!235;DOID:14566!5.52e-10!239;DOID:1749!2.70e-07!14 | ||
| | |ontology_enrichment_disease_v019=DOID:299;2.75e-09;25 | ||
|ontology_enrichment_disease_v019_2=DOID:305,4.33e-13,106;DOID:0050687,5.09e-11,143;DOID:299,2.52e-09,25;DOID:162,1.14e-07,235;DOID:14566,2.83e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000489!6.67e-24!32;UBERON:0002113!7.56e-20!27;UBERON:0003918!7.56e-20!27;UBERON:0005095!7.56e-20!27;UBERON:0007687!7.56e-20!27;UBERON:0006554!4.14e-14!44;UBERON:0001008!1.39e-13!45;UBERON:0000080!1.55e-13!18;UBERON:0002120!1.55e-13!18;UBERON:0004875!1.55e-13!18;UBERON:0005721!1.55e-13!18;UBERON:0005754!1.55e-13!18;UBERON:0007297!1.55e-13!18;UBERON:0003076!5.37e-13!15;UBERON:0003057!5.37e-13!15;UBERON:0005743!5.58e-13!86;UBERON:0003103!1.32e-12!69;UBERON:0006555!1.81e-12!17;UBERON:0005103!1.81e-12!17;UBERON:0000083!1.81e-12!17;UBERON:0009201!1.81e-12!17;UBERON:0004819!1.81e-12!17;UBERON:0006553!1.81e-12!17;UBERON:0003074!1.81e-12!17;UBERON:0003060!1.81e-12!17;UBERON:0005177!4.48e-12!107;UBERON:0009773!4.86e-12!12;UBERON:0001231!4.86e-12!12;UBERON:0004810!4.86e-12!12;UBERON:0003886!7.24e-12!63;UBERON:0001017!8.15e-12!82;UBERON:0000073!9.97e-12!94;UBERON:0001016!9.97e-12!94;UBERON:0004876!1.18e-11!20;UBERON:0004211!1.66e-11!16;UBERON:0001285!1.66e-11!16;UBERON:0007684!1.66e-11!16;UBERON:0003220!1.66e-11!16;UBERON:0004208!1.66e-11!16;UBERON:0003887!7.49e-11!21;UBERON:0002553!1.36e-10!70;UBERON:0004733!2.25e-10!12;UBERON:0002028!2.25e-10!12;UBERON:0007277!2.25e-10!12;UBERON:0000058!2.27e-10!26;UBERON:0004732!2.54e-09!13;UBERON:0000464!3.62e-09!104;UBERON:0000955!4.76e-09!69;UBERON:0006238!4.76e-09!69;UBERON:0005172!5.60e-09!55;UBERON:0005173!5.60e-09!55;UBERON:0003064!6.39e-09!37;UBERON:0000475!1.41e-08!365;UBERON:0001049!1.49e-08!57;UBERON:0005068!1.49e-08!57;UBERON:0006241!1.49e-08!57;UBERON:0007135!1.49e-08!57;UBERON:0000033!1.53e-08!123;UBERON:0004121!2.35e-08!169;UBERON:0003075!2.43e-08!86;UBERON:0007284!2.43e-08!86;UBERON:0001225!3.15e-08!13;UBERON:0008987!3.15e-08!13;UBERON:0000924!3.30e-08!173;UBERON:0006601!3.30e-08!173;UBERON:0002346!4.91e-08!90;UBERON:0002680!1.22e-07!9;UBERON:0001895!1.22e-07!9;UBERON:0010092!1.22e-07!9;UBERON:0000153!1.47e-07!129;UBERON:0007811!1.47e-07!129;UBERON:0001851!2.02e-07!16;UBERON:0002417!2.64e-07!61;UBERON:0000916!2.64e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;2.64e-29;29!UBERON:0002113;1.49e-24;24!UBERON:0011143;1.49e-24;24!UBERON:0004211;3.41e-21;10!UBERON:0009773;3.41e-21;10!UBERON:0001231;3.41e-21;10!UBERON:0004810;3.41e-21;10!UBERON:0006554;7.39e-21;30!UBERON:0001008;7.39e-21;30!UBERON:0006555;1.31e-18;15!UBERON:0004819;1.31e-18;15!UBERON:0001285;1.31e-18;15!UBERON:0007684;1.31e-18;15!UBERON:0001225;6.10e-13;12!UBERON:0008987;6.10e-13;12!UBERON:0004733;2.30e-12;12!UBERON:0002028;2.30e-12;12!UBERON:0004732;2.92e-11;13!UBERON:0002298;4.76e-11;6!UBERON:0001851;6.04e-10;15!UBERON:0000353;6.04e-10;15!UBERON:0005172;1.58e-08;52!UBERON:0005173;1.58e-08;52!UBERON:0002680;4.02e-08;9!UBERON:0001895;4.02e-08;9!UBERON:0003103;5.72e-08;61!UBERON:0006853;4.01e-07;3!UBERON:0007685;4.01e-07;3!UBERON:0004134;4.01e-07;3!UBERON:0006947;4.13e-07;3!UBERON:0004054;4.13e-07;3!UBERON:0001264;9.01e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,7.98e-33,31;UBERON:0002113,5.14e-28,26;UBERON:0003918,5.14e-28,26;UBERON:0011143,5.14e-28,26;UBERON:0005095,5.14e-28,26;UBERON:0007687,5.14e-28,26;UBERON:0004810,3.39e-21,10;UBERON:0006555,2.79e-20,16;UBERON:0004819,2.79e-20,16;UBERON:0004211,1.25e-18,15;UBERON:0009773,1.25e-18,15;UBERON:0001231,1.25e-18,15;UBERON:0001285,1.25e-18,15;UBERON:0007684,1.25e-18,15;UBERON:0004208,1.25e-18,15;UBERON:0003076,1.02e-16,15;UBERON:0003057,1.02e-16,15;UBERON:0006554,6.47e-16,47;UBERON:0001008,1.89e-15,48;UBERON:0003103,1.33e-14,68;UBERON:0005172,3.54e-14,54;UBERON:0005173,3.54e-14,54;UBERON:0005177,5.41e-14,101;UBERON:0001225,5.77e-13,12;UBERON:0008987,5.77e-13,12;UBERON:0004733,2.06e-12,12;UBERON:0002028,2.06e-12,12;UBERON:0007277,2.06e-12,12;UBERON:0002417,4.10e-12,60;UBERON:0000916,4.10e-12,60;UBERON:0004732,2.64e-11,13;UBERON:0002298,4.10e-11,6;UBERON:0001851,5.79e-10,15;UBERON:0000353,5.79e-10,15;UBERON:0009569,3.22e-08,112;UBERON:0002680,4.64e-08,9;UBERON:0001895,4.64e-08,9;UBERON:0010092,4.64e-08,9;UBERON:0000080,7.92e-08,9;UBERON:0002120,7.92e-08,9;UBERON:0004875,7.92e-08,9;UBERON:0005721,7.92e-08,9;UBERON:0005754,7.92e-08,9;UBERON:0007297,7.92e-08,9;UBERON:0006853,3.97e-07,3;UBERON:0007685,3.97e-07,3;UBERON:0004134,3.97e-07,3;UBERON:0006947,4.40e-07,3;UBERON:0004054,4.40e-07,3;UBERON:0001264,9.02e-07,10 | |||
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| ||
|short_description=p7@LHX1 | |||
}} | }} |
Latest revision as of 17:18, 19 September 2015
Short description: | p7@LHX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LHX1_5end |
Coexpression cluster: | C3624_cerebellum_serous_papillary_Renal_signet_teratocarcinoma_osteosarcoma |
Association with transcript: | 0bp_to_ENST00000559335_5end |
EntrezGene: | LHX1 |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 3.39e-21 | 10 |
nephron tubule epithelial cell | 3.39e-21 | 10 |
epithelial cell of nephron | 1.25e-18 | 15 |
kidney cell | 1.29e-18 | 17 |
kidney epithelial cell | 1.29e-18 | 17 |
kidney cortical cell | 5.77e-13 | 12 |
renal cortical epithelial cell | 5.77e-13 | 12 |
epithelial cell | 3.90e-11 | 253 |
brush border epithelial cell | 3.97e-07 | 3 |
kidney cortex tubule cell | 3.97e-07 | 3 |
epithelial cell of proximal tubule | 3.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.33e-13 | 106 |
cell type cancer | 5.09e-11 | 143 |
adenocarcinoma | 2.52e-09 | 25 |
cancer | 1.14e-07 | 235 |
disease of cellular proliferation | 2.83e-07 | 239 |