UBERON:0002298
From FANTOM5_SSTAR
Name: | brainstem | |
---|---|---|
Namespace: | FANTOM | |
Definition: | "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted]." [ISBN10:0471888893, Wikipedia:Brainstem, ZFA:0001707] | |
Xrefs: |
| |
Synonyms: |
"brain stem" EXACT [ABA:BS] "truncus encephali" EXACT LATIN [Wikipedia:Brainstem] "truncus encephalicus" RELATED [BTO:0000146] | |
Comments: | 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN10:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). | |
Alt_id: | UBERON:FMA_79876-MA_0000169 | |
Subset: |
loose_concept uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002616(regional part of brain),UBERON:0010314(structure with developmental contribution from neural crest) |
---|---|
part_of: | UBERON:0000955(brain) |
Children
part of: | UBERON:0000988 (pons),UBERON:0001896 (medulla oblongata),UBERON:0002275 (reticular formation),UBERON:0006331 (brainstem nucleus),UBERON:0015827 (brainstem reticular formation) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10165-103B3 (locus coeruleus, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10182-103D2 (locus coeruleus - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 10362-105F2 (locus coeruleus, newborn, donor10223)
- 10375-105G6 (locus coeruleus, adult, donor10258)
- 1396-42A3 (medulla oblongata, neonate N30)
... further results Mouse (Mus musculus)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10165-103B3 (locus coeruleus, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10182-103D2 (locus coeruleus - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 10362-105F2 (locus coeruleus, newborn, donor10223)
- 10375-105G6 (locus coeruleus, adult, donor10258)
- 1396-42A3 (medulla oblongata, neonate N30)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002298 (brainstem), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.