FF:11518-119H6: Difference between revisions

Latest revision as of 18:06, 4 June 2020

Name:	Renal Mesangial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11333
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	mesangial cell, intraglomerular
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC4205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005643

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11333		CAGE		DRX008434		DRR009306

Accession ID Hg19

Library id		BAM		CTSS
CNhs11333		DRZ000731		DRZ002116

Accession ID Hg38

Library id		BAM		CTSS
CNhs11333		DRZ012081		DRZ013466

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005643

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10013.CCGTCC		sRNA-Seq		DRX037217		DRR041583

Accession ID Hg19

Library id		BAM		CTSS
SRhi10013.CCGTCC		DRZ007225

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.125
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.09
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.104
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0621
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.391
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0394
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0943
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.104
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.283
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.366
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.00171
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.372
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.104
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.258
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11333

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.771
MA0003.1	MA0003.1	0.34
MA0004.1	MA0004.1	0.745
MA0006.1	MA0006.1	0.149
MA0007.1	MA0007.1	0.155
MA0009.1	MA0009.1	0.587
MA0014.1	MA0014.1	0.85
MA0017.1	MA0017.1	0.26
MA0018.2	MA0018.2	0.144
MA0019.1	MA0019.1	0.0936
MA0024.1	MA0024.1	0.539
MA0025.1	MA0025.1	0.827
MA0027.1	MA0027.1	0.468
MA0028.1	MA0028.1	0.102
MA0029.1	MA0029.1	0.377
MA0030.1	MA0030.1	0.343
MA0031.1	MA0031.1	0.127
MA0035.2	MA0035.2	0.0757
MA0038.1	MA0038.1	2.80432e-5
MA0039.2	MA0039.2	0.0853
MA0040.1	MA0040.1	0.293
MA0041.1	MA0041.1	0.257
MA0042.1	MA0042.1	0.761
MA0043.1	MA0043.1	0.0373
MA0046.1	MA0046.1	3.31761e-16
MA0047.2	MA0047.2	0.102
MA0048.1	MA0048.1	0.86
MA0050.1	MA0050.1	7.90881e-6
MA0051.1	MA0051.1	4.09739e-4
MA0052.1	MA0052.1	0.329
MA0055.1	MA0055.1	0.0682
MA0057.1	MA0057.1	0.136
MA0058.1	MA0058.1	0.922
MA0059.1	MA0059.1	0.833
MA0060.1	MA0060.1	4.17789e-6
MA0061.1	MA0061.1	0.898
MA0062.2	MA0062.2	0.00266
MA0065.2	MA0065.2	0.145
MA0066.1	MA0066.1	0.85
MA0067.1	MA0067.1	0.0108
MA0068.1	MA0068.1	0.757
MA0069.1	MA0069.1	0.94
MA0070.1	MA0070.1	0.00327
MA0071.1	MA0071.1	0.668
MA0072.1	MA0072.1	0.97
MA0073.1	MA0073.1	0.823
MA0074.1	MA0074.1	0.261
MA0076.1	MA0076.1	0.00729
MA0077.1	MA0077.1	0.0622
MA0078.1	MA0078.1	0.881
MA0079.2	MA0079.2	0.495
MA0080.2	MA0080.2	1.95336e-6
MA0081.1	MA0081.1	0.0166
MA0083.1	MA0083.1	1.99763e-6
MA0084.1	MA0084.1	0.292
MA0087.1	MA0087.1	0.652
MA0088.1	MA0088.1	0.94
MA0090.1	MA0090.1	0.00115
MA0091.1	MA0091.1	0.671
MA0092.1	MA0092.1	0.997
MA0093.1	MA0093.1	0.811
MA0099.2	MA0099.2	0.00123
MA0100.1	MA0100.1	0.167
MA0101.1	MA0101.1	0.576
MA0102.2	MA0102.2	1.34639e-4
MA0103.1	MA0103.1	0.0274
MA0104.2	MA0104.2	0.288
MA0105.1	MA0105.1	0.572
MA0106.1	MA0106.1	0.178
MA0107.1	MA0107.1	0.952
MA0108.2	MA0108.2	5.98326e-7
MA0111.1	MA0111.1	0.133
MA0112.2	MA0112.2	0.28
MA0113.1	MA0113.1	0.201
MA0114.1	MA0114.1	0.145
MA0115.1	MA0115.1	0.474
MA0116.1	MA0116.1	0.477
MA0117.1	MA0117.1	0.124
MA0119.1	MA0119.1	0.765
MA0122.1	MA0122.1	0.949
MA0124.1	MA0124.1	0.582
MA0125.1	MA0125.1	0.234
MA0131.1	MA0131.1	0.274
MA0135.1	MA0135.1	0.125
MA0136.1	MA0136.1	9.80559e-6
MA0137.2	MA0137.2	0.527
MA0138.2	MA0138.2	0.872
MA0139.1	MA0139.1	0.76
MA0140.1	MA0140.1	0.316
MA0141.1	MA0141.1	0.834
MA0142.1	MA0142.1	0.225
MA0143.1	MA0143.1	0.415
MA0144.1	MA0144.1	0.94
MA0145.1	MA0145.1	0.115
MA0146.1	MA0146.1	0.063
MA0147.1	MA0147.1	0.432
MA0148.1	MA0148.1	0.646
MA0149.1	MA0149.1	0.626
MA0150.1	MA0150.1	0.331
MA0152.1	MA0152.1	0.27
MA0153.1	MA0153.1	1.80008e-8
MA0154.1	MA0154.1	0.611
MA0155.1	MA0155.1	0.0399
MA0156.1	MA0156.1	2.86824e-4
MA0157.1	MA0157.1	0.203
MA0159.1	MA0159.1	0.908
MA0160.1	MA0160.1	0.67
MA0162.1	MA0162.1	0.195
MA0163.1	MA0163.1	0.696
MA0164.1	MA0164.1	0.483
MA0258.1	MA0258.1	0.766
MA0259.1	MA0259.1	0.231

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11333

Novel motif	Logo	P-value
1	1	0.0985
10	10	0.0239
100	100	0.476
101	101	0.16
102	102	0.537
103	103	0.531
104	104	0.376
105	105	0.161
106	106	0.304
107	107	0.0544
108	108	0.567
109	109	0.473
11	11	0.534
110	110	0.565
111	111	0.435
112	112	0.319
113	113	0.85
114	114	0.15
115	115	0.805
116	116	0.615
117	117	0.353
118	118	0.807
119	119	0.997
12	12	0.632
120	120	0.81
121	121	0.684
122	122	0.12
123	123	5.66446e-4
124	124	0.486
125	125	0.268
126	126	0.766
127	127	0.376
128	128	0.813
129	129	0.306
13	13	0.917
130	130	0.279
131	131	0.378
132	132	0.0757
133	133	0.34
134	134	0.761
135	135	0.964
136	136	0.892
137	137	0.0381
138	138	0.175
139	139	0.557
14	14	0.625
140	140	0.69
141	141	0.0433
142	142	0.603
143	143	0.345
144	144	0.865
145	145	0.995
146	146	0.0288
147	147	0.581
148	148	0.073
149	149	0.532
15	15	0.284
150	150	0.373
151	151	0.789
152	152	0.0973
153	153	0.103
154	154	0.151
155	155	0.205
156	156	0.339
157	157	0.688
158	158	0.199
159	159	0.967
16	16	0.739
160	160	0.116
161	161	0.574
162	162	0.193
163	163	0.69
164	164	0.141
165	165	0.13
166	166	0.877
167	167	0.0595
168	168	0.778
169	169	0.141
17	17	0.592
18	18	0.859
19	19	0.43
2	2	0.239
20	20	0.613
21	21	0.766
22	22	0.199
23	23	0.688
24	24	0.935
25	25	0.402
26	26	0.401
27	27	0.297
28	28	0.401
29	29	0.397
3	3	0.534
30	30	0.0319
31	31	0.449
32	32	0.0233
33	33	0.574
34	34	0.244
35	35	0.0746
36	36	0.712
37	37	0.541
38	38	0.991
39	39	0.172
4	4	0.421
40	40	0.028
41	41	0.265
42	42	0.577
43	43	0.879
44	44	0.909
45	45	0.164
46	46	0.754
47	47	0.97
48	48	0.687
49	49	0.496
5	5	0.329
50	50	0.351
51	51	0.655
52	52	0.491
53	53	0.341
54	54	0.569
55	55	0.561
56	56	0.272
57	57	0.533
58	58	0.292
59	59	0.0692
6	6	0.219
60	60	0.933
61	61	0.434
62	62	0.238
63	63	0.632
64	64	0.616
65	65	0.146
66	66	0.119
67	67	0.488
68	68	0.233
69	69	0.168
7	7	0.561
70	70	0.853
71	71	0.509
72	72	0.335
73	73	0.1
74	74	0.261
75	75	0.36
76	76	0.0254
77	77	0.0613
78	78	0.636
79	79	0.732
8	8	0.427
80	80	0.801
81	81	0.196
82	82	0.605
83	83	0.803
84	84	0.444
85	85	0.531
86	86	0.518
87	87	0.365
88	88	0.501
89	89	0.309
9	9	0.492
90	90	0.00265
91	91	0.576
92	92	0.656
93	93	0.455
94	94	0.438
95	95	0.766
96	96	0.557
97	97	0.72
98	98	0.626
99	99	1.58116e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11333

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000154 human renal mesangial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0000650 (mesangial cell)
1000500 (kidney interstitial cell)
1000618 (juxtaglomerular complex cell)
1001318 (renal interstitial pericyte)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
1000612 (kidney corpuscule cell)
0002173 (extraglomerular mesangial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0003891 (stroma)
0005172 (abdomen element)
0003567 (abdomen connective tissue)
0003838 (abdominal segment connective tissue)
0003586 (trunk connective tissue)
0010317 (germ layer / neural crest derived structure)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0005169 (interstitial tissue)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0002321 (extraglomerular mesangium)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0005215 (kidney interstitium)
0001229 (renal corpuscle)
0002303 (juxtaglomerular apparatus)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
0002319 (mesangium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000154 (human renal mesangial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008326
+|DRA_sample_Accession=CAGE@SAMD00005643
-|accession_numbers=CAGE;DRX008434;DRR009306;DRZ000731;DRZ002116
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005643
+|accession_numbers=CAGE;DRX008434;DRR009306;DRZ000731;DRZ002116;DRZ012081;DRZ013466
+|accession_numbers_RNASeq=sRNA-Seq;DRX037217;DRR041583;DRZ007225
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0005172,UBERON:0003567,UBERON:0003838,UBERON:0003586,UBERON:0010317,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0004810,UBERON:0001285,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0002319
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0000650,CL:1000500,CL:1000618,CL:1001318,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:0002173
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.99!96.19!PAX8;;chr6:134210243..134210257,+!p1@TCF21!1.83!67.19!TCF21;;chr17:36105042..36105060,-!p1@HNF1B!1.68!46.60!HNF1B;;chr11:61520075..61520136,+!p1@C11orf9!1.58!76.41!C11orf9;;chr1:201979743..201979762,+!p1@ELF3!1.58!37.12!ELF3;;chr7:27205136..27205164,-!p1@HOXA9!1.57!36.31!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.04!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!1.57!35.76!HOXB9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.56!35.49!HOXC5;;chr11:32457075..32457095,-!p1@WT1!1.56!34.95!WT1;;chr16:86600426..86600441,+!p1@FOXC2!1.55!82.91!FOXC2;;chr7:27196217..27196246,-!p2@HOXA7!1.55!34.14!HOXA7;;chr1:201979703..201979721,+!p2@ELF3!1.48!28.99!ELF3;;chr2:176969228..176969260,+!p1@HOXD11!1.40!23.84!HOXD11;;chr12:54393880..54393962,+!p1@HOXC9!1.37!22.22!HOXC9;;chr12:54379029..54379057,+!p2@HOXC10!1.36!21.95!HOXC10;;chr12:54378923..54378966,+!p1@HOXC10!1.33!20.59!HOXC10;;chr7:27224842..27224872,-!p1@HOXA11!1.33!20.59!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.32!19.78!HOXA11;;chr5:72744594..72744609,-!p1@FOXD1!1.31!86.16!FOXD1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.27!17.61!LHX1;;chr7:27192185..27192209,-!p1@HOXA3!1.26!17.07!HOXA3;;chr2:45236540..45236577,-!p1@SIX2!1.25!16.80!SIX2;;chr6:34204921..34204939,+!p3@HMGA1!1.24!485.27!HMGA1;;chr7:27213893..27213954,-!p1@HOXA10!1.22!15.71!HOXA10;;chr7:27153454..27153469,-!p2@HOXA3!1.21!15.17!HOXA3;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.23!NR2F1;;chr17:46688334..46688385,-!p1@HOXB7!1.11!17.34!HOXB7;;chr16:86544113..86544145,+!p1@FOXF1!1.10!14.36!FOXF1;;chr7:27196196..27196210,-!p5@HOXA7!1.10!11.65!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.10!11.65!HOXA9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.08!11.65!GLIS1;;chr2:176972000..176972025,+!p4@HOXD11!1.06!10.57!HOXD11;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.91!HMGA2;;chr15:96874145..96874166,+!p7@NR2F2!1.03!18.70!NR2F2;;chr10:102505327..102505344,+!p1@PAX2!1.02!9.48!PAX2;;chr2:176969097..176969109,+!p3@HOXD11!1.02!9.48!HOXD11;;chr2:176969179..176969226,+!p2@HOXD11!1.02!9.48!HOXD11;;chr2:121493425..121493474,+!p1@GLI2!1.00!20.05!GLI2;;chr10:102505493..102505546,+!p2@PAX2!1.00!8.94!PAX2;;chr15:96874012..96874042,+!p2@NR2F2!0.99!79.93!NR2F2;;chr12:66218212..66218244,+!p5@HMGA2!0.98!12.46!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.82!FOXD1;;chr11:32457413..32457431,-!p2@WT1!0.96!8.13!WT1;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.13!HOXB8;;chr2:45236579..45236596,-!p2@SIX2!0.96!8.13!SIX2;;chr15:96869114..96869160,+!p11@NR2F2!0.94!10.57!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.92!11.65!ZFP64;;chr19:45260775..45260838,+!p5@BCL3!0.92!9.75!BCL3;;chr6:34204672..34204692,+!p1@HMGA1!0.91!835.06!HMGA1;;chr17:46622070..46622109,-!p1@HOXB2!0.91!16.53!HOXB2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.91!7.04!HOXC5;;chr7:27183263..27183284,-!p2@HOXA5!0.91!7.04!HOXA5;;chr15:96874244..96874259,+!p5@NR2F2!0.90!17.34!NR2F2;;chr19:49864746..49864780,-!p2@TEAD2!0.90!9.75!TEAD2;;chr2:176973498..176973524,+!p1@HOXD10!0.89!6.77!HOXD10;;chr2:5832508..5832524,+!p1@SOX11!0.89!6.77!SOX11;;chr7:27170359..27170381,-!p1@HOXA4!0.89!6.77!HOXA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.49!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.28!SIX1;;chr1:151032922..151032951,+!p2@MLLT11!0.88!11.11!MLLT11;;chr5:72743793..72743855,-!p4@FOXD1!0.88!7.86!FOXD1;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.50!FOXC2;;chr15:96869255..96869291,+!p6@NR2F2!0.87!11.92!NR2F2;;chr2:176994408..176994492,+!p1@HOXD8!0.86!6.23!HOXD8;;chr14:21994337..21994442,-!p1@SALL2!0.85!17.61!SALL2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.40!DNMT3A;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.26!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!0.84!5.96!HOXC8;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.96!SALL1;;chr15:96873861..96873872,+!p9@NR2F2!0.83!12.46!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.13!HOXB7;;chr10:102495147..102495159,+!p4@PAX2!0.83!5.69!PAX2;;chr17:46622114..46622138,-!p4@HOXB2!0.82!8.94!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!0.82!6.50!HOXB2;;chr7:27219833..27219845,-!p7@HOXA10!0.81!5.42!HOXA10;;chr1:151032860..151032918,+!p1@MLLT11!0.80!68.01!MLLT11;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!57.71!GLIS2;;chr1:209979467..209979494,-!p1@IRF6!0.80!5.96!IRF6;;chr7:44143925..44143970,+!p1@AEBP1!0.79!126.26!AEBP1;;chr12:3069037..3069119,+!p2@TEAD4!0.79!18.97!TEAD4;;chr10:102505954..102505973,+!p3@PAX2!0.79!5.15!PAX2;;chr7:27153428..27153440,-!p3@HOXA3!0.79!5.15!HOXA3;;chr5:72744562..72744573,-!p3@FOXD1!0.77!6.23!FOXD1;;chr7:27183291..27183324,-!p1@HOXA5!0.77!4.88!HOXA5;;chr2:176971685..176971700,+!p6@HOXD11!0.77!4.88!HOXD11;;chr3:111314186..111314204,-!p1@ZBED2!0.77!4.88!ZBED2;;chr15:96869165..96869183,+!p20@NR2F2!0.77!4.88!NR2F2;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.26!GATA6;;chr15:37390850..37390909,-!p3@MEIS2!0.75!9.75!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.42!BNC1;;chr2:960123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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000669;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1001318;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003891;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11518-119H6
 |is_a=EFO:0002091;;FF:0000154
 |is_obsolete=
 |library_id=CNhs11333
-|library_id_phase_based=1:CNhs11333
+|library_id_phase_based=2:CNhs11333
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11518
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.CCGTCC.11518
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11518
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.CCGTCC.11518
 |name=Renal Mesangial Cells, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11333,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10013,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=119H6
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10013.CCGTCC
 |sample_age=
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11518-119H6;search_select_hide=table117:FF:11518-119H6
 }}

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FF:11518-119H6: Difference between revisions

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Latest revision as of 18:06, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0