FFCP PHASE1:Hg19::chr20:6034576..6034592,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=164312 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16208 | |||
|TSSclassifier=strong | |||
|UniProt=Q8WUT4,Q6ZMD1 | |||
|association_with_transcript=101bp_to_NM_152611,uc002wmo.2,uc002wmp.2_5end | |||
|cluster_id=chr20:6034576..6034592,- | |||
|coexpression_cluster_id=C548 | |||
|description=CAGE_peak_3_at_LRRN4_5end | |||
|id=chr20:6034576..6034592,- | |||
|ontology_enrichment_celltype=CL:1000497!4.87e-23!18;CL:0002518!4.87e-23!18;CL:1000449!5.80e-19!16;CL:1000507!1.32e-17!12;CL:1000494!1.32e-17!12;CL:0000077!5.14e-15!19;CL:0002681!1.68e-12!13;CL:0002584!1.68e-12!13;CL:0000066!1.44e-07!254;CL:0000632!9.22e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.01e-46;17!CL:0002518;2.01e-46;17!CL:1000507;6.44e-46;10!CL:1000494;6.44e-46;10!CL:1000449;1.15e-44;15!CL:0002681;1.21e-29;12!CL:0002584;1.21e-29;12!CL:0000077;7.97e-19;19!CL:1000746;1.53e-13;7!CL:1000612;1.53e-13;7!CL:0000650;3.59e-13;2!CL:1000500;3.59e-13;2!CL:1000618;3.59e-13;2!CL:1001318;3.59e-13;2!CL:0002173;3.59e-13;2!CL:0000632;6.53e-09;3!CL:0000239;9.82e-09;3!CL:1000615;9.82e-09;3!CL:0002306;9.82e-09;3!CL:0000213;3.99e-07;58!CL:0000215;3.99e-07;58!CL:0000669;5.38e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.27e-46,17;CL:0002518,2.27e-46,17;CL:1000507,5.96e-46,10;CL:1000494,5.96e-46,10;CL:1000449,1.23e-44,15;CL:0002681,1.26e-29,12;CL:0002584,1.26e-29,12;CL:0000077,7.70e-19,19;CL:1000746,1.77e-13,7;CL:1000612,1.77e-13,7;CL:0000650,3.93e-13,2;CL:1000500,3.93e-13,2;CL:1000618,3.93e-13,2;CL:1001318,3.93e-13,2;CL:0002173,3.93e-13,2;CL:0000213,4.44e-10,58;CL:0000215,4.44e-10,58;CL:0000632,6.40e-09,3;CL:0000239,9.09e-09,3;CL:1000615,9.09e-09,3;CL:0002306,9.09e-09,3;CL:0000669,5.62e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:120!1.77e-15!27;DOID:193!3.64e-14!29;DOID:2394!5.96e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.45e-10;14!DOID:120;4.37e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.20e-10,14;DOID:120,4.22e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0005172!3.67e-23!55;UBERON:0005173!3.67e-23!55;UBERON:0002113!1.42e-21!27;UBERON:0003918!1.42e-21!27;UBERON:0005095!1.42e-21!27;UBERON:0007687!1.42e-21!27;UBERON:0006555!9.25e-21!17;UBERON:0005103!9.25e-21!17;UBERON:0000083!9.25e-21!17;UBERON:0009201!9.25e-21!17;UBERON:0004819!9.25e-21!17;UBERON:0006553!9.25e-21!17;UBERON:0003074!9.25e-21!17;UBERON:0003060!9.25e-21!17;UBERON:0002417!3.52e-20!61;UBERON:0000916!3.52e-20!61;UBERON:0000489!1.03e-19!32;UBERON:0000080!1.97e-19!18;UBERON:0002120!1.97e-19!18;UBERON:0004875!1.97e-19!18;UBERON:0005721!1.97e-19!18;UBERON:0005754!1.97e-19!18;UBERON:0007297!1.97e-19!18;UBERON:0004211!5.80e-19!16;UBERON:0001285!5.80e-19!16;UBERON:0007684!5.80e-19!16;UBERON:0003220!5.80e-19!16;UBERON:0004208!5.80e-19!16;UBERON:0009773!1.32e-17!12;UBERON:0001231!1.32e-17!12;UBERON:0004810!1.32e-17!12;UBERON:0004876!3.53e-17!20;UBERON:0000058!8.88e-17!26;UBERON:0003887!3.26e-16!21;UBERON:0006554!9.80e-15!44;UBERON:0001008!2.66e-14!45;UBERON:0005177!9.31e-14!107;UBERON:0000466!2.53e-13!126;UBERON:0003064!1.32e-12!37;UBERON:0001851!1.47e-12!16;UBERON:0001225!1.68e-12!13;UBERON:0008987!1.68e-12!13;UBERON:0009569!1.24e-11!113;UBERON:0000353!1.30e-11!17;UBERON:0003886!1.97e-11!63;UBERON:0003914!2.33e-11!118;UBERON:0003103!4.05e-11!69;UBERON:0002553!8.92e-10!70;UBERON:0009856!4.46e-09!26;UBERON:0009854!9.95e-09!23;UBERON:0000464!3.77e-08!104;UBERON:0005256!4.88e-08!143;UBERON:0007499!7.42e-08!25;UBERON:0009497!7.55e-08!25;UBERON:0000015!7.55e-08!25;UBERON:0002423!7.55e-08!25;UBERON:0006235!7.55e-08!25;UBERON:0004161!7.55e-08!25;UBERON:0008835!1.78e-07!22;UBERON:0003894!1.78e-07!22;UBERON:0003104!2.72e-07!238;UBERON:0009142!2.72e-07!238;UBERON:0003134!4.02e-07!37;UBERON:0000474!4.02e-07!37;UBERON:0002100!4.21e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;6.44e-46;10!UBERON:0009773;6.44e-46;10!UBERON:0001231;6.44e-46;10!UBERON:0004810;6.44e-46;10!UBERON:0006555;1.15e-44;15!UBERON:0004819;1.15e-44;15!UBERON:0001285;1.15e-44;15!UBERON:0007684;1.15e-44;15!UBERON:0002113;1.01e-37;24!UBERON:0011143;1.01e-37;24!UBERON:0000489;9.09e-31;29!UBERON:0001851;8.12e-30;15!UBERON:0006554;1.18e-29;30!UBERON:0001008;1.18e-29;30!UBERON:0001225;1.21e-29;12!UBERON:0008987;1.21e-29;12!UBERON:0000353;1.43e-29;15!UBERON:0005172;1.44e-22;52!UBERON:0005173;1.44e-22;52!UBERON:0002417;2.31e-16;58!UBERON:0000916;2.31e-16;58!UBERON:0000074;1.53e-13;7!UBERON:0001229;1.53e-13;7!UBERON:0003567;3.59e-13;2!UBERON:0003838;3.59e-13;2!UBERON:0003586;3.59e-13;2!UBERON:0005169;3.59e-13;2!UBERON:0002321;3.59e-13;2!UBERON:0005215;3.59e-13;2!UBERON:0002303;3.59e-13;2!UBERON:0002319;3.59e-13;2!UBERON:0005177;8.03e-11;99!UBERON:0003103;2.10e-09;61!UBERON:0006853;9.82e-09;3!UBERON:0007685;9.82e-09;3!UBERON:0004134;9.82e-09;3!UBERON:0003891;5.38e-07;4!UBERON:0002171;6.49e-07;1!UBERON:0006518;6.49e-07;1!UBERON:0008949;6.49e-07;1!UBERON:0000101;6.49e-07;1!UBERON:0002167;6.49e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,5.96e-46,10;UBERON:0004211,1.23e-44,15;UBERON:0009773,1.23e-44,15;UBERON:0001231,1.23e-44,15;UBERON:0001285,1.23e-44,15;UBERON:0007684,1.23e-44,15;UBERON:0004208,1.23e-44,15;UBERON:0006555,1.02e-41,16;UBERON:0004819,1.02e-41,16;UBERON:0002113,1.41e-34,26;UBERON:0003918,1.41e-34,26;UBERON:0011143,1.41e-34,26;UBERON:0005095,1.41e-34,26;UBERON:0007687,1.41e-34,26;UBERON:0005172,1.54e-30,54;UBERON:0005173,1.54e-30,54;UBERON:0001851,7.99e-30,15;UBERON:0001225,1.26e-29,12;UBERON:0008987,1.26e-29,12;UBERON:0000353,1.38e-29,15;UBERON:0000489,1.41e-28,31;UBERON:0002417,4.23e-27,60;UBERON:0000916,4.23e-27,60;UBERON:0005177,1.72e-20,101;UBERON:0009569,4.86e-18,112;UBERON:0006554,5.87e-18,47;UBERON:0001008,1.57e-17,48;UBERON:0003103,1.46e-13,68;UBERON:0010532,1.77e-13,7;UBERON:0000074,1.77e-13,7;UBERON:0001229,1.77e-13,7;UBERON:0001230,1.77e-13,7;UBERON:0003220,1.77e-13,7;UBERON:0005749,1.77e-13,7;UBERON:0004199,1.77e-13,7;UBERON:0004209,1.77e-13,7;UBERON:0004198,1.77e-13,7;UBERON:0003567,3.93e-13,2;UBERON:0003838,3.93e-13,2;UBERON:0003586,3.93e-13,2;UBERON:0005169,3.93e-13,2;UBERON:0002321,3.93e-13,2;UBERON:0005215,3.93e-13,2;UBERON:0002303,3.93e-13,2;UBERON:0002319,3.93e-13,2;UBERON:0005103,8.23e-12,8;UBERON:0000083,8.23e-12,8;UBERON:0009201,8.23e-12,8;UBERON:0006553,8.23e-12,8;UBERON:0003074,8.23e-12,8;UBERON:0003060,8.23e-12,8;UBERON:0000080,1.64e-10,9;UBERON:0002120,1.64e-10,9;UBERON:0004875,1.64e-10,9;UBERON:0005721,1.64e-10,9;UBERON:0005754,1.64e-10,9;UBERON:0007297,1.64e-10,9;UBERON:0003914,3.31e-09,117;UBERON:0006853,9.09e-09,3;UBERON:0007685,9.09e-09,3;UBERON:0004134,9.09e-09,3;UBERON:0004876,1.28e-08,11;UBERON:0002100,3.11e-08,199;UBERON:0003887,6.60e-08,12;UBERON:0003104,8.35e-08,160;UBERON:0009142,8.35e-08,160;UBERON:0000058,2.13e-07,19;UBERON:0003891,5.62e-07,4;UBERON:0002171,7.73e-07,1;UBERON:0006518,7.73e-07,1;UBERON:0008949,7.73e-07,1;UBERON:0000101,7.73e-07,1;UBERON:0002167,7.73e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709336764396714,1.68203280042692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567160915800105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580969714347592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,12.347220339942,5.88034845542168,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57191197463259,0,0,0,1.06617584622764,0,16.8806051153368,8.71533458600294,27.6925185574298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,4.51199612907412,2.77255213575893,11.7652465376528,4.38417673959782,6.9664075069298,2.27466768141793,0,2.15915916102139,0,14.9020540649119,9.03041592938736,4.58777291481069,0,8.95499018888713,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3209787098083,0.326465616318295,0.565412285735763,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0.34823682632161,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,1.15400093896996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41719720216623,0,2.07119527673598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796483835818512,0,1.39736661188633,0,0,0.521745061811734,9.7667445848192,5.71207818253193,2.84809513243263,0,6.12240175142184,0,0.398095888698616,0,0,0,0,0,9.86431320324658,0.521988583930423,1.58694147858591,0,0,0,9.57284486199014,13.5956110738798,0.176689145945881,4.43702288023104,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,1.07963795609311,0.47775168788705,0,0,11.15917683534,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506794004045748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@LRRN4 | |||
}} |
Latest revision as of 09:43, 17 September 2015
Short description: | p3@LRRN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRRN4_5end |
Coexpression cluster: | C548_Mesothelial_mesenchymal_rhabdomyosarcoma_Renal_mesothelioma_Hepatic_clear |
Association with transcript: | 101bp_to_NM_152611, uc002wmo.2, uc002wmp.2_5end |
EntrezGene: | LRRN4 |
HGNC: | 16208 |
UniProt: | Q8WUT4Q6ZMD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.27e-46 | 17 |
kidney epithelial cell | 2.27e-46 | 17 |
kidney tubule cell | 5.96e-46 | 10 |
nephron tubule epithelial cell | 5.96e-46 | 10 |
epithelial cell of nephron | 1.23e-44 | 15 |
kidney cortical cell | 1.26e-29 | 12 |
renal cortical epithelial cell | 1.26e-29 | 12 |
mesothelial cell | 7.70e-19 | 19 |
glomerular cell | 1.77e-13 | 7 |
kidney corpuscule cell | 1.77e-13 | 7 |
mesangial cell | 3.93e-13 | 2 |
kidney interstitial cell | 3.93e-13 | 2 |
juxtaglomerular complex cell | 3.93e-13 | 2 |
renal interstitial pericyte | 3.93e-13 | 2 |
extraglomerular mesangial cell | 3.93e-13 | 2 |
lining cell | 4.44e-10 | 58 |
barrier cell | 4.44e-10 | 58 |
hepatic stellate cell | 6.40e-09 | 3 |
brush border epithelial cell | 9.09e-09 | 3 |
kidney cortex tubule cell | 9.09e-09 | 3 |
epithelial cell of proximal tubule | 9.09e-09 | 3 |
pericyte cell | 5.62e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.20e-10 | 14 |
female reproductive organ cancer | 4.22e-07 | 27 |