FFCP PHASE1:Hg19::chr4:40516564..40516605,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54502 | |EntrezGene=54502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30358 | |HGNC=30358 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003gvg.1_5end | |association_with_transcript=0bp_to_uc003gvg.1_5end | ||
|cluster_id=chr4:40516564..40516605,- | |||
|description=CAGE_peak_6_at_RBM47_5end | |description=CAGE_peak_6_at_RBM47_5end | ||
|id=chr4:40516564..40516605,- | |id=chr4:40516564..40516605,- | ||
|ontology_enrichment_celltype=CL:1000497!6.58e-16!18;CL:0002518!6.58e-16!18;CL:1000449!3.20e-13!16;CL:1000507!3.43e-13!12;CL:1000494!3.43e-13!12;CL:0002681!2.12e-09!13;CL:0002584!2.12e-09!13;CL:0000066!1.70e-07!254 | |ontology_enrichment_celltype=CL:1000497!6.58e-16!18;CL:0002518!6.58e-16!18;CL:1000449!3.20e-13!16;CL:1000507!3.43e-13!12;CL:1000494!3.43e-13!12;CL:0002681!2.12e-09!13;CL:0002584!2.12e-09!13;CL:0000066!1.70e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.93e-23;10!CL:1000494;1.93e-23;10!CL:1000497;6.04e-22;17!CL:0002518;6.04e-22;17!CL:1000449;5.69e-18;15!CL:0002681;2.51e-12;12!CL:0002584;2.51e-12;12!CL:0000239;6.22e-09;3!CL:1000615;6.22e-09;3!CL:0002306;6.22e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.36e-23,10;CL:1000494,2.36e-23,10;CL:1000497,7.03e-22,17;CL:0002518,7.03e-22,17;CL:1000449,6.69e-18,15;CL:0002681,2.95e-12,12;CL:0002584,2.95e-12,12;CL:0000239,6.56e-09,3;CL:1000615,6.56e-09,3;CL:0002306,6.56e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0006595;4.40e-07;86 | |||
|ontology_enrichment_disease=DOID:305!8.28e-10!106;DOID:299!1.69e-09!25;DOID:0050687!9.83e-07!143 | |ontology_enrichment_disease=DOID:305!8.28e-10!106;DOID:299!1.69e-09!25;DOID:0050687!9.83e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:299;7.33e-11;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,7.89e-11,25 | |||
|ontology_enrichment_uberon=UBERON:0005172!6.81e-22!55;UBERON:0005173!6.81e-22!55;UBERON:0000466!1.45e-19!126;UBERON:0000058!6.59e-19!26;UBERON:0005177!7.58e-19!107;UBERON:0002417!8.18e-19!61;UBERON:0000916!8.18e-19!61;UBERON:0001007!6.21e-18!155;UBERON:0001555!6.21e-18!155;UBERON:0007026!6.21e-18!155;UBERON:0004921!1.02e-17!129;UBERON:0004185!1.02e-17!129;UBERON:0002113!6.82e-17!27;UBERON:0003918!6.82e-17!27;UBERON:0005095!6.82e-17!27;UBERON:0007687!6.82e-17!27;UBERON:0004119!8.16e-17!169;UBERON:0000925!8.16e-17!169;UBERON:0006595!8.16e-17!169;UBERON:0004876!5.10e-16!20;UBERON:0000080!7.56e-16!18;UBERON:0002120!7.56e-16!18;UBERON:0004875!7.56e-16!18;UBERON:0005721!7.56e-16!18;UBERON:0005754!7.56e-16!18;UBERON:0007297!7.56e-16!18;UBERON:0000489!5.12e-15!32;UBERON:0003887!7.59e-15!21;UBERON:0006555!1.01e-14!17;UBERON:0005103!1.01e-14!17;UBERON:0000083!1.01e-14!17;UBERON:0009201!1.01e-14!17;UBERON:0004819!1.01e-14!17;UBERON:0006553!1.01e-14!17;UBERON:0003074!1.01e-14!17;UBERON:0003060!1.01e-14!17;UBERON:0006554!1.05e-14!44;UBERON:0001008!3.11e-14!45;UBERON:0009569!4.41e-14!113;UBERON:0004211!3.20e-13!16;UBERON:0001285!3.20e-13!16;UBERON:0007684!3.20e-13!16;UBERON:0003220!3.20e-13!16;UBERON:0004208!3.20e-13!16;UBERON:0009773!3.43e-13!12;UBERON:0001231!3.43e-13!12;UBERON:0004810!3.43e-13!12;UBERON:0000077!3.49e-13!130;UBERON:0003064!4.17e-13!37;UBERON:0000464!1.01e-12!104;UBERON:0005409!1.63e-12!35;UBERON:0003104!9.70e-12!238;UBERON:0009142!9.70e-12!238;UBERON:0009856!3.13e-11!26;UBERON:0002553!3.48e-11!70;UBERON:0005911!1.08e-10!82;UBERON:0009497!1.97e-10!25;UBERON:0000015!1.97e-10!25;UBERON:0002423!1.97e-10!25;UBERON:0006235!1.97e-10!25;UBERON:0004161!1.97e-10!25;UBERON:0000160!3.27e-10!27;UBERON:0007499!4.71e-10!25;UBERON:0001041!7.20e-10!98;UBERON:0009854!7.75e-10!23;UBERON:0001225!2.12e-09!13;UBERON:0008987!2.12e-09!13;UBERON:0000481!3.08e-09!347;UBERON:0003886!4.61e-09!63;UBERON:0003929!6.23e-09!54;UBERON:0001851!6.90e-09!16;UBERON:0008835!1.12e-08!22;UBERON:0003894!1.12e-08!22;UBERON:0000059!8.58e-08!11;UBERON:0000062!1.99e-07!511;UBERON:0004175!2.73e-07!25;UBERON:0003103!3.39e-07!69;UBERON:0002100!6.53e-07!216;UBERON:0000353!9.67e-07!17 | |ontology_enrichment_uberon=UBERON:0005172!6.81e-22!55;UBERON:0005173!6.81e-22!55;UBERON:0000466!1.45e-19!126;UBERON:0000058!6.59e-19!26;UBERON:0005177!7.58e-19!107;UBERON:0002417!8.18e-19!61;UBERON:0000916!8.18e-19!61;UBERON:0001007!6.21e-18!155;UBERON:0001555!6.21e-18!155;UBERON:0007026!6.21e-18!155;UBERON:0004921!1.02e-17!129;UBERON:0004185!1.02e-17!129;UBERON:0002113!6.82e-17!27;UBERON:0003918!6.82e-17!27;UBERON:0005095!6.82e-17!27;UBERON:0007687!6.82e-17!27;UBERON:0004119!8.16e-17!169;UBERON:0000925!8.16e-17!169;UBERON:0006595!8.16e-17!169;UBERON:0004876!5.10e-16!20;UBERON:0000080!7.56e-16!18;UBERON:0002120!7.56e-16!18;UBERON:0004875!7.56e-16!18;UBERON:0005721!7.56e-16!18;UBERON:0005754!7.56e-16!18;UBERON:0007297!7.56e-16!18;UBERON:0000489!5.12e-15!32;UBERON:0003887!7.59e-15!21;UBERON:0006555!1.01e-14!17;UBERON:0005103!1.01e-14!17;UBERON:0000083!1.01e-14!17;UBERON:0009201!1.01e-14!17;UBERON:0004819!1.01e-14!17;UBERON:0006553!1.01e-14!17;UBERON:0003074!1.01e-14!17;UBERON:0003060!1.01e-14!17;UBERON:0006554!1.05e-14!44;UBERON:0001008!3.11e-14!45;UBERON:0009569!4.41e-14!113;UBERON:0004211!3.20e-13!16;UBERON:0001285!3.20e-13!16;UBERON:0007684!3.20e-13!16;UBERON:0003220!3.20e-13!16;UBERON:0004208!3.20e-13!16;UBERON:0009773!3.43e-13!12;UBERON:0001231!3.43e-13!12;UBERON:0004810!3.43e-13!12;UBERON:0000077!3.49e-13!130;UBERON:0003064!4.17e-13!37;UBERON:0000464!1.01e-12!104;UBERON:0005409!1.63e-12!35;UBERON:0003104!9.70e-12!238;UBERON:0009142!9.70e-12!238;UBERON:0009856!3.13e-11!26;UBERON:0002553!3.48e-11!70;UBERON:0005911!1.08e-10!82;UBERON:0009497!1.97e-10!25;UBERON:0000015!1.97e-10!25;UBERON:0002423!1.97e-10!25;UBERON:0006235!1.97e-10!25;UBERON:0004161!1.97e-10!25;UBERON:0000160!3.27e-10!27;UBERON:0007499!4.71e-10!25;UBERON:0001041!7.20e-10!98;UBERON:0009854!7.75e-10!23;UBERON:0001225!2.12e-09!13;UBERON:0008987!2.12e-09!13;UBERON:0000481!3.08e-09!347;UBERON:0003886!4.61e-09!63;UBERON:0003929!6.23e-09!54;UBERON:0001851!6.90e-09!16;UBERON:0008835!1.12e-08!22;UBERON:0003894!1.12e-08!22;UBERON:0000059!8.58e-08!11;UBERON:0000062!1.99e-07!511;UBERON:0004175!2.73e-07!25;UBERON:0003103!3.39e-07!69;UBERON:0002100!6.53e-07!216;UBERON:0000353!9.67e-07!17 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.93e-23;10!UBERON:0009773;1.93e-23;10!UBERON:0001231;1.93e-23;10!UBERON:0004810;1.93e-23;10!UBERON:0005409;8.64e-21;22!UBERON:0002113;1.74e-20;24!UBERON:0011143;1.74e-20;24!UBERON:0004921;1.17e-18;33!UBERON:0006555;5.69e-18;15!UBERON:0004819;5.69e-18;15!UBERON:0001285;5.69e-18;15!UBERON:0007684;5.69e-18;15!UBERON:0000160;1.14e-16;17!UBERON:0000489;2.66e-16;29!UBERON:0006554;1.24e-15;30!UBERON:0001008;1.24e-15;30!UBERON:0005172;9.61e-14;52!UBERON:0005173;9.61e-14;52!UBERON:0001225;2.51e-12;12!UBERON:0008987;2.51e-12;12!UBERON:0000059;2.40e-11;11!UBERON:0002417;1.34e-09;58!UBERON:0000916;1.34e-09;58!UBERON:0001851;1.38e-09;15!UBERON:0000353;1.38e-09;15!UBERON:0006853;6.22e-09;3!UBERON:0007685;6.22e-09;3!UBERON:0004134;6.22e-09;3!UBERON:0004907;2.26e-08;5!UBERON:0001007;4.60e-08;81!UBERON:0001155;7.38e-08;9!UBERON:0005177;8.84e-08;99!UBERON:0000002;3.01e-07;6!UBERON:0001560;3.01e-07;6!UBERON:0002423;5.24e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.36e-23,10;UBERON:0002113,1.87e-21,26;UBERON:0003918,1.87e-21,26;UBERON:0011143,1.87e-21,26;UBERON:0005095,1.87e-21,26;UBERON:0007687,1.87e-21,26;UBERON:0005172,2.55e-21,54;UBERON:0005173,2.55e-21,54;UBERON:0006555,4.01e-20,16;UBERON:0004819,4.01e-20,16;UBERON:0005177,5.38e-19,101;UBERON:0002417,1.54e-18,60;UBERON:0000916,1.54e-18,60;UBERON:0005409,5.51e-18,25;UBERON:0004211,6.69e-18,15;UBERON:0009773,6.69e-18,15;UBERON:0001231,6.69e-18,15;UBERON:0001285,6.69e-18,15;UBERON:0007684,6.69e-18,15;UBERON:0004208,6.69e-18,15;UBERON:0000489,2.49e-17,31;UBERON:0000160,1.07e-16,17;UBERON:0004921,1.26e-16,118;UBERON:0001007,2.76e-16,145;UBERON:0001555,2.76e-16,145;UBERON:0007026,2.76e-16,145;UBERON:0004119,7.47e-14,160;UBERON:0000925,7.47e-14,160;UBERON:0006595,7.47e-14,160;UBERON:0009569,8.35e-14,112;UBERON:0006554,3.36e-13,47;UBERON:0001008,7.85e-13,48;UBERON:0001225,2.95e-12,12;UBERON:0008987,2.95e-12,12;UBERON:0000059,2.29e-11,11;UBERON:0001851,1.57e-09,15;UBERON:0000353,1.57e-09,15;UBERON:0006853,6.56e-09,3;UBERON:0007685,6.56e-09,3;UBERON:0004134,6.56e-09,3;UBERON:0003103,9.67e-09,68;UBERON:0004907,2.13e-08,5;UBERON:0001155,7.39e-08,9;UBERON:0005911,7.41e-08,82;UBERON:0001041,1.03e-07,87;UBERON:0003929,1.12e-07,54;UBERON:0002100,1.41e-07,199;UBERON:0003104,1.57e-07,160;UBERON:0009142,1.57e-07,160;UBERON:0000002,3.09e-07,6;UBERON:0001560,3.09e-07,6;UBERON:0009497,4.99e-07,25;UBERON:0000015,4.99e-07,25;UBERON:0002423,4.99e-07,25;UBERON:0006235,4.99e-07,25;UBERON:0004161,4.99e-07,25 | |||
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| ||
|short_description=p6@RBM47 | |short_description=p6@RBM47 | ||
}} | }} |
Latest revision as of 18:40, 17 September 2015
Short description: | p6@RBM47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RBM47_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc003gvg.1_5end |
EntrezGene: | RBM47 |
HGNC: | 30358 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.36e-23 | 10 |
nephron tubule epithelial cell | 2.36e-23 | 10 |
kidney cell | 7.03e-22 | 17 |
kidney epithelial cell | 7.03e-22 | 17 |
epithelial cell of nephron | 6.69e-18 | 15 |
kidney cortical cell | 2.95e-12 | 12 |
renal cortical epithelial cell | 2.95e-12 | 12 |
brush border epithelial cell | 6.56e-09 | 3 |
kidney cortex tubule cell | 6.56e-09 | 3 |
epithelial cell of proximal tubule | 6.56e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 7.89e-11 | 25 |