UBERON:0001041

Name:	foregut
Namespace:	FANTOM
Definition:	"Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
Xrefs:	Expandlinks: AAO:0011042 BILA:0000085 BTO:0000507 EHDAA2:0000557 EHDAA:520 EMAPA:16548 FBbt:00005379 FMA:45616 [ Gray27.png] [ 200px-Gray27.png] MA:0001526 ncithesaurus:Foregut SCTID:361409009 TGMA:0001014 VHOG:0000285 XAO:0000232
Synonyms:	"praeenteron; proenteron" RELATED LATIN [Wikipedia:Foregut]
Comments:	Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
Alt_id:	UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
Subset:	developmental_classification uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0004921(subdivision of digestive tract)

Children

develops from:	UBERON:0000115 (lung epithelium),UBERON:0001043 (esophagus),UBERON:0003894 (liver primordium),UBERON:0003922 (pancreatic epithelial bud),UBERON:0004908 (upper digestive tract),UBERON:0005597 (lung primordium)
part of:	UBERON:0000945 (stomach),UBERON:0003258 (endoderm of foregut),UBERON:0003294 (gland of foregut),UBERON:0009143 (esophageal region),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015833 (foregut epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10015-101C6 (esophagus, adult, pool1)
• 10062-101H8 (stomach, fetal, donor1)
• 10093-102C3 (salivary gland, adult, pool1)
• 10199-103F1 (parotid gland, adult)
• 10202-103F4 (submaxillary gland, adult)
• 1035-18D5 (stomach, embryo E17)
• 10436-106E4 (signet ring carcinoma cell line:Kato III)
• 10459-106G9
• 10473-106I5
• 10516-107E3

... further results Mouse (Mus musculus)

• 10015-101C6 (esophagus, adult, pool1)
• 10062-101H8 (stomach, fetal, donor1)
• 10093-102C3 (salivary gland, adult, pool1)
• 10199-103F1 (parotid gland, adult)
• 10202-103F4 (submaxillary gland, adult)
• 1035-18D5 (stomach, embryo E17)
• 10436-106E4 (signet ring carcinoma cell line:Kato III)
• 10459-106G9
• 10473-106I5
• 10516-107E3

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001041 (foregut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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Search:

P-value	FFCP	Short description

P-value	FFCP	Short description
1.14e-28	FFCP PHASE1:Hg19::chr14:38064429..38064486,-	p1@FOXA1
1.14e-28	FFCP PHASE2:Hg19::chr14:38064429..38064486,-	p1@FOXA1
9.69e-28	FFCP PHASE1:Hg19::chr17:19651668..19651682,-	p2@ALDH3A1
9.69e-28	FFCP PHASE2:Hg19::chr17:19651668..19651682,-	p2@ALDH3A1
6.01e-27	FFCP PHASE1:Hg19::chr2:234590530..234590553,+	p1@UGT1A7
6.01e-27	FFCP PHASE2:Hg19::chr2:234590530..234590553,+	p1@UGT1A7
9.26e-27	FFCP PHASE1:Hg19::chr8:128231080..128231222,-	p1@ENST00000500112, p1@uc003ysa.1
9.26e-27	FFCP PHASE2:Hg19::chr8:128231080..128231222,-	p1@ENST00000500112, p1@uc003ysa.1
3.81e-26	FFCP PHASE2:Hg19::chr17:19651654..19651665,-	p3@ALDH3A1
3.81e-26	FFCP PHASE1:Hg19::chr17:19651654..19651665,-	p3@ALDH3A1
6.73e-26	FFCP PHASE2:Hg19::chr16:68269971..68270059,-	p1@ESRP2
6.73e-26	FFCP PHASE1:Hg19::chr16:68269971..68270059,-	p1@ESRP2
3.18e-25	FFCP PHASE1:Hg19::chr6:64281946..64281977,+	p12@PTP4A1
3.18e-25	FFCP PHASE2:Hg19::chr6:64281946..64281977,+	p12@PTP4A1
1.33e-24	FFCP PHASE2:Hg19::chr2:238592039..238592054,+	p4@LRRFIP1
1.33e-24	FFCP PHASE1:Hg19::chr2:238592039..238592054,+	p4@LRRFIP1
2.5e-24	FFCP PHASE1:Hg19::chr18:47721315..47721430,-	p1@MYO5B
2.5e-24	FFCP PHASE2:Hg19::chr18:47721315..47721430,-	p1@MYO5B
6.79e-24	FFCP PHASE1:Hg19::chr4:41361616..41361632,+	p8@LIMCH1
6.79e-24	FFCP PHASE2:Hg19::chr4:41361616..41361632,+	p8@LIMCH1
8.3e-24	FFCP PHASE1:Hg19::chr9:124499430..124499462,+	p@chr9:124499430..124499462, +
8.3e-24	FFCP PHASE2:Hg19::chr9:124499430..124499462,+	p@chr9:124499430..124499462, +
1.18e-23	FFCP PHASE1:Hg19::chr4:41361634..41361643,+	p19@LIMCH1
1.18e-23	FFCP PHASE2:Hg19::chr4:41361634..41361643,+	p19@LIMCH1
3.83e-23	FFCP PHASE2:Hg19::chr2:211543115..211543126,+	p@chr2:211543115..211543126, +
3.83e-23	FFCP PHASE1:Hg19::chr2:211543115..211543126,+	p@chr2:211543115..211543126, +
5.47e-23	FFCP PHASE1:Hg19::chr4:41361774..41361783,+	p26@LIMCH1
5.47e-23	FFCP PHASE2:Hg19::chr4:41361774..41361783,+	p26@LIMCH1
5.63e-23	FFCP PHASE1:Mm9::chr16:34807407..34807430,+	p@chr16:34807407..34807430, +
5.63e-23	FFCP PHASE2:Mm9::chr16:34807407..34807430,+	p@chr16:34807407..34807430, +
1.03e-22	FFCP PHASE2:Hg19::chr1:207263643..207263662,+	p@chr1:207263643..207263662, +
1.03e-22	FFCP PHASE1:Hg19::chr17:7164410..7164457,-	p3@CLDN7
1.03e-22	FFCP PHASE2:Hg19::chr17:7164410..7164457,-	p3@CLDN7
1.03e-22	FFCP PHASE1:Hg19::chr1:207263643..207263662,+	p@chr1:207263643..207263662, +
1.37e-22	FFCP PHASE1:Hg19::chr7:1595831..1595858,-	p1@TMEM184A
1.37e-22	FFCP PHASE2:Hg19::chr7:1595831..1595858,-	p1@TMEM184A
1.75e-22	FFCP PHASE1:Hg19::chr6:64282212..64282247,+	p19@PTP4A1
1.75e-22	FFCP PHASE2:Hg19::chr6:64282212..64282247,+	p19@PTP4A1
2.01e-22	FFCP PHASE2:Mm9::chr2:91034924..91034946,-	p2@Nr1h3
2.01e-22	FFCP PHASE1:Mm9::chr2:91034924..91034946,-	p2@Nr1h3
2.02e-22	FFCP PHASE1:Hg19::chr3:161318448..161318456,+	p@chr3:161318448..161318456, +
2.02e-22	FFCP PHASE2:Hg19::chr3:161318448..161318456,+	p@chr3:161318448..161318456, +
2.04e-22	FFCP PHASE2:Hg19::chr2:211466992..211467008,+	p@chr2:211466992..211467008, +
2.04e-22	FFCP PHASE1:Hg19::chr2:211466992..211467008,+	p@chr2:211466992..211467008, +
2.58e-22	FFCP PHASE2:Hg19::chr2:226378208..226378213,+	p@chr2:226378208..226378213, +
2.58e-22	FFCP PHASE1:Hg19::chr2:226378208..226378213,+	p@chr2:226378208..226378213, +
9.27e-22	FFCP PHASE1:Mm9::chr1:173697275..173697301,+	p1@Slamf1
9.27e-22	FFCP PHASE2:Mm9::chr1:173697275..173697301,+	p1@Slamf1
1.27e-21	FFCP PHASE2:Hg19::chr13:76334824..76334862,+	p2@LMO7
1.27e-21	FFCP PHASE1:Hg19::chr13:76334824..76334862,+	p2@LMO7
1.3e-21	FFCP PHASE1:Hg19::chr2:234296792..234296806,+	p13@DGKD
1.3e-21	FFCP PHASE2:Hg19::chr2:234296792..234296806,+	p13@DGKD
1.56e-21	FFCP PHASE1:Mm9::chr11:61474548..61474552,+	p@chr11:61474548..61474552, +
1.56e-21	FFCP PHASE2:Mm9::chr11:61474548..61474552,+	p@chr11:61474548..61474552, +
2.84e-21	FFCP PHASE1:Mm9::chr13:41520525..41520563,-	p@chr13:41520525..41520563, -
2.84e-21	FFCP PHASE2:Mm9::chr13:41520525..41520563,-	p@chr13:41520525..41520563, -
3.33e-21	FFCP PHASE1:Hg19::chr16:87872769..87872797,-	p@chr16:87872769..87872797, -
3.33e-21	FFCP PHASE2:Hg19::chr16:87872769..87872797,-	p@chr16:87872769..87872797, -
3.48e-21	FFCP PHASE2:Mm9::chr16:34807285..34807303,+	p@chr16:34807285..34807303, +
3.48e-21	FFCP PHASE1:Mm9::chr16:34807285..34807303,+	p@chr16:34807285..34807303, +
3.59e-21	FFCP PHASE1:Hg19::chr7:101917482..101917507,+	p6@CUX1
3.59e-21	FFCP PHASE2:Hg19::chr7:101917482..101917507,+	p6@CUX1
5.73e-21	FFCP PHASE1:Hg19::chr9:140119618..140119635,+	p1@C9orf169
5.73e-21	FFCP PHASE2:Hg19::chr9:140119618..140119635,+	p1@C9orf169
7.22e-21	FFCP PHASE2:Hg19::chr14:64579753..64579770,+	p@chr14:64579753..64579770, +
7.22e-21	FFCP PHASE1:Hg19::chr14:64579753..64579770,+	p@chr14:64579753..64579770, +
9.91e-21	FFCP PHASE1:Hg19::chr16:68260798..68260800,-	p@chr16:68260798..68260800, -
9.91e-21	FFCP PHASE2:Hg19::chr16:68260798..68260800,-	p@chr16:68260798..68260800, -
1.27e-20	FFCP PHASE2:Hg19::chr1:100111394..100111419,+	p6@PALMD
1.27e-20	FFCP PHASE1:Hg19::chr1:100111394..100111419,+	p6@PALMD
1.28e-20	FFCP PHASE2:Hg19::chr2:211540478..211540490,+	p@chr2:211540478..211540490, +
1.28e-20	FFCP PHASE1:Hg19::chr2:211540478..211540490,+	p@chr2:211540478..211540490, +
1.59e-20	FFCP PHASE2:Hg19::chr2:211469821..211469857,+	p8@CPS1
1.59e-20	FFCP PHASE1:Hg19::chr2:211469821..211469857,+	p8@CPS1
1.99e-20	FFCP PHASE1:Hg19::chr7:158766986..158767004,+	p@chr7:158766986..158767004, +
1.99e-20	FFCP PHASE2:Hg19::chr7:158766986..158767004,+	p@chr7:158766986..158767004, +
2.04e-20	FFCP PHASE1:Hg19::chr21:44817397..44817432,-	p@chr21:44817397..44817432, -
2.04e-20	FFCP PHASE2:Hg19::chr21:44817397..44817432,-	p@chr21:44817397..44817432, -
2.23e-20	FFCP PHASE2:Hg19::chr20:62168672..62168713,-	p1@PTK6
2.23e-20	FFCP PHASE1:Hg19::chr20:62168672..62168713,-	p1@PTK6
2.89e-20	FFCP PHASE2:Hg19::chr2:233244473..233244503,+	p1@AK297894
2.89e-20	FFCP PHASE1:Hg19::chr2:233244473..233244503,+	p1@AK297894
2.89e-20	FFCP PHASE1:Hg19::chr2:233246793..233246841,-	p1@ENST00000441266
2.89e-20	FFCP PHASE2:Hg19::chr8:128241234..128241241,-	p7@uc003ysb.2
2.89e-20	FFCP PHASE2:Hg19::chr2:53732986..53732989,-	p@chr2:53732986..53732989, -
2.89e-20	FFCP PHASE2:Hg19::chr2:233244912..233244922,+	p2@AK297894
2.89e-20	FFCP PHASE1:Hg19::chr16:87874486..87874492,-	p@chr16:87874486..87874492, -
2.89e-20	FFCP PHASE2:Hg19::chr16:87874486..87874492,-	p@chr16:87874486..87874492, -
2.89e-20	FFCP PHASE1:Hg19::chr2:53732986..53732989,-	p@chr2:53732986..53732989, -
2.89e-20	FFCP PHASE1:Hg19::chr16:87869864..87869878,+	p@chr16:87869864..87869878, +
2.89e-20	FFCP PHASE2:Hg19::chr17:79098633..79098647,-	p@chr17:79098633..79098647, -
2.89e-20	FFCP PHASE2:Hg19::chr16:87869864..87869878,+	p@chr16:87869864..87869878, +
2.89e-20	FFCP PHASE1:Hg19::chr8:128241234..128241241,-	p7@uc003ysb.2
2.89e-20	FFCP PHASE2:Hg19::chr2:233246459..233246472,+	p9@ALPP
2.89e-20	FFCP PHASE1:Hg19::chr2:233246932..233246943,+	p6@ALPP
2.89e-20	FFCP PHASE2:Hg19::chr2:233246932..233246943,+	p6@ALPP
2.89e-20	FFCP PHASE1:Hg19::chr2:233244912..233244922,+	p2@AK297894
2.89e-20	FFCP PHASE1:Hg19::chr17:79098633..79098647,-	p@chr17:79098633..79098647, -
2.89e-20	FFCP PHASE1:Hg19::chr2:233246459..233246472,+	p9@ALPP
2.89e-20	FFCP PHASE2:Hg19::chr2:233246793..233246841,-	p1@ENST00000441266

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