UBERON:0000160
From FANTOM5_SSTAR
| Name: | intestine | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine] | ||
| Xrefs: |
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| Synonyms: | "bowel" EXACT [] | ||
| Comments: | MA also has a class MA:0001524 bowel, not clear how this is different | ||
| Alt_id: | UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|---|
| part_of: | UBERON:0005409(gastrointestinal system) |
Children
| derives from: | FF:0011265 (mouse intestine- neonate N00 sample),FF:0011285 (mouse intestine- adult sample),FF:0011330 (mouse intestine- embryo E13 sample),FF:0011362 (mouse intestine- embryo E16 sample),FF:0011370 (mouse intestine- embryo E17 sample),FF:0011404 (mouse intestine- neonate N06 sample),FF:0011411 (mouse intestine- neonate N07 sample),FF:0011418 (mouse intestine- neonate N10 sample),FF:0011431 (mouse intestine- neonate N20 sample),FF:0011441 (mouse intestine- embryo E15 sample),FF:0011480 (mouse intestine- neonate N25 sample),FF:0011481 (mouse intestine- neonate N30 sample),FF:0011504 (mouse intestine- neonate N01 sample),FF:0011511 (mouse intestine- embryo E18 sample),FF:0100003 (intestinal cell line sample) |
|---|---|
| part of: | UBERON:0000059 (large intestine),UBERON:0001242 (intestinal mucosa),UBERON:0001262 (wall of intestine),UBERON:0001277 (intestinal epithelium),UBERON:0002108 (small intestine),CL:0002504 (enteric smooth muscle cell),CL:0002563 (intestinal epithelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10252-104B9 (Ileum epithelium, pool1)
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10252-104B9 (Ileum epithelium, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000160 (intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.48e-88 | FFCP PHASE2:Hg19::chr16:1275258..1275289,-#_ed23b68898094d50ad0295e1bb4160e6 | p1@TPSG1 |
| 3.48e-88 | FFCP PHASE1:Hg19::chr16:1275258..1275289,-#_ed23b68898094d50ad0295e1bb4160e6 | p1@TPSG1 |
| 7.07e-88 | FFCP PHASE2:Hg19::chr1:167059763..167059776,-#_88d7b9b7852ace5d1093fac910282463 | p4@GPA33 |
| 7.07e-88 | FFCP PHASE1:Hg19::chr1:167059763..167059776,-#_88d7b9b7852ace5d1093fac910282463 | p4@GPA33 |
| 1.38e-83 | FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_7284ab5835be9adbae3d7261a432754e | p3@CDX2 |
| 1.38e-83 | FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_7284ab5835be9adbae3d7261a432754e | p3@CDX2 |
| 1.7e-83 | FFCP PHASE1:Hg19::chrX:65382664..65382675,+#_f856dcd645d727d201618584c240717d | p8@HEPH |
| 1.7e-83 | FFCP PHASE2:Hg19::chrX:65382664..65382675,+#_f856dcd645d727d201618584c240717d | p8@HEPH |
| 1.39e-81 | FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_4708d7c22bf21f3484cd8cc93e97c42f | p2@NKX2-3 |
| 1.39e-81 | FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_4708d7c22bf21f3484cd8cc93e97c42f | p2@NKX2-3 |
| 4.08e-80 | FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_f95d034e942aa4396c4604038e205dce | p2@FABP2 |
| 4.08e-80 | FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_f95d034e942aa4396c4604038e205dce | p2@FABP2 |
| 4.9e-80 | FFCP PHASE2:Hg19::chr14:47203595..47203635,-#_079c1e37a8b152c9d7c160535bdd83fe | p@chr14:47203595..47203635, - |
| 4.9e-80 | FFCP PHASE1:Hg19::chr14:47203595..47203635,-#_079c1e37a8b152c9d7c160535bdd83fe | p@chr14:47203595..47203635, - |
| 4.9e-80 | FFCP PHASE2:Hg19::chr2:128293323..128293332,+#_079c1e37a8b152c9d7c160535bdd83fe | p4@MYO7B |
| 4.9e-80 | FFCP PHASE1:Hg19::chr2:128293323..128293332,+#_079c1e37a8b152c9d7c160535bdd83fe | p4@MYO7B |
| 1.23e-77 | FFCP PHASE1:Hg19::chrX:65382622..65382653,+#_89b7c266457fe788a59c52a0dfd573b4 | p3@HEPH |
| 1.23e-77 | FFCP PHASE2:Hg19::chrX:65382622..65382653,+#_89b7c266457fe788a59c52a0dfd573b4 | p3@HEPH |
| 1.84e-77 | FFCP PHASE1:Hg19::chr5:180326145..180326166,+#_c23dc9d2bfb318429d1cdb1ce17c8210 | p1@BTNL8 |
| 1.84e-77 | FFCP PHASE2:Hg19::chr5:180326145..180326166,+#_c23dc9d2bfb318429d1cdb1ce17c8210 | p1@BTNL8 |
| 2.7e-77 | FFCP PHASE2:Hg19::chr5:180415839..180415851,+#_c959ae783476e82b91a798e8d4ec2245 | p2@BTNL3 |
| 2.7e-77 | FFCP PHASE1:Hg19::chr5:180415839..180415851,+#_c959ae783476e82b91a798e8d4ec2245 | p2@BTNL3 |
| 4.81e-77 | FFCP PHASE2:Hg19::chr11:69294647..69294668,-#_06f7a2421c79b20a251164ad3f6d2bf7 | p1@ENST00000542064 |
| 4.81e-77 | FFCP PHASE1:Hg19::chr11:69294647..69294668,-#_06f7a2421c79b20a251164ad3f6d2bf7 | p1@ENST00000542064 |
| 2.02e-76 | FFCP PHASE1:Hg19::chr10:101292921..101292931,+#_ac8dee1d4edbab6e5e68d76a725c7ddd | p4@NKX2-3 |
| 2.02e-76 | FFCP PHASE2:Hg19::chr1:45253840..45253843,-#_ac8dee1d4edbab6e5e68d76a725c7ddd | p1@BEST4 |
| 2.02e-76 | FFCP PHASE1:Hg19::chr1:45253840..45253843,-#_ac8dee1d4edbab6e5e68d76a725c7ddd | p1@BEST4 |
| 2.02e-76 | FFCP PHASE2:Hg19::chr10:101292921..101292931,+#_ac8dee1d4edbab6e5e68d76a725c7ddd | p4@NKX2-3 |
| 2.28e-73 | FFCP PHASE1:Hg19::chr17:48844868..48844891,-#_5eeee8e1b0e3617479ccee715f99429b | p1@LINC00483 |
| 2.28e-73 | FFCP PHASE2:Hg19::chr17:48844868..48844891,-#_5eeee8e1b0e3617479ccee715f99429b | p1@LINC00483 |
| 1.6e-72 | FFCP PHASE1:Hg19::chr7:107443661..107443675,-#_80bcd3c9414c69be9c24a5cc5ef63d5f | p1@SLC26A3 |
| 1.6e-72 | FFCP PHASE2:Hg19::chr7:107443661..107443675,-#_80bcd3c9414c69be9c24a5cc5ef63d5f | p1@SLC26A3 |
| 2.17e-72 | FFCP PHASE2:Hg19::chr5:180326100..180326136,+#_ca3637fa11e25914781f7b93cd6437d5 | p2@BTNL8 |
| 2.17e-72 | FFCP PHASE1:Hg19::chr5:180326100..180326136,+#_ca3637fa11e25914781f7b93cd6437d5 | p2@BTNL8 |
| 2.33e-72 | FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_b13549a9d971edeebb6f63d86636cf23 | p8@CDX2 |
| 2.33e-72 | FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_b13549a9d971edeebb6f63d86636cf23 | p8@CDX2 |
| 1.05e-69 | FFCP PHASE1:Hg19::chr14:103389369..103389380,+#_27c4f7551f5f79be9fec1bbe03d041bc | p3@AMN |
| 1.05e-69 | FFCP PHASE2:Hg19::chr14:103389369..103389380,+#_27c4f7551f5f79be9fec1bbe03d041bc | p3@AMN |
| 1.15e-69 | FFCP PHASE1:Hg19::chr1:167059674..167059697,-#_ba097fa83511e4ec1a0299bc57713a91 | p3@GPA33 |
| 1.15e-69 | FFCP PHASE2:Hg19::chr1:167059674..167059697,-#_ba097fa83511e4ec1a0299bc57713a91 | p3@GPA33 |
| 1.87e-69 | FFCP PHASE2:Hg19::chr17:48844903..48844922,-#_4826c4a5a2174c2b4cbba04fc4f920b0 | p2@LINC00483 |
| 1.87e-69 | FFCP PHASE1:Hg19::chr17:48844903..48844922,-#_4826c4a5a2174c2b4cbba04fc4f920b0 | p2@LINC00483 |
| 3.96e-69 | FFCP PHASE2:Mm9::chr8:77396650..77396662,+#_955879a7b34ed27ba93f91a8ee32b7fa | p4@Isx |
| 3.96e-69 | FFCP PHASE1:Mm9::chr8:77396650..77396662,+#_955879a7b34ed27ba93f91a8ee32b7fa | p4@Isx |
| 1.08e-68 | FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_c5e157a3441db6eb3fa701a0e6e27f4a | p5@CDX2 |
| 1.08e-68 | FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_c5e157a3441db6eb3fa701a0e6e27f4a | p5@CDX2 |
| 5.52e-68 | FFCP PHASE1:Hg19::chr19:50691437..50691453,+#_afa29972f85ce579cd94816f56633e3e | p2@MYH14 |
| 5.52e-68 | FFCP PHASE2:Hg19::chr19:50691437..50691453,+#_afa29972f85ce579cd94816f56633e3e | p2@MYH14 |
| 5.62e-67 | FFCP PHASE1:Hg19::chr13:28552822..28552831,-#_09cdea1a08e2ac04cda6dbb6d71f7c44 | p@chr13:28552822..28552831, - |
| 5.62e-67 | FFCP PHASE2:Hg19::chr13:28552822..28552831,-#_09cdea1a08e2ac04cda6dbb6d71f7c44 | p@chr13:28552822..28552831, - |
| 6.02e-67 | FFCP PHASE2:Mm9::chr5:148118809..148118832,-#_1d0f0a4c67b5d62cf45c554595fbbaca | p5@Cdx2 |
| 6.02e-67 | FFCP PHASE1:Mm9::chr5:148118809..148118832,-#_1d0f0a4c67b5d62cf45c554595fbbaca | p5@Cdx2 |
| 6.2e-67 | FFCP PHASE2:Hg19::chr15:40648275..40648301,+#_5a02a09fc14f59436faedd6c644bdfbb | p@chr15:40648275..40648301, + |
| 6.2e-67 | FFCP PHASE2:Hg19::chr4:57138437..57138479,+#_5a02a09fc14f59436faedd6c644bdfbb | p1@KIAA1211 |
| 6.2e-67 | FFCP PHASE1:Hg19::chr11:114430588..114430608,-#_5a02a09fc14f59436faedd6c644bdfbb | p1@FAM55A |
| 6.2e-67 | FFCP PHASE1:Hg19::chr15:40648275..40648301,+#_5a02a09fc14f59436faedd6c644bdfbb | p@chr15:40648275..40648301, + |
| 6.2e-67 | FFCP PHASE1:Hg19::chr4:57138437..57138479,+#_5a02a09fc14f59436faedd6c644bdfbb | p1@KIAA1211 |
| 6.2e-67 | FFCP PHASE2:Hg19::chr11:114430588..114430608,-#_5a02a09fc14f59436faedd6c644bdfbb | p1@FAM55A |
| 6.84e-67 | FFCP PHASE1:Hg19::chr1:167059705..167059714,-#_225e97828c4fefae28ffdd0f794748d2 | p6@GPA33 |
| 6.84e-67 | FFCP PHASE1:Hg19::chr13:28552867..28552874,-#_225e97828c4fefae28ffdd0f794748d2 | p@chr13:28552867..28552874, - |
| 6.84e-67 | FFCP PHASE2:Hg19::chr13:28552867..28552874,-#_225e97828c4fefae28ffdd0f794748d2 | p@chr13:28552867..28552874, - |
| 6.84e-67 | FFCP PHASE2:Hg19::chr1:167059705..167059714,-#_225e97828c4fefae28ffdd0f794748d2 | p6@GPA33 |
| 1.01e-66 | FFCP PHASE1:Hg19::chr3:124646645..124646669,-#_48c8aee46a817a315e8457019fcc3be4 | p3@MUC13 |
| 1.01e-66 | FFCP PHASE2:Hg19::chr3:124646645..124646669,-#_48c8aee46a817a315e8457019fcc3be4 | p3@MUC13 |
| 9.77e-66 | FFCP PHASE1:Hg19::chr21:44151895..44151908,+#_d7cf6ca708aedd21b382276558198c8a | p6@PDE9A |
| 9.77e-66 | FFCP PHASE1:Hg19::chr11:46958029..46958041,+#_d7cf6ca708aedd21b382276558198c8a | p4@C11orf49 |
| 9.77e-66 | FFCP PHASE2:Hg19::chr11:1092389..1092394,+#_d7cf6ca708aedd21b382276558198c8a | p14@MUC2 |
| 9.77e-66 | FFCP PHASE1:Hg19::chr11:1092389..1092394,+#_d7cf6ca708aedd21b382276558198c8a | p14@MUC2 |
| 9.77e-66 | FFCP PHASE2:Hg19::chr1:155912696..155912738,-#_d7cf6ca708aedd21b382276558198c8a | p@chr1:155912696..155912738, - |
| 9.77e-66 | FFCP PHASE1:Hg19::chr15:45689453..45689466,-#_d7cf6ca708aedd21b382276558198c8a | p11@GATM |
| 9.77e-66 | FFCP PHASE1:Hg19::chr1:155912696..155912738,-#_d7cf6ca708aedd21b382276558198c8a | p@chr1:155912696..155912738, - |
| 9.77e-66 | FFCP PHASE2:Hg19::chr21:44151895..44151908,+#_d7cf6ca708aedd21b382276558198c8a | p6@PDE9A |
| 9.77e-66 | FFCP PHASE2:Hg19::chr15:45689453..45689466,-#_d7cf6ca708aedd21b382276558198c8a | p11@GATM |
| 9.77e-66 | FFCP PHASE2:Hg19::chr11:46958029..46958041,+#_d7cf6ca708aedd21b382276558198c8a | p4@C11orf49 |
| 4.15e-65 | FFCP PHASE1:Mm9::chr7:114809099..114809120,+#_c6314fd8ca83f6c2368af742db163c6a | p@chr7:114809099..114809120, + |
| 4.15e-65 | FFCP PHASE2:Mm9::chr7:114809099..114809120,+#_c6314fd8ca83f6c2368af742db163c6a | p@chr7:114809099..114809120, + |
| 1.47e-63 | FFCP PHASE2:Hg19::chr13:28552795..28552806,-#_64ad17a554db9ca0a7481fb122631ba2 | p@chr13:28552795..28552806, - |
| 1.47e-63 | FFCP PHASE1:Hg19::chr13:28552795..28552806,-#_64ad17a554db9ca0a7481fb122631ba2 | p@chr13:28552795..28552806, - |
| 1.87e-63 | FFCP PHASE2:Hg19::chr1:167059607..167059633,-#_2fe019901cbe7a205bfdec33a519b012 | p1@GPA33 |
| 1.87e-63 | FFCP PHASE2:Hg19::chr16:23766308..23766323,+#_2fe019901cbe7a205bfdec33a519b012 | p2@CHP2 |
| 1.87e-63 | FFCP PHASE1:Hg19::chr16:23766308..23766323,+#_2fe019901cbe7a205bfdec33a519b012 | p2@CHP2 |
| 1.87e-63 | FFCP PHASE1:Hg19::chr1:167059607..167059633,-#_2fe019901cbe7a205bfdec33a519b012 | p1@GPA33 |
| 2.21e-63 | FFCP PHASE1:Mm9::chr7:35814319..35814327,-#_b877734bb74b41e2638f415963725181 | p@chr7:35814319..35814327, - |
| 2.21e-63 | FFCP PHASE2:Mm9::chr7:35814319..35814327,-#_b877734bb74b41e2638f415963725181 | p@chr7:35814319..35814327, - |
| 4.58e-63 | FFCP PHASE2:Hg19::chr8:48911486..48911495,-#_799d60ceaf61fc8be6ec33ad8bf6ccf8 | p@chr8:48911486..48911495, - |
| 4.58e-63 | FFCP PHASE1:Hg19::chr8:48911486..48911495,-#_799d60ceaf61fc8be6ec33ad8bf6ccf8 | p@chr8:48911486..48911495, - |
| 5.63e-63 | FFCP PHASE2:Hg19::chrX:65382591..65382602,+#_3070d0fe362e76ce66d0d16851595bd8 | p9@HEPH |
| 5.63e-63 | FFCP PHASE1:Hg19::chrX:65382591..65382602,+#_3070d0fe362e76ce66d0d16851595bd8 | p9@HEPH |
| 8.34e-63 | FFCP PHASE2:Mm9::chr7:148106817..148106828,+#_38b9259134d4876a83738447c2e59628 | p3@Nlrp6 |
| 8.34e-63 | FFCP PHASE1:Mm9::chr7:148106817..148106828,+#_38b9259134d4876a83738447c2e59628 | p3@Nlrp6 |
| 9.83e-63 | FFCP PHASE1:Mm9::chr9:56091842..56091854,-#_1bc286effe55de877b3a163b73c21521 | p@chr9:56091842..56091854, - |
| 9.83e-63 | FFCP PHASE2:Mm9::chr9:56091842..56091854,-#_1bc286effe55de877b3a163b73c21521 | p@chr9:56091842..56091854, - |
| 1.44e-62 | FFCP PHASE2:Hg19::chr12:14849470..14849540,-#_bff5b053adb742e07b68d4317afa86c6 | p1@GUCY2C |
| 1.44e-62 | FFCP PHASE1:Hg19::chr12:14849470..14849540,-#_bff5b053adb742e07b68d4317afa86c6 | p1@GUCY2C |
| 5.34e-62 | FFCP PHASE1:Mm9::chr2:14096119..14096136,+#_3d1039088aca7fb3bea69861d2998c29 | p3@Fam23a |
| 5.34e-62 | FFCP PHASE2:Mm9::chr2:14096119..14096136,+#_3d1039088aca7fb3bea69861d2998c29 | p3@Fam23a |
| 6.28e-62 | FFCP PHASE1:Mm9::chr6:48845213..48845232,+#_4394b4944af4e1140f15c7791f3852f9 | p4@Abp1 |
| 6.28e-62 | FFCP PHASE2:Mm9::chr6:48845213..48845232,+#_4394b4944af4e1140f15c7791f3852f9 | p4@Abp1 |
| 7.0e-62 | FFCP PHASE2:Hg19::chr13:28543316..28543329,-#_85f74d0bcc99ae791a4d47d88de62b24 | p4@CDX2 |
| 7.0e-62 | FFCP PHASE1:Hg19::chr13:28543316..28543329,-#_85f74d0bcc99ae791a4d47d88de62b24 | p4@CDX2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
