FFCP PHASE1:Hg19::chr19:682037..682060,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:682037..682060,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_at_chr19:682037..682060,+ | |description=CAGE_peak_at_chr19:682037..682060,+ | ||
|id=chr19:682037..682060,+ | |id=chr19:682037..682060,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002541;2.73e-16;3!CL:0002615;4.99e-16;3!CL:1000746;9.78e-15;7!CL:1000612;9.78e-15;7!CL:0002581;1.40e-12;1!CL:0002616;3.08e-12;1!CL:0002537;7.11e-10;5!CL:0002188;8.49e-10;5!CL:0000349;9.06e-10;19!CL:0002681;7.87e-09;12!CL:0002584;7.87e-09;12!CL:0000136;2.68e-08;13!CL:1000449;3.66e-07;15!CL:0000650;9.53e-07;2!CL:1000500;9.53e-07;2!CL:1000618;9.53e-07;2!CL:1001318;9.53e-07;2!CL:0002173;9.53e-07;2!CL:0002600;9.53e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.73e-16,3;CL:0002615,5.38e-16,3;CL:1000746,9.79e-15,7;CL:1000612,9.79e-15,7;CL:0002581,1.11e-12,1;CL:0002616,1.96e-12,1;CL:0002537,6.22e-10,5;CL:0000349,8.46e-10,19;CL:0002188,9.28e-10,5;CL:0002681,7.87e-09,12;CL:0002584,7.87e-09,12;CL:0000136,2.77e-07,15;CL:1000449,3.66e-07,15;CL:0000650,8.52e-07,2;CL:1000500,8.52e-07,2;CL:1000618,8.52e-07,2;CL:1001318,8.52e-07,2;CL:0002173,8.52e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.69e-09!14;UBERON:0000158!1.69e-09!14;UBERON:0000478!8.09e-09!24;UBERON:0004923!5.88e-08!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0005406;4.89e-23;2!UBERON:0005631;2.40e-18;10!UBERON:0000158;2.40e-18;10!UBERON:0003688;2.51e-17;6!UBERON:0002358;2.51e-17;6!UBERON:0003684;2.51e-17;6!UBERON:0001178;2.51e-17;6!UBERON:0003124;2.73e-16;3!UBERON:0000920;2.73e-16;3!UBERON:0000074;9.78e-15;7!UBERON:0001229;9.78e-15;7!UBERON:0004457;9.43e-12;9!UBERON:0000042;9.43e-12;9!UBERON:0000478;1.27e-11;24!UBERON:0001225;7.87e-09;12!UBERON:0008987;7.87e-09;12!UBERON:0000305;2.69e-07;7!UBERON:0001851;3.66e-07;15!UBERON:0006555;3.66e-07;15!UBERON:0000353;3.66e-07;15!UBERON:0004819;3.66e-07;15!UBERON:0001285;3.66e-07;15!UBERON:0007684;3.66e-07;15!UBERON:0003567;9.53e-07;2!UBERON:0003838;9.53e-07;2!UBERON:0003586;9.53e-07;2!UBERON:0005169;9.53e-07;2!UBERON:0002321;9.53e-07;2!UBERON:0005215;9.53e-07;2!UBERON:0002303;9.53e-07;2!UBERON:0002319;9.53e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005406,2.49e-23,2;UBERON:0003688,3.31e-17,6;UBERON:0002358,3.31e-17,6;UBERON:0003684,3.31e-17,6;UBERON:0001178,3.31e-17,6;UBERON:0000920,2.73e-16,3;UBERON:0010532,9.79e-15,7;UBERON:0000074,9.79e-15,7;UBERON:0001229,9.79e-15,7;UBERON:0001230,9.79e-15,7;UBERON:0003220,9.79e-15,7;UBERON:0005749,9.79e-15,7;UBERON:0004199,9.79e-15,7;UBERON:0004209,9.79e-15,7;UBERON:0004198,9.79e-15,7;UBERON:0005631,3.19e-13,14;UBERON:0000158,3.19e-13,14;UBERON:0005103,5.71e-13,8;UBERON:0000083,5.71e-13,8;UBERON:0009201,5.71e-13,8;UBERON:0006553,5.71e-13,8;UBERON:0003074,5.71e-13,8;UBERON:0003060,5.71e-13,8;UBERON:0000478,1.24e-11,24;UBERON:0000080,1.36e-11,9;UBERON:0002120,1.36e-11,9;UBERON:0004875,1.36e-11,9;UBERON:0005721,1.36e-11,9;UBERON:0005754,1.36e-11,9;UBERON:0007297,1.36e-11,9;UBERON:0004876,1.38e-09,11;UBERON:0004457,6.88e-09,12;UBERON:0000042,6.88e-09,12;UBERON:0001225,7.87e-09,12;UBERON:0008987,7.87e-09,12;UBERON:0003887,7.87e-09,12;UBERON:0004923,1.11e-07,66;UBERON:0003124,1.72e-07,7;UBERON:0000305,2.45e-07,7;UBERON:0001851,3.66e-07,15;UBERON:0004211,3.66e-07,15;UBERON:0009773,3.66e-07,15;UBERON:0000353,3.66e-07,15;UBERON:0001231,3.66e-07,15;UBERON:0001285,3.66e-07,15;UBERON:0007684,3.66e-07,15;UBERON:0004208,3.66e-07,15;UBERON:0003886,5.60e-07,54;UBERON:0003567,8.52e-07,2;UBERON:0003838,8.52e-07,2;UBERON:0003586,8.52e-07,2;UBERON:0005169,8.52e-07,2;UBERON:0002321,8.52e-07,2;UBERON:0005215,8.52e-07,2;UBERON:0002303,8.52e-07,2;UBERON:0002319,8.52e-07,2;UBERON:0006555,9.58e-07,16;UBERON:0004819,9.58e-07,16 | |||
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| ||
|short_description=p@chr19:682037..682060,+ | |short_description=p@chr19:682037..682060,+ | ||
}} | }} |
Latest revision as of 18:21, 27 July 2015
Short description: | p@chr19:682037..682060, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:682037..682060, + |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.73e-16 | 3 |
adipocyte of omentum tissue | 5.38e-16 | 3 |
glomerular cell | 9.79e-15 | 7 |
kidney corpuscule cell | 9.79e-15 | 7 |
perirenal preadipocyte | 1.11e-12 | 1 |
perirenal adipocyte cell | 1.96e-12 | 1 |
amnion mesenchymal stem cell | 6.22e-10 | 5 |
extraembryonic cell | 8.46e-10 | 19 |
glomerular endothelial cell | 9.28e-10 | 5 |
kidney cortical cell | 7.87e-09 | 12 |
renal cortical epithelial cell | 7.87e-09 | 12 |
fat cell | 2.77e-07 | 15 |
epithelial cell of nephron | 3.66e-07 | 15 |
mesangial cell | 8.52e-07 | 2 |
kidney interstitial cell | 8.52e-07 | 2 |
juxtaglomerular complex cell | 8.52e-07 | 2 |
renal interstitial pericyte | 8.52e-07 | 2 |
extraglomerular mesangial cell | 8.52e-07 | 2 |