FFCP PHASE1:Hg19::chr17:46692624..46692659,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3218 | |EntrezGene=3218 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5119 | |HGNC=5119 | ||
|TSSclassifier=strong | |||
|UniProt=P17481 | |UniProt=P17481 | ||
|association_with_transcript=0bp_to_ENST00000239144_5end | |association_with_transcript=0bp_to_ENST00000239144_5end | ||
|cluster_id=chr17:46692624..46692659,- | |||
|coexpression_cluster_id=C1783 | |||
|description=CAGE_peak_3_at_HOXB8_5end | |description=CAGE_peak_3_at_HOXB8_5end | ||
|id=chr17:46692624..46692659,- | |id=chr17:46692624..46692659,- | ||
|ontology_enrichment_celltype=CL:1000507!4.45e-13!12;CL:1000494!4.45e-13!12;CL:1000497!7.87e-13!18;CL:0002518!7.87e-13!18;CL:1000449!1.23e-12!16;CL:0002681!3.91e-09!13;CL:0002584!3.91e-09!13 | |ontology_enrichment_celltype=CL:1000507!4.45e-13!12;CL:1000494!4.45e-13!12;CL:1000497!7.87e-13!18;CL:0002518!7.87e-13!18;CL:1000449!1.23e-12!16;CL:0002681!3.91e-09!13;CL:0002584!3.91e-09!13 | ||
|ontology_enrichment_celltype_v019=CL:1000507;8.33e-29;10!CL:1000494;8.33e-29;10!CL:1000497;3.29e-27;17!CL:0002518;3.29e-27;17!CL:1000449;2.62e-26;15!CL:0002681;3.03e-18;12!CL:0002584;3.03e-18;12!CL:0000239;6.78e-10;3!CL:1000615;6.78e-10;3!CL:0002306;6.78e-10;3!CL:0002564;2.49e-09;3!CL:0000650;6.40e-07;2!CL:1000500;6.40e-07;2!CL:1000618;6.40e-07;2!CL:1001318;6.40e-07;2!CL:0002173;6.40e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.06e-28,10;CL:1000494,1.06e-28,10;CL:1000497,4.53e-27,17;CL:0002518,4.53e-27,17;CL:1000449,3.74e-26,15;CL:0002681,3.97e-18,12;CL:0002584,3.97e-18,12;CL:0000239,6.49e-10,3;CL:1000615,6.49e-10,3;CL:0002306,6.49e-10,3;CL:0002564,3.44e-09,3;CL:0000650,7.67e-07,2;CL:1000500,7.67e-07,2;CL:1000618,7.67e-07,2;CL:1001318,7.67e-07,2;CL:0002173,7.67e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006241;7.39e-11;3!UBERON:0003057;7.39e-11;3!UBERON:0007297;9.55e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!9.48e-20!32;UBERON:0000080!3.97e-15!18;UBERON:0002120!3.97e-15!18;UBERON:0004875!3.97e-15!18;UBERON:0005721!3.97e-15!18;UBERON:0005754!3.97e-15!18;UBERON:0007297!3.97e-15!18;UBERON:0002113!1.33e-14!27;UBERON:0003918!1.33e-14!27;UBERON:0005095!1.33e-14!27;UBERON:0007687!1.33e-14!27;UBERON:0003887!6.98e-14!21;UBERON:0006555!7.26e-14!17;UBERON:0005103!7.26e-14!17;UBERON:0000083!7.26e-14!17;UBERON:0009201!7.26e-14!17;UBERON:0004819!7.26e-14!17;UBERON:0006553!7.26e-14!17;UBERON:0003074!7.26e-14!17;UBERON:0003060!7.26e-14!17;UBERON:0004876!4.21e-13!20;UBERON:0009773!4.45e-13!12;UBERON:0001231!4.45e-13!12;UBERON:0004810!4.45e-13!12;UBERON:0001008!5.01e-13!45;UBERON:0004211!1.23e-12!16;UBERON:0001285!1.23e-12!16;UBERON:0007684!1.23e-12!16;UBERON:0003220!1.23e-12!16;UBERON:0004208!1.23e-12!16;UBERON:0006554!2.68e-12!44;UBERON:0000058!3.05e-12!26;UBERON:0002417!9.57e-12!61;UBERON:0000916!9.57e-12!61;UBERON:0005177!3.55e-11!107;UBERON:0003886!5.55e-11!63;UBERON:0002553!9.22e-10!70;UBERON:0005172!1.21e-09!55;UBERON:0005173!1.21e-09!55;UBERON:0003064!1.78e-09!37;UBERON:0001225!3.91e-09!13;UBERON:0008987!3.91e-09!13;UBERON:0000464!3.53e-08!104;UBERON:0005174!2.00e-07!5;UBERON:0001137!2.00e-07!5;UBERON:0009569!2.84e-07!113;UBERON:0000466!3.85e-07!126;UBERON:0001851!6.60e-07!16;UBERON:0003586!9.12e-07!5 | |ontology_enrichment_uberon=UBERON:0000489!9.48e-20!32;UBERON:0000080!3.97e-15!18;UBERON:0002120!3.97e-15!18;UBERON:0004875!3.97e-15!18;UBERON:0005721!3.97e-15!18;UBERON:0005754!3.97e-15!18;UBERON:0007297!3.97e-15!18;UBERON:0002113!1.33e-14!27;UBERON:0003918!1.33e-14!27;UBERON:0005095!1.33e-14!27;UBERON:0007687!1.33e-14!27;UBERON:0003887!6.98e-14!21;UBERON:0006555!7.26e-14!17;UBERON:0005103!7.26e-14!17;UBERON:0000083!7.26e-14!17;UBERON:0009201!7.26e-14!17;UBERON:0004819!7.26e-14!17;UBERON:0006553!7.26e-14!17;UBERON:0003074!7.26e-14!17;UBERON:0003060!7.26e-14!17;UBERON:0004876!4.21e-13!20;UBERON:0009773!4.45e-13!12;UBERON:0001231!4.45e-13!12;UBERON:0004810!4.45e-13!12;UBERON:0001008!5.01e-13!45;UBERON:0004211!1.23e-12!16;UBERON:0001285!1.23e-12!16;UBERON:0007684!1.23e-12!16;UBERON:0003220!1.23e-12!16;UBERON:0004208!1.23e-12!16;UBERON:0006554!2.68e-12!44;UBERON:0000058!3.05e-12!26;UBERON:0002417!9.57e-12!61;UBERON:0000916!9.57e-12!61;UBERON:0005177!3.55e-11!107;UBERON:0003886!5.55e-11!63;UBERON:0002553!9.22e-10!70;UBERON:0005172!1.21e-09!55;UBERON:0005173!1.21e-09!55;UBERON:0003064!1.78e-09!37;UBERON:0001225!3.91e-09!13;UBERON:0008987!3.91e-09!13;UBERON:0000464!3.53e-08!104;UBERON:0005174!2.00e-07!5;UBERON:0001137!2.00e-07!5;UBERON:0009569!2.84e-07!113;UBERON:0000466!3.85e-07!126;UBERON:0001851!6.60e-07!16;UBERON:0003586!9.12e-07!5 | ||
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| ||
|short_description=p3@HOXB8 | |short_description=p3@HOXB8 | ||
}} | }} |
Latest revision as of 07:35, 25 September 2015
Short description: | p3@HOXB8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXB8_5end |
Coexpression cluster: | C1783_alveolar_nonsmall_ductus_spinal_seminal_epididymis_somatostatinoma |
Association with transcript: | 0bp_to_ENST00000239144_5end |
EntrezGene: | HOXB8 |
HGNC: | 5119 |
UniProt: | P17481 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.06e-28 | 10 |
nephron tubule epithelial cell | 1.06e-28 | 10 |
kidney cell | 4.53e-27 | 17 |
kidney epithelial cell | 4.53e-27 | 17 |
epithelial cell of nephron | 3.74e-26 | 15 |
kidney cortical cell | 3.97e-18 | 12 |
renal cortical epithelial cell | 3.97e-18 | 12 |
brush border epithelial cell | 6.49e-10 | 3 |
kidney cortex tubule cell | 6.49e-10 | 3 |
epithelial cell of proximal tubule | 6.49e-10 | 3 |
nucleus pulposus cell of intervertebral disc | 3.44e-09 | 3 |
mesangial cell | 7.67e-07 | 2 |
kidney interstitial cell | 7.67e-07 | 2 |
juxtaglomerular complex cell | 7.67e-07 | 2 |
renal interstitial pericyte | 7.67e-07 | 2 |
extraglomerular mesangial cell | 7.67e-07 | 2 |