FF:11516-119H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005247 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005247 | ||
|accession_numbers=CAGE;DRX008425;DRR009297;DRZ000722;DRZ002107;DRZ012072;DRZ013457 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036996;DRR041362;DRZ007004 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000152 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.10!125.43!PAX8;;chr1:201979743..201979762,+!p1@ELF3!2.08!120.02!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.03!105.58!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!2.00!99.72!HOXB9;;chr17:36105042..36105060,-!p1@HNF1B!1.84!68.13!HNF1B;;chr1:209979467..209979494,-!p1@IRF6!1.83!74.00!IRF6;;chr17:46682321..46682362,-!p1@HOXB6!1.67!46.02!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!1.47!74.45!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.74!TFAP2A;;chr6:34204921..34204939,+!p3@HMGA1!1.39!674.09!HMGA1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.38!23.01!LHX1;;chr10:8096631..8096660,+!p1@GATA3!1.29!22.11!GATA3;;chr11:34642612..34642646,+!p1@EHF!1.28!18.05!EHF;;chr17:46622205..46622218,-!p3@HOXB2!1.27!20.30!HOXB2;;chr1:209979411..209979433,-!p2@IRF6!1.25!16.69!IRF6;;chr10:8096772..8096787,+!p2@GATA3!1.21!18.05!GATA3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.21!15.34!POU3F3;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.44!HOXD8;;chr6:34204672..34204692,+!p1@HMGA1!1.18!1564.31!HMGA1;;chr6:10415484..10415508,-!p3@TFAP2A!1.18!13.99!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!1.18!13.99!HOXA9;;chr16:86600426..86600441,+!p1@FOXC2!1.15!32.49!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.12!56.40!HMGA2;;chr21:38071430..38071456,+!p1@SIM2!1.12!12.18!SIM2;;chr7:27205106..27205134,-!p2@HOXA9!1.12!12.18!HOXA9;;chr12:66218212..66218244,+!p5@HMGA2!1.11!17.15!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!1.10!13.08!HOXB2;;chr10:102505493..102505546,+!p2@PAX2!1.10!11.73!PAX2;;chr7:27224795..27224840,-!p2@HOXA11!1.09!11.28!HOXA11;;chr1:6479968..6479986,-!p1@HES2!1.09!11.28!HES2;;chr12:66218003..66218018,+!p9@HMGA2!1.08!13.54!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!1.07!10.83!HOXB6;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.15!FOXQ1;;chr5:2751762..2751784,-!p1@IRX2!1.06!10.38!IRX2;;chr17:41623692..41623715,-!p1@ETV4!1.04!42.86!ETV4;;chr11:65554528..65554546,+!p1@OVOL1!1.04!9.93!OVOL1;;chr2:5832508..5832524,+!p1@SOX11!1.04!9.93!SOX11;;chr2:46524897..46524911,+!p2@EPAS1!1.02!26.62!EPAS1;;chr17:46622229..46622257,-!p6@HOXB2!1.01!10.83!HOXB2;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.02!NFE2L1;;chr17:70117153..70117174,+!p1@SOX9!0.99!93.40!SOX9;;chr6:10412600..10412637,-!p1@TFAP2A!0.98!14.44!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.98!13.54!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.96!13.08!ZFP64;;chr7:27192185..27192209,-!p1@HOXA3!0.96!8.12!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.96!8.12!HOXA11;;chr2:177053386..177053402,+!p1@HOXD1!0.96!8.12!HOXD1;;chr4:299227..299272,-!p1@ZNF732!0.96!8.12!ZNF732;;chr6:21593973..21593988,+!p1@SOX4!0.92!277.04!SOX4;;chr12:66218183..66218209,+!p4@HMGA2!0.92!14.44!HMGA2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.22!TFCP2L1;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.89!C11orf9;;chr12:54378923..54378966,+!p1@HOXC10!0.89!6.77!HOXC10;;chr7:27153454..27153469,-!p2@HOXA3!0.89!6.77!HOXA3;;chr13:73633131..73633149,+!p1@KLF5!0.88!74.45!KLF5;;chr20:31350184..31350200,+!p1@DNMT3B!0.87!13.99!DNMT3B;;chr1:24646002..24646013,+!p3@GRHL3!0.86!6.32!GRHL3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.86!6.32!HOXC5;;chr14:38064429..38064486,-!p1@FOXA1!0.86!6.32!FOXA1;;chr6:50786591..50786614,+!p1@TFAP2B!0.86!6.32!TFAP2B;;chr16:86600870..86600921,+!p2@FOXC2!0.86!6.32!FOXC2;;chr17:46703528..46703549,-!p5@HOXB9!0.86!6.32!HOXB9;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.02!HOXB7;;chr20:6748325..6748352,+!p1@BMP2!0.85!9.02!BMP2;;chr17:46667594..46667619,-!p1@HOXB3!0.84!5.87!HOXB3;;chr17:46692457..46692484,-!p2@HOXB8!0.84!5.87!HOXB8;;chr17:7493405..7493419,-!p1@SOX15!0.84!5.87!SOX15;;chr10:102505327..102505344,+!p1@PAX2!0.84!5.87!PAX2;;chr7:27196217..27196246,-!p2@HOXA7!0.84!5.87!HOXA7;;chr17:46622070..46622109,-!p1@HOXB2!0.83!13.54!HOXB2;;chr12:3069037..3069119,+!p2@TEAD4!0.82!20.76!TEAD4;;chr12:54447599..54447630,+!p3@HOXC4!0.81!6.77!HOXC4;;chr11:65554563..65554576,+!p2@OVOL1!0.81!5.41!OVOL1;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.41!IRX1;;chr21:38071403..38071428,+!p2@SIM2!0.81!5.41!SIM2;;chr16:51185318..51185348,-!p2@SALL1!0.81!5.41!SALL1;;chr12:66218836..66218888,+!p1@HMGA2!0.80!54.14!HMGA2;;chr2:239148671..239148686,-!p1@HES6!0.80!20.76!HES6;;chr17:46622114..46622138,-!p4@HOXB2!0.79!8.12!HOXB2;;chr11:65667846..65667868,-!p1@FOSL1!0.78!146.19!FOSL1;;chr17:46687959..46688007,-!p2@HOXB7!0.78!7.22!HOXB7;;chr17:46703826..46703845,-!p3@HOXB9!0.78!4.96!HOXB9;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.78!4.96!POU3F3;;chr2:176973498..176973524,+!p1@HOXD10!0.78!4.96!HOXD10;;chr3:111314186..111314204,-!p1@ZBED2!0.78!4.96!ZBED2;;chr5:2751785..2751808,-!p2@IRX2!0.78!4.96!IRX2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.77!14.44!ZC3H7B;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.44!PCBP4;;chr17:41622834..41622883,-!p6@ETV4!0.76!5.87!ETV4;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.37!MYBL2;;chr10:104155480..104155534,+!p2@NFKB2!0.75!32.94!NFKB2;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.22!HOXB4;;chr17:41622765..41622821,-!p2@ETV4!0.74!7.22!ETV4;;chr10:8095593..8095625,+!p3@GATA3!0.74!5.41!GATA3;;chr10:119302232..119302265,+!p1@EMX2!0.74!4.51!EMX2;;chr16:51185172..51185197,-!p1@SALL1!0.74!4.51!SALL1;;chr16:52581025..52581072,-!p1@TOX3!0.74!4.51!TOX3;;chr17:36105074..36105086,-!p2@HNF1B!0.74!4.51!HNF1B;;chr6:1610293..1610310,+!p1@FOXC1!0.73!7.67!FOXC1;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.32!TEAD2;;chr18:3450161..3450183,+!p1@TGIF1!0.72!162.43!TGIF1;;chr17:41623009..41623053,-!p4@ETV4!0.72!7.22!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.72!4.96!BNC1;;chr12:66218443..66218461,+!p8@HMGA2!0.71!5.41!HMGA2;;chr7:44143925..44143970,+!p1@AEBP1!0.70!101.97!AEBP1;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.75!SREBF2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.41!BCL3;;chr1:24645832..24645853,+!p1@GRHL3!0.70!4.06!GRHL3;;chr1:24645921..24645973,+!p2@GRHL3!0.70!4.06!GRHL3;;chr2:176972000..176972025,+!p4@HOXD11!0.70!4.06!HOXD11;;chr10:119302645..119302712,+!p3@EMX2!0.70!4.06!EMX2;;chr7:27213893..27213954,-!p1@HOXA10!0.70!4.06!HOXA10;;chr7:27219833..27219845,-!p7@HOXA10!0.70!4.06!HOXA10;;chr17:46675619..46675642,-!p5@HOXB6!0.70!4.06!HOXB6;;chr19:45504688..45504782,+!p1@RELB!0.69!27.07!RELB;;chr10:104154246..104154347,+!p3@NFKB2!0.68!26.17!NFKB2;;chr19:45252008..45252024,+!p2@BCL3!0.68!13.99!BCL3;;chr17:46621937..46621966,-!p2@HOXB2!0.68!11.28!HOXB2;;chr8:128748308..128748324,+!p2@MYC!0.67!118.21!MYC;;chr20:42295713..42295738,+!p2@MYBL2!0.67!24.82!MYBL2;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.87!ETV4;;chr11:63684602..63684664,-!p1@RCOR2!0.66!7.67!RCOR2;;chr15:80696703..80696754,+!p1@ARNT2!0.66!4.96!ARNT2;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.61!HOXB3;;chr17:46690839..46690884,-!p1@HOXB8!0.66!3.61!HOXB8;;chr5:3595977..3595999,+!p1@IRX1!0.66!3.61!IRX1;;chr6:10419824..10419840,-!p9@TFAP2A!0.66!3.61!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!0.66!3.61!TCF21;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.61!HOXA7;;chr7:27219849..27219867,-!p6@HOXA10!0.66!3.61!HOXA10;;chr2:16080659..16080685,+!p1@MYCN!0.66!3.61!MYCN;;chr2:177001290..177001315,+!p1@HOXD3!0.66!3.61!HOXD3;;chr2:5832493..5832507,+!p2@SOX11!0.66!3.61!SOX11;;chr7:26191809..26191890,+!p1@NFE2L3!0.65!19.85!NFE2L3;;chr6:21597765..21597779,+!p2@SOX4!0.64!31.58!SOX4;;chr5:76383133..76383186,-!p2@ZBED3!0.64!7.67!ZBED3;;chr19:17356436..17356481,-!p3@NR2F6!0.64!6.32!NR2F6;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.47!MLLT11;;chr6:44233252..44233296,-!p1@NFKBIE!0.63!37.90!NFKBIE;;chr19:49865646..49865718,-!p1@TEAD2!0.63!33.39!TEAD2;;chr17:7492684..7492778,-!p2@SOX15!0.63!7.67!SOX15;;chr12:80084303..80084332,-!p1@PAWR!0.62!22.11!PAWR;;chr8:60031619..60031676,-!p1@TOX!0.62!7.67!TOX;;chr1:247171347..247171366,-!p2@ZNF695!0.62!6.32!ZNF695;;chr10:119303078..119303169,+!p2@EMX2!0.62!3.16!EMX2;;chr17:46622175..46622186,-!p12@HOXB2!0.62!3.16!HOXB2;;chr17:46692318..46692362,-!p5@HOXB8!0.62!3.16!HOXB8;;chr2:176969228..176969260,+!p1@HOXD11!0.62!3.16!HOXD11;;chr3:69915385..69915438,+!p3@MITF!0.62!3.16!MITF;;chr6:1312155..1312187,+!p2@FOXQ1!0.62!3.16!FOXQ1;;chr7:27183291..27183324,-!p1@HOXA5!0.62!3.16!HOXA5;;chr11:65667884..65667895,-!p2@FOSL1!0.61!13.99!FOSL1;;chr17:46675420..46675465,-!p3@HOXB6!0.61!3.61!HOXB6;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!31.58!PPP1R13L;;chr3:52001396..52001425,-!p4@PCBP4!0.60!5.87!PCBP4;;chr12:80084137..80084165,-!p10@PAWR!0.60!4.06!PAWR;;chr6:34204642..34204664,+!p2@HMGA1!0.59!476.02!HMGA1;;chr20:42136308..42136358,+!p2@L3MBTL1!0.59!4.06!L3MBTL;;chr3:52001448..52001478,-!p2@PCBP4!0.58!48.28!PCBP4;;chr12:80084737..80084763,-!p3@PAWR!0.58!12.63!PAWR;;chr14:21994337..21994442,-!p1@SALL2!0.58!9.02!SALL2;;chr18:74072572..74072588,-!p2@ZNF516!0.58!4.96!ZNF516;;chr1:935467..935484,-!p1@HES4!0.57!14.44!HES4;;chr7:28448965..28448994,+!p2@CREB5!0.57!11.28!CREB5;;chr20:50808667..50808729,-!p3@ZFP64!0.57!5.87!ZFP64;;chr22:30162893..30162907,-!p2@ZMAT5!0.57!3.61!ZMAT5;;chr3:69915369..69915381,+!p4@MITF!0.57!2.71!MITF;;chr17:41622982..41623001,-!p11@ETV4!0.57!2.71!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.57!2.71!ETV4;;chr17:46131916..46131952,+!p7@NFE2L1!0.57!2.71!NFE2L1;;chr17:46675539..46675551,-!p7@HOXB6!0.57!2.71!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.57!2.71!HOXB8;;chr17:46703436..46703460,-!p7@HOXB9!0.57!2.71!HOXB9;;chr12:66218420..66218439,+!p12@HMGA2!0.57!2.71!HMGA2;;chr5:3595934..3595957,+!p2@IRX1!0.57!2.71!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.57!2.71!TFAP2A;;chr7:101917407..101917443,+!p3@CUX1!0.57!2.71!CUX1;;chr8:67874805..67874831,-!p1@TCF24!0.57!2.71!TCF24;;chrY:21906594..21906622,-!p1@KDM5D!0.57!2.71!KDM5D;;chr8:128749984..128750033,+!p4@MYC!0.56!11.28!MYC;;chr19:36545291..36545314,-!p2@THAP8!0.56!7.67!THAP8;;chr19:53496768..53496799,-!p1@ZNF702P!0.56!4.51!ZNF702P;;chr19:58987711..58987729,+!p2@ZNF446!0.56!4.51!ZNF446;;chr17:40440225..40440268,+!p3@STAT5A!0.56!3.61!STAT5A;;chr3:12330560..12330579,+!p1@PPARG!0.56!3.16!PPARG;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!332.08!ZFP36L1;;chr22:42229100..42229146,+!p1@SRE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| |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.10!125.43!PAX8;;chr1:201979743..201979762,+!p1@ELF3!2.08!120.02!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.03!105.58!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!2.00!99.72!HOXB9;;chr17:36105042..36105060,-!p1@HNF1B!1.84!68.13!HNF1B;;chr1:209979467..209979494,-!p1@IRF6!1.83!74.00!IRF6;;chr17:46682321..46682362,-!p1@HOXB6!1.67!46.02!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!1.47!74.45!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.74!TFAP2A;;chr6:34204921..34204939,+!p3@HMGA1!1.39!674.09!HMGA1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.38!23.01!LHX1;;chr10:8096631..8096660,+!p1@GATA3!1.29!22.11!GATA3;;chr11:34642612..34642646,+!p1@EHF!1.28!18.05!EHF;;chr17:46622205..46622218,-!p3@HOXB2!1.27!20.30!HOXB2;;chr1:209979411..209979433,-!p2@IRF6!1.25!16.69!IRF6;;chr10:8096772..8096787,+!p2@GATA3!1.21!18.05!GATA3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.21!15.34!POU3F3;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.44!HOXD8;;chr6:34204672..34204692,+!p1@HMGA1!1.18!1564.31!HMGA1;;chr6:10415484..10415508,-!p3@TFAP2A!1.18!13.99!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!1.18!13.99!HOXA9;;chr16:86600426..86600441,+!p1@FOXC2!1.15!32.49!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.12!56.40!HMGA2;;chr21:38071430..38071456,+!p1@SIM2!1.12!12.18!SIM2;;chr7:27205106..27205134,-!p2@HOXA9!1.12!12.18!HOXA9;;chr12:66218212..66218244,+!p5@HMGA2!1.11!17.15!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!1.10!13.08!HOXB2;;chr10:102505493..102505546,+!p2@PAX2!1.10!11.73!PAX2;;chr7:27224795..27224840,-!p2@HOXA11!1.09!11.28!HOXA11;;chr1:6479968..6479986,-!p1@HES2!1.09!11.28!HES2;;chr12:66218003..66218018,+!p9@HMGA2!1.08!13.54!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!1.07!10.83!HOXB6;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.15!FOXQ1;;chr5:2751762..2751784,-!p1@IRX2!1.06!10.38!IRX2;;chr17:41623692..41623715,-!p1@ETV4!1.04!42.86!ETV4;;chr11:65554528..65554546,+!p1@OVOL1!1.04!9.93!OVOL1;;chr2:5832508..5832524,+!p1@SOX11!1.04!9.93!SOX11;;chr2:46524897..46524911,+!p2@EPAS1!1.02!26.62!EPAS1;;chr17:46622229..46622257,-!p6@HOXB2!1.01!10.83!HOXB2;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.02!NFE2L1;;chr17:70117153..70117174,+!p1@SOX9!0.99!93.40!SOX9;;chr6:10412600..10412637,-!p1@TFAP2A!0.98!14.44!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.98!13.54!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.96!13.08!ZFP64;;chr7:27192185..27192209,-!p1@HOXA3!0.96!8.12!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.96!8.12!HOXA11;;chr2:177053386..177053402,+!p1@HOXD1!0.96!8.12!HOXD1;;chr4:299227..299272,-!p1@ZNF732!0.96!8.12!ZNF732;;chr6:21593973..21593988,+!p1@SOX4!0.92!277.04!SOX4;;chr12:66218183..66218209,+!p4@HMGA2!0.92!14.44!HMGA2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.22!TFCP2L1;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.89!C11orf9;;chr12:54378923..54378966,+!p1@HOXC10!0.89!6.77!HOXC10;;chr7:27153454..27153469,-!p2@HOXA3!0.89!6.77!HOXA3;;chr13:73633131..73633149,+!p1@KLF5!0.88!74.45!KLF5;;chr20:31350184..31350200,+!p1@DNMT3B!0.87!13.99!DNMT3B;;chr1:24646002..24646013,+!p3@GRHL3!0.86!6.32!GRHL3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.86!6.32!HOXC5;;chr14:38064429..38064486,-!p1@FOXA1!0.86!6.32!FOXA1;;chr6:50786591..50786614,+!p1@TFAP2B!0.86!6.32!TFAP2B;;chr16:86600870..86600921,+!p2@FOXC2!0.86!6.32!FOXC2;;chr17:46703528..46703549,-!p5@HOXB9!0.86!6.32!HOXB9;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.02!HOXB7;;chr20:6748325..6748352,+!p1@BMP2!0.85!9.02!BMP2;;chr17:46667594..46667619,-!p1@HOXB3!0.84!5.87!HOXB3;;chr17:46692457..46692484,-!p2@HOXB8!0.84!5.87!HOXB8;;chr17:7493405..7493419,-!p1@SOX15!0.84!5.87!SOX15;;chr10:102505327..102505344,+!p1@PAX2!0.84!5.87!PAX2;;chr7:27196217..27196246,-!p2@HOXA7!0.84!5.87!HOXA7;;chr17:46622070..46622109,-!p1@HOXB2!0.83!13.54!HOXB2;;chr12:3069037..3069119,+!p2@TEAD4!0.82!20.76!TEAD4;;chr12:54447599..54447630,+!p3@HOXC4!0.81!6.77!HOXC4;;chr11:65554563..65554576,+!p2@OVOL1!0.81!5.41!OVOL1;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.41!IRX1;;chr21:38071403..38071428,+!p2@SIM2!0.81!5.41!SIM2;;chr16:51185318..51185348,-!p2@SALL1!0.81!5.41!SALL1;;chr12:66218836..66218888,+!p1@HMGA2!0.80!54.14!HMGA2;;chr2:239148671..239148686,-!p1@HES6!0.80!20.76!HES6;;chr17:46622114..46622138,-!p4@HOXB2!0.79!8.12!HOXB2;;chr11:65667846..65667868,-!p1@FOSL1!0.78!146.19!FOSL1;;chr17:46687959..46688007,-!p2@HOXB7!0.78!7.22!HOXB7;;chr17:46703826..46703845,-!p3@HOXB9!0.78!4.96!HOXB9;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.78!4.96!POU3F3;;chr2:176973498..176973524,+!p1@HOXD10!0.78!4.96!HOXD10;;chr3:111314186..111314204,-!p1@ZBED2!0.78!4.96!ZBED2;;chr5:2751785..2751808,-!p2@IRX2!0.78!4.96!IRX2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.77!14.44!ZC3H7B;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.44!PCBP4;;chr17:41622834..41622883,-!p6@ETV4!0.76!5.87!ETV4;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.37!MYBL2;;chr10:104155480..104155534,+!p2@NFKB2!0.75!32.94!NFKB2;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.22!HOXB4;;chr17:41622765..41622821,-!p2@ETV4!0.74!7.22!ETV4;;chr10:8095593..8095625,+!p3@GATA3!0.74!5.41!GATA3;;chr10:119302232..119302265,+!p1@EMX2!0.74!4.51!EMX2;;chr16:51185172..51185197,-!p1@SALL1!0.74!4.51!SALL1;;chr16:52581025..52581072,-!p1@TOX3!0.74!4.51!TOX3;;chr17:36105074..36105086,-!p2@HNF1B!0.74!4.51!HNF1B;;chr6:1610293..1610310,+!p1@FOXC1!0.73!7.67!FOXC1;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.32!TEAD2;;chr18:3450161..3450183,+!p1@TGIF1!0.72!162.43!TGIF1;;chr17:41623009..41623053,-!p4@ETV4!0.72!7.22!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.72!4.96!BNC1;;chr12:66218443..66218461,+!p8@HMGA2!0.71!5.41!HMGA2;;chr7:44143925..44143970,+!p1@AEBP1!0.70!101.97!AEBP1;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.75!SREBF2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.41!BCL3;;chr1:24645832..24645853,+!p1@GRHL3!0.70!4.06!GRHL3;;chr1:24645921..24645973,+!p2@GRHL3!0.70!4.06!GRHL3;;chr2:176972000..176972025,+!p4@HOXD11!0.70!4.06!HOXD11;;chr10:119302645..119302712,+!p3@EMX2!0.70!4.06!EMX2;;chr7:27213893..27213954,-!p1@HOXA10!0.70!4.06!HOXA10;;chr7:27219833..27219845,-!p7@HOXA10!0.70!4.06!HOXA10;;chr17:46675619..46675642,-!p5@HOXB6!0.70!4.06!HOXB6;;chr19:45504688..45504782,+!p1@RELB!0.69!27.07!RELB;;chr10:104154246..104154347,+!p3@NFKB2!0.68!26.17!NFKB2;;chr19:45252008..45252024,+!p2@BCL3!0.68!13.99!BCL3;;chr17:46621937..46621966,-!p2@HOXB2!0.68!11.28!HOXB2;;chr8:128748308..128748324,+!p2@MYC!0.67!118.21!MYC;;chr20:42295713..42295738,+!p2@MYBL2!0.67!24.82!MYBL2;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.87!ETV4;;chr11:63684602..63684664,-!p1@RCOR2!0.66!7.67!RCOR2;;chr15:80696703..80696754,+!p1@ARNT2!0.66!4.96!ARNT2;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.61!HOXB3;;chr17:46690839..46690884,-!p1@HOXB8!0.66!3.61!HOXB8;;chr5:3595977..3595999,+!p1@IRX1!0.66!3.61!IRX1;;chr6:10419824..10419840,-!p9@TFAP2A!0.66!3.61!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!0.66!3.61!TCF21;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.61!HOXA7;;chr7:27219849..27219867,-!p6@HOXA10!0.66!3.61!HOXA10;;chr2:16080659..16080685,+!p1@MYCN!0.66!3.61!MYCN;;chr2:177001290..177001315,+!p1@HOXD3!0.66!3.61!HOXD3;;chr2:5832493..5832507,+!p2@SOX11!0.66!3.61!SOX11;;chr7:26191809..26191890,+!p1@NFE2L3!0.65!19.85!NFE2L3;;chr6:21597765..21597779,+!p2@SOX4!0.64!31.58!SOX4;;chr5:76383133..76383186,-!p2@ZBED3!0.64!7.67!ZBED3;;chr19:17356436..17356481,-!p3@NR2F6!0.64!6.32!NR2F6;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.47!MLLT11;;chr6:44233252..44233296,-!p1@NFKBIE!0.63!37.90!NFKBIE;;chr19:49865646..49865718,-!p1@TEAD2!0.63!33.39!TEAD2;;chr17:7492684..7492778,-!p2@SOX15!0.63!7.67!SOX15;;chr12:80084303..80084332,-!p1@PAWR!0.62!22.11!PAWR;;chr8:60031619..60031676,-!p1@TOX!0.62!7.67!TOX;;chr1:247171347..247171366,-!p2@ZNF695!0.62!6.32!ZNF695;;chr10:119303078..119303169,+!p2@EMX2!0.62!3.16!EMX2;;chr17:46622175..46622186,-!p12@HOXB2!0.62!3.16!HOXB2;;chr17:46692318..46692362,-!p5@HOXB8!0.62!3.16!HOXB8;;chr2:176969228..176969260,+!p1@HOXD11!0.62!3.16!HOXD11;;chr3:69915385..69915438,+!p3@MITF!0.62!3.16!MITF;;chr6:1312155..1312187,+!p2@FOXQ1!0.62!3.16!FOXQ1;;chr7:27183291..27183324,-!p1@HOXA5!0.62!3.16!HOXA5;;chr11:65667884..65667895,-!p2@FOSL1!0.61!13.99!FOSL1;;chr17:46675420..46675465,-!p3@HOXB6!0.61!3.61!HOXB6;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!31.58!PPP1R13L;;chr3:52001396..52001425,-!p4@PCBP4!0.60!5.87!PCBP4;;chr12:80084137..80084165,-!p10@PAWR!0.60!4.06!PAWR;;chr6:34204642..34204664,+!p2@HMGA1!0.59!476.02!HMGA1;;chr20:42136308..42136358,+!p2@L3MBTL1!0.59!4.06!L3MBTL;;chr3:52001448..52001478,-!p2@PCBP4!0.58!48.28!PCBP4;;chr12:80084737..80084763,-!p3@PAWR!0.58!12.63!PAWR;;chr14:21994337..21994442,-!p1@SALL2!0.58!9.02!SALL2;;chr18:74072572..74072588,-!p2@ZNF516!0.58!4.96!ZNF516;;chr1:935467..935484,-!p1@HES4!0.57!14.44!HES4;;chr7:28448965..28448994,+!p2@CREB5!0.57!11.28!CREB5;;chr20:50808667..50808729,-!p3@ZFP64!0.57!5.87!ZFP64;;chr22:30162893..30162907,-!p2@ZMAT5!0.57!3.61!ZMAT5;;chr3:69915369..69915381,+!p4@MITF!0.57!2.71!MITF;;chr17:41622982..41623001,-!p11@ETV4!0.57!2.71!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.57!2.71!ETV4;;chr17:46131916..46131952,+!p7@NFE2L1!0.57!2.71!NFE2L1;;chr17:46675539..46675551,-!p7@HOXB6!0.57!2.71!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.57!2.71!HOXB8;;chr17:46703436..46703460,-!p7@HOXB9!0.57!2.71!HOXB9;;chr12:66218420..66218439,+!p12@HMGA2!0.57!2.71!HMGA2;;chr5:3595934..3595957,+!p2@IRX1!0.57!2.71!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.57!2.71!TFAP2A;;chr7:101917407..101917443,+!p3@CUX1!0.57!2.71!CUX1;;chr8:67874805..67874831,-!p1@TCF24!0.57!2.71!TCF24;;chrY:21906594..21906622,-!p1@KDM5D!0.57!2.71!KDM5D;;chr8:128749984..128750033,+!p4@MYC!0.56!11.28!MYC;;chr19:36545291..36545314,-!p2@THAP8!0.56!7.67!THAP8;;chr19:53496768..53496799,-!p1@ZNF702P!0.56!4.51!ZNF702P;;chr19:58987711..58987729,+!p2@ZNF446!0.56!4.51!ZNF446;;chr17:40440225..40440268,+!p3@STAT5A!0.56!3.61!STAT5A;;chr3:12330560..12330579,+!p1@PPARG!0.56!3.16!PPARG;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!332.08!ZFP36L1;;chr22:42229100..42229146,+!p1@SRE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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11516-119H4 | |id=FF:11516-119H4 | ||
|is_a=EFO:0002091;;FF:0000152 | |is_a=EFO:0002091;;FF:0000152 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11331 | |||
|library_id_phase_based=2:CNhs11331 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11516 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GATCAG.11516 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11516 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GATCAG.11516 | |||
|name=Renal Cortical Epithelial Cells, donor1 | |name=Renal Cortical Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11331,LSID768,release014,COMPLETED | |profile_hcage=CNhs11331,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.00140912378605804,0.279301660537643,0.00446836233155246,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.161727153872444,0,-0.0475827203568788,0,0,0,0,0,0,0,0,0.363524511538169,0,0,0,0,0,0.0402179320231695,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0298811482800081,0.0897307164136921,0,0,0,0.0432737558014258,0.0451446663339164,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0.080863576936222,0,0,0,0,0,0,0,0,0,0,0,0.0894926266277285,0.161727153872444,0,0,-0.0549201943193819,-0.054637459809206,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4115 | |rna_catalog_number=SC4115 | ||
| Line 57: | Line 81: | ||
|rna_tube_id=119H4 | |rna_tube_id=119H4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.GATCAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:0787 | |sample_cell_catalog=lot:0787 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 105: | ||
|top_motifs=XCPE1{core}:2.05747226137;ZEB1:1.95512620104;MYOD1:1.78303980301;SNAI1..3:1.76024385102;ZNF148:1.51283291733;SP1:1.51125000144;ZNF423:1.43846541217;LHX3,4:1.34461387577;TFCP2:1.31239826431;VSX1,2:1.30251295176;PBX1:1.2980213164;LMO2:1.13991703803;RXRA_VDR{dimer}:1.11620119185;PPARG:1.05940985081;LEF1_TCF7_TCF7L1,2:1.05134188753;GTF2A1,2:1.04331731143;EBF1:1.02583223012;HNF1A:1.01441474706;POU2F1..3:1.00816589948;bHLH_family:0.984761868075;TFAP2{A,C}:0.981922772678;NKX2-3_NKX2-5:0.948115083039;HOX{A5,B5}:0.892949882071;ZIC1..3:0.850332676785;GZF1:0.847953387359;TP53:0.843479296314;RREB1:0.823394130302;ADNP_IRX_SIX_ZHX:0.775229552294;SOX2:0.771214704779;GLI1..3:0.736717939199;TBX4,5:0.733687887062;MTF1:0.674404622159;TEAD1:0.668285656409;ESRRA:0.663580410302;STAT5{A,B}:0.657662229631;NR3C1:0.638146239919;JUN:0.637279820866;HIC1:0.636937758943;TFAP2B:0.632960454198;FOXQ1:0.603412191968;TBP:0.590035029633;GFI1:0.588650378022;HAND1,2:0.561314610194;ONECUT1,2:0.553468775388;SPZ1:0.545219381628;FOSL2:0.502606850719;NR1H4:0.450683816931;ESR1:0.43458277615;NFY{A,B,C}:0.430612907779;NR6A1:0.399211395082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.378711366215;GFI1B:0.363074795771;PAX1,9:0.33398180275;PAX5:0.329924528223;FOS_FOS{B,L1}_JUN{B,D}:0.329819063016;POU5F1:0.326234196689;TLX1..3_NFIC{dimer}:0.303624148078;MAZ:0.26427071207;RORA:0.240374292539;TFAP4:0.212250809808;TEF:0.212112108376;SOX{8,9,10}:0.212079522587;NFKB1_REL_RELA:0.211278776276;PAX8:0.196746969754;NR5A1,2:0.187343839993;POU3F1..4:0.181230480248;BACH2:0.163333005423;GTF2I:0.153546358871;CRX:0.143949027709;ZBTB6:0.131866335008;EP300:0.12117390169;TFDP1:0.0939855674523;REST:0.0674083293112;HNF4A_NR2F1,2:0.0597463133821;T:0.0544103297912;POU1F1:0.0476592698096;SOX17:0.0388893536384;AR:0.0299552088639;IKZF1:0.0271759883355;NFE2L2:0.0110858464345;FOX{F1,F2,J1}:0.00731753099731;MEF2{A,B,C,D}:-0.00150600760476;NFE2:-0.0046907088222;STAT2,4,6:-0.0137567492015;RXR{A,B,G}:-0.0366573134712;GCM1,2:-0.0387176393756;PRRX1,2:-0.0415713563127;FOXM1:-0.0589695056579;NANOG:-0.0767890609723;SRF:-0.0932427447405;PATZ1:-0.0950428905318;CEBPA,B_DDIT3:-0.0998751808149;E2F1..5:-0.101375265703;OCT4_SOX2{dimer}:-0.115654974709;ZFP161:-0.118122162095;HLF:-0.121042164473;MTE{core}:-0.139187734511;KLF4:-0.150059458751;MED-1{core}:-0.172946101861;TAL1_TCF{3,4,12}:-0.181101409734;NFE2L1:-0.190522334098;ETS1,2:-0.229153012034;RFX1:-0.258507584587;ZNF143:-0.266738306121;GATA6:-0.285246782406;ARID5B:-0.288703382762;MYB:-0.304932280069;NHLH1,2:-0.315010184583;MYBL2:-0.332267923996;PDX1:-0.3573594364;EN1,2:-0.358402256489;XBP1:-0.376132883214;SREBF1,2:-0.377378175224;CUX2:-0.387359545653;ATF2:-0.388121191241;RUNX1..3:-0.393297198201;SMAD1..7,9:-0.401795582288;HMX1:-0.422180159316;HOX{A6,A7,B6,B7}:-0.425065621255;NKX3-1:-0.446514175486;SPIB:-0.46588143882;HES1:-0.484591110727;NKX6-1,2:-0.485557761693;EGR1..3:-0.491648137572;ALX1:-0.498908330171;ZNF384:-0.508402051918;TOPORS:-0.512017922262;FOXL1:-0.522953073294;MZF1:-0.535782160913;UFEwm:-0.548856972792;ATF4:-0.564334158702;IRF7:-0.575562697272;ATF6:-0.584898450184;PRDM1:-0.594298727772;RFX2..5_RFXANK_RFXAP:-0.594370983141;NFIL3:-0.596394449262;DBP:-0.608703909268;FOXA2:-0.623976687121;ZNF238:-0.628707654115;SOX5:-0.631962521506;SPI1:-0.637443103637;CDC5L:-0.640358129325;PITX1..3:-0.646425955382;HBP1_HMGB_SSRP1_UBTF:-0.649858435378;BREu{core}:-0.652045383767;NFATC1..3:-0.695892070161;FOX{D1,D2}:-0.70980890022;ALX4:-0.734508270776;NRF1:-0.748662404067;POU6F1:-0.768439677281;EVI1:-0.787859306462;NKX3-2:-0.789903107255;HOX{A4,D4}:-0.799951747783;TLX2:-0.808530103218;PAX2:-0.812693816882;FOXD3:-0.841782464666;CDX1,2,4:-0.842463921506;ATF5_CREB3:-0.885074925171;PAX6:-0.911019930069;IRF1,2:-0.95093687373;MYFfamily:-0.957787009967;FOXP1:-0.986136578595;ELK1,4_GABP{A,B1}:-0.986498873368;NKX2-2,8:-0.990806157035;YY1:-0.99642863608;HIF1A:-0.998367876091;PAX4:-1.06812186155;CREB1:-1.09347692154;STAT1,3:-1.10241747221;IKZF2:-1.11246307306;FOX{I1,J2}:-1.11757826089;AHR_ARNT_ARNT2:-1.12723082578;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16064704733;NANOG{mouse}:-1.18166158539;ELF1,2,4:-1.18746235852;PAX3,7:-1.19534740703;NKX2-1,4:-1.19735338828;MAFB:-1.20554111512;FOXO1,3,4:-1.20802124726;TGIF1:-1.22772278315;FOXP3:-1.23321003153;DMAP1_NCOR{1,2}_SMARC:-1.26715776784;HOXA9_MEIS1:-1.27501399475;AIRE:-1.30251423885;BPTF:-1.33513371825;HSF1,2:-1.33837151852;RBPJ:-1.35126165074;FOXN1:-1.37116456707;NFIX:-1.37436692614;HMGA1,2:-1.395141787;ZBTB16:-1.43169930389;GATA4:-1.68961348402 | |top_motifs=XCPE1{core}:2.05747226137;ZEB1:1.95512620104;MYOD1:1.78303980301;SNAI1..3:1.76024385102;ZNF148:1.51283291733;SP1:1.51125000144;ZNF423:1.43846541217;LHX3,4:1.34461387577;TFCP2:1.31239826431;VSX1,2:1.30251295176;PBX1:1.2980213164;LMO2:1.13991703803;RXRA_VDR{dimer}:1.11620119185;PPARG:1.05940985081;LEF1_TCF7_TCF7L1,2:1.05134188753;GTF2A1,2:1.04331731143;EBF1:1.02583223012;HNF1A:1.01441474706;POU2F1..3:1.00816589948;bHLH_family:0.984761868075;TFAP2{A,C}:0.981922772678;NKX2-3_NKX2-5:0.948115083039;HOX{A5,B5}:0.892949882071;ZIC1..3:0.850332676785;GZF1:0.847953387359;TP53:0.843479296314;RREB1:0.823394130302;ADNP_IRX_SIX_ZHX:0.775229552294;SOX2:0.771214704779;GLI1..3:0.736717939199;TBX4,5:0.733687887062;MTF1:0.674404622159;TEAD1:0.668285656409;ESRRA:0.663580410302;STAT5{A,B}:0.657662229631;NR3C1:0.638146239919;JUN:0.637279820866;HIC1:0.636937758943;TFAP2B:0.632960454198;FOXQ1:0.603412191968;TBP:0.590035029633;GFI1:0.588650378022;HAND1,2:0.561314610194;ONECUT1,2:0.553468775388;SPZ1:0.545219381628;FOSL2:0.502606850719;NR1H4:0.450683816931;ESR1:0.43458277615;NFY{A,B,C}:0.430612907779;NR6A1:0.399211395082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.378711366215;GFI1B:0.363074795771;PAX1,9:0.33398180275;PAX5:0.329924528223;FOS_FOS{B,L1}_JUN{B,D}:0.329819063016;POU5F1:0.326234196689;TLX1..3_NFIC{dimer}:0.303624148078;MAZ:0.26427071207;RORA:0.240374292539;TFAP4:0.212250809808;TEF:0.212112108376;SOX{8,9,10}:0.212079522587;NFKB1_REL_RELA:0.211278776276;PAX8:0.196746969754;NR5A1,2:0.187343839993;POU3F1..4:0.181230480248;BACH2:0.163333005423;GTF2I:0.153546358871;CRX:0.143949027709;ZBTB6:0.131866335008;EP300:0.12117390169;TFDP1:0.0939855674523;REST:0.0674083293112;HNF4A_NR2F1,2:0.0597463133821;T:0.0544103297912;POU1F1:0.0476592698096;SOX17:0.0388893536384;AR:0.0299552088639;IKZF1:0.0271759883355;NFE2L2:0.0110858464345;FOX{F1,F2,J1}:0.00731753099731;MEF2{A,B,C,D}:-0.00150600760476;NFE2:-0.0046907088222;STAT2,4,6:-0.0137567492015;RXR{A,B,G}:-0.0366573134712;GCM1,2:-0.0387176393756;PRRX1,2:-0.0415713563127;FOXM1:-0.0589695056579;NANOG:-0.0767890609723;SRF:-0.0932427447405;PATZ1:-0.0950428905318;CEBPA,B_DDIT3:-0.0998751808149;E2F1..5:-0.101375265703;OCT4_SOX2{dimer}:-0.115654974709;ZFP161:-0.118122162095;HLF:-0.121042164473;MTE{core}:-0.139187734511;KLF4:-0.150059458751;MED-1{core}:-0.172946101861;TAL1_TCF{3,4,12}:-0.181101409734;NFE2L1:-0.190522334098;ETS1,2:-0.229153012034;RFX1:-0.258507584587;ZNF143:-0.266738306121;GATA6:-0.285246782406;ARID5B:-0.288703382762;MYB:-0.304932280069;NHLH1,2:-0.315010184583;MYBL2:-0.332267923996;PDX1:-0.3573594364;EN1,2:-0.358402256489;XBP1:-0.376132883214;SREBF1,2:-0.377378175224;CUX2:-0.387359545653;ATF2:-0.388121191241;RUNX1..3:-0.393297198201;SMAD1..7,9:-0.401795582288;HMX1:-0.422180159316;HOX{A6,A7,B6,B7}:-0.425065621255;NKX3-1:-0.446514175486;SPIB:-0.46588143882;HES1:-0.484591110727;NKX6-1,2:-0.485557761693;EGR1..3:-0.491648137572;ALX1:-0.498908330171;ZNF384:-0.508402051918;TOPORS:-0.512017922262;FOXL1:-0.522953073294;MZF1:-0.535782160913;UFEwm:-0.548856972792;ATF4:-0.564334158702;IRF7:-0.575562697272;ATF6:-0.584898450184;PRDM1:-0.594298727772;RFX2..5_RFXANK_RFXAP:-0.594370983141;NFIL3:-0.596394449262;DBP:-0.608703909268;FOXA2:-0.623976687121;ZNF238:-0.628707654115;SOX5:-0.631962521506;SPI1:-0.637443103637;CDC5L:-0.640358129325;PITX1..3:-0.646425955382;HBP1_HMGB_SSRP1_UBTF:-0.649858435378;BREu{core}:-0.652045383767;NFATC1..3:-0.695892070161;FOX{D1,D2}:-0.70980890022;ALX4:-0.734508270776;NRF1:-0.748662404067;POU6F1:-0.768439677281;EVI1:-0.787859306462;NKX3-2:-0.789903107255;HOX{A4,D4}:-0.799951747783;TLX2:-0.808530103218;PAX2:-0.812693816882;FOXD3:-0.841782464666;CDX1,2,4:-0.842463921506;ATF5_CREB3:-0.885074925171;PAX6:-0.911019930069;IRF1,2:-0.95093687373;MYFfamily:-0.957787009967;FOXP1:-0.986136578595;ELK1,4_GABP{A,B1}:-0.986498873368;NKX2-2,8:-0.990806157035;YY1:-0.99642863608;HIF1A:-0.998367876091;PAX4:-1.06812186155;CREB1:-1.09347692154;STAT1,3:-1.10241747221;IKZF2:-1.11246307306;FOX{I1,J2}:-1.11757826089;AHR_ARNT_ARNT2:-1.12723082578;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16064704733;NANOG{mouse}:-1.18166158539;ELF1,2,4:-1.18746235852;PAX3,7:-1.19534740703;NKX2-1,4:-1.19735338828;MAFB:-1.20554111512;FOXO1,3,4:-1.20802124726;TGIF1:-1.22772278315;FOXP3:-1.23321003153;DMAP1_NCOR{1,2}_SMARC:-1.26715776784;HOXA9_MEIS1:-1.27501399475;AIRE:-1.30251423885;BPTF:-1.33513371825;HSF1,2:-1.33837151852;RBPJ:-1.35126165074;FOXN1:-1.37116456707;NFIX:-1.37436692614;HMGA1,2:-1.395141787;ZBTB16:-1.43169930389;GATA4:-1.68961348402 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11516-119H4;search_select_hide=table117:FF:11516-119H4 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Renal Cortical Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11331 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11331
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11331
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.587 |
| 10 | 10 | 0.0666 |
| 100 | 100 | 0.813 |
| 101 | 101 | 0.0554 |
| 102 | 102 | 0.493 |
| 103 | 103 | 0.468 |
| 104 | 104 | 0.58 |
| 105 | 105 | 0.0708 |
| 106 | 106 | 0.0829 |
| 107 | 107 | 0.0148 |
| 108 | 108 | 0.493 |
| 109 | 109 | 0.217 |
| 11 | 11 | 0.663 |
| 110 | 110 | 0.681 |
| 111 | 111 | 0.993 |
| 112 | 112 | 0.808 |
| 113 | 113 | 0.442 |
| 114 | 114 | 0.095 |
| 115 | 115 | 0.958 |
| 116 | 116 | 0.846 |
| 117 | 117 | 0.427 |
| 118 | 118 | 0.988 |
| 119 | 119 | 0.168 |
| 12 | 12 | 0.76 |
| 120 | 120 | 0.541 |
| 121 | 121 | 0.959 |
| 122 | 122 | 0.155 |
| 123 | 123 | 0.0841 |
| 124 | 124 | 0.241 |
| 125 | 125 | 0.419 |
| 126 | 126 | 0.275 |
| 127 | 127 | 0.279 |
| 128 | 128 | 0.196 |
| 129 | 129 | 0.0194 |
| 13 | 13 | 0.381 |
| 130 | 130 | 0.492 |
| 131 | 131 | 0.423 |
| 132 | 132 | 0.18 |
| 133 | 133 | 0.147 |
| 134 | 134 | 0.668 |
| 135 | 135 | 0.788 |
| 136 | 136 | 0.757 |
| 137 | 137 | 0.0402 |
| 138 | 138 | 0.278 |
| 139 | 139 | 0.104 |
| 14 | 14 | 0.517 |
| 140 | 140 | 0.284 |
| 141 | 141 | 0.53 |
| 142 | 142 | 0.787 |
| 143 | 143 | 0.886 |
| 144 | 144 | 0.471 |
| 145 | 145 | 0.202 |
| 146 | 146 | 0.0191 |
| 147 | 147 | 0.582 |
| 148 | 148 | 0.0991 |
| 149 | 149 | 0.191 |
| 15 | 15 | 0.965 |
| 150 | 150 | 0.448 |
| 151 | 151 | 0.623 |
| 152 | 152 | 0.0488 |
| 153 | 153 | 0.202 |
| 154 | 154 | 0.165 |
| 155 | 155 | 0.945 |
| 156 | 156 | 0.0552 |
| 157 | 157 | 0.253 |
| 158 | 158 | 0.929 |
| 159 | 159 | 0.787 |
| 16 | 16 | 0.415 |
| 160 | 160 | 0.124 |
| 161 | 161 | 0.802 |
| 162 | 162 | 0.156 |
| 163 | 163 | 0.787 |
| 164 | 164 | 0.205 |
| 165 | 165 | 0.235 |
| 166 | 166 | 0.567 |
| 167 | 167 | 0.122 |
| 168 | 168 | 0.93 |
| 169 | 169 | 0.242 |
| 17 | 17 | 0.288 |
| 18 | 18 | 0.454 |
| 19 | 19 | 0.669 |
| 2 | 2 | 0.207 |
| 20 | 20 | 0.816 |
| 21 | 21 | 0.779 |
| 22 | 22 | 0.295 |
| 23 | 23 | 0.219 |
| 24 | 24 | 0.968 |
| 25 | 25 | 0.614 |
| 26 | 26 | 0.389 |
| 27 | 27 | 0.303 |
| 28 | 28 | 0.614 |
| 29 | 29 | 0.601 |
| 3 | 3 | 0.462 |
| 30 | 30 | 0.0338 |
| 31 | 31 | 0.431 |
| 32 | 32 | 0.495 |
| 33 | 33 | 0.214 |
| 34 | 34 | 0.233 |
| 35 | 35 | 0.161 |
| 36 | 36 | 0.902 |
| 37 | 37 | 0.671 |
| 38 | 38 | 0.399 |
| 39 | 39 | 0.205 |
| 4 | 4 | 0.124 |
| 40 | 40 | 0.00778 |
| 41 | 41 | 0.505 |
| 42 | 42 | 0.579 |
| 43 | 43 | 0.834 |
| 44 | 44 | 0.868 |
| 45 | 45 | 0.0817 |
| 46 | 46 | 0.675 |
| 47 | 47 | 0.977 |
| 48 | 48 | 0.779 |
| 49 | 49 | 0.984 |
| 5 | 5 | 0.521 |
| 50 | 50 | 0.243 |
| 51 | 51 | 0.491 |
| 52 | 52 | 0.316 |
| 53 | 53 | 0.569 |
| 54 | 54 | 0.417 |
| 55 | 55 | 0.134 |
| 56 | 56 | 0.313 |
| 57 | 57 | 0.94 |
| 58 | 58 | 0.395 |
| 59 | 59 | 0.114 |
| 6 | 6 | 0.218 |
| 60 | 60 | 0.403 |
| 61 | 61 | 0.366 |
| 62 | 62 | 0.247 |
| 63 | 63 | 0.301 |
| 64 | 64 | 0.549 |
| 65 | 65 | 0.0808 |
| 66 | 66 | 0.108 |
| 67 | 67 | 0.261 |
| 68 | 68 | 0.849 |
| 69 | 69 | 0.0428 |
| 7 | 7 | 0.984 |
| 70 | 70 | 0.958 |
| 71 | 71 | 0.249 |
| 72 | 72 | 0.809 |
| 73 | 73 | 0.0753 |
| 74 | 74 | 0.171 |
| 75 | 75 | 0.686 |
| 76 | 76 | 0.0708 |
| 77 | 77 | 0.00643 |
| 78 | 78 | 0.735 |
| 79 | 79 | 0.426 |
| 8 | 8 | 0.627 |
| 80 | 80 | 0.747 |
| 81 | 81 | 0.144 |
| 82 | 82 | 0.373 |
| 83 | 83 | 0.948 |
| 84 | 84 | 0.768 |
| 85 | 85 | 0.851 |
| 86 | 86 | 0.577 |
| 87 | 87 | 0.187 |
| 88 | 88 | 0.552 |
| 89 | 89 | 0.264 |
| 9 | 9 | 0.594 |
| 90 | 90 | 0.0315 |
| 91 | 91 | 0.895 |
| 92 | 92 | 0.707 |
| 93 | 93 | 0.253 |
| 94 | 94 | 0.677 |
| 95 | 95 | 0.63 |
| 96 | 96 | 0.795 |
| 97 | 97 | 0.691 |
| 98 | 98 | 0.783 |
| 99 | 99 | 0.0186 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11331
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000152 human renal cortical epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000152 (human renal cortical epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
