FF:11396-118D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004795 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004795 | ||
|accession_numbers=CAGE;DRX008485;DRR009357;DRZ000782;DRZ002167;DRZ012132;DRZ013517 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037076;DRR041442;DRZ007084 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0000059,UBERON:0002204,UBERON:0005409,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002504,CL:1000279,CL:1000280 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000180,FF:0000181 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor3.CNhs12007.11396-118D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor3.CNhs12007.11396-118D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor3.CNhs12007.11396-118D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor3.CNhs12007.11396-118D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor3.CNhs12007.11396-118D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11396-118D1 | |id=FF:11396-118D1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000181 | ||
|is_obsolete= | |||
|library_id=CNhs12007 | |||
|library_id_phase_based=2:CNhs12007 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11396 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.TAGCTT.11396 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11396 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.TAGCTT.11396 | |||
|name=Smooth Muscle Cells - Colonic, donor3 | |name=Smooth Muscle Cells - Colonic, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12007,LSID837,release011,COMPLETED | |profile_hcage=CNhs12007,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC2945 | |rna_catalog_number=SC2945 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118D1 | |rna_tube_id=118D1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.TAGCTT | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.63081029982322e-247!GO:0005737;cytoplasm;8.40918744370436e-206!GO:0043226;organelle;1.75960710776993e-192!GO:0043231;intracellular membrane-bound organelle;3.01078007561825e-192!GO:0043229;intracellular organelle;3.01078007561825e-192!GO:0043227;membrane-bound organelle;6.47708411430303e-192!GO:0044422;organelle part;1.57812661322274e-150!GO:0044444;cytoplasmic part;4.58013400992812e-149!GO:0044446;intracellular organelle part;4.69590266865371e-149!GO:0032991;macromolecular complex;4.29307872109308e-99!GO:0044238;primary metabolic process;3.45158666691777e-90!GO:0044237;cellular metabolic process;4.30796419506816e-90!GO:0030529;ribonucleoprotein complex;1.9819854218953e-89!GO:0043170;macromolecule metabolic process;6.95037888821111e-79!GO:0005515;protein binding;5.89630982863903e-77!GO:0005739;mitochondrion;3.22703209556356e-75!GO:0043233;organelle lumen;4.57599490132708e-74!GO:0031974;membrane-enclosed lumen;4.57599490132708e-74!GO:0044428;nuclear part;1.07376338154707e-71!GO:0005634;nucleus;4.37706553084323e-68!GO:0003723;RNA binding;1.75058279878601e-66!GO:0005840;ribosome;4.41045984738283e-56!GO:0031090;organelle membrane;1.21556745949471e-55!GO:0019538;protein metabolic process;1.99714174081143e-53!GO:0016043;cellular component organization and biogenesis;3.32360968395046e-52!GO:0006412;translation;2.55831893587861e-51!GO:0044429;mitochondrial part;1.30491385407061e-49!GO:0003735;structural constituent of ribosome;7.73030360795655e-49!GO:0043234;protein complex;9.74222573028622e-49!GO:0044260;cellular macromolecule metabolic process;9.12385930083243e-48!GO:0009058;biosynthetic process;1.14023170925373e-47!GO:0044267;cellular protein metabolic process;7.37741459666724e-47!GO:0006396;RNA processing;1.07744768512303e-46!GO:0031967;organelle envelope;4.35860645262252e-46!GO:0031975;envelope;9.50186663250571e-46!GO:0015031;protein transport;4.21824925440662e-44!GO:0033036;macromolecule localization;3.04772763807278e-43!GO:0044249;cellular biosynthetic process;3.21980192097702e-43!GO:0033279;ribosomal subunit;9.01164036891715e-42!GO:0031981;nuclear lumen;1.67588387773141e-41!GO:0045184;establishment of protein localization;2.11022331330834e-40!GO:0009059;macromolecule biosynthetic process;3.11552908324254e-40!GO:0008104;protein localization;4.51261643486505e-40!GO:0005829;cytosol;7.41343388461711e-40!GO:0043283;biopolymer metabolic process;1.05941929571077e-39!GO:0046907;intracellular transport;2.81067662723765e-36!GO:0016071;mRNA metabolic process;2.84192693652785e-36!GO:0065003;macromolecular complex assembly;1.20097675785035e-34!GO:0010467;gene expression;1.39199320421089e-34!GO:0006996;organelle organization and biogenesis;1.90437865137596e-34!GO:0008380;RNA splicing;5.5689667317511e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.99851556610979e-34!GO:0043228;non-membrane-bound organelle;3.70413035193169e-33!GO:0043232;intracellular non-membrane-bound organelle;3.70413035193169e-33!GO:0005740;mitochondrial envelope;4.91136830044132e-32!GO:0006397;mRNA processing;3.42899433481946e-31!GO:0022607;cellular component assembly;3.74212122801331e-31!GO:0031966;mitochondrial membrane;3.66620407684066e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.03796751680736e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.76161037962444e-30!GO:0019866;organelle inner membrane;1.12487846790817e-29!GO:0006886;intracellular protein transport;1.67081983737209e-29!GO:0005743;mitochondrial inner membrane;1.06054540929141e-27!GO:0006259;DNA metabolic process;2.98935363253479e-27!GO:0005654;nucleoplasm;2.23093313616645e-25!GO:0007049;cell cycle;1.06002705899292e-24!GO:0012505;endomembrane system;2.6339475462026e-24!GO:0005681;spliceosome;6.71514547604472e-24!GO:0044445;cytosolic part;1.19962152301916e-23!GO:0051649;establishment of cellular localization;1.41029538300305e-23!GO:0051641;cellular localization;2.63876405999496e-23!GO:0005783;endoplasmic reticulum;3.45483784790126e-23!GO:0006119;oxidative phosphorylation;4.49092179682359e-23!GO:0000166;nucleotide binding;7.3850378316868e-23!GO:0015934;large ribosomal subunit;2.21243921074114e-22!GO:0031980;mitochondrial lumen;1.1437873161657e-21!GO:0005759;mitochondrial matrix;1.1437873161657e-21!GO:0044455;mitochondrial membrane part;3.40723003289357e-21!GO:0006457;protein folding;5.38813873409796e-21!GO:0015935;small ribosomal subunit;1.74023903658695e-20!GO:0044451;nucleoplasm part;2.82939942136221e-20!GO:0048770;pigment granule;6.93963826591802e-20!GO:0042470;melanosome;6.93963826591802e-20!GO:0016462;pyrophosphatase activity;4.95717130115919e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.86592408242521e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;9.68306446186388e-19!GO:0022402;cell cycle process;1.62740657933889e-18!GO:0044432;endoplasmic reticulum part;2.22564852206859e-18!GO:0005746;mitochondrial respiratory chain;2.5773591767361e-18!GO:0017111;nucleoside-triphosphatase activity;3.05559515849325e-18!GO:0000278;mitotic cell cycle;7.08258387642704e-18!GO:0003676;nucleic acid binding;1.05897262562006e-17!GO:0051186;cofactor metabolic process;1.55479622237626e-17!GO:0022618;protein-RNA complex assembly;2.38736955768074e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.21800947601882e-17!GO:0005794;Golgi apparatus;8.67987281405824e-17!GO:0005730;nucleolus;1.2204517157895e-16!GO:0005761;mitochondrial ribosome;2.796516210369e-16!GO:0000313;organellar ribosome;2.796516210369e-16!GO:0043285;biopolymer catabolic process;3.81384277680356e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.98996685104558e-16!GO:0016874;ligase activity;5.66014628017612e-16!GO:0006974;response to DNA damage stimulus;5.91227450015587e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.16997564848783e-16!GO:0003954;NADH dehydrogenase activity;6.16997564848783e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.16997564848783e-16!GO:0032553;ribonucleotide binding;7.45707883523599e-16!GO:0032555;purine ribonucleotide binding;7.45707883523599e-16!GO:0044265;cellular macromolecule catabolic process;1.07285212460701e-15!GO:0017076;purine nucleotide binding;1.1694474158785e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.23339326122602e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.67862479419649e-15!GO:0044248;cellular catabolic process;1.82463112968733e-15!GO:0019941;modification-dependent protein catabolic process;2.34630443695103e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.34630443695103e-15!GO:0008135;translation factor activity, nucleic acid binding;2.92600594071679e-15!GO:0044257;cellular protein catabolic process;3.12440307716349e-15!GO:0006605;protein targeting;3.40999516455746e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.82955947509979e-15!GO:0009057;macromolecule catabolic process;7.1750172619161e-15!GO:0005635;nuclear envelope;7.55139732772162e-15!GO:0030163;protein catabolic process;7.57085635385842e-15!GO:0006512;ubiquitin cycle;8.17668174655751e-15!GO:0048193;Golgi vesicle transport;8.73829145470914e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.11447630649072e-14!GO:0005694;chromosome;3.12956339581715e-14!GO:0051082;unfolded protein binding;4.12743408836196e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.80542471370582e-14!GO:0042773;ATP synthesis coupled electron transport;4.80542471370582e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.88248706351208e-14!GO:0045271;respiratory chain complex I;5.88248706351208e-14!GO:0005747;mitochondrial respiratory chain complex I;5.88248706351208e-14!GO:0006732;coenzyme metabolic process;6.38028377815069e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.68738340395749e-14!GO:0008134;transcription factor binding;1.18389733266942e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.84620619669042e-13!GO:0022403;cell cycle phase;2.11810490349273e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.26871454223642e-13!GO:0042254;ribosome biogenesis and assembly;2.54701071156144e-13!GO:0044427;chromosomal part;3.09191530898347e-13!GO:0000087;M phase of mitotic cell cycle;4.5363111243507e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.75502997178599e-13!GO:0000375;RNA splicing, via transesterification reactions;4.75502997178599e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.75502997178599e-13!GO:0016192;vesicle-mediated transport;5.5103719315584e-13!GO:0005524;ATP binding;5.60029404249117e-13!GO:0051301;cell division;5.99717929695437e-13!GO:0031965;nuclear membrane;6.2280013981624e-13!GO:0007067;mitosis;6.43582952352891e-13!GO:0005789;endoplasmic reticulum membrane;6.92807053473864e-13!GO:0032559;adenyl ribonucleotide binding;7.08000934800725e-13!GO:0016070;RNA metabolic process;9.0687870780651e-13!GO:0009055;electron carrier activity;1.16871462844229e-12!GO:0030554;adenyl nucleotide binding;1.52904259519886e-12!GO:0043412;biopolymer modification;2.02563490673933e-12!GO:0006281;DNA repair;2.10943024910097e-12!GO:0005793;ER-Golgi intermediate compartment;2.2316885779061e-12!GO:0003743;translation initiation factor activity;3.82608452194644e-12!GO:0009719;response to endogenous stimulus;4.18721165403615e-12!GO:0051276;chromosome organization and biogenesis;5.3592373172517e-12!GO:0044453;nuclear membrane part;1.28188329817512e-11!GO:0006464;protein modification process;3.7602168594514e-11!GO:0009259;ribonucleotide metabolic process;4.30954412900803e-11!GO:0006260;DNA replication;5.70527153316769e-11!GO:0006413;translational initiation;5.79415286458639e-11!GO:0016604;nuclear body;6.73892291415096e-11!GO:0006163;purine nucleotide metabolic process;7.69024770774152e-11!GO:0006913;nucleocytoplasmic transport;8.19697092378312e-11!GO:0000074;regulation of progression through cell cycle;1.33483552459502e-10!GO:0012501;programmed cell death;1.49202971486739e-10!GO:0051726;regulation of cell cycle;1.5802047418605e-10!GO:0051169;nuclear transport;2.0376859358045e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.07790433554204e-10!GO:0000279;M phase;2.08654657496132e-10!GO:0006461;protein complex assembly;2.1919709272763e-10!GO:0006915;apoptosis;2.5854701436648e-10!GO:0006446;regulation of translational initiation;2.68769533052555e-10!GO:0009150;purine ribonucleotide metabolic process;2.89432954598874e-10!GO:0065004;protein-DNA complex assembly;3.88161718206484e-10!GO:0008565;protein transporter activity;3.91248214834418e-10!GO:0006164;purine nucleotide biosynthetic process;5.0326361607534e-10!GO:0006399;tRNA metabolic process;6.09173778861727e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.127018329084e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.31687924769762e-10!GO:0006323;DNA packaging;7.26519987738832e-10!GO:0009260;ribonucleotide biosynthetic process;8.7008832906696e-10!GO:0043687;post-translational protein modification;9.19034212323364e-10!GO:0009056;catabolic process;9.75688566816606e-10!GO:0009060;aerobic respiration;1.18241031122416e-09!GO:0008219;cell death;1.61307913307904e-09!GO:0016265;death;1.61307913307904e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.85911051803511e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.92090235254845e-09!GO:0009141;nucleoside triphosphate metabolic process;2.29571445928464e-09!GO:0045333;cellular respiration;2.99420439322358e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.48675734195684e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.49017166935564e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.49017166935564e-09!GO:0065002;intracellular protein transport across a membrane;4.42669842860937e-09!GO:0005643;nuclear pore;4.57124830941834e-09!GO:0003712;transcription cofactor activity;4.68703184730327e-09!GO:0017038;protein import;5.24462769019732e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.42621983125475e-09!GO:0042623;ATPase activity, coupled;6.58717274101535e-09!GO:0016491;oxidoreductase activity;6.7120307540023e-09!GO:0051188;cofactor biosynthetic process;6.99271072690333e-09!GO:0006364;rRNA processing;8.49785045083805e-09!GO:0008639;small protein conjugating enzyme activity;9.77331350375782e-09!GO:0016887;ATPase activity;1.00480221001379e-08!GO:0048523;negative regulation of cellular process;1.1097071891992e-08!GO:0004386;helicase activity;1.35353922530944e-08!GO:0016607;nuclear speck;1.41139872288387e-08!GO:0006333;chromatin assembly or disassembly;1.57026624702768e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.57131422385739e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.57131422385739e-08!GO:0009117;nucleotide metabolic process;1.69416964641565e-08!GO:0000785;chromatin;1.90555604210697e-08!GO:0004842;ubiquitin-protein ligase activity;1.91461350525618e-08!GO:0015986;ATP synthesis coupled proton transport;2.19471704726127e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.19471704726127e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.32067705250898e-08!GO:0019787;small conjugating protein ligase activity;2.55967538395278e-08!GO:0016072;rRNA metabolic process;2.6239192846973e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.85286691680309e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.85286691680309e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.91306211400712e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.91306211400712e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.91306211400712e-08!GO:0051246;regulation of protein metabolic process;3.51640213421052e-08!GO:0006099;tricarboxylic acid cycle;4.40274810289584e-08!GO:0046356;acetyl-CoA catabolic process;4.40274810289584e-08!GO:0046930;pore complex;4.75899966860058e-08!GO:0046034;ATP metabolic process;4.85786652872208e-08!GO:0043038;amino acid activation;5.05264495931548e-08!GO:0006418;tRNA aminoacylation for protein translation;5.05264495931548e-08!GO:0043039;tRNA aminoacylation;5.05264495931548e-08!GO:0003924;GTPase activity;5.08692420000412e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.43951345194509e-08!GO:0019829;cation-transporting ATPase activity;5.87901486505654e-08!GO:0007005;mitochondrion organization and biogenesis;6.83555336282296e-08!GO:0030120;vesicle coat;7.21956553957984e-08!GO:0030662;coated vesicle membrane;7.21956553957984e-08!GO:0005788;endoplasmic reticulum lumen;8.31232924951959e-08!GO:0015630;microtubule cytoskeleton;8.70988555885872e-08!GO:0051187;cofactor catabolic process;9.81000248010285e-08!GO:0048475;coated membrane;1.20750071527827e-07!GO:0030117;membrane coat;1.20750071527827e-07!GO:0006334;nucleosome assembly;1.23909337941156e-07!GO:0008026;ATP-dependent helicase activity;1.2975483040032e-07!GO:0050657;nucleic acid transport;1.32805395510892e-07!GO:0051236;establishment of RNA localization;1.32805395510892e-07!GO:0050658;RNA transport;1.32805395510892e-07!GO:0006403;RNA localization;1.34426710903794e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.42858188656374e-07!GO:0009109;coenzyme catabolic process;1.52251094361648e-07!GO:0006084;acetyl-CoA metabolic process;1.55801251293815e-07!GO:0016740;transferase activity;2.11922686555358e-07!GO:0006366;transcription from RNA polymerase II promoter;2.25693794358385e-07!GO:0016853;isomerase activity;2.35314569857211e-07!GO:0005768;endosome;2.61118640976645e-07!GO:0016881;acid-amino acid ligase activity;3.2787271905829e-07!GO:0006754;ATP biosynthetic process;3.692821895322e-07!GO:0006753;nucleoside phosphate metabolic process;3.692821895322e-07!GO:0009108;coenzyme biosynthetic process;3.96051714143314e-07!GO:0003697;single-stranded DNA binding;4.21250920087443e-07!GO:0044431;Golgi apparatus part;4.24681597441088e-07!GO:0048519;negative regulation of biological process;4.68659374347013e-07!GO:0031497;chromatin assembly;5.08273424287312e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.15594780779773e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.78500159160469e-07!GO:0050794;regulation of cellular process;8.9202355668496e-07!GO:0043067;regulation of programmed cell death;9.79426735808756e-07!GO:0042981;regulation of apoptosis;1.01208522941865e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.05515215968018e-06!GO:0031988;membrane-bound vesicle;1.09455459663011e-06!GO:0045259;proton-transporting ATP synthase complex;1.28221037760904e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.32322285228834e-06!GO:0043566;structure-specific DNA binding;1.33379646184278e-06!GO:0016787;hydrolase activity;1.3856703478569e-06!GO:0043069;negative regulation of programmed cell death;1.44254073091301e-06!GO:0031252;leading edge;1.4868453355068e-06!GO:0006793;phosphorus metabolic process;1.83955402832416e-06!GO:0006796;phosphate metabolic process;1.83955402832416e-06!GO:0006752;group transfer coenzyme metabolic process;2.02712071785176e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.09441059716706e-06!GO:0005762;mitochondrial large ribosomal subunit;2.11261720468756e-06!GO:0000315;organellar large ribosomal subunit;2.11261720468756e-06!GO:0043066;negative regulation of apoptosis;2.29883370755342e-06!GO:0016859;cis-trans isomerase activity;2.33652141396593e-06!GO:0051170;nuclear import;2.35667044011283e-06!GO:0031982;vesicle;3.39664153063472e-06!GO:0032446;protein modification by small protein conjugation;3.55442677267045e-06!GO:0031410;cytoplasmic vesicle;3.69335418250607e-06!GO:0000245;spliceosome assembly;3.72199153601769e-06!GO:0043623;cellular protein complex assembly;3.75244613574944e-06!GO:0008654;phospholipid biosynthetic process;3.8021633569857e-06!GO:0051329;interphase of mitotic cell cycle;3.88679561481406e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.98220191909781e-06!GO:0006091;generation of precursor metabolites and energy;4.27344906710546e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.34225489765058e-06!GO:0005770;late endosome;4.57504087452365e-06!GO:0016310;phosphorylation;4.68058227666304e-06!GO:0051028;mRNA transport;4.86272632727584e-06!GO:0006916;anti-apoptosis;5.53324406228075e-06!GO:0015980;energy derivation by oxidation of organic compounds;5.55563690400431e-06!GO:0006606;protein import into nucleus;5.63520326869136e-06!GO:0016567;protein ubiquitination;5.67649242600068e-06!GO:0000151;ubiquitin ligase complex;6.47109039624105e-06!GO:0045454;cell redox homeostasis;6.76244413416594e-06!GO:0006613;cotranslational protein targeting to membrane;6.79255533744219e-06!GO:0004298;threonine endopeptidase activity;7.5594556780602e-06!GO:0005819;spindle;7.9338045713928e-06!GO:0005667;transcription factor complex;8.11127060981234e-06!GO:0016779;nucleotidyltransferase activity;8.26687344480556e-06!GO:0005813;centrosome;9.08505506286145e-06!GO:0005798;Golgi-associated vesicle;9.28064072890607e-06!GO:0016126;sterol biosynthetic process;1.08203717703892e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.10476301539869e-05!GO:0005791;rough endoplasmic reticulum;1.10476301539869e-05!GO:0000139;Golgi membrane;1.33781028605572e-05!GO:0051325;interphase;1.43574355075806e-05!GO:0016568;chromatin modification;1.47039771755817e-05!GO:0005773;vacuole;1.68608099815115e-05!GO:0005525;GTP binding;1.72809758655632e-05!GO:0031324;negative regulation of cellular metabolic process;1.98672316126753e-05!GO:0045786;negative regulation of progression through cell cycle;2.14930844541372e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.34855763007043e-05!GO:0044440;endosomal part;2.36603292525683e-05!GO:0010008;endosome membrane;2.36603292525683e-05!GO:0007010;cytoskeleton organization and biogenesis;2.40962277868834e-05!GO:0005815;microtubule organizing center;2.61280908854854e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.89240143648272e-05!GO:0030867;rough endoplasmic reticulum membrane;2.91441998965885e-05!GO:0003724;RNA helicase activity;3.06061263396512e-05!GO:0003714;transcription corepressor activity;3.33194991021262e-05!GO:0031968;organelle outer membrane;3.6032441421424e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.82022294549285e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.32648479905087e-05!GO:0019867;outer membrane;5.41019858236542e-05!GO:0050789;regulation of biological process;5.67264136361213e-05!GO:0000314;organellar small ribosomal subunit;5.67264136361213e-05!GO:0005763;mitochondrial small ribosomal subunit;5.67264136361213e-05!GO:0032561;guanyl ribonucleotide binding;5.99819013354056e-05!GO:0019001;guanyl nucleotide binding;5.99819013354056e-05!GO:0008610;lipid biosynthetic process;6.15139723576069e-05!GO:0009165;nucleotide biosynthetic process;6.27996792313673e-05!GO:0016564;transcription repressor activity;6.37923492588205e-05!GO:0043021;ribonucleoprotein binding;6.56693135199974e-05!GO:0008361;regulation of cell size;6.68955006765323e-05!GO:0006261;DNA-dependent DNA replication;6.80038708139097e-05!GO:0051789;response to protein stimulus;8.14263610880358e-05!GO:0006986;response to unfolded protein;8.14263610880358e-05!GO:0000775;chromosome, pericentric region;0.000107234325531902!GO:0007051;spindle organization and biogenesis;0.000113836258149669!GO:0016049;cell growth;0.000115658247987223!GO:0019899;enzyme binding;0.000121117738261104!GO:0009892;negative regulation of metabolic process;0.00012658470603155!GO:0033116;ER-Golgi intermediate compartment membrane;0.000127940096199417!GO:0051427;hormone receptor binding;0.000130476637726859!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000132310843160199!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000138015348638281!GO:0003899;DNA-directed RNA polymerase activity;0.000138280390529888!GO:0000323;lytic vacuole;0.000139997323836445!GO:0005764;lysosome;0.000139997323836445!GO:0030133;transport vesicle;0.000158034405755658!GO:0006695;cholesterol biosynthetic process;0.000158257447872339!GO:0030036;actin cytoskeleton organization and biogenesis;0.000179909850188762!GO:0005741;mitochondrial outer membrane;0.000185966080575255!GO:0006612;protein targeting to membrane;0.000190125865054402!GO:0003713;transcription coactivator activity;0.000198701915860913!GO:0005048;signal sequence binding;0.00021343428988795!GO:0043681;protein import into mitochondrion;0.00025096706043058!GO:0004576;oligosaccharyl transferase activity;0.000256637071415863!GO:0005905;coated pit;0.000261886771288374!GO:0035257;nuclear hormone receptor binding;0.000270605117170548!GO:0001558;regulation of cell growth;0.000273748474741952!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000277188629395564!GO:0016563;transcription activator activity;0.000290875440933852!GO:0005769;early endosome;0.000300935593215671!GO:0030663;COPI coated vesicle membrane;0.000304453596567577!GO:0030126;COPI vesicle coat;0.000304453596567577!GO:0008250;oligosaccharyl transferase complex;0.000307203358033571!GO:0006626;protein targeting to mitochondrion;0.000307661591585756!GO:0005885;Arp2/3 protein complex;0.000330072421409372!GO:0000075;cell cycle checkpoint;0.000348152392117169!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000408175947758552!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00041443306414038!GO:0046474;glycerophospholipid biosynthetic process;0.000443227252666505!GO:0006839;mitochondrial transport;0.000542828096525983!GO:0051168;nuclear export;0.000610434191901687!GO:0016481;negative regulation of transcription;0.000629827102670925!GO:0044262;cellular carbohydrate metabolic process;0.000636887055260077!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000654322429967138!GO:0018196;peptidyl-asparagine modification;0.00071773759861729!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00071773759861729!GO:0051920;peroxiredoxin activity;0.000756991035311879!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000779857690353089!GO:0008094;DNA-dependent ATPase activity;0.000779857690353089!GO:0000786;nucleosome;0.000834785967376517!GO:0030027;lamellipodium;0.000842780449254044!GO:0007243;protein kinase cascade;0.000860409894006453!GO:0005657;replication fork;0.000861742126082119!GO:0016363;nuclear matrix;0.000909931249009704!GO:0006414;translational elongation;0.000933462841435116!GO:0007006;mitochondrial membrane organization and biogenesis;0.000970367622445612!GO:0030137;COPI-coated vesicle;0.000970367622445612!GO:0000059;protein import into nucleus, docking;0.000979896340127455!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000983686334311159!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000990444015794277!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000990444015794277!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000990444015794277!GO:0008186;RNA-dependent ATPase activity;0.000998825420768046!GO:0006891;intra-Golgi vesicle-mediated transport;0.00108403410877969!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00108682728582849!GO:0042802;identical protein binding;0.00109973584995634!GO:0006950;response to stress;0.00115723416135018!GO:0030029;actin filament-based process;0.00116683427459888!GO:0019752;carboxylic acid metabolic process;0.00119009829068306!GO:0046467;membrane lipid biosynthetic process;0.00120237377106784!GO:0006082;organic acid metabolic process;0.00121189287457626!GO:0031072;heat shock protein binding;0.00125018146734636!GO:0003684;damaged DNA binding;0.00126535249081827!GO:0043284;biopolymer biosynthetic process;0.00129012175172232!GO:0030176;integral to endoplasmic reticulum membrane;0.00129164056991777!GO:0019843;rRNA binding;0.00136962990410001!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00140221254354156!GO:0046483;heterocycle metabolic process;0.00144492880860383!GO:0051252;regulation of RNA metabolic process;0.0014630444554957!GO:0043488;regulation of mRNA stability;0.00149562279695113!GO:0043487;regulation of RNA stability;0.00149562279695113!GO:0003729;mRNA binding;0.00157996944247226!GO:0003690;double-stranded DNA binding;0.00157996944247226!GO:0051052;regulation of DNA metabolic process;0.00165206424804897!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00171340630003121!GO:0048500;signal recognition particle;0.00173778597054219!GO:0048471;perinuclear region of cytoplasm;0.00173838865698657!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00181688000433134!GO:0001726;ruffle;0.00184355422125798!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00186453980151897!GO:0008033;tRNA processing;0.00190424842181527!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00192358702779659!GO:0006979;response to oxidative stress;0.0019742827330587!GO:0009112;nucleobase metabolic process;0.00198231145736731!GO:0008180;signalosome;0.00212022828695438!GO:0000082;G1/S transition of mitotic cell cycle;0.00214922748521849!GO:0030880;RNA polymerase complex;0.00231764485114422!GO:0006383;transcription from RNA polymerase III promoter;0.00250105759789265!GO:0015631;tubulin binding;0.00257362795193195!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00260632535113222!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00260632535113222!GO:0005684;U2-dependent spliceosome;0.00260632535113222!GO:0004004;ATP-dependent RNA helicase activity;0.00261917106669072!GO:0006302;double-strand break repair;0.00287557535267665!GO:0065009;regulation of a molecular function;0.00294384829477683!GO:0051087;chaperone binding;0.00301554055306035!GO:0000776;kinetochore;0.00303412216369978!GO:0044452;nucleolar part;0.00318482406736998!GO:0048522;positive regulation of cellular process;0.00325945130479703!GO:0035258;steroid hormone receptor binding;0.00338321255130241!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00339048944010478!GO:0015002;heme-copper terminal oxidase activity;0.00339048944010478!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00339048944010478!GO:0004129;cytochrome-c oxidase activity;0.00339048944010478!GO:0006352;transcription initiation;0.00346114612649165!GO:0006520;amino acid metabolic process;0.00346114612649165!GO:0004177;aminopeptidase activity;0.00347012504652194!GO:0030658;transport vesicle membrane;0.00347109680131525!GO:0051287;NAD binding;0.00347599314357924!GO:0048487;beta-tubulin binding;0.00356650988007905!GO:0030134;ER to Golgi transport vesicle;0.00364800959738185!GO:0016044;membrane organization and biogenesis;0.00365126054532249!GO:0046489;phosphoinositide biosynthetic process;0.00388367527404415!GO:0005874;microtubule;0.00388367527404415!GO:0030659;cytoplasmic vesicle membrane;0.00395727327031186!GO:0008312;7S RNA binding;0.00399076889982466!GO:0015992;proton transport;0.00408179906765063!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00413993511023312!GO:0045047;protein targeting to ER;0.00413993511023312!GO:0016741;transferase activity, transferring one-carbon groups;0.0042094774269394!GO:0003678;DNA helicase activity;0.00426015701933637!GO:0008168;methyltransferase activity;0.00429610562310074!GO:0006402;mRNA catabolic process;0.00451101031977359!GO:0030132;clathrin coat of coated pit;0.00456539580818116!GO:0006818;hydrogen transport;0.00459108458206279!GO:0051540;metal cluster binding;0.0046205802017136!GO:0051536;iron-sulfur cluster binding;0.0046205802017136!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00495769040064166!GO:0030118;clathrin coat;0.00498000757349518!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00498000757349518!GO:0000428;DNA-directed RNA polymerase complex;0.00498000757349518!GO:0008139;nuclear localization sequence binding;0.00506753316135884!GO:0006310;DNA recombination;0.00514116881563701!GO:0045045;secretory pathway;0.005195814688467!GO:0030127;COPII vesicle coat;0.00519675806702129!GO:0012507;ER to Golgi transport vesicle membrane;0.00519675806702129!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00535299746470208!GO:0050662;coenzyme binding;0.00552815816774914!GO:0006595;polyamine metabolic process;0.00561030119202647!GO:0016251;general RNA polymerase II transcription factor activity;0.00587407801811297!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00596593738173665!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00620971754113831!GO:0009116;nucleoside metabolic process;0.0062429382971534!GO:0051128;regulation of cellular component organization and biogenesis;0.0062429382971534!GO:0007088;regulation of mitosis;0.00626106520785876!GO:0007050;cell cycle arrest;0.0062912008524862!GO:0005637;nuclear inner membrane;0.00637129672342059!GO:0031902;late endosome membrane;0.00637129672342059!GO:0008047;enzyme activator activity;0.00654718593052701!GO:0016125;sterol metabolic process;0.00662970053796103!GO:0007052;mitotic spindle organization and biogenesis;0.00681456937363172!GO:0017166;vinculin binding;0.00692607714292411!GO:0004674;protein serine/threonine kinase activity;0.00702141117165497!GO:0044433;cytoplasmic vesicle part;0.00711484960199123!GO:0030521;androgen receptor signaling pathway;0.00721769521365647!GO:0008092;cytoskeletal protein binding;0.00733544035750049!GO:0022890;inorganic cation transmembrane transporter activity;0.00733810887274831!GO:0006650;glycerophospholipid metabolic process;0.00733810887274831!GO:0030660;Golgi-associated vesicle membrane;0.007718139257289!GO:0016408;C-acyltransferase activity;0.00787326408121969!GO:0005869;dynactin complex;0.00794113870617048!GO:0008632;apoptotic program;0.00809860428781818!GO:0051539;4 iron, 4 sulfur cluster binding;0.00815236847455557!GO:0003682;chromatin binding;0.00828961668749145!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00859153766412282!GO:0031124;mRNA 3'-end processing;0.00875346191239194!GO:0016860;intramolecular oxidoreductase activity;0.00901852062163767!GO:0007093;mitotic cell cycle checkpoint;0.00926426896178941!GO:0019222;regulation of metabolic process;0.00945631227814669!GO:0030145;manganese ion binding;0.00959803430469617!GO:0006401;RNA catabolic process;0.00974962149210299!GO:0065007;biological regulation;0.0100074153402506!GO:0007264;small GTPase mediated signal transduction;0.0100348079187172!GO:0007040;lysosome organization and biogenesis;0.0101879677321119!GO:0043022;ribosome binding;0.0103143239149724!GO:0008243;plasminogen activator activity;0.0107409179839471!GO:0006220;pyrimidine nucleotide metabolic process;0.0107873662455096!GO:0000049;tRNA binding;0.0107873662455096!GO:0006611;protein export from nucleus;0.0111075465609518!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0111965435111918!GO:0006740;NADPH regeneration;0.0112366701505914!GO:0006098;pentose-phosphate shunt;0.0112366701505914!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0112396230144681!GO:0005862;muscle thin filament tropomyosin;0.0118503503804744!GO:0016197;endosome transport;0.0119025061288197!GO:0005832;chaperonin-containing T-complex;0.011909772656582!GO:0005586;collagen type III;0.0120352567269124!GO:0031625;ubiquitin protein ligase binding;0.0122085346637074!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0123434179798819!GO:0006509;membrane protein ectodomain proteolysis;0.0123626347593172!GO:0033619;membrane protein proteolysis;0.0123626347593172!GO:0016584;nucleosome positioning;0.0123909945035182!GO:0003746;translation elongation factor activity;0.0124163553319075!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.012519397709832!GO:0015399;primary active transmembrane transporter activity;0.012519397709832!GO:0016272;prefoldin complex;0.012519397709832!GO:0032508;DNA duplex unwinding;0.012576367311595!GO:0032392;DNA geometric change;0.012576367311595!GO:0005581;collagen;0.012581469002045!GO:0006275;regulation of DNA replication;0.0128250857676882!GO:0003711;transcription elongation regulator activity;0.0128378128021206!GO:0012506;vesicle membrane;0.0132089231857334!GO:0000339;RNA cap binding;0.0132823192067203!GO:0006778;porphyrin metabolic process;0.0139812594914158!GO:0033013;tetrapyrrole metabolic process;0.0139812594914158!GO:0050750;low-density lipoprotein receptor binding;0.0140053946123578!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0140053946123578!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0141351375802848!GO:0040008;regulation of growth;0.014389713098598!GO:0004527;exonuclease activity;0.0151794169666348!GO:0006643;membrane lipid metabolic process;0.0155447845542265!GO:0006144;purine base metabolic process;0.0156457236945693!GO:0045892;negative regulation of transcription, DNA-dependent;0.0159993428209351!GO:0051101;regulation of DNA binding;0.0160509391862435!GO:0006733;oxidoreduction coenzyme metabolic process;0.0164712826993216!GO:0030032;lamellipodium biogenesis;0.0164813364123742!GO:0005774;vacuolar membrane;0.0173066636581521!GO:0007017;microtubule-based process;0.0173996278922812!GO:0050811;GABA receptor binding;0.0174930252593862!GO:0031529;ruffle organization and biogenesis;0.0178359644483033!GO:0000209;protein polyubiquitination;0.0182004252711517!GO:0032984;macromolecular complex disassembly;0.0183700052864547!GO:0006289;nucleotide-excision repair;0.0185320666870347!GO:0006268;DNA unwinding during replication;0.018972000128611!GO:0008629;induction of apoptosis by intracellular signals;0.019019932443312!GO:0005669;transcription factor TFIID complex;0.0194517633243569!GO:0050681;androgen receptor binding;0.0198088831239884!GO:0005876;spindle microtubule;0.0202113652542339!GO:0007033;vacuole organization and biogenesis;0.02035120921674!GO:0006118;electron transport;0.0211087769159133!GO:0006892;post-Golgi vesicle-mediated transport;0.0211387233468659!GO:0000096;sulfur amino acid metabolic process;0.02116883080741!GO:0003756;protein disulfide isomerase activity;0.0213973903004288!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0213973903004288!GO:0031418;L-ascorbic acid binding;0.0219617029149792!GO:0006790;sulfur metabolic process;0.0220161058337595!GO:0030119;AP-type membrane coat adaptor complex;0.022088257494288!GO:0031970;organelle envelope lumen;0.0222250138020703!GO:0019798;procollagen-proline dioxygenase activity;0.022306047993964!GO:0005096;GTPase activator activity;0.0224760191123245!GO:0006405;RNA export from nucleus;0.0225432129834528!GO:0009967;positive regulation of signal transduction;0.0231860664885759!GO:0005758;mitochondrial intermembrane space;0.0238386075717312!GO:0042770;DNA damage response, signal transduction;0.0239678010333473!GO:0033559;unsaturated fatty acid metabolic process;0.0242293155921817!GO:0006636;unsaturated fatty acid biosynthetic process;0.0242293155921817!GO:0004003;ATP-dependent DNA helicase activity;0.0247165836608858!GO:0006720;isoprenoid metabolic process;0.0247190031650803!GO:0000910;cytokinesis;0.0247190031650803!GO:0031543;peptidyl-proline dioxygenase activity;0.0252102677542677!GO:0030384;phosphoinositide metabolic process;0.0253086971299251!GO:0006497;protein amino acid lipidation;0.0254230485289895!GO:0006417;regulation of translation;0.0255910206183715!GO:0048468;cell development;0.0259897301165677!GO:0030518;steroid hormone receptor signaling pathway;0.0260255892538852!GO:0007059;chromosome segregation;0.0260255892538852!GO:0051098;regulation of binding;0.0261842242696205!GO:0000287;magnesium ion binding;0.0262300815429932!GO:0015036;disulfide oxidoreductase activity;0.0262701254370937!GO:0030508;thiol-disulfide exchange intermediate activity;0.0263721642910471!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0267008413560899!GO:0043624;cellular protein complex disassembly;0.0267222674394714!GO:0000792;heterochromatin;0.0269590354621004!GO:0006769;nicotinamide metabolic process;0.0272504826208014!GO:0046519;sphingoid metabolic process;0.0272504826208014!GO:0008299;isoprenoid biosynthetic process;0.0275597907699025!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0275782427745857!GO:0031901;early endosome membrane;0.0275910720704334!GO:0048037;cofactor binding;0.0281169182938378!GO:0007034;vacuolar transport;0.0284038956319557!GO:0006672;ceramide metabolic process;0.0285322957908169!GO:0042158;lipoprotein biosynthetic process;0.0286538552615717!GO:0043241;protein complex disassembly;0.0292194799046157!GO:0019206;nucleoside kinase activity;0.029520911492334!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.029520911492334!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.029520911492334!GO:0008637;apoptotic mitochondrial changes;0.0298550782680792!GO:0009119;ribonucleoside metabolic process;0.0304637399876758!GO:0006984;ER-nuclear signaling pathway;0.0307690254455066!GO:0004448;isocitrate dehydrogenase activity;0.0308913941141019!GO:0009303;rRNA transcription;0.0308913941141019!GO:0035035;histone acetyltransferase binding;0.0309008889289248!GO:0008286;insulin receptor signaling pathway;0.0309008889289248!GO:0022406;membrane docking;0.0309008889289248!GO:0048278;vesicle docking;0.0309008889289248!GO:0030496;midbody;0.0311567385307839!GO:0006807;nitrogen compound metabolic process;0.0312141679001071!GO:0006779;porphyrin biosynthetic process;0.0313557168879015!GO:0033014;tetrapyrrole biosynthetic process;0.0313557168879015!GO:0006739;NADP metabolic process;0.0315903360858975!GO:0006338;chromatin remodeling;0.0315903360858975!GO:0030125;clathrin vesicle coat;0.0315903360858975!GO:0030665;clathrin coated vesicle membrane;0.0315903360858975!GO:0006519;amino acid and derivative metabolic process;0.032312554304871!GO:0006607;NLS-bearing substrate import into nucleus;0.0323767418408244!GO:0008154;actin polymerization and/or depolymerization;0.0324128576818488!GO:0031371;ubiquitin conjugating enzyme complex;0.0331597955919438!GO:0006066;alcohol metabolic process;0.0335988890928643!GO:0006007;glucose catabolic process;0.0336429758076508!GO:0007021;tubulin folding;0.0337560983029547!GO:0006644;phospholipid metabolic process;0.0337824286655623!GO:0008538;proteasome activator activity;0.0339144103516169!GO:0016407;acetyltransferase activity;0.0340374293705208!GO:0030041;actin filament polymerization;0.0341323158705553!GO:0045792;negative regulation of cell size;0.0342376204516726!GO:0050790;regulation of catalytic activity;0.0345392821312452!GO:0042168;heme metabolic process;0.0345392821312452!GO:0031123;RNA 3'-end processing;0.0345912771939531!GO:0000178;exosome (RNase complex);0.0346643829203965!GO:0044255;cellular lipid metabolic process;0.0346712839754778!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0348437487154767!GO:0030131;clathrin adaptor complex;0.035480687966735!GO:0006506;GPI anchor biosynthetic process;0.0358364728608503!GO:0030833;regulation of actin filament polymerization;0.0366401340779431!GO:0046426;negative regulation of JAK-STAT cascade;0.0367051758348324!GO:0008022;protein C-terminus binding;0.0375823693182623!GO:0047485;protein N-terminus binding;0.0379148653780937!GO:0007030;Golgi organization and biogenesis;0.0379695630538583!GO:0030433;ER-associated protein catabolic process;0.0383133198053863!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0383133198053863!GO:0005784;translocon complex;0.03834540394276!GO:0009308;amine metabolic process;0.0385600772521696!GO:0030911;TPR domain binding;0.0395376029669113!GO:0042393;histone binding;0.0396518306513673!GO:0044437;vacuolar part;0.0396518306513673!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0396518306513673!GO:0010257;NADH dehydrogenase complex assembly;0.0396518306513673!GO:0033108;mitochondrial respiratory chain complex assembly;0.0396518306513673!GO:0006376;mRNA splice site selection;0.0399948954394836!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0399948954394836!GO:0030308;negative regulation of cell growth;0.040516713474411!GO:0005801;cis-Golgi network;0.0408870567633224!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0411088202943903!GO:0033043;regulation of organelle organization and biogenesis;0.0411088202943903!GO:0005938;cell cortex;0.0423168803838394!GO:0008097;5S rRNA binding;0.0423812565997113!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0425900350055999!GO:0033673;negative regulation of kinase activity;0.0428655487265811!GO:0006469;negative regulation of protein kinase activity;0.0428655487265811!GO:0005765;lysosomal membrane;0.0428655487265811!GO:0006904;vesicle docking during exocytosis;0.043019129650791!GO:0001872;zymosan binding;0.0430876974500067!GO:0001878;response to yeast;0.0430876974500067!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0438283200129732!GO:0016301;kinase activity;0.0439491128962524!GO:0048518;positive regulation of biological process;0.0443419839324344!GO:0040029;regulation of gene expression, epigenetic;0.0446714832530457!GO:0048144;fibroblast proliferation;0.0446770794244399!GO:0048145;regulation of fibroblast proliferation;0.0446770794244399!GO:0050178;phenylpyruvate tautomerase activity;0.0446770794244399!GO:0006505;GPI anchor metabolic process;0.0450600109102957!GO:0006378;mRNA polyadenylation;0.0453001726936843!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.04590509201866!GO:0045039;protein import into mitochondrial inner membrane;0.04590509201866!GO:0016453;C-acetyltransferase activity;0.0466475478943598!GO:0051348;negative regulation of transferase activity;0.0466475478943598!GO:0007346;regulation of progression through mitotic cell cycle;0.0467345896131493!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0470827163681615!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0477682404488359!GO:0000922;spindle pole;0.0477985337327496!GO:0006284;base-excision repair;0.0479861850181469!GO:0043065;positive regulation of apoptosis;0.048658083668789!GO:0006596;polyamine biosynthetic process;0.0489712479483395!GO:0030149;sphingolipid catabolic process;0.0489712479483395!GO:0031570;DNA integrity checkpoint;0.0494117816843908!GO:0051716;cellular response to stimulus;0.0499784210368745!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0499910147682757 | |||
|sample_id=11396 | |sample_id=11396 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=colon | |sample_tissue=colon | ||
|top_motifs=TAL1_TCF{3,4,12}:1.88389853078;NKX3-1:1.51976971087;PAX1,9:1.24794116654;GZF1:1.20530976155;ALX4:1.18765030027;CDC5L:1.13130546675;TFAP4:1.1012171132;HOXA9_MEIS1:0.959090940642;HSF1,2:0.951589105439;ESR1:0.915741453776;GFI1B:0.874923132772;HOX{A5,B5}:0.864391483614;UFEwm:0.862365922466;GFI1:0.847827815801;NR3C1:0.832386247492;TEAD1:0.825739729018;ZNF238:0.789926050486;TOPORS:0.789681818339;YY1:0.772919588957;ATF6:0.766684249734;EN1,2:0.742765120986;EBF1:0.738126227757;TEF:0.735677472178;GLI1..3:0.720296192623;SOX17:0.717289985118;TP53:0.668995411781;NKX2-2,8:0.667428784027;TLX1..3_NFIC{dimer}:0.640684882504;NANOG{mouse}:0.636258985891;RXRA_VDR{dimer}:0.614499431305;DBP:0.589367486273;PBX1:0.581639386582;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.572591403187;SRF:0.566342253869;POU3F1..4:0.566209175561;RXR{A,B,G}:0.557444366374;KLF4:0.521718727338;GTF2A1,2:0.520599133391;E2F1..5:0.511878880046;TBX4,5:0.507058986731;TFDP1:0.504711694776;MZF1:0.499601975851;PAX5:0.483607058359;AIRE:0.475028495141;NFY{A,B,C}:0.474623421077;IKZF1:0.468477931763;SPZ1:0.43297282439;NFIX:0.429707593899;LHX3,4:0.420957903413;MYBL2:0.416297062781;NKX2-1,4:0.402907088435;POU6F1:0.364279146164;TBP:0.354137525225;GTF2I:0.353418528254;NR6A1:0.345970558812;HES1:0.34198428137;ELK1,4_GABP{A,B1}:0.326738728085;CRX:0.322217860238;PATZ1:0.319297218172;POU1F1:0.284427509197;ESRRA:0.284094969;EVI1:0.279783466315;ONECUT1,2:0.274411178934;ZNF423:0.273414372865;HOX{A4,D4}:0.27048585281;PPARG:0.265961449986;ZIC1..3:0.263675963113;STAT5{A,B}:0.242467044382;ZNF143:0.241005252966;bHLH_family:0.234287887362;TFCP2:0.227807508889;XCPE1{core}:0.208466731712;HIC1:0.202257914657;SP1:0.193342709708;NFE2L2:0.188693500867;TFAP2{A,C}:0.185519650511;MAZ:0.173096817629;MYB:0.151972634524;ZNF384:0.150237627466;GCM1,2:0.144059723202;HNF4A_NR2F1,2:0.13975725132;HAND1,2:0.139471417749;NFATC1..3:0.139402310031;HMGA1,2:0.122727002915;PAX4:0.12077061781;SREBF1,2:0.10750351697;NFE2L1:0.106324121425;FOXQ1:0.0943567440045;NRF1:0.0887618413832;AHR_ARNT_ARNT2:0.0813487792787;HLF:0.0762055701651;FOXM1:0.0747935009201;MYFfamily:0.0701811642261;ZBTB16:0.0692091804028;ARID5B:0.0587077583746;TLX2:0.0578919464188;XBP1:0.0574465928266;NR1H4:0.0507033437286;HNF1A:0.0482679370422;CDX1,2,4:0.0415204698491;ADNP_IRX_SIX_ZHX:0.0334923117187;LEF1_TCF7_TCF7L1,2:0.0327818072718;PAX3,7:0.0286261890362;NKX6-1,2:0.0116707973726;GATA4:-0.00565777464427;MAFB:-0.00607396043896;PAX8:-0.0122751268336;NHLH1,2:-0.0155692453708;EGR1..3:-0.0218057390699;MTE{core}:-0.028544436836;ZNF148:-0.0354616814927;NR5A1,2:-0.0470071794235;PRRX1,2:-0.0678566660153;FOXD3:-0.0711728485276;ZFP161:-0.0745903801718;STAT1,3:-0.0826220282908;CEBPA,B_DDIT3:-0.105065099125;AR:-0.107634500886;NKX2-3_NKX2-5:-0.108916724859;ZBTB6:-0.131956426806;FOS_FOS{B,L1}_JUN{B,D}:-0.13538573178;BACH2:-0.137101877299;PRDM1:-0.156460473006;POU5F1:-0.17036390603;TFAP2B:-0.180834314142;HMX1:-0.180911443831;REST:-0.208587047418;RFX1:-0.219275367006;FOXP1:-0.223300171491;MTF1:-0.232174351857;FOX{I1,J2}:-0.241488733848;FOX{F1,F2,J1}:-0.245369749148;PAX2:-0.249200295769;JUN:-0.263820806902;FOSL2:-0.265608473867;NFE2:-0.277378325933;ATF2:-0.27843566048;STAT2,4,6:-0.280639736139;CREB1:-0.28354326448;HIF1A:-0.294315828305;FOXP3:-0.30720848095;OCT4_SOX2{dimer}:-0.32631950142;SMAD1..7,9:-0.326618721332;RUNX1..3:-0.327601146787;SOX5:-0.328487952426;MED-1{core}:-0.336069321238;IRF7:-0.341496878909;ELF1,2,4:-0.360684855913;TGIF1:-0.361828437133;HBP1_HMGB_SSRP1_UBTF:-0.387771566577;NFKB1_REL_RELA:-0.393387832098;HOX{A6,A7,B6,B7}:-0.405387981873;SOX{8,9,10}:-0.416655883401;RREB1:-0.426808807485;RFX2..5_RFXANK_RFXAP:-0.428034314751;NANOG:-0.437423818738;NKX3-2:-0.446497042735;PAX6:-0.450595219997;MEF2{A,B,C,D}:-0.460064929508;PITX1..3:-0.468451754378;IRF1,2:-0.475819093313;FOXA2:-0.49174152985;PDX1:-0.497460395584;FOXL1:-0.518640089423;ALX1:-0.520550154686;ETS1,2:-0.523747372916;POU2F1..3:-0.530432364014;DMAP1_NCOR{1,2}_SMARC:-0.536798871635;GATA6:-0.537214837739;SOX2:-0.540603592024;SPIB:-0.543144968305;ATF5_CREB3:-0.564002781686;BREu{core}:-0.564761747998;SPI1:-0.588669691544;BPTF:-0.597006545575;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.601661583451;ATF4:-0.623633829933;FOXN1:-0.630722571782;FOXO1,3,4:-0.631199393585;T:-0.633521907408;NFIL3:-0.636497435949;RBPJ:-0.709415184896;CUX2:-0.714547617247;LMO2:-0.732497245607;RORA:-0.737425359731;FOX{D1,D2}:-0.763989542139;IKZF2:-0.76909444377;SNAI1..3:-0.825253459119;EP300:-0.907757050579;ZEB1:-0.925616237798;VSX1,2:-0.998863784944;MYOD1:-1.07903687138 | |top_motifs=TAL1_TCF{3,4,12}:1.88389853078;NKX3-1:1.51976971087;PAX1,9:1.24794116654;GZF1:1.20530976155;ALX4:1.18765030027;CDC5L:1.13130546675;TFAP4:1.1012171132;HOXA9_MEIS1:0.959090940642;HSF1,2:0.951589105439;ESR1:0.915741453776;GFI1B:0.874923132772;HOX{A5,B5}:0.864391483614;UFEwm:0.862365922466;GFI1:0.847827815801;NR3C1:0.832386247492;TEAD1:0.825739729018;ZNF238:0.789926050486;TOPORS:0.789681818339;YY1:0.772919588957;ATF6:0.766684249734;EN1,2:0.742765120986;EBF1:0.738126227757;TEF:0.735677472178;GLI1..3:0.720296192623;SOX17:0.717289985118;TP53:0.668995411781;NKX2-2,8:0.667428784027;TLX1..3_NFIC{dimer}:0.640684882504;NANOG{mouse}:0.636258985891;RXRA_VDR{dimer}:0.614499431305;DBP:0.589367486273;PBX1:0.581639386582;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.572591403187;SRF:0.566342253869;POU3F1..4:0.566209175561;RXR{A,B,G}:0.557444366374;KLF4:0.521718727338;GTF2A1,2:0.520599133391;E2F1..5:0.511878880046;TBX4,5:0.507058986731;TFDP1:0.504711694776;MZF1:0.499601975851;PAX5:0.483607058359;AIRE:0.475028495141;NFY{A,B,C}:0.474623421077;IKZF1:0.468477931763;SPZ1:0.43297282439;NFIX:0.429707593899;LHX3,4:0.420957903413;MYBL2:0.416297062781;NKX2-1,4:0.402907088435;POU6F1:0.364279146164;TBP:0.354137525225;GTF2I:0.353418528254;NR6A1:0.345970558812;HES1:0.34198428137;ELK1,4_GABP{A,B1}:0.326738728085;CRX:0.322217860238;PATZ1:0.319297218172;POU1F1:0.284427509197;ESRRA:0.284094969;EVI1:0.279783466315;ONECUT1,2:0.274411178934;ZNF423:0.273414372865;HOX{A4,D4}:0.27048585281;PPARG:0.265961449986;ZIC1..3:0.263675963113;STAT5{A,B}:0.242467044382;ZNF143:0.241005252966;bHLH_family:0.234287887362;TFCP2:0.227807508889;XCPE1{core}:0.208466731712;HIC1:0.202257914657;SP1:0.193342709708;NFE2L2:0.188693500867;TFAP2{A,C}:0.185519650511;MAZ:0.173096817629;MYB:0.151972634524;ZNF384:0.150237627466;GCM1,2:0.144059723202;HNF4A_NR2F1,2:0.13975725132;HAND1,2:0.139471417749;NFATC1..3:0.139402310031;HMGA1,2:0.122727002915;PAX4:0.12077061781;SREBF1,2:0.10750351697;NFE2L1:0.106324121425;FOXQ1:0.0943567440045;NRF1:0.0887618413832;AHR_ARNT_ARNT2:0.0813487792787;HLF:0.0762055701651;FOXM1:0.0747935009201;MYFfamily:0.0701811642261;ZBTB16:0.0692091804028;ARID5B:0.0587077583746;TLX2:0.0578919464188;XBP1:0.0574465928266;NR1H4:0.0507033437286;HNF1A:0.0482679370422;CDX1,2,4:0.0415204698491;ADNP_IRX_SIX_ZHX:0.0334923117187;LEF1_TCF7_TCF7L1,2:0.0327818072718;PAX3,7:0.0286261890362;NKX6-1,2:0.0116707973726;GATA4:-0.00565777464427;MAFB:-0.00607396043896;PAX8:-0.0122751268336;NHLH1,2:-0.0155692453708;EGR1..3:-0.0218057390699;MTE{core}:-0.028544436836;ZNF148:-0.0354616814927;NR5A1,2:-0.0470071794235;PRRX1,2:-0.0678566660153;FOXD3:-0.0711728485276;ZFP161:-0.0745903801718;STAT1,3:-0.0826220282908;CEBPA,B_DDIT3:-0.105065099125;AR:-0.107634500886;NKX2-3_NKX2-5:-0.108916724859;ZBTB6:-0.131956426806;FOS_FOS{B,L1}_JUN{B,D}:-0.13538573178;BACH2:-0.137101877299;PRDM1:-0.156460473006;POU5F1:-0.17036390603;TFAP2B:-0.180834314142;HMX1:-0.180911443831;REST:-0.208587047418;RFX1:-0.219275367006;FOXP1:-0.223300171491;MTF1:-0.232174351857;FOX{I1,J2}:-0.241488733848;FOX{F1,F2,J1}:-0.245369749148;PAX2:-0.249200295769;JUN:-0.263820806902;FOSL2:-0.265608473867;NFE2:-0.277378325933;ATF2:-0.27843566048;STAT2,4,6:-0.280639736139;CREB1:-0.28354326448;HIF1A:-0.294315828305;FOXP3:-0.30720848095;OCT4_SOX2{dimer}:-0.32631950142;SMAD1..7,9:-0.326618721332;RUNX1..3:-0.327601146787;SOX5:-0.328487952426;MED-1{core}:-0.336069321238;IRF7:-0.341496878909;ELF1,2,4:-0.360684855913;TGIF1:-0.361828437133;HBP1_HMGB_SSRP1_UBTF:-0.387771566577;NFKB1_REL_RELA:-0.393387832098;HOX{A6,A7,B6,B7}:-0.405387981873;SOX{8,9,10}:-0.416655883401;RREB1:-0.426808807485;RFX2..5_RFXANK_RFXAP:-0.428034314751;NANOG:-0.437423818738;NKX3-2:-0.446497042735;PAX6:-0.450595219997;MEF2{A,B,C,D}:-0.460064929508;PITX1..3:-0.468451754378;IRF1,2:-0.475819093313;FOXA2:-0.49174152985;PDX1:-0.497460395584;FOXL1:-0.518640089423;ALX1:-0.520550154686;ETS1,2:-0.523747372916;POU2F1..3:-0.530432364014;DMAP1_NCOR{1,2}_SMARC:-0.536798871635;GATA6:-0.537214837739;SOX2:-0.540603592024;SPIB:-0.543144968305;ATF5_CREB3:-0.564002781686;BREu{core}:-0.564761747998;SPI1:-0.588669691544;BPTF:-0.597006545575;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.601661583451;ATF4:-0.623633829933;FOXN1:-0.630722571782;FOXO1,3,4:-0.631199393585;T:-0.633521907408;NFIL3:-0.636497435949;RBPJ:-0.709415184896;CUX2:-0.714547617247;LMO2:-0.732497245607;RORA:-0.737425359731;FOX{D1,D2}:-0.763989542139;IKZF2:-0.76909444377;SNAI1..3:-0.825253459119;EP300:-0.907757050579;ZEB1:-0.925616237798;VSX1,2:-0.998863784944;MYOD1:-1.07903687138 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11396-118D1;search_select_hide=table117:FF:11396-118D1 | |||
}} | }} | ||
Latest revision as of 17:57, 4 June 2020
| Name: | Smooth Muscle Cells - Colonic, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12007 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12007
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12007
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.338 |
| 10 | 10 | 0.977 |
| 100 | 100 | 0.156 |
| 101 | 101 | 0.43 |
| 102 | 102 | 0.156 |
| 103 | 103 | 0.745 |
| 104 | 104 | 0.863 |
| 105 | 105 | 0.169 |
| 106 | 106 | 0.134 |
| 107 | 107 | 0.911 |
| 108 | 108 | 0.614 |
| 109 | 109 | 0.418 |
| 11 | 11 | 0.742 |
| 110 | 110 | 0.476 |
| 111 | 111 | 0.38 |
| 112 | 112 | 0.218 |
| 113 | 113 | 0.13 |
| 114 | 114 | 0.217 |
| 115 | 115 | 0.125 |
| 116 | 116 | 0.16 |
| 117 | 117 | 0.612 |
| 118 | 118 | 0.995 |
| 119 | 119 | 0.117 |
| 12 | 12 | 0.266 |
| 120 | 120 | 0.204 |
| 121 | 121 | 0.345 |
| 122 | 122 | 0.019 |
| 123 | 123 | 0.0476 |
| 124 | 124 | 0.0641 |
| 125 | 125 | 0.265 |
| 126 | 126 | 0.753 |
| 127 | 127 | 0.233 |
| 128 | 128 | 0.706 |
| 129 | 129 | 0.0455 |
| 13 | 13 | 0.861 |
| 130 | 130 | 0.0137 |
| 131 | 131 | 0.577 |
| 132 | 132 | 0.948 |
| 133 | 133 | 0.913 |
| 134 | 134 | 0.446 |
| 135 | 135 | 0.386 |
| 136 | 136 | 0.0863 |
| 137 | 137 | 0.0226 |
| 138 | 138 | 0.121 |
| 139 | 139 | 0.113 |
| 14 | 14 | 0.126 |
| 140 | 140 | 0.227 |
| 141 | 141 | 0.318 |
| 142 | 142 | 0.899 |
| 143 | 143 | 0.343 |
| 144 | 144 | 0.827 |
| 145 | 145 | 0.544 |
| 146 | 146 | 0.802 |
| 147 | 147 | 0.438 |
| 148 | 148 | 0.279 |
| 149 | 149 | 0.803 |
| 15 | 15 | 0.0703 |
| 150 | 150 | 0.768 |
| 151 | 151 | 0.919 |
| 152 | 152 | 0.138 |
| 153 | 153 | 0.389 |
| 154 | 154 | 0.819 |
| 155 | 155 | 5.98858e-4 |
| 156 | 156 | 0.517 |
| 157 | 157 | 0.409 |
| 158 | 158 | 0.00944 |
| 159 | 159 | 0.177 |
| 16 | 16 | 0.634 |
| 160 | 160 | 0.911 |
| 161 | 161 | 0.731 |
| 162 | 162 | 0.238 |
| 163 | 163 | 0.947 |
| 164 | 164 | 0.285 |
| 165 | 165 | 0.42 |
| 166 | 166 | 0.0385 |
| 167 | 167 | 0.321 |
| 168 | 168 | 0.0929 |
| 169 | 169 | 0.616 |
| 17 | 17 | 0.605 |
| 18 | 18 | 0.644 |
| 19 | 19 | 0.436 |
| 2 | 2 | 0.905 |
| 20 | 20 | 0.74 |
| 21 | 21 | 0.586 |
| 22 | 22 | 0.83 |
| 23 | 23 | 0.203 |
| 24 | 24 | 0.584 |
| 25 | 25 | 0.14 |
| 26 | 26 | 0.418 |
| 27 | 27 | 0.703 |
| 28 | 28 | 0.166 |
| 29 | 29 | 0.743 |
| 3 | 3 | 0.656 |
| 30 | 30 | 0.617 |
| 31 | 31 | 0.92 |
| 32 | 32 | 5.89085e-11 |
| 33 | 33 | 0.971 |
| 34 | 34 | 0.989 |
| 35 | 35 | 0.418 |
| 36 | 36 | 0.0543 |
| 37 | 37 | 0.893 |
| 38 | 38 | 0.385 |
| 39 | 39 | 0.658 |
| 4 | 4 | 0.145 |
| 40 | 40 | 0.685 |
| 41 | 41 | 0.0073 |
| 42 | 42 | 0.329 |
| 43 | 43 | 0.274 |
| 44 | 44 | 0.659 |
| 45 | 45 | 0.185 |
| 46 | 46 | 0.323 |
| 47 | 47 | 0.607 |
| 48 | 48 | 0.66 |
| 49 | 49 | 0.107 |
| 5 | 5 | 0.181 |
| 50 | 50 | 0.672 |
| 51 | 51 | 0.83 |
| 52 | 52 | 0.604 |
| 53 | 53 | 0.125 |
| 54 | 54 | 0.688 |
| 55 | 55 | 0.58 |
| 56 | 56 | 0.761 |
| 57 | 57 | 0.484 |
| 58 | 58 | 0.0859 |
| 59 | 59 | 0.537 |
| 6 | 6 | 0.632 |
| 60 | 60 | 0.15 |
| 61 | 61 | 0.906 |
| 62 | 62 | 0.055 |
| 63 | 63 | 0.625 |
| 64 | 64 | 0.572 |
| 65 | 65 | 0.525 |
| 66 | 66 | 0.611 |
| 67 | 67 | 0.86 |
| 68 | 68 | 0.83 |
| 69 | 69 | 0.709 |
| 7 | 7 | 0.216 |
| 70 | 70 | 0.00106 |
| 71 | 71 | 0.908 |
| 72 | 72 | 0.457 |
| 73 | 73 | 0.123 |
| 74 | 74 | 0.0717 |
| 75 | 75 | 0.42 |
| 76 | 76 | 0.55 |
| 77 | 77 | 0.777 |
| 78 | 78 | 0.271 |
| 79 | 79 | 0.0504 |
| 8 | 8 | 0.809 |
| 80 | 80 | 0.0528 |
| 81 | 81 | 0.486 |
| 82 | 82 | 0.121 |
| 83 | 83 | 0.987 |
| 84 | 84 | 0.622 |
| 85 | 85 | 0.285 |
| 86 | 86 | 0.578 |
| 87 | 87 | 0.0809 |
| 88 | 88 | 0.532 |
| 89 | 89 | 0.646 |
| 9 | 9 | 0.91 |
| 90 | 90 | 0.576 |
| 91 | 91 | 0.513 |
| 92 | 92 | 0.288 |
| 93 | 93 | 0.0751 |
| 94 | 94 | 0.51 |
| 95 | 95 | 0.257 |
| 96 | 96 | 0.061 |
| 97 | 97 | 0.905 |
| 98 | 98 | 0.174 |
| 99 | 99 | 6.63608e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12007
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002504 (enteric smooth muscle cell)
1000279 (smooth muscle cell of large intestine)
1000280 (smooth muscle cell of colon)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0000059 (large intestine)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000180 (human smooth muscle cell of intestine sample)
0000181 (human smooth muscle of colon sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
