FF:10633-108I3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005793 | ||
| | |accession_numbers=CAGE;DRX007904;DRR008776;DRZ000201;DRZ001586;DRZ011551;DRZ012936 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0101664,FF:0101670 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100224,FF:0101120 | |fonse_cell_line=FF:0100224,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100224,FF:0101120 | |fonse_cell_line_closure=FF:0100224,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10633-108I3 | |id=FF:10633-108I3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101670 | ||
|is_obsolete= | |||
|library_id=CNhs11742 | |||
|library_id_phase_based=2:CNhs11742 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10633 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10633 | |||
|name=hepatoblastoma cell line:HuH-6 | |name=hepatoblastoma cell line:HuH-6 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11742,LSID819,release009,COMPLETED | |profile_hcage=CNhs11742,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.335449775449978,0,-0.160318030086386,0,0.016247181133151,0.287764880651322,0,0,0,0.335449775449978,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.237491879181921,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0218251707589763,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.335449775449978,-0.0969923612426051,0,0,0.425090041012303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00846117877100933,0,0,0,0,0,0,0,0,0,0,0.352912699373516,0.0500194314168315,0,0,0,0.335449775449978,0.554682604308827,0.187881776972371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,0.215124325731973,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.554682604308827,0,0.335449775449978,0.335449775449978,0,0,0,0,0,0,0,0,0.275254792939836,0,0.178631736794525,0.609288856699756,0,0,0.559738894728346,0,0,0,0,0.5224336682254,0,0.5224336682254,0.5224336682254,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.335449775449978,0,0,-0.305472230898407,0,0.202143938462104,0.454089407148032,0,0,0,0,-0.270240669334324,0,-0.120879483793741,0.252729607126561,0,-0.362620698464996,0.288645116557598,0,0,0,-0.604307182190975,-0.68292913794291,0,0,-0.121779851751874,-0.01362473083567,0,0,-0.391044581551635,0,0.158745130861382,-0.248868050382253,0,0.0434003180893305,0,0,0,0,0,0,0,0,0,0,0,0.277956308628541,0.00846117877100933,0,0,0.335449775449978,0,-0.236240976813951,0,0,-0.0378363805065886,-0.0152862378468804,0.0503341322188295,1.32640495132253,0,-0.302389727009913,-0.00999852718244456,0.528027178629903,-0.8780733087367,-0.147401849371139,-0.189981719549847,0,-0.461588021000005,0.116260940252826,0.0100296193791391,-0.0157841052068157,0.126915221519284,-0.397318739929446,-0.186826427873275,0.335449775449978,0.335449775449978,0,-0.112425831690896,0,0,-0.154664939026795,0.207928703892375,-0.503262548750725,-0.0592644493818165,0.179663772253389,0.15551202212378,0.504594358879932,-0.457436452896595,-0.0511922210653525,0.260555203453514,0,0,0.0692510716602437,0.0218064451485757,0.274205107371787,0.48625044619846,0,0.477667436388925,-0.0683442610773682,0.167724887724989,-0.2853913151856,0.31574016252557,0,0,0.255312537486246,0,0,0,0,0,0.0977233840943514,-0.0170584748047661,0.601234206802113,0,0.156294640905642,0,0.02907289742068,0,-0.191226717851593,-0.146009897457394,-0.298074152361292,0.366310439307978,0,0.172385521755248,-0.174228200722713,0.197945198617782,-0.422394805391737,-0.0584468268118252,0.283194126883729,0.125709116607333,0.352912699373516,0.855533204174988,0,-0.0881268324752877,0,-0.88354475051838,-0.679498131621524,0.121756299762278,0.284781764632676,0.335449775449978,-0.0768723164227378,0,0.379963030692986,0,-0.35753246244147,-0.54043375147324,0.394800393776972,-0.496614676696539,0,-0.191871722545523,-0.788130937773974,0,-0.0463987522385103,-0.0214477663651444,0,-0.150367083334639,0.0551080327106448,0.282433437633666,0.0287354310457944,0,-0.137362202843124,0,0,-0.261479617469158,-0.235476037764389,0,0.565598664368026,0.35244198398651,0.455901173283815,0.636832925788293,0,0,0.456376281384415,0.0607542472728104,0,0.71222528228605,-0.0782003540977454,0.588240560857344,-0.253326341486756,-0.070153404751998,-0.108622809454255,0,0,-0.177527765965176,0,-0.141597552655978,0,0,-0.249881296598824,-0.116628112990133,0,0,0,-0.0275408028327752,0,-0.0589565109853561,0,0,0,0,0,0.271399137697848,0.785503552240081,0,0,0,0,0,0,0,-0.129406115216345,0,0,-1.2568810633697,-0.0342552785692398,-0.12301741567642,0,0,0,0,0.119726372896504,0.132213213355254,0,-0.131862706497632,0,0.167724887724989,0,0,0.249308785660767,0,0,0.167724887724989,0,-0.057730457053664,-0.26186695834425,0,0,0,0.375763553944743,0,0,0,0,-0.239915846313778,0,0,0,0,-0.189633409408113,-0.0815818795468414,0,0.28815295764776,-0.298531804077361,0.690473270550502,0,0,0.261086536435513,0,0,0.17207956318273,0,0,-0.0209247759461169,0,0,0,0,0.5224336682254,0,0.74733038580015,0.103948918541259,0,0,0,0,0,0,0,0,0,0,-0.698745012639747,-0.0922240566585104,0,0,0,0,0,0,0,0.237110811033797,-0.142223977942236,0,0,0,0,0,0,0,0,0.281378059559985,0,0,0.5224336682254,0,0,-0.0969923612426051,0,0,0,0,0.575529761302645,0,0,0.375355823353019,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212130689414531,0.016247181133151,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.729293383568502,0,-0.160318030086386,0.335449775449978,0,0,0,0,0,0.167724887724989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335562582781625,0,-0.28720751597291,-0.123202864573785,0,0,-0.0649034649080525,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.237491879181921,0,0.167724887724989,0.430400858424874,0,0,0,0,0,0,0.038382137116557,-0.0220035657104474,-0.039707915585663,0,0,0,0.113339315242534,0,0,0,0.335449775449978,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335449775449978,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.133713524449572,0,0,0,0,0,0,0,0,0,0.335449775449978,0,0,0,0,0,0,0.2612168341127,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335449775449978,0,0,0,0,0,0,0,0,0,0,0,-0.0699790915004164,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0280703742903121,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268823059936895,0,0,0.226098408613648,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0352984490200202,0.215124325731973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=180.00225 | |rna_weight_ug=180.00225 | ||
|sample_age=1 | |sample_age=1 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1367 | |sample_cell_catalog=RCB1367 | ||
|sample_cell_line=HuH-6 | |sample_cell_line=HuH-6 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.11688235792156e-258!GO:0043226;organelle;9.73233166373664e-220!GO:0043229;intracellular organelle;1.42806821800054e-218!GO:0043227;membrane-bound organelle;2.06267620483955e-213!GO:0043231;intracellular membrane-bound organelle;5.70237024378153e-213!GO:0005737;cytoplasm;4.35008090034648e-152!GO:0044422;organelle part;1.45137115270448e-141!GO:0044446;intracellular organelle part;2.11941833905905e-139!GO:0044237;cellular metabolic process;2.07547020328492e-115!GO:0005634;nucleus;3.19766816521494e-113!GO:0044238;primary metabolic process;8.37725493308258e-110!GO:0044444;cytoplasmic part;7.89563967032211e-100!GO:0043170;macromolecule metabolic process;5.76545411417457e-98!GO:0032991;macromolecular complex;1.42025690046275e-90!GO:0003723;RNA binding;2.70699960087919e-83!GO:0044428;nuclear part;1.1673489326685e-81!GO:0043233;organelle lumen;1.38341384239502e-81!GO:0031974;membrane-enclosed lumen;1.38341384239502e-81!GO:0030529;ribonucleoprotein complex;6.47789839435931e-81!GO:0005515;protein binding;3.55698160278953e-64!GO:0043283;biopolymer metabolic process;9.03456818247351e-59!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.70972563513166e-58!GO:0006396;RNA processing;6.69798149087977e-58!GO:0005739;mitochondrion;2.45925509797758e-57!GO:0010467;gene expression;3.71693949902117e-56!GO:0031981;nuclear lumen;4.97962841513957e-53!GO:0016071;mRNA metabolic process;1.43193374384019e-45!GO:0043228;non-membrane-bound organelle;1.35266792547975e-44!GO:0043232;intracellular non-membrane-bound organelle;1.35266792547975e-44!GO:0043234;protein complex;1.78876915180632e-44!GO:0006412;translation;1.78876915180632e-44!GO:0016043;cellular component organization and biogenesis;3.37191864121648e-44!GO:0019538;protein metabolic process;3.56604022299589e-44!GO:0003676;nucleic acid binding;9.22052966737627e-44!GO:0005840;ribosome;1.39934514485343e-42!GO:0044267;cellular protein metabolic process;1.72056627309935e-40!GO:0008380;RNA splicing;1.9704301415117e-40!GO:0044260;cellular macromolecule metabolic process;4.49058725941065e-40!GO:0044249;cellular biosynthetic process;3.04977616475474e-38!GO:0006259;DNA metabolic process;6.90673146333212e-38!GO:0009058;biosynthetic process;1.46216498992344e-37!GO:0006397;mRNA processing;2.4213331437865e-37!GO:0033036;macromolecule localization;9.643131983889e-37!GO:0044429;mitochondrial part;2.29519204341456e-36!GO:0006996;organelle organization and biogenesis;3.68158009107745e-36!GO:0003735;structural constituent of ribosome;8.43701733207584e-36!GO:0031090;organelle membrane;3.82577371401164e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.8691144867129e-35!GO:0033279;ribosomal subunit;9.79242556318563e-35!GO:0015031;protein transport;5.14986983133801e-34!GO:0065003;macromolecular complex assembly;1.53276940926438e-33!GO:0031967;organelle envelope;4.44669108347598e-32!GO:0016070;RNA metabolic process;5.07754699652693e-32!GO:0031975;envelope;9.07761039975933e-32!GO:0008104;protein localization;1.27318913549824e-31!GO:0007049;cell cycle;3.7369235232225e-31!GO:0009059;macromolecule biosynthetic process;4.89537608730946e-31!GO:0045184;establishment of protein localization;6.13527693860174e-31!GO:0005654;nucleoplasm;1.44711310713436e-30!GO:0046907;intracellular transport;9.16586575997024e-30!GO:0022607;cellular component assembly;2.61771802296812e-29!GO:0005681;spliceosome;1.01393173062094e-28!GO:0005829;cytosol;7.97766393348196e-28!GO:0000166;nucleotide binding;5.22719918588672e-27!GO:0044451;nucleoplasm part;6.54599072363207e-26!GO:0005730;nucleolus;3.71640869040209e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.9975636729156e-25!GO:0006886;intracellular protein transport;4.8211445436344e-24!GO:0005694;chromosome;1.81627058976271e-23!GO:0022402;cell cycle process;4.1684409650334e-23!GO:0006974;response to DNA damage stimulus;4.60473133598546e-22!GO:0022618;protein-RNA complex assembly;3.63126370942425e-21!GO:0019866;organelle inner membrane;6.76732541827813e-21!GO:0000278;mitotic cell cycle;1.13793886723691e-20!GO:0044445;cytosolic part;2.32075407259958e-20!GO:0005740;mitochondrial envelope;2.32075407259958e-20!GO:0051276;chromosome organization and biogenesis;2.70472662126225e-20!GO:0044427;chromosomal part;3.31101485411785e-20!GO:0031980;mitochondrial lumen;5.25597015249049e-20!GO:0005759;mitochondrial matrix;5.25597015249049e-20!GO:0015935;small ribosomal subunit;3.71251809794796e-19!GO:0031966;mitochondrial membrane;4.32333625658255e-19!GO:0016874;ligase activity;8.06199946123886e-19!GO:0005743;mitochondrial inner membrane;9.0056589714778e-19!GO:0044265;cellular macromolecule catabolic process;1.29232378845405e-18!GO:0006457;protein folding;1.49608328185143e-18!GO:0032559;adenyl ribonucleotide binding;2.59280779666659e-18!GO:0005524;ATP binding;3.86798764066897e-18!GO:0006281;DNA repair;4.91976088266679e-18!GO:0030554;adenyl nucleotide binding;5.5004889976056e-18!GO:0051649;establishment of cellular localization;1.17676554010926e-17!GO:0051641;cellular localization;1.98593086028789e-17!GO:0051301;cell division;2.09654800952931e-17!GO:0044248;cellular catabolic process;3.03260307038163e-17!GO:0032553;ribonucleotide binding;4.43393778660464e-17!GO:0032555;purine ribonucleotide binding;4.43393778660464e-17!GO:0017111;nucleoside-triphosphatase activity;4.54745823292458e-17!GO:0016462;pyrophosphatase activity;4.54745823292458e-17!GO:0006512;ubiquitin cycle;5.01995957198583e-17!GO:0043285;biopolymer catabolic process;5.26433021342136e-17!GO:0017076;purine nucleotide binding;5.33308195563309e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.98175753045374e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;8.37674727039957e-17!GO:0006119;oxidative phosphorylation;8.50424616976209e-17!GO:0015934;large ribosomal subunit;9.1740579276989e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.00263093910136e-16!GO:0008135;translation factor activity, nucleic acid binding;1.76374566899132e-16!GO:0009719;response to endogenous stimulus;2.44355030354969e-16!GO:0006323;DNA packaging;5.47405124260466e-16!GO:0016887;ATPase activity;7.09163061655225e-16!GO:0044455;mitochondrial membrane part;1.01844313638877e-15!GO:0000087;M phase of mitotic cell cycle;1.16889245162339e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.16889245162339e-15!GO:0000375;RNA splicing, via transesterification reactions;1.16889245162339e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.16889245162339e-15!GO:0009057;macromolecule catabolic process;1.19954914681667e-15!GO:0042623;ATPase activity, coupled;1.69156171817137e-15!GO:0022403;cell cycle phase;1.98967076477132e-15!GO:0007067;mitosis;2.5262790973022e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.29944548955606e-15!GO:0006260;DNA replication;3.9206830944232e-15!GO:0019941;modification-dependent protein catabolic process;7.09630457362311e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.09630457362311e-15!GO:0042254;ribosome biogenesis and assembly;7.45841090828095e-15!GO:0044257;cellular protein catabolic process;7.56518085297163e-15!GO:0051082;unfolded protein binding;7.59895121795574e-15!GO:0016604;nuclear body;8.23224067295813e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.14439553429199e-14!GO:0004386;helicase activity;3.32783057624396e-14!GO:0012505;endomembrane system;8.46904657865181e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.07849615255078e-13!GO:0000785;chromatin;1.08377700499246e-13!GO:0031965;nuclear membrane;1.20879580557322e-13!GO:0006913;nucleocytoplasmic transport;1.43805000597293e-13!GO:0048770;pigment granule;1.64980504017669e-13!GO:0042470;melanosome;1.64980504017669e-13!GO:0006605;protein targeting;2.38990565449708e-13!GO:0051169;nuclear transport;2.80347573709368e-13!GO:0051186;cofactor metabolic process;3.13956130361724e-13!GO:0016607;nuclear speck;3.97615287160087e-13!GO:0008026;ATP-dependent helicase activity;5.9882457166194e-13!GO:0000279;M phase;9.64829929762365e-13!GO:0044453;nuclear membrane part;1.12462662019254e-12!GO:0006413;translational initiation;1.37824013503498e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.74229626511786e-12!GO:0008134;transcription factor binding;1.85083247458163e-12!GO:0003743;translation initiation factor activity;2.30309914009774e-12!GO:0006399;tRNA metabolic process;2.92844058471478e-12!GO:0006333;chromatin assembly or disassembly;2.92844058471478e-12!GO:0006403;RNA localization;2.96228703719146e-12!GO:0005746;mitochondrial respiratory chain;3.9538255517255e-12!GO:0050657;nucleic acid transport;5.07213014053819e-12!GO:0051236;establishment of RNA localization;5.07213014053819e-12!GO:0050658;RNA transport;5.07213014053819e-12!GO:0030163;protein catabolic process;5.49375564704024e-12!GO:0005643;nuclear pore;5.66401311179995e-12!GO:0005635;nuclear envelope;6.5534271968001e-12!GO:0051726;regulation of cell cycle;7.53219871496085e-12!GO:0006446;regulation of translational initiation;8.18733042044331e-12!GO:0043412;biopolymer modification;8.18733042044331e-12!GO:0050136;NADH dehydrogenase (quinone) activity;8.18733042044331e-12!GO:0003954;NADH dehydrogenase activity;8.18733042044331e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.18733042044331e-12!GO:0016568;chromatin modification;9.27732170947266e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.42310100582711e-12!GO:0000074;regulation of progression through cell cycle;1.15726543270449e-11!GO:0005761;mitochondrial ribosome;1.82996118651124e-11!GO:0000313;organellar ribosome;1.82996118651124e-11!GO:0006732;coenzyme metabolic process;2.51555506979987e-11!GO:0050794;regulation of cellular process;3.57950285284561e-11!GO:0005783;endoplasmic reticulum;7.62562433361007e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.91174984703226e-11!GO:0004812;aminoacyl-tRNA ligase activity;7.91174984703226e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.91174984703226e-11!GO:0048193;Golgi vesicle transport;1.12456218155604e-10!GO:0009056;catabolic process;1.18293980243301e-10!GO:0046930;pore complex;2.1222008093661e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.66451504338347e-10!GO:0051028;mRNA transport;3.30212472463551e-10!GO:0043038;amino acid activation;4.70522919243036e-10!GO:0006418;tRNA aminoacylation for protein translation;4.70522919243036e-10!GO:0043039;tRNA aminoacylation;4.70522919243036e-10!GO:0006364;rRNA processing;5.12490863769195e-10!GO:0042775;organelle ATP synthesis coupled electron transport;5.36286434542887e-10!GO:0042773;ATP synthesis coupled electron transport;5.36286434542887e-10!GO:0030964;NADH dehydrogenase complex (quinone);5.43651219092031e-10!GO:0045271;respiratory chain complex I;5.43651219092031e-10!GO:0005747;mitochondrial respiratory chain complex I;5.43651219092031e-10!GO:0044432;endoplasmic reticulum part;6.37338734023238e-10!GO:0006464;protein modification process;7.53981176753226e-10!GO:0043687;post-translational protein modification;8.07496625613195e-10!GO:0016072;rRNA metabolic process;8.87143683529354e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.29592725020589e-09!GO:0065004;protein-DNA complex assembly;1.33780682997696e-09!GO:0019222;regulation of metabolic process;3.45653292436952e-09!GO:0017038;protein import;3.45653292436952e-09!GO:0006261;DNA-dependent DNA replication;3.5585341956045e-09!GO:0008565;protein transporter activity;4.84216314071225e-09!GO:0016192;vesicle-mediated transport;4.9733229423008e-09!GO:0005793;ER-Golgi intermediate compartment;6.07219748042996e-09!GO:0000502;proteasome complex (sensu Eukaryota);6.69907133288198e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.03106639827671e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.27972760435369e-09!GO:0006366;transcription from RNA polymerase II promoter;8.50279455026039e-09!GO:0065002;intracellular protein transport across a membrane;1.06559955924425e-08!GO:0000245;spliceosome assembly;1.13842884397015e-08!GO:0006461;protein complex assembly;1.41628163686509e-08!GO:0012501;programmed cell death;1.74182308838389e-08!GO:0005667;transcription factor complex;1.74838866302238e-08!GO:0015630;microtubule cytoskeleton;1.7743209007578e-08!GO:0006915;apoptosis;2.0190077576901e-08!GO:0006334;nucleosome assembly;5.22900318925752e-08!GO:0000775;chromosome, pericentric region;5.30111689425541e-08!GO:0043566;structure-specific DNA binding;5.42170884384421e-08!GO:0031497;chromatin assembly;6.86048267828011e-08!GO:0005794;Golgi apparatus;7.04114833089282e-08!GO:0003712;transcription cofactor activity;8.70335563839645e-08!GO:0009055;electron carrier activity;9.9627101869983e-08!GO:0050789;regulation of biological process;1.22893606028214e-07!GO:0005819;spindle;1.25530573171086e-07!GO:0008219;cell death;1.25530573171086e-07!GO:0016265;death;1.25530573171086e-07!GO:0006082;organic acid metabolic process;1.4229915853704e-07!GO:0019752;carboxylic acid metabolic process;1.52076068351076e-07!GO:0031323;regulation of cellular metabolic process;1.60439697541788e-07!GO:0008639;small protein conjugating enzyme activity;2.58831561469379e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.72585443528626e-07!GO:0006752;group transfer coenzyme metabolic process;2.8407275219685e-07!GO:0005768;endosome;3.0553659208e-07!GO:0043623;cellular protein complex assembly;3.31611596779562e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.36365516789383e-07!GO:0051329;interphase of mitotic cell cycle;4.6673225086349e-07!GO:0004842;ubiquitin-protein ligase activity;5.12237582011622e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.16823147611049e-07!GO:0005813;centrosome;5.50921873043991e-07!GO:0006350;transcription;6.38382582735143e-07!GO:0006402;mRNA catabolic process;6.43446386196679e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.34236057125359e-07!GO:0003697;single-stranded DNA binding;1.0032556804069e-06!GO:0032446;protein modification by small protein conjugation;1.08544868128429e-06!GO:0006520;amino acid metabolic process;1.11549220480033e-06!GO:0005789;endoplasmic reticulum membrane;1.2266824359925e-06!GO:0051188;cofactor biosynthetic process;1.28997887916736e-06!GO:0051168;nuclear export;1.51424508974365e-06!GO:0019787;small conjugating protein ligase activity;1.51811159205077e-06!GO:0006163;purine nucleotide metabolic process;1.5638980001107e-06!GO:0003724;RNA helicase activity;1.73076498414978e-06!GO:0005815;microtubule organizing center;1.73900268648247e-06!GO:0015986;ATP synthesis coupled proton transport;1.95638160979246e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.95638160979246e-06!GO:0016567;protein ubiquitination;1.95638160979246e-06!GO:0006606;protein import into nucleus;2.21163982383207e-06!GO:0016787;hydrolase activity;2.30069034423644e-06!GO:0003690;double-stranded DNA binding;2.54151353436236e-06!GO:0009259;ribonucleotide metabolic process;3.05336333830015e-06!GO:0051170;nuclear import;3.31499186870288e-06!GO:0008168;methyltransferase activity;3.50407635143148e-06!GO:0008094;DNA-dependent ATPase activity;3.65535882170601e-06!GO:0006164;purine nucleotide biosynthetic process;3.7007403179729e-06!GO:0016564;transcription repressor activity;3.82991473492815e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.91715735422687e-06!GO:0010468;regulation of gene expression;4.95362548802783e-06!GO:0006401;RNA catabolic process;4.95362548802783e-06!GO:0000075;cell cycle checkpoint;5.02958228101201e-06!GO:0016741;transferase activity, transferring one-carbon groups;5.42173242858621e-06!GO:0019829;cation-transporting ATPase activity;5.42173242858621e-06!GO:0009108;coenzyme biosynthetic process;5.86056957998071e-06!GO:0051325;interphase;6.39118549488367e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.30167666679798e-06!GO:0016740;transferase activity;8.32397831941689e-06!GO:0045259;proton-transporting ATP synthase complex;8.73782452455603e-06!GO:0006888;ER to Golgi vesicle-mediated transport;9.38361374557012e-06!GO:0009260;ribonucleotide biosynthetic process;9.76594862641286e-06!GO:0009150;purine ribonucleotide metabolic process;9.99792865748813e-06!GO:0006754;ATP biosynthetic process;1.00177553873249e-05!GO:0006753;nucleoside phosphate metabolic process;1.00177553873249e-05!GO:0006302;double-strand break repair;1.15258129773434e-05!GO:0048523;negative regulation of cellular process;1.16376176821345e-05!GO:0046034;ATP metabolic process;1.27555240276808e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.41161934625717e-05!GO:0003682;chromatin binding;1.56306981539682e-05!GO:0009060;aerobic respiration;1.56565942815947e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.62138527979387e-05!GO:0005657;replication fork;1.68152282665557e-05!GO:0044452;nucleolar part;2.01102625410844e-05!GO:0016853;isomerase activity;2.0597387518261e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.07800485300819e-05!GO:0045786;negative regulation of progression through cell cycle;2.07800485300819e-05!GO:0006519;amino acid and derivative metabolic process;2.1355158847967e-05!GO:0016779;nucleotidyltransferase activity;2.15610621284755e-05!GO:0043069;negative regulation of programmed cell death;2.40739250643898e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.40739250643898e-05!GO:0006793;phosphorus metabolic process;2.40797461009402e-05!GO:0006796;phosphate metabolic process;2.40797461009402e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.43988165354741e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.43988165354741e-05!GO:0016881;acid-amino acid ligase activity;2.94599566135163e-05!GO:0000786;nucleosome;3.05120822709265e-05!GO:0003729;mRNA binding;3.0613930650079e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.10710606510327e-05!GO:0003714;transcription corepressor activity;3.18284761009466e-05!GO:0043066;negative regulation of apoptosis;3.34575879640817e-05!GO:0032774;RNA biosynthetic process;3.38743340738973e-05!GO:0042981;regulation of apoptosis;3.63765956263494e-05!GO:0009141;nucleoside triphosphate metabolic process;3.84228462100852e-05!GO:0009308;amine metabolic process;3.93360089775449e-05!GO:0051246;regulation of protein metabolic process;3.97482079682397e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.07726731038123e-05!GO:0009144;purine nucleoside triphosphate metabolic process;4.07726731038123e-05!GO:0006351;transcription, DNA-dependent;4.09448339861979e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.27480677432782e-05!GO:0043067;regulation of programmed cell death;4.43409702044671e-05!GO:0005788;endoplasmic reticulum lumen;4.57827928453674e-05!GO:0003677;DNA binding;4.95718330226829e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.00989006093091e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.00989006093091e-05!GO:0000151;ubiquitin ligase complex;5.82874903491598e-05!GO:0031324;negative regulation of cellular metabolic process;6.12551982447144e-05!GO:0006613;cotranslational protein targeting to membrane;6.48659258606605e-05!GO:0008186;RNA-dependent ATPase activity;6.59805916447477e-05!GO:0005762;mitochondrial large ribosomal subunit;7.29838264370178e-05!GO:0000315;organellar large ribosomal subunit;7.29838264370178e-05!GO:0003899;DNA-directed RNA polymerase activity;7.51935673634668e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.68323564099959e-05!GO:0000314;organellar small ribosomal subunit;8.41272956631586e-05!GO:0005763;mitochondrial small ribosomal subunit;8.41272956631586e-05!GO:0007051;spindle organization and biogenesis;8.6549540207207e-05!GO:0051187;cofactor catabolic process;0.000109597520667209!GO:0016859;cis-trans isomerase activity;0.000116954837352235!GO:0009892;negative regulation of metabolic process;0.000125233045905886!GO:0042802;identical protein binding;0.00013357205167139!GO:0048519;negative regulation of biological process;0.000143163785519672!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000147557916145437!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000156375805871081!GO:0051052;regulation of DNA metabolic process;0.000158833758913837!GO:0046983;protein dimerization activity;0.000162021973188927!GO:0030120;vesicle coat;0.000181199555913584!GO:0030662;coated vesicle membrane;0.000181199555913584!GO:0006807;nitrogen compound metabolic process;0.000186154200352966!GO:0005769;early endosome;0.000199256391305105!GO:0006730;one-carbon compound metabolic process;0.000201413968129237!GO:0004004;ATP-dependent RNA helicase activity;0.000204587068479148!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000204587068479148!GO:0006383;transcription from RNA polymerase III promoter;0.000206380465471563!GO:0043021;ribonucleoprotein binding;0.000207744986903412!GO:0006405;RNA export from nucleus;0.000208464779918951!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000208464779918951!GO:0045333;cellular respiration;0.000210649180000145!GO:0000776;kinetochore;0.00022597454862358!GO:0045449;regulation of transcription;0.000228781799401603!GO:0006338;chromatin remodeling;0.000233594225541033!GO:0019899;enzyme binding;0.000233635078769487!GO:0009109;coenzyme catabolic process;0.00029251202958261!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000309623275062242!GO:0006099;tricarboxylic acid cycle;0.000309969174598443!GO:0046356;acetyl-CoA catabolic process;0.000309969174598443!GO:0065007;biological regulation;0.000310460428673712!GO:0009117;nucleotide metabolic process;0.00031922967610285!GO:0007005;mitochondrion organization and biogenesis;0.000319636581465376!GO:0048475;coated membrane;0.000325507587534167!GO:0030117;membrane coat;0.000325507587534167!GO:0016363;nuclear matrix;0.000345770941945887!GO:0008022;protein C-terminus binding;0.000345911023102438!GO:0006084;acetyl-CoA metabolic process;0.000362452580342506!GO:0044440;endosomal part;0.000378637828722697!GO:0010008;endosome membrane;0.000378637828722697!GO:0032508;DNA duplex unwinding;0.000399611859586634!GO:0032392;DNA geometric change;0.000399611859586634!GO:0016310;phosphorylation;0.000411257143682224!GO:0016563;transcription activator activity;0.000413287877944413!GO:0048037;cofactor binding;0.000439426757986047!GO:0016125;sterol metabolic process;0.000442405343446759!GO:0051427;hormone receptor binding;0.000456097752263611!GO:0007010;cytoskeleton organization and biogenesis;0.00046944429137819!GO:0005048;signal sequence binding;0.000495071059264591!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00050699914146477!GO:0003678;DNA helicase activity;0.000545258856489747!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000581827899649598!GO:0008033;tRNA processing;0.000586455648321618!GO:0007093;mitotic cell cycle checkpoint;0.000621136669432029!GO:0007052;mitotic spindle organization and biogenesis;0.000650243557421076!GO:0000049;tRNA binding;0.00065216487738871!GO:0006916;anti-apoptosis;0.000663962816289773!GO:0016126;sterol biosynthetic process;0.000693448188429466!GO:0008139;nuclear localization sequence binding;0.000711775851903138!GO:0045454;cell redox homeostasis;0.000732236728921015!GO:0048471;perinuclear region of cytoplasm;0.000760579332300325!GO:0030036;actin cytoskeleton organization and biogenesis;0.000765435720504838!GO:0031072;heat shock protein binding;0.000766675960281721!GO:0043681;protein import into mitochondrion;0.000771502377804118!GO:0035257;nuclear hormone receptor binding;0.000846627257504518!GO:0006268;DNA unwinding during replication;0.000847282555156733!GO:0000725;recombinational repair;0.000853331386556961!GO:0000724;double-strand break repair via homologous recombination;0.000853331386556961!GO:0051789;response to protein stimulus;0.000889172346789435!GO:0006986;response to unfolded protein;0.000889172346789435!GO:0006310;DNA recombination;0.000907049063791918!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000929144598370651!GO:0008092;cytoskeletal protein binding;0.000961227778591497!GO:0007059;chromosome segregation;0.00101340517296056!GO:0031982;vesicle;0.00103078716111531!GO:0031988;membrane-bound vesicle;0.00103078716111531!GO:0006284;base-excision repair;0.00105264505135122!GO:0016197;endosome transport;0.00109456191674973!GO:0008652;amino acid biosynthetic process;0.00121322851409345!GO:0000792;heterochromatin;0.00127422608496666!GO:0006355;regulation of transcription, DNA-dependent;0.00130338164354845!GO:0000059;protein import into nucleus, docking;0.00131286077390036!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00131843485177311!GO:0033116;ER-Golgi intermediate compartment membrane;0.00139911078062861!GO:0016272;prefoldin complex;0.00145044144010407!GO:0019843;rRNA binding;0.00145596222004873!GO:0006612;protein targeting to membrane;0.00148182923438117!GO:0006695;cholesterol biosynthetic process;0.00149183117372078!GO:0040029;regulation of gene expression, epigenetic;0.0014997920028681!GO:0031252;leading edge;0.00151360155737555!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00152395735712847!GO:0016491;oxidoreductase activity;0.00154051208012005!GO:0051920;peroxiredoxin activity;0.00156542560193765!GO:0050662;coenzyme binding;0.00171523925246938!GO:0030867;rough endoplasmic reticulum membrane;0.00172905483722608!GO:0006270;DNA replication initiation;0.00187751915798257!GO:0016023;cytoplasmic membrane-bound vesicle;0.00192954707373258!GO:0006950;response to stress;0.00194968410354092!GO:0006595;polyamine metabolic process;0.00200481997504041!GO:0003684;damaged DNA binding;0.00210020293356976!GO:0008654;phospholipid biosynthetic process;0.00216405789163893!GO:0007006;mitochondrial membrane organization and biogenesis;0.00216507613023762!GO:0003713;transcription coactivator activity;0.00242024263966689!GO:0022890;inorganic cation transmembrane transporter activity;0.00247113115162941!GO:0051287;NAD binding;0.00248239709804598!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00253133887823773!GO:0005684;U2-dependent spliceosome;0.00253626032975856!GO:0031410;cytoplasmic vesicle;0.0025599066727364!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00265276881982204!GO:0008203;cholesterol metabolic process;0.00268490651784953!GO:0008250;oligosaccharyl transferase complex;0.00271104691841755!GO:0016044;membrane organization and biogenesis;0.00272281550738036!GO:0030029;actin filament-based process;0.00273081819193829!GO:0016481;negative regulation of transcription;0.00276044941629731!GO:0065009;regulation of a molecular function;0.00302754893174803!GO:0005770;late endosome;0.00311817216736536!GO:0004527;exonuclease activity;0.00321587645040496!GO:0006414;translational elongation;0.00331355772780956!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00342574399445611!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00343375342689165!GO:0003746;translation elongation factor activity;0.00356788667189884!GO:0005874;microtubule;0.00358077139254374!GO:0004576;oligosaccharyl transferase activity;0.00373326563481412!GO:0044431;Golgi apparatus part;0.00382009602807163!GO:0051087;chaperone binding;0.0040644039659811!GO:0000922;spindle pole;0.00408394541280914!GO:0006611;protein export from nucleus;0.00425410994628036!GO:0044262;cellular carbohydrate metabolic process;0.0043168931770838!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00452076337503354!GO:0015399;primary active transmembrane transporter activity;0.00452076337503354!GO:0042393;histone binding;0.00498039308837506!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00520123687804836!GO:0008286;insulin receptor signaling pathway;0.00532365360457452!GO:0005798;Golgi-associated vesicle;0.00532365360457452!GO:0001889;liver development;0.00535456143419202!GO:0032259;methylation;0.00554693899712253!GO:0008234;cysteine-type peptidase activity;0.00560081131849714!GO:0048500;signal recognition particle;0.00563156339944751!GO:0030134;ER to Golgi transport vesicle;0.00569745218661505!GO:0009303;rRNA transcription;0.00587694228435919!GO:0046483;heterocycle metabolic process;0.00594732709548203!GO:0051252;regulation of RNA metabolic process;0.00603913642241269!GO:0004518;nuclease activity;0.00606978983267093!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00627520635182811!GO:0000082;G1/S transition of mitotic cell cycle;0.00628543183810092!GO:0007088;regulation of mitosis;0.00631295059499041!GO:0019783;small conjugating protein-specific protease activity;0.00673720838462293!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00685854422190998!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00685854422190998!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00685854422190998!GO:0006406;mRNA export from nucleus;0.00703460462523797!GO:0006818;hydrogen transport;0.0070603857045229!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00707358362193263!GO:0006275;regulation of DNA replication;0.00710520922529855!GO:0004843;ubiquitin-specific protease activity;0.00734966321821033!GO:0006376;mRNA splice site selection;0.00736961804036137!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00736961804036137!GO:0043414;biopolymer methylation;0.00744708089136191!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00770464126040848!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00770464126040848!GO:0007017;microtubule-based process;0.00774109880468321!GO:0009165;nucleotide biosynthetic process;0.00786534045696832!GO:0042770;DNA damage response, signal transduction;0.00787537211794133!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00821770945851038!GO:0006352;transcription initiation;0.00827573264144775!GO:0015992;proton transport;0.00855839354621297!GO:0031570;DNA integrity checkpoint;0.00857515610776564!GO:0030127;COPII vesicle coat;0.00882801138708323!GO:0012507;ER to Golgi transport vesicle membrane;0.00882801138708323!GO:0031647;regulation of protein stability;0.00884040511387671!GO:0018196;peptidyl-asparagine modification;0.00889122091523564!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00889122091523564!GO:0003711;transcription elongation regulator activity;0.00890496504893224!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0089538503175368!GO:0051053;negative regulation of DNA metabolic process;0.00918818816226784!GO:0005791;rough endoplasmic reticulum;0.00924996166815148!GO:0008610;lipid biosynthetic process;0.00945742163171738!GO:0005876;spindle microtubule;0.00953200878448772!GO:0009081;branched chain family amino acid metabolic process;0.00986341435406233!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0100573409773069!GO:0015002;heme-copper terminal oxidase activity;0.0100573409773069!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0100573409773069!GO:0004129;cytochrome-c oxidase activity;0.0100573409773069!GO:0046982;protein heterodimerization activity;0.010140781765238!GO:0006626;protein targeting to mitochondrion;0.0103118687808496!GO:0006091;generation of precursor metabolites and energy;0.0103694167014909!GO:0004674;protein serine/threonine kinase activity;0.0104073017224432!GO:0006891;intra-Golgi vesicle-mediated transport;0.0105022898270137!GO:0005732;small nucleolar ribonucleoprotein complex;0.0106945370809698!GO:0008276;protein methyltransferase activity;0.0110816976068903!GO:0016835;carbon-oxygen lyase activity;0.0112515179047191!GO:0004221;ubiquitin thiolesterase activity;0.0116433816121073!GO:0033673;negative regulation of kinase activity;0.0121539403857642!GO:0006469;negative regulation of protein kinase activity;0.0121539403857642!GO:0006979;response to oxidative stress;0.0121539403857642!GO:0003702;RNA polymerase II transcription factor activity;0.0126653823218858!GO:0051098;regulation of binding;0.0127664753510057!GO:0016836;hydro-lyase activity;0.0128619159808159!GO:0006354;RNA elongation;0.0129988050956937!GO:0030145;manganese ion binding;0.0131382182708147!GO:0006607;NLS-bearing substrate import into nucleus;0.0131442928620948!GO:0015631;tubulin binding;0.0131848923425867!GO:0048487;beta-tubulin binding;0.0136154454075279!GO:0051348;negative regulation of transferase activity;0.0141181492218593!GO:0051101;regulation of DNA binding;0.0144730890608101!GO:0016829;lyase activity;0.0145353498111206!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0149253480127597!GO:0000096;sulfur amino acid metabolic process;0.0150759854926671!GO:0008312;7S RNA binding;0.0151530974840578!GO:0043492;ATPase activity, coupled to movement of substances;0.0154043694237319!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0154481489080658!GO:0030880;RNA polymerase complex;0.0160019806127716!GO:0006596;polyamine biosynthetic process;0.0160601688838656!GO:0005885;Arp2/3 protein complex;0.0160601688838656!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0160860638967151!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0161705832957121!GO:0055083;monovalent inorganic anion homeostasis;0.0161705832957121!GO:0055064;chloride ion homeostasis;0.0161705832957121!GO:0030644;cellular chloride ion homeostasis;0.0161705832957121!GO:0030133;transport vesicle;0.016300411756836!GO:0005839;proteasome core complex (sensu Eukaryota);0.0165977289700768!GO:0015980;energy derivation by oxidation of organic compounds;0.0168395168200175!GO:0042176;regulation of protein catabolic process;0.0173161138317538!GO:0031901;early endosome membrane;0.0175029736309165!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0178232667537173!GO:0030027;lamellipodium;0.0179202848334691!GO:0000086;G2/M transition of mitotic cell cycle;0.0182275345333326!GO:0043407;negative regulation of MAP kinase activity;0.0182297555447465!GO:0016790;thiolester hydrolase activity;0.0182549742715962!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.01861407069391!GO:0045047;protein targeting to ER;0.01861407069391!GO:0043488;regulation of mRNA stability;0.0191884897750229!GO:0043487;regulation of RNA stability;0.0191884897750229!GO:0043022;ribosome binding;0.0193108694415074!GO:0005669;transcription factor TFIID complex;0.0197426832128388!GO:0046426;negative regulation of JAK-STAT cascade;0.0200306048723708!GO:0006839;mitochondrial transport;0.0201811742905694!GO:0019867;outer membrane;0.0204968519143784!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0208193122499624!GO:0000790;nuclear chromatin;0.0212076190914606!GO:0005637;nuclear inner membrane;0.021395673264888!GO:0044255;cellular lipid metabolic process;0.021395673264888!GO:0043596;nuclear replication fork;0.0215797047994644!GO:0000209;protein polyubiquitination;0.0216226363475193!GO:0031968;organelle outer membrane;0.0217166423930261!GO:0006301;postreplication repair;0.0221679089065946!GO:0008629;induction of apoptosis by intracellular signals;0.0224578734917834!GO:0008097;5S rRNA binding;0.0228957324233681!GO:0005832;chaperonin-containing T-complex;0.0241346213349696!GO:0043189;H4/H2A histone acetyltransferase complex;0.0244060161286139!GO:0035267;NuA4 histone acetyltransferase complex;0.0248480267572858!GO:0009066;aspartate family amino acid metabolic process;0.0250365257422263!GO:0043433;negative regulation of transcription factor activity;0.025439841855296!GO:0000139;Golgi membrane;0.0254748700891989!GO:0008156;negative regulation of DNA replication;0.0258046011263705!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0258907700336044!GO:0030139;endocytic vesicle;0.026420861734005!GO:0001832;blastocyst growth;0.0269421476307685!GO:0031625;ubiquitin protein ligase binding;0.0275534679409901!GO:0006541;glutamine metabolic process;0.0278021751638364!GO:0016584;nucleosome positioning;0.0280438351927034!GO:0030658;transport vesicle membrane;0.028050838484961!GO:0005741;mitochondrial outer membrane;0.0282364301790297!GO:0003756;protein disulfide isomerase activity;0.0282386478409181!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0282386478409181!GO:0043624;cellular protein complex disassembly;0.0282543629652159!GO:0004298;threonine endopeptidase activity;0.0289612225175928!GO:0016791;phosphoric monoester hydrolase activity;0.029248990213147!GO:0004003;ATP-dependent DNA helicase activity;0.0302854400247058!GO:0005773;vacuole;0.0308489830272153!GO:0000228;nuclear chromosome;0.0308489830272153!GO:0030659;cytoplasmic vesicle membrane;0.0312932429487583!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0312932429487583!GO:0012506;vesicle membrane;0.0314267057959298!GO:0007050;cell cycle arrest;0.0314425241960534!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0314425241960534!GO:0000428;DNA-directed RNA polymerase complex;0.0314425241960534!GO:0045941;positive regulation of transcription;0.0318629244918345!GO:0001824;blastocyst development;0.0331456011170965!GO:0032200;telomere organization and biogenesis;0.0332595462364445!GO:0000723;telomere maintenance;0.0332595462364445!GO:0006749;glutathione metabolic process;0.0332793485622323!GO:0051716;cellular response to stimulus;0.0350453243680515!GO:0047485;protein N-terminus binding;0.0352258249972494!GO:0035258;steroid hormone receptor binding;0.0361963335660129!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0362316294085573!GO:0005905;coated pit;0.0362589293471368!GO:0051297;centrosome organization and biogenesis;0.0362589293471368!GO:0031023;microtubule organizing center organization and biogenesis;0.0362589293471368!GO:0000077;DNA damage checkpoint;0.0367134595211338!GO:0006066;alcohol metabolic process;0.0367134595211338!GO:0006007;glucose catabolic process;0.0369008855231092!GO:0000339;RNA cap binding;0.0369359937054863!GO:0030132;clathrin coat of coated pit;0.0371134414585403!GO:0009451;RNA modification;0.0371134414585403!GO:0008632;apoptotic program;0.0372884757753587!GO:0006892;post-Golgi vesicle-mediated transport;0.0379005095249205!GO:0007030;Golgi organization and biogenesis;0.0379666736948817!GO:0051100;negative regulation of binding;0.0379725006115704!GO:0045947;negative regulation of translational initiation;0.0388159902749998!GO:0050748;negative regulation of lipoprotein metabolic process;0.0398158100173102!GO:0000123;histone acetyltransferase complex;0.0399983438248223!GO:0043284;biopolymer biosynthetic process;0.0406739953266438!GO:0006650;glycerophospholipid metabolic process;0.0412139129072247!GO:0042769;DNA damage response, detection of DNA damage;0.0416367243742337!GO:0006642;triacylglycerol mobilization;0.0416797548652239!GO:0031124;mRNA 3'-end processing;0.0417622997705822!GO:0005758;mitochondrial intermembrane space;0.0417684777123007!GO:0016311;dephosphorylation;0.0428303055685326!GO:0005862;muscle thin filament tropomyosin;0.0430812169095485!GO:0004239;methionyl aminopeptidase activity;0.0438114040782861!GO:0005938;cell cortex;0.0438774915264939!GO:0006400;tRNA modification;0.0443297863743119!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0447222036887357!GO:0004448;isocitrate dehydrogenase activity;0.0450188729781665!GO:0046474;glycerophospholipid biosynthetic process;0.0454746361620865!GO:0000726;non-recombinational repair;0.045724445771398!GO:0006144;purine base metabolic process;0.046214739620365!GO:0045815;positive regulation of gene expression, epigenetic;0.0465731009812537!GO:0045892;negative regulation of transcription, DNA-dependent;0.046600510058704!GO:0005844;polysome;0.0467554701948489!GO:0005856;cytoskeleton;0.0467554701948489!GO:0005784;translocon complex;0.0470037871315293!GO:0030262;apoptotic nuclear changes;0.0471087821333737!GO:0050749;apolipoprotein E receptor binding;0.0472855797383346!GO:0030663;COPI coated vesicle membrane;0.0474030241078297!GO:0030126;COPI vesicle coat;0.0474030241078297!GO:0022411;cellular component disassembly;0.0475157925253064!GO:0030496;midbody;0.0480608304876618!GO:0031057;negative regulation of histone modification;0.0481019474337518!GO:0035067;negative regulation of histone acetylation;0.0481019474337518!GO:0007346;regulation of progression through mitotic cell cycle;0.0486604629588943!GO:0006417;regulation of translation;0.0493315608089352!GO:0000910;cytokinesis;0.049472161453907 | |||
|sample_id=10633 | |sample_id=10633 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=HNF4A_NR2F1,2:3.02107122772;LEF1_TCF7_TCF7L1,2:2.83966977704;HNF1A:2.61068626893;FOXA2:2.56196584453;FOX{F1,F2,J1}:2.36378658859;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.12098186747;bHLH_family:1.94280388571;SOX{8,9,10}:1.63588078037;POU6F1:1.52674388803;NFY{A,B,C}:1.52456764333;ONECUT1,2:1.51598541077;SNAI1..3:1.51440104956;TFDP1:1.29529672604;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.22397867388;GFI1:1.16355898817;GATA6:1.15765198934;HOX{A6,A7,B6,B7}:1.13880578858;PBX1:1.12782039612;E2F1..5:1.08083334157;ZEB1:1.06296536477;RBPJ:1.04937515738;DBP:1.00666122716;SOX17:0.999082014346;T:0.986608911661;PDX1:0.980044745148;FOX{D1,D2}:0.975172051829;CDC5L:0.955998411031;MYOD1:0.934556065755;STAT5{A,B}:0.928193124987;TBP:0.924999429816;VSX1,2:0.891477534347;PPARG:0.846574681019;NR5A1,2:0.819473000319;POU3F1..4:0.809058380874;POU2F1..3:0.678330847875;FOXP1:0.672621664978;MYB:0.661412354131;ZBTB16:0.658935370661;PITX1..3:0.646835695974;MTF1:0.639146507793;ZFP161:0.635231883248;NKX2-1,4:0.605290299059;TOPORS:0.593873176671;SOX2:0.585479905773;MED-1{core}:0.560168042624;FOXM1:0.555151646293;HOXA9_MEIS1:0.508862337586;NR3C1:0.487371653499;OCT4_SOX2{dimer}:0.457804371711;ZNF143:0.453713044638;RORA:0.450457819876;FOX{I1,J2}:0.437987380431;CUX2:0.431121519894;TFAP2{A,C}:0.426641279293;TFAP2B:0.405704420831;NRF1:0.404503331821;PAX2:0.387354541779;BREu{core}:0.387224184278;TEAD1:0.371968278635;SP1:0.370090540938;PATZ1:0.330563953599;IKZF2:0.323537618333;ATF4:0.317731346707;MTE{core}:0.275125067208;FOXD3:0.242711063887;ATF6:0.220738860033;FOXO1,3,4:0.212108899175;ELK1,4_GABP{A,B1}:0.200645471266;ADNP_IRX_SIX_ZHX:0.194181753727;SOX5:0.188183352252;SREBF1,2:0.162272990189;FOXN1:0.128317478866;CEBPA,B_DDIT3:0.124984370502;HOX{A5,B5}:0.112613825356;FOXQ1:0.0855074737912;ATF2:0.0654206580643;LMO2:0.0553817857162;MAZ:0.0498291089936;AHR_ARNT_ARNT2:0.0454655920726;NKX2-3_NKX2-5:0.0375513891153;YY1:0.0269493809298;TFAP4:0.0168742707328;GATA4:-0.00750783113043;EBF1:-0.0138961591463;NFE2:-0.0179620823017;PRRX1,2:-0.0248872479332;ATF5_CREB3:-0.0379786579824;BPTF:-0.0593651115729;HLF:-0.0742419240488;LHX3,4:-0.087337601329;FOSL2:-0.110024004177;NFIX:-0.110500445706;HIC1:-0.117432482461;MEF2{A,B,C,D}:-0.135645423677;EVI1:-0.138997382051;NHLH1,2:-0.153272144485;NR6A1:-0.154831129397;PAX1,9:-0.167595431132;ESRRA:-0.177431517305;NFKB1_REL_RELA:-0.215312596233;AIRE:-0.223075394012;AR:-0.229607159664;POU1F1:-0.248494621756;FOS_FOS{B,L1}_JUN{B,D}:-0.285153423018;NFIL3:-0.301838997067;RFX1:-0.304116407903;XCPE1{core}:-0.314216556223;REST:-0.322484999876;GTF2I:-0.332823855062;NFE2L2:-0.346607446705;TFCP2:-0.346945540151;EGR1..3:-0.361240097503;NANOG:-0.396296568457;MAFB:-0.40007687573;PAX6:-0.40262566695;HOX{A4,D4}:-0.40353254158;HAND1,2:-0.407273162749;BACH2:-0.41645385902;CREB1:-0.420659166884;ESR1:-0.422672407866;MYFfamily:-0.433443529994;ALX1:-0.447718617167;DMAP1_NCOR{1,2}_SMARC:-0.464883738765;PAX8:-0.466891222244;GFI1B:-0.478121245189;RUNX1..3:-0.483677295841;KLF4:-0.485366233188;NANOG{mouse}:-0.486146298313;XBP1:-0.509812839853;PAX3,7:-0.516840390657;HBP1_HMGB_SSRP1_UBTF:-0.523089955341;HES1:-0.540172246496;STAT2,4,6:-0.542924169302;MZF1:-0.543909054042;POU5F1:-0.552013682148;MYBL2:-0.570376558554;CDX1,2,4:-0.574884600108;SRF:-0.592613633526;GTF2A1,2:-0.600086915098;RFX2..5_RFXANK_RFXAP:-0.626491814068;TLX1..3_NFIC{dimer}:-0.634449146013;EN1,2:-0.647894457888;RXRA_VDR{dimer}:-0.667425164563;RREB1:-0.687071544326;GZF1:-0.723805050243;SPIB:-0.738403908034;JUN:-0.7602958171;SPI1:-0.767350957814;TLX2:-0.773069773364;IRF7:-0.788880514059;TP53:-0.791906194606;ZNF384:-0.808307034357;PRDM1:-0.842938243988;FOXL1:-0.848571463883;NR1H4:-0.876176497824;ZNF148:-0.921108992033;UFEwm:-0.924600347331;ETS1,2:-0.934655203357;NKX3-2:-0.965162917596;GCM1,2:-0.969788188773;ALX4:-0.981473857822;HSF1,2:-1.01246172848;FOXP3:-1.0402341818;TGIF1:-1.06464778692;ZBTB6:-1.10156958674;GLI1..3:-1.11681542314;ELF1,2,4:-1.13679698831;STAT1,3:-1.14293349812;TEF:-1.169988987;NKX2-2,8:-1.17983052358;CRX:-1.20311175381;PAX4:-1.20983080526;TAL1_TCF{3,4,12}:-1.21726600927;IKZF1:-1.25982500477;ZIC1..3:-1.27885415852;NFATC1..3:-1.32241917907;TBX4,5:-1.32720723731;NKX3-1:-1.42923594321;EP300:-1.46487171141;IRF1,2:-1.49286256578;SMAD1..7,9:-1.50514348328;ARID5B:-1.53011471897;NKX6-1,2:-1.55029315705;HIF1A:-1.56765889592;SPZ1:-1.5696463925;HMGA1,2:-1.62047761757;ZNF238:-1.62507066206;RXR{A,B,G}:-1.62625427009;ZNF423:-1.67937913013;PAX5:-1.69525333322;HMX1:-1.8456493618;NFE2L1:-2.05987636199 | |top_motifs=HNF4A_NR2F1,2:3.02107122772;LEF1_TCF7_TCF7L1,2:2.83966977704;HNF1A:2.61068626893;FOXA2:2.56196584453;FOX{F1,F2,J1}:2.36378658859;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.12098186747;bHLH_family:1.94280388571;SOX{8,9,10}:1.63588078037;POU6F1:1.52674388803;NFY{A,B,C}:1.52456764333;ONECUT1,2:1.51598541077;SNAI1..3:1.51440104956;TFDP1:1.29529672604;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.22397867388;GFI1:1.16355898817;GATA6:1.15765198934;HOX{A6,A7,B6,B7}:1.13880578858;PBX1:1.12782039612;E2F1..5:1.08083334157;ZEB1:1.06296536477;RBPJ:1.04937515738;DBP:1.00666122716;SOX17:0.999082014346;T:0.986608911661;PDX1:0.980044745148;FOX{D1,D2}:0.975172051829;CDC5L:0.955998411031;MYOD1:0.934556065755;STAT5{A,B}:0.928193124987;TBP:0.924999429816;VSX1,2:0.891477534347;PPARG:0.846574681019;NR5A1,2:0.819473000319;POU3F1..4:0.809058380874;POU2F1..3:0.678330847875;FOXP1:0.672621664978;MYB:0.661412354131;ZBTB16:0.658935370661;PITX1..3:0.646835695974;MTF1:0.639146507793;ZFP161:0.635231883248;NKX2-1,4:0.605290299059;TOPORS:0.593873176671;SOX2:0.585479905773;MED-1{core}:0.560168042624;FOXM1:0.555151646293;HOXA9_MEIS1:0.508862337586;NR3C1:0.487371653499;OCT4_SOX2{dimer}:0.457804371711;ZNF143:0.453713044638;RORA:0.450457819876;FOX{I1,J2}:0.437987380431;CUX2:0.431121519894;TFAP2{A,C}:0.426641279293;TFAP2B:0.405704420831;NRF1:0.404503331821;PAX2:0.387354541779;BREu{core}:0.387224184278;TEAD1:0.371968278635;SP1:0.370090540938;PATZ1:0.330563953599;IKZF2:0.323537618333;ATF4:0.317731346707;MTE{core}:0.275125067208;FOXD3:0.242711063887;ATF6:0.220738860033;FOXO1,3,4:0.212108899175;ELK1,4_GABP{A,B1}:0.200645471266;ADNP_IRX_SIX_ZHX:0.194181753727;SOX5:0.188183352252;SREBF1,2:0.162272990189;FOXN1:0.128317478866;CEBPA,B_DDIT3:0.124984370502;HOX{A5,B5}:0.112613825356;FOXQ1:0.0855074737912;ATF2:0.0654206580643;LMO2:0.0553817857162;MAZ:0.0498291089936;AHR_ARNT_ARNT2:0.0454655920726;NKX2-3_NKX2-5:0.0375513891153;YY1:0.0269493809298;TFAP4:0.0168742707328;GATA4:-0.00750783113043;EBF1:-0.0138961591463;NFE2:-0.0179620823017;PRRX1,2:-0.0248872479332;ATF5_CREB3:-0.0379786579824;BPTF:-0.0593651115729;HLF:-0.0742419240488;LHX3,4:-0.087337601329;FOSL2:-0.110024004177;NFIX:-0.110500445706;HIC1:-0.117432482461;MEF2{A,B,C,D}:-0.135645423677;EVI1:-0.138997382051;NHLH1,2:-0.153272144485;NR6A1:-0.154831129397;PAX1,9:-0.167595431132;ESRRA:-0.177431517305;NFKB1_REL_RELA:-0.215312596233;AIRE:-0.223075394012;AR:-0.229607159664;POU1F1:-0.248494621756;FOS_FOS{B,L1}_JUN{B,D}:-0.285153423018;NFIL3:-0.301838997067;RFX1:-0.304116407903;XCPE1{core}:-0.314216556223;REST:-0.322484999876;GTF2I:-0.332823855062;NFE2L2:-0.346607446705;TFCP2:-0.346945540151;EGR1..3:-0.361240097503;NANOG:-0.396296568457;MAFB:-0.40007687573;PAX6:-0.40262566695;HOX{A4,D4}:-0.40353254158;HAND1,2:-0.407273162749;BACH2:-0.41645385902;CREB1:-0.420659166884;ESR1:-0.422672407866;MYFfamily:-0.433443529994;ALX1:-0.447718617167;DMAP1_NCOR{1,2}_SMARC:-0.464883738765;PAX8:-0.466891222244;GFI1B:-0.478121245189;RUNX1..3:-0.483677295841;KLF4:-0.485366233188;NANOG{mouse}:-0.486146298313;XBP1:-0.509812839853;PAX3,7:-0.516840390657;HBP1_HMGB_SSRP1_UBTF:-0.523089955341;HES1:-0.540172246496;STAT2,4,6:-0.542924169302;MZF1:-0.543909054042;POU5F1:-0.552013682148;MYBL2:-0.570376558554;CDX1,2,4:-0.574884600108;SRF:-0.592613633526;GTF2A1,2:-0.600086915098;RFX2..5_RFXANK_RFXAP:-0.626491814068;TLX1..3_NFIC{dimer}:-0.634449146013;EN1,2:-0.647894457888;RXRA_VDR{dimer}:-0.667425164563;RREB1:-0.687071544326;GZF1:-0.723805050243;SPIB:-0.738403908034;JUN:-0.7602958171;SPI1:-0.767350957814;TLX2:-0.773069773364;IRF7:-0.788880514059;TP53:-0.791906194606;ZNF384:-0.808307034357;PRDM1:-0.842938243988;FOXL1:-0.848571463883;NR1H4:-0.876176497824;ZNF148:-0.921108992033;UFEwm:-0.924600347331;ETS1,2:-0.934655203357;NKX3-2:-0.965162917596;GCM1,2:-0.969788188773;ALX4:-0.981473857822;HSF1,2:-1.01246172848;FOXP3:-1.0402341818;TGIF1:-1.06464778692;ZBTB6:-1.10156958674;GLI1..3:-1.11681542314;ELF1,2,4:-1.13679698831;STAT1,3:-1.14293349812;TEF:-1.169988987;NKX2-2,8:-1.17983052358;CRX:-1.20311175381;PAX4:-1.20983080526;TAL1_TCF{3,4,12}:-1.21726600927;IKZF1:-1.25982500477;ZIC1..3:-1.27885415852;NFATC1..3:-1.32241917907;TBX4,5:-1.32720723731;NKX3-1:-1.42923594321;EP300:-1.46487171141;IRF1,2:-1.49286256578;SMAD1..7,9:-1.50514348328;ARID5B:-1.53011471897;NKX6-1,2:-1.55029315705;HIF1A:-1.56765889592;SPZ1:-1.5696463925;HMGA1,2:-1.62047761757;ZNF238:-1.62507066206;RXR{A,B,G}:-1.62625427009;ZNF423:-1.67937913013;PAX5:-1.69525333322;HMX1:-1.8456493618;NFE2L1:-2.05987636199 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10633-108I3;search_select_hide=table117:FF:10633-108I3 | |||
}} | }} | ||
Latest revision as of 14:31, 3 June 2020
| Name: | hepatoblastoma cell line:HuH-6 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11742 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11742
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11742
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.86 |
| 10 | 10 | 0.00628 |
| 100 | 100 | 0.993 |
| 101 | 101 | 0.889 |
| 102 | 102 | 0.902 |
| 103 | 103 | 0.343 |
| 104 | 104 | 0.875 |
| 105 | 105 | 0.908 |
| 106 | 106 | 0.0012 |
| 107 | 107 | 0.142 |
| 108 | 108 | 0.713 |
| 109 | 109 | 0.12 |
| 11 | 11 | 0.266 |
| 110 | 110 | 0.288 |
| 111 | 111 | 0.108 |
| 112 | 112 | 0.0809 |
| 113 | 113 | 0.21 |
| 114 | 114 | 0.0991 |
| 115 | 115 | 0.0162 |
| 116 | 116 | 0.211 |
| 117 | 117 | 0.195 |
| 118 | 118 | 0.7 |
| 119 | 119 | 0.164 |
| 12 | 12 | 0.394 |
| 120 | 120 | 0.453 |
| 121 | 121 | 0.187 |
| 122 | 122 | 0.283 |
| 123 | 123 | 0.412 |
| 124 | 124 | 0.602 |
| 125 | 125 | 0.154 |
| 126 | 126 | 0.308 |
| 127 | 127 | 0.425 |
| 128 | 128 | 0.0782 |
| 129 | 129 | 0.408 |
| 13 | 13 | 0.148 |
| 130 | 130 | 0.665 |
| 131 | 131 | 0.163 |
| 132 | 132 | 0.345 |
| 133 | 133 | 0.148 |
| 134 | 134 | 0.0637 |
| 135 | 135 | 0.0471 |
| 136 | 136 | 0.379 |
| 137 | 137 | 0.0524 |
| 138 | 138 | 0.156 |
| 139 | 139 | 0.286 |
| 14 | 14 | 0.697 |
| 140 | 140 | 0.353 |
| 141 | 141 | 0.0206 |
| 142 | 142 | 0.847 |
| 143 | 143 | 0.0132 |
| 144 | 144 | 0.495 |
| 145 | 145 | 0.262 |
| 146 | 146 | 0.671 |
| 147 | 147 | 0.423 |
| 148 | 148 | 0.0455 |
| 149 | 149 | 0.368 |
| 15 | 15 | 0.651 |
| 150 | 150 | 0.411 |
| 151 | 151 | 0.657 |
| 152 | 152 | 0.0819 |
| 153 | 153 | 0.149 |
| 154 | 154 | 0.24 |
| 155 | 155 | 0.301 |
| 156 | 156 | 0.708 |
| 157 | 157 | 0.681 |
| 158 | 158 | 0.549 |
| 159 | 159 | 0.649 |
| 16 | 16 | 0.294 |
| 160 | 160 | 0.883 |
| 161 | 161 | 0.71 |
| 162 | 162 | 0.402 |
| 163 | 163 | 0.966 |
| 164 | 164 | 0.0487 |
| 165 | 165 | 0.627 |
| 166 | 166 | 0.341 |
| 167 | 167 | 0.746 |
| 168 | 168 | 0.757 |
| 169 | 169 | 0.428 |
| 17 | 17 | 0.429 |
| 18 | 18 | 0.0912 |
| 19 | 19 | 0.348 |
| 2 | 2 | 0.166 |
| 20 | 20 | 0.973 |
| 21 | 21 | 0.288 |
| 22 | 22 | 0.807 |
| 23 | 23 | 0.0869 |
| 24 | 24 | 0.529 |
| 25 | 25 | 0.591 |
| 26 | 26 | 0.508 |
| 27 | 27 | 0.209 |
| 28 | 28 | 0.465 |
| 29 | 29 | 0.87 |
| 3 | 3 | 0.0807 |
| 30 | 30 | 0.981 |
| 31 | 31 | 0.779 |
| 32 | 32 | 0.00149 |
| 33 | 33 | 0.276 |
| 34 | 34 | 0.746 |
| 35 | 35 | 0.718 |
| 36 | 36 | 0.177 |
| 37 | 37 | 0.0176 |
| 38 | 38 | 0.807 |
| 39 | 39 | 0.357 |
| 4 | 4 | 0.345 |
| 40 | 40 | 0.697 |
| 41 | 41 | 0.293 |
| 42 | 42 | 0.704 |
| 43 | 43 | 0.111 |
| 44 | 44 | 0.559 |
| 45 | 45 | 0.518 |
| 46 | 46 | 0.59 |
| 47 | 47 | 0.871 |
| 48 | 48 | 0.613 |
| 49 | 49 | 0.707 |
| 5 | 5 | 0.804 |
| 50 | 50 | 0.696 |
| 51 | 51 | 0.715 |
| 52 | 52 | 0.692 |
| 53 | 53 | 0.627 |
| 54 | 54 | 0.756 |
| 55 | 55 | 0.387 |
| 56 | 56 | 0.675 |
| 57 | 57 | 0.774 |
| 58 | 58 | 0.862 |
| 59 | 59 | 0.0287 |
| 6 | 6 | 0.88 |
| 60 | 60 | 0.526 |
| 61 | 61 | 0.252 |
| 62 | 62 | 0.342 |
| 63 | 63 | 0.423 |
| 64 | 64 | 0.517 |
| 65 | 65 | 0.133 |
| 66 | 66 | 0.0101 |
| 67 | 67 | 0.818 |
| 68 | 68 | 0.00407 |
| 69 | 69 | 0.0993 |
| 7 | 7 | 0.163 |
| 70 | 70 | 5.14154e-4 |
| 71 | 71 | 0.00349 |
| 72 | 72 | 0.0749 |
| 73 | 73 | 0.116 |
| 74 | 74 | 0.674 |
| 75 | 75 | 0.632 |
| 76 | 76 | 0.262 |
| 77 | 77 | 0.125 |
| 78 | 78 | 0.0515 |
| 79 | 79 | 0.00988 |
| 8 | 8 | 0.351 |
| 80 | 80 | 0.381 |
| 81 | 81 | 0.268 |
| 82 | 82 | 0.0212 |
| 83 | 83 | 0.529 |
| 84 | 84 | 0.423 |
| 85 | 85 | 6.92955e-4 |
| 86 | 86 | 0.107 |
| 87 | 87 | 0.658 |
| 88 | 88 | 0.467 |
| 89 | 89 | 0.374 |
| 9 | 9 | 0.0947 |
| 90 | 90 | 0.999 |
| 91 | 91 | 0.351 |
| 92 | 92 | 0.0707 |
| 93 | 93 | 0.428 |
| 94 | 94 | 0.262 |
| 95 | 95 | 0.0297 |
| 96 | 96 | 0.826 |
| 97 | 97 | 0.646 |
| 98 | 98 | 0.849 |
| 99 | 99 | 0.863 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11742
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101670 HuH-6 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0101664 (hepatoblastoma cell line sample)
0101670 (HuH-6 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
