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{{f5samples
{{f5samples
|id=FF:10419-106C5
|DRA_sample_Accession=CAGE@SAMD00005250
|name=breast carcinoma cell line:MDA-MB-453, biol_rep1
|accession_numbers=CAGE;DRX007838;DRR008710;DRZ000135;DRZ001520;DRZ011485;DRZ012870
|sample_id=10419
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0001443,UBERON:0003100,UBERON:0000915,UBERON:0002330
|rna_tube_id=106C5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:5093,DOID:305,DOID:1612
|rna_position=C5
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100816,FF:0104086,FF:0100356,FF:0103568,FF:0101908
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1192
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr6:34524093..34524135,-!p1@SPDEF!2.80!629.19!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!2.63!512.78!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!2.54!348.79!FOXA1;;chr11:34642612..34642646,+!p1@EHF!2.35!225.12!EHF;;chr6:50786591..50786614,+!p1@TFAP2B!2.28!188.56!TFAP2B;;chr6:50786509..50786527,+!p5@TFAP2B!2.15!141.42!TFAP2B;;chr6:50786547..50786564,+!p3@TFAP2B!2.08!119.73!TFAP2B;;chr6:50786571..50786590,+!p2@TFAP2B!2.03!105.39!TFAP2B;;chr13:72441315..72441454,-!p1@DACH1!2.00!191.19!DACH1;;chr6:10415276..10415341,-!p2@TFAP2A!1.97!111.51!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.93!83.79!TFAP2A;;chr8:116681409..116681431,-!p2@TRPS1!1.83!175.88!TRPS1;;chr10:8095593..8095625,+!p3@GATA3!1.81!74.43!GATA3;;chr11:34645791..34645836,+!p3@EHF!1.81!64.20!EHF;;chrX:66763856..66763896,+!p1@AR!1.80!87.90!AR;;chr6:10412600..10412637,-!p1@TFAP2A!1.76!92.18!TFAP2A;;chr2:45236540..45236577,-!p1@SIX2!1.74!53.53!SIX2;;chr1:153940716..153940739,+!p4@CREB3L4!1.72!51.78!CREB3L4;;chr6:10419768..10419819,-!p6@TFAP2A!1.72!50.99!TFAP2A;;chr11:120107344..120107351,+!p1@POU2F3!1.69!57.02!POU2F3;;chr8:102504651..102504683,+!p1@GRHL2!1.69!47.67!GRHL2;;chr6:50786479..50786490,+!p6@TFAP2B!1.67!46.09!TFAP2B;;chr6:50786414..50786426,+!p7@TFAP2B!1.64!42.42!TFAP2B;;chr10:8096772..8096787,+!p2@GATA3!1.62!47.67!GATA3;;chr6:10419884..10419898,-!p11@TFAP2A!1.60!39.27!TFAP2A;;chr1:61547894..61547968,+!p2@NFIA!1.59!107.49!NFIA;;chr1:201979743..201979762,+!p1@ELF3!1.59!37.52!ELF3;;chr12:54378923..54378966,+!p1@HOXC10!1.57!36.56!HOXC10;;chr14:38064590..38064606,-!p2@FOXA1!1.57!36.47!FOXA1;;chr6:50789717..50789729,+!p4@TFAP2B!1.57!36.21!TFAP2B;;chr17:17726907..17726958,-!p2@SREBF1!1.54!198.01!SREBF1;;chr18:45663490..45663528,-!p2@ZBTB7C!1.54!33.32!ZBTB7C;;chr1:164528687..164528711,+!p6@PBX1!1.53!38.13!PBX1;;chr6:34524049..34524089,-!p2@SPDEF!1.53!32.71!SPDEF;;chrX:66763914..66763933,+!p3@AR!1.53!32.54!AR;;chr1:209979467..209979494,-!p1@IRF6!1.52!36.30!IRF6;;chr6:135502501..135502546,+!p1@MYB!1.48!34.90!MYB;;chr17:53342311..53342400,+!p1@HLF!1.47!32.45!HLF;;chr5:92918919..92918942,+!p1@NR2F1!1.46!121.22!NR2F1;;chr1:164528410..164528428,+!p1@PBX1!1.45!198.53!PBX1;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!39.88!ZNF385A;;chr14:37131058..37131139,+!p1@PAX9!1.44!26.24!PAX9;;chr22:29196433..29196445,-!p4@XBP1!1.43!28.51!XBP1;;chr22:29196547..29196563,-!p2@XBP1!1.42!885.88!XBP1;;chr20:39317868..39317884,-!p1@MAFB!1.42!288.88!MAFB;;chr6:50786529..50786540,+!p8@TFAP2B!1.40!24.23!TFAP2B;;chr7:42276787..42276815,-!p1@GLI3!1.38!60.26!GLI3;;chr16:54320101..54320125,-!p4@IRX3!1.38!32.36!IRX3;;chr12:54379029..54379057,+!p2@HOXC10!1.35!21.25!HOXC10;;chr12:54366975..54367001,+!p1@HOXC11!1.34!20.82!HOXC11;;chr20:55204351..55204377,+!p1@TFAP2C!1.33!25.80!TFAP2C;;chr5:92918768..92918783,+!p8@NR2F1!1.30!18.80!NR2F1;;chr16:54964740..54964789,+!p1@IRX5!1.29!26.33!IRX5;;chr12:54384370..54384382,+!p5@HOXC6!1.29!18.28!HOXC6;;chr12:54785054..54785072,-!p4@ZNF385A!1.28!20.64!ZNF385A;;chr11:34642656..34642667,+!p2@EHF!1.27!17.49!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.25!25.98!XBP1;;chr8:116681123..116681143,-!p4@TRPS1!1.24!31.57!TRPS1;;chr5:92918860..92918871,+!p10@NR2F1!1.24!18.28!NR2F1;;chr6:10419824..10419840,-!p9@TFAP2A!1.24!16.44!TFAP2A;;chr1:24645921..24645973,+!p2@GRHL3!1.24!16.27!GRHL3;;chr14:38064495..38064506,-!p4@FOXA1!1.23!15.83!FOXA1;;chr1:24646002..24646013,+!p3@GRHL3!1.22!15.57!GRHL3;;chr19:45579725..45579743,-!p1@ZNF296!1.21!67.34!ZNF296;;chr2:10091815..10091864,+!p1@GRHL1!1.21!20.12!GRHL1;;chr17:45928521..45928539,-!p1@SP6!1.21!15.13!SP6;;chr7:156803329..156803362,-!p1@MNX1!1.20!14.78!MNX1;;chr1:61548225..61548299,+!p1@NFIA!1.19!187.69!NFIA;;chr1:204042233..204042249,+!p1@SOX13!1.18!87.90!SOX13;;chr7:149470641..149470694,-!p1@ZNF467!1.18!62.88!ZNF467;;chr5:92918894..92918912,+!p2@NR2F1!1.18!46.09!NR2F1;;chr8:116681221..116681236,-!p3@TRPS1!1.18!41.46!TRPS1;;chr19:49864746..49864780,-!p2@TEAD2!1.18!19.50!TEAD2;;chr1:44513995..44514031,+!p1@KLF17!1.18!14.26!KLF17;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.86!SIX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.22!TFAP2A;;chr19:33793430..33793447,-!p1@CEBPA!1.15!54.75!CEBPA;;chr1:164559556..164559568,+!p21@PBX1!1.15!13.12!PBX1;;chr17:80797886..80797906,-!p1@ZNF750!1.15!13.03!ZNF750;;chr14:105267423..105267443,+!p2@ZBTB42!1.14!12.86!ZBTB42;;chr11:120110863..120110908,+!p2@POU2F3!1.14!12.77!POU2F3;;chr1:164528384..164528409,+!p3@PBX1!1.13!39.18!PBX1;;chr1:164528445..164528459,+!p2@PBX1!1.13!39.01!PBX1;;chrX:66763970..66763981,+!p7@AR!1.13!12.51!AR;;chr1:61547811..61547837,+!p7@NFIA!1.12!17.93!NFIA;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.89!IRX2;;chr1:153940741..153940751,+!p7@CREB3L4!1.10!11.63!CREB3L4;;chr19:45908292..45908374,-!p1@PPP1R13L!1.09!99.62!PPP1R13L;;chr7:42276822..42276895,-!p2@GLI3!1.09!33.58!GLI3;;chr15:96869511..96869525,+!p16@NR2F2!1.09!12.51!NR2F2;;chr6:50789737..50789746,+!p10@TFAP2B!1.09!11.28!TFAP2B;;chr3:71632840..71632857,-!p10@FOXP1!1.08!22.13!FOXP1;;chr14:37132241..37132304,+!p3@PAX9!1.08!11.11!PAX9;;chr12:115121962..115121987,-!p1@TBX3!1.07!89.91!TBX3;;chr8:102504979..102505010,+!p2@GRHL2!1.07!10.85!GRHL2;;chr22:42229210..42229229,+!p3@SREBF2!1.06!25.01!SREBF2;;chr8:116681108..116681120,-!p9@TRPS1!1.06!13.21!TRPS1;;chr22:31739291..31739311,-!p2@PATZ1!1.06!10.41!PATZ1;;chr12:54366949..54366973,+!p3@HOXC11!1.06!10.41!HOXC11;;chr8:116681194..116681214,-!p1@TRPS1!1.05!96.21!TRPS1;;chr1:935398..935465,-!p2@HES4!1.05!21.17!HES4;;chrX:107019163..107019179,-!p7@TSC22D3!1.04!11.63!TSC22D3;;chr17:48045917..48045977,+!p1@DLX4!1.04!9.88!DLX4;;chr17:48072574..48072597,-!p1@DLX3!1.04!9.88!DLX3;;chr1:204042275..204042286,+!p4@SOX13!1.03!15.57!SOX13;;chr5:174151612..174151633,+!p2@MSX2!1.03!9.80!MSX2;;chr12:80084737..80084763,-!p3@PAWR!1.02!35.86!PAWR;;chr10:8100691..8100732,+!p5@GATA3!1.02!9.53!GATA3;;chr12:54380036..54380091,+!p4@HOXC10!1.02!9.53!HOXC10;;chr1:10856639..10856662,-!p2@CASZ1!1.02!9.53!CASZ1;;chr22:31739411..31739446,-!p5@PATZ1!1.02!9.45!PATZ1;;chr18:55102598..55102623,+!p1@ONECUT2!1.02!9.36!ONECUT2;;chr6:10412576..10412599,-!p5@TFAP2A!1.02!9.36!TFAP2A;;chr22:42229246..42229270,+!p2@SREBF2!1.01!117.90!SREBF2;;chr6:10413188..10413249,-!p7@TFAP2A!1.01!9.27!TFAP2A;;chr11:120110844..120110861,+!p3@POU2F3!1.01!9.27!POU2F3;;chr9:14314566..14314618,-!p1@NFIB!1.00!110.90!NFIB;;chr3:71632864..71632885,-!p4@FOXP1!1.00!31.57!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!1.00!15.22!MSX2;;chr16:54320617..54320643,-!p3@IRX3!1.00!11.54!IRX3;;chr2:45236579..45236596,-!p2@SIX2!1.00!9.10!SIX2;;chr11:65554528..65554546,+!p1@OVOL1!1.00!9.10!OVOL1;;chr16:30102849..30102865,-!p2@TBX6!1.00!9.01!TBX6;;chr5:137801160..137801176,+!p1@EGR1!0.99!897.43!EGR1;;chr1:61548069..61548102,+!p3@NFIA!0.99!21.52!NFIA;;chrX:66763815..66763854,+!p2@AR!0.99!11.72!AR;;chr12:52445218..52445237,+!p1@NR4A1!0.98!109.59!NR4A1;;chr3:24536253..24536328,-!p1@THRB!0.98!16.62!THRB;;chr14:38064572..38064584,-!p5@FOXA1!0.98!8.57!FOXA1;;chr12:54332687..54332701,+!p3@HOXC13!0.98!8.48!HOXC13;;chr14:38064536..38064550,-!p7@FOXA1!0.98!8.48!FOXA1;;chr8:116680833..116680881,-!p7@TRPS1!0.97!12.77!TRPS1;;chr16:54320158..54320200,-!p5@IRX3!0.97!11.98!IRX3;;chr17:7197911..7197964,-!p1@YBX2!0.97!8.40!YBX2;;chr11:65554563..65554576,+!p2@OVOL1!0.96!8.22!OVOL1;;chr20:18038521..18038571,-!p1@OVOL2!0.96!8.13!OVOL2;;chr1:201979703..201979721,+!p2@ELF3!0.96!8.05!ELF3;;chr14:75745523..75745537,+!p1@FOS!0.95!983.23!FOS;;chr12:54332652..54332671,+!p2@HOXC13!0.95!7.96!HOXC13;;chrX:66764343..66764362,+!p4@AR!0.95!7.87!AR;;chr2:239148671..239148686,-!p1@HES6!0.94!29.04!HES6;;chr1:8763440..8763460,-!p2@RERE!0.93!39.62!RERE;;chr17:46622440..46622477,-!p5@HOXB2!0.93!8.40!HOXB2;;chr8:102504690..102504704,+!p3@GRHL2!0.93!7.61!GRHL2;;chr10:8097321..8097348,+!p4@GATA3!0.93!7.52!GATA3;;chr13:72441074..72441172,-!p2@DACH1!0.93!7.43!DACH1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.92!817.05!ZFP36L2;;chr1:41827095..41827155,+!p1@FOXO6!0.92!10.15!FOXO6;;chr13:72441506..72441562,-!p3@DACH1!0.92!7.26!DACH1;;chrX:84498989..84499003,+!p1@ZNF711!0.91!9.97!ZNF711;;chr12:54332608..54332636,+!p1@HOXC13!0.91!7.17!HOXC13;;chr1:164528340..164528379,+!p4@PBX1!0.90!17.75!PBX1;;chr6:50786057..50786069,+!p9@TFAP2B!0.90!6.91!TFAP2B;;chrX:107018969..107019024,-!p6@TSC22D3!0.89!9.53!TSC22D3;;chr1:10856665..10856683,-!p4@CASZ1!0.89!6.73!CASZ1;;chr3:128206762..128206781,-!p2@GATA2!0.88!43.29!GATA2;;chr10:8097295..8097320,+!p6@GATA3!0.88!6.65!GATA3;;chr6:10415263..10415274,-!p8@TFAP2A!0.88!6.56!TFAP2A;;chr6:135502472..135502489,+!p3@MYB!0.88!6.56!MYB;;chr16:29819446..29819471,+!p9@MAZ!0.87!19.85!MAZ;;chr12:54378984..54378996,+!p7@HOXC10!0.87!6.38!HOXC10;;chr8:116681150..116681164,-!p5@TRPS1!0.86!12.51!TRPS1;;chr8:116681247..116681261,-!p8@TRPS1!0.86!8.13!TRPS1;;chr12:54367122..54367144,+!p4@HOXC11!0.86!6.30!HOXC11;;chr16:54319010..54319041,-!p8@IRX3!0.86!6.21!IRX3;;chr17:61920023..61920110,-!p1@SMARCD2!0.85!90.17!SMARCD2;;chr7:149470540..149470596,-!p2@ZNF467!0.85!8.22!ZNF467;;chr6:34524025..34524045,-!p3@SPDEF!0.85!6.03!SPDEF;;chr19:49140609..49140643,-!p1@DBP!0.84!35.33!DBP;;chr16:30102828..30102840,-!p5@TBX6!0.84!5.86!TBX6;;chrX:131623044..131623089,-!p1@MBNL3!0.83!25.54!MBNL3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.83!5.68!ZBED1;;chr8:116673894..116673913,-!p12@TRPS1!0.83!5.68!TRPS1;;chr12:54367012..54367025,+!p5@HOXC11!0.83!5.68!HOXC11;;chr1:10754477..10754517,-!p1@CASZ1!0.82!9.80!CASZ1;;chr10:22292591..22292606,-!p2@DNAJC1!0.82!9.53!DNAJC1;;chr14:38064307..38064323,-!p3@FOXA1!0.82!5.60!FOXA1;;chr22:29196511..29196541,-!p1@XBP1!0.81!655.51!XBP1;;chr1:204042723..204042784,+!p3@SOX13!0.81!9.53!SOX13;;chr12:48298765..48298783,-!p2@VDR!0.80!11.81!VDR;;chr15:56535922..56535936,-!p5@RFX7!0.80!7.35!RFX7;;chr22:31741725..31741744,-!p6@PATZ1!0.80!5.34!PATZ1;;chr12:54378864..54378884,+!p6@HOXC10!0.80!5.34!HOXC10;;chr1:227751231..227751273,+!p1@ZNF678!0.79!35.42!ZNF678;;chr19:19976683..19976709,+!p1@ZNF253!0.79!24.49!ZNF253;;chr6:50786631..50786635,+!p11@TFAP2B!0.79!5.16!TFAP2B;;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|sample_dev_stage=
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0008425,UBERON:0010316
|sample_tissue=breast
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=unknown
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=1.83000
|rna_od260/280=2.09000
|sample_cell_type=unclassifiable
|sample_cell_line=MDA-MB-453
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=breast carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=56.42525
|rna_concentration=2.25701
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10736,LSID691,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000076,UBERON:0000119,UBERON:0000310,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001048,UBERON:0001062,UBERON:0001443,UBERON:0001911,UBERON:0002050,UBERON:0002330,UBERON:0002365,UBERON:0002530,UBERON:0002532,UBERON:0003100,UBERON:0004121,UBERON:0005085,UBERON:0005153,UBERON:0005291,UBERON:0005311,UBERON:0005333,UBERON:0005423,UBERON:0005482,UBERON:0008425
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:1612,DOID:162,DOID:305,DOID:4,DOID:5093,DOID:7
|sample_description=
 
|fonse_cell_line=FF:0100816,FF:0101120
|fonse_cell_line=FF:0100816,FF:0101120
|fonse_cell_line_closure=FF:0100816,FF:0101120
|fonse_cell_line_closure=FF:0100816,FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.ctss.bed.gz
|id=FF:10419-106C5
|is_a=EFO:0002091;;FF:0000210;;FF:0101908
|is_obsolete=
|library_id=CNhs10736
|library_id_phase_based=2:CNhs10736
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10419
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10419
|name=breast carcinoma cell line:MDA-MB-453
|namespace=FANTOM5
|part_of=
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|profile_rnaseq=
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|rna_box=106
|rna_catalog_number=
|rna_concentration=2.25701
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.83
|rna_od260/280=2.09
|rna_position=C5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=106C5
|rna_weight_ug=56.42525
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=RCB1192
|sample_cell_line=MDA-MB-453
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=breast carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89429399503575e-265!GO:0043231;intracellular membrane-bound organelle;1.57989590267974e-234!GO:0043227;membrane-bound organelle;2.99518990289821e-234!GO:0043226;organelle;6.90328823462652e-225!GO:0043229;intracellular organelle;2.00260010424672e-224!GO:0005737;cytoplasm;6.48472259112131e-156!GO:0044422;organelle part;3.18845150691676e-151!GO:0044446;intracellular organelle part;7.05030413620271e-150!GO:0044444;cytoplasmic part;1.08130527125086e-116!GO:0005634;nucleus;1.12443076792296e-113!GO:0044237;cellular metabolic process;2.84794631137234e-100!GO:0044238;primary metabolic process;9.39662811882795e-99!GO:0043170;macromolecule metabolic process;1.23522802891586e-93!GO:0032991;macromolecular complex;1.82567398895841e-90!GO:0044428;nuclear part;1.09361200384652e-82!GO:0043233;organelle lumen;1.50769616540766e-78!GO:0031974;membrane-enclosed lumen;1.50769616540766e-78!GO:0030529;ribonucleoprotein complex;1.28101101491814e-75!GO:0003723;RNA binding;8.48025793983291e-71!GO:0043283;biopolymer metabolic process;4.31485364252619e-69!GO:0005739;mitochondrion;2.16602974042034e-66!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.54103320607961e-64!GO:0005515;protein binding;1.35595928891098e-60!GO:0010467;gene expression;1.76893570035178e-60!GO:0031090;organelle membrane;2.11184320498778e-54!GO:0006396;RNA processing;3.84911512666145e-52!GO:0031981;nuclear lumen;1.62479694584704e-51!GO:0015031;protein transport;2.87077490295081e-51!GO:0033036;macromolecule localization;5.76352069717989e-49!GO:0044429;mitochondrial part;6.32109303145824e-47!GO:0043234;protein complex;9.04151741885288e-46!GO:0045184;establishment of protein localization;2.06247794237366e-45!GO:0016043;cellular component organization and biogenesis;2.36181754553388e-45!GO:0008104;protein localization;2.77414207989205e-45!GO:0016071;mRNA metabolic process;3.77243036724408e-43!GO:0003676;nucleic acid binding;1.70466360000898e-42!GO:0031967;organelle envelope;4.88814412108815e-42!GO:0031975;envelope;8.39341628115332e-42!GO:0005840;ribosome;1.54307764931628e-41!GO:0006259;DNA metabolic process;1.56941628785292e-40!GO:0006412;translation;1.06606791301561e-39!GO:0008380;RNA splicing;5.58034536040726e-39!GO:0006397;mRNA processing;4.6164378846231e-37!GO:0046907;intracellular transport;1.54896225165316e-36!GO:0019538;protein metabolic process;1.29212663003368e-35!GO:0016070;RNA metabolic process;1.56273101045898e-35!GO:0003735;structural constituent of ribosome;2.18317966156401e-34!GO:0005654;nucleoplasm;6.02794781830642e-34!GO:0006996;organelle organization and biogenesis;9.63887120716803e-33!GO:0006886;intracellular protein transport;1.22336064037929e-32!GO:0065003;macromolecular complex assembly;3.1986275132459e-32!GO:0044267;cellular protein metabolic process;1.17563239937958e-31!GO:0009058;biosynthetic process;3.21083447542246e-31!GO:0005829;cytosol;3.9556244456262e-31!GO:0044260;cellular macromolecule metabolic process;5.07610804347974e-31!GO:0044249;cellular biosynthetic process;1.27540891742539e-30!GO:0005740;mitochondrial envelope;1.8990947119242e-30!GO:0033279;ribosomal subunit;1.49334269724021e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.89323221592884e-29!GO:0019866;organelle inner membrane;4.89323221592884e-29!GO:0031966;mitochondrial membrane;1.14509358059408e-28!GO:0022607;cellular component assembly;1.64464820082053e-28!GO:0043228;non-membrane-bound organelle;2.80978355943028e-28!GO:0043232;intracellular non-membrane-bound organelle;2.80978355943028e-28!GO:0009059;macromolecule biosynthetic process;3.22976367950825e-28!GO:0044451;nucleoplasm part;4.89584404961716e-28!GO:0005681;spliceosome;7.65438139615196e-28!GO:0005743;mitochondrial inner membrane;5.04206339027303e-27!GO:0000166;nucleotide binding;6.52225345269013e-27!GO:0051649;establishment of cellular localization;4.85909841697984e-25!GO:0051641;cellular localization;1.08379329775956e-24!GO:0007049;cell cycle;6.42496691193778e-24!GO:0012505;endomembrane system;3.63310847843241e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.16650682155483e-21!GO:0016874;ligase activity;8.75434363038463e-21!GO:0006974;response to DNA damage stimulus;9.78092142782568e-21!GO:0051276;chromosome organization and biogenesis;1.34133252922448e-20!GO:0006512;ubiquitin cycle;1.43515106049006e-20!GO:0006119;oxidative phosphorylation;1.85674292452519e-20!GO:0031980;mitochondrial lumen;1.39659608146766e-19!GO:0005759;mitochondrial matrix;1.39659608146766e-19!GO:0044455;mitochondrial membrane part;1.82094886280667e-19!GO:0044445;cytosolic part;2.58383415762781e-19!GO:0008134;transcription factor binding;3.77055757323358e-19!GO:0005694;chromosome;4.30729749395518e-19!GO:0032553;ribonucleotide binding;5.63227820628733e-19!GO:0032555;purine ribonucleotide binding;5.63227820628733e-19!GO:0044265;cellular macromolecule catabolic process;7.78142851961205e-19!GO:0022618;protein-RNA complex assembly;1.18422983640388e-18!GO:0016462;pyrophosphatase activity;1.35163005374819e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.37141406041508e-18!GO:0017076;purine nucleotide binding;2.54723543012747e-18!GO:0017111;nucleoside-triphosphatase activity;2.76899782731592e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.81900355547253e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;2.83397587108895e-18!GO:0006457;protein folding;3.05044061762037e-18!GO:0006281;DNA repair;6.21595636103578e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03248007799016e-17!GO:0006323;DNA packaging;1.52954435676549e-17!GO:0019941;modification-dependent protein catabolic process;1.7889260430083e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.7889260430083e-17!GO:0005524;ATP binding;1.86076431150962e-17!GO:0006605;protein targeting;2.2143635824807e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.29795957890733e-17!GO:0044432;endoplasmic reticulum part;2.73677553835021e-17!GO:0044257;cellular protein catabolic process;3.32465612284892e-17!GO:0032559;adenyl ribonucleotide binding;3.44489450669358e-17!GO:0005730;nucleolus;6.20803015143065e-17!GO:0044427;chromosomal part;9.87944076927249e-17!GO:0043285;biopolymer catabolic process;1.37708923633086e-16!GO:0022402;cell cycle process;1.4815200684949e-16!GO:0030554;adenyl nucleotide binding;2.5209007505597e-16!GO:0008135;translation factor activity, nucleic acid binding;3.81347544684746e-16!GO:0005783;endoplasmic reticulum;5.14227343636862e-16!GO:0015935;small ribosomal subunit;7.71395230989838e-16!GO:0044248;cellular catabolic process;2.39813894603879e-15!GO:0009057;macromolecule catabolic process;4.55572115376594e-15!GO:0015934;large ribosomal subunit;1.00483049247905e-14!GO:0048193;Golgi vesicle transport;1.15939751030772e-14!GO:0006260;DNA replication;1.3153772136892e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.39127202496963e-14!GO:0009719;response to endogenous stimulus;2.12767420233245e-14!GO:0005746;mitochondrial respiratory chain;2.12767420233245e-14!GO:0005789;endoplasmic reticulum membrane;2.4704438706847e-14!GO:0043412;biopolymer modification;2.55541036033246e-14!GO:0016887;ATPase activity;2.70390983985801e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.90408318702991e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.558651006149e-14!GO:0000375;RNA splicing, via transesterification reactions;4.558651006149e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.558651006149e-14!GO:0016604;nuclear body;4.7261210111609e-14!GO:0031965;nuclear membrane;5.11059810306782e-14!GO:0016192;vesicle-mediated transport;6.09311357818571e-14!GO:0050136;NADH dehydrogenase (quinone) activity;9.68780178784885e-14!GO:0003954;NADH dehydrogenase activity;9.68780178784885e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.68780178784885e-14!GO:0051082;unfolded protein binding;1.02694281956114e-13!GO:0006366;transcription from RNA polymerase II promoter;1.17621676270917e-13!GO:0051186;cofactor metabolic process;3.02941795692707e-13!GO:0042623;ATPase activity, coupled;3.67412939454399e-13!GO:0005794;Golgi apparatus;4.05171444472166e-13!GO:0048770;pigment granule;4.12650006096584e-13!GO:0042470;melanosome;4.12650006096584e-13!GO:0000278;mitotic cell cycle;4.28278949519671e-13!GO:0005761;mitochondrial ribosome;4.80010298607351e-13!GO:0000313;organellar ribosome;4.80010298607351e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.87616611817104e-13!GO:0016607;nuclear speck;6.04678769677315e-13!GO:0030163;protein catabolic process;6.4185150800417e-13!GO:0006913;nucleocytoplasmic transport;8.74418312431177e-13!GO:0051301;cell division;1.2621450010993e-12!GO:0005635;nuclear envelope;1.28774278637673e-12!GO:0016568;chromatin modification;1.90307489025865e-12!GO:0051169;nuclear transport;2.29809020698501e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.14576302839223e-12!GO:0042773;ATP synthesis coupled electron transport;4.14576302839223e-12!GO:0006464;protein modification process;5.88150689877164e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.18319876645699e-12!GO:0045271;respiratory chain complex I;6.18319876645699e-12!GO:0005747;mitochondrial respiratory chain complex I;6.18319876645699e-12!GO:0003712;transcription cofactor activity;8.2155997481019e-12!GO:0006333;chromatin assembly or disassembly;8.2681577344933e-12!GO:0003743;translation initiation factor activity;1.01115533409473e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.18120041880096e-11!GO:0044453;nuclear membrane part;1.27788227058295e-11!GO:0000785;chromatin;1.68744454292808e-11!GO:0004386;helicase activity;1.68744454292808e-11!GO:0019222;regulation of metabolic process;1.68744454292808e-11!GO:0008565;protein transporter activity;1.74312528130511e-11!GO:0006446;regulation of translational initiation;1.93956836901382e-11!GO:0006413;translational initiation;2.48440438171445e-11!GO:0042254;ribosome biogenesis and assembly;2.7805901383986e-11!GO:0022403;cell cycle phase;2.80670545396254e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.87666948451842e-11!GO:0006732;coenzyme metabolic process;5.09359620475027e-11!GO:0043687;post-translational protein modification;5.88001433776314e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.03836841233573e-10!GO:0050794;regulation of cellular process;1.41936980922898e-10!GO:0006350;transcription;2.07465786143371e-10!GO:0008639;small protein conjugating enzyme activity;2.31194864069611e-10!GO:0065004;protein-DNA complex assembly;3.06408420245604e-10!GO:0006399;tRNA metabolic process;3.09042344440288e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.39162773037451e-10!GO:0008026;ATP-dependent helicase activity;3.88218168942087e-10!GO:0017038;protein import;4.99570552883139e-10!GO:0000087;M phase of mitotic cell cycle;5.04367763571979e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.25766612378459e-10!GO:0019787;small conjugating protein ligase activity;5.96545943576421e-10!GO:0031323;regulation of cellular metabolic process;7.64493034338623e-10!GO:0004842;ubiquitin-protein ligase activity;9.35350410705894e-10!GO:0007067;mitosis;1.0364871753358e-09!GO:0005643;nuclear pore;1.60533172525827e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.72647102397676e-09!GO:0016881;acid-amino acid ligase activity;1.77891844716622e-09!GO:0000279;M phase;2.02798789992934e-09!GO:0051726;regulation of cell cycle;4.77328625322002e-09!GO:0010468;regulation of gene expression;7.77786911278557e-09!GO:0000074;regulation of progression through cell cycle;7.93721819019336e-09!GO:0006163;purine nucleotide metabolic process;1.21280122490978e-08!GO:0005768;endosome;1.2142463184237e-08!GO:0050657;nucleic acid transport;1.34720829168936e-08!GO:0051236;establishment of RNA localization;1.34720829168936e-08!GO:0050658;RNA transport;1.34720829168936e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.39314769055422e-08!GO:0019829;cation-transporting ATPase activity;1.52711085589902e-08!GO:0032446;protein modification by small protein conjugation;1.61731114119813e-08!GO:0005793;ER-Golgi intermediate compartment;1.78235010889796e-08!GO:0006403;RNA localization;2.14961000929357e-08!GO:0009055;electron carrier activity;2.56668702574478e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.67861891452242e-08!GO:0009259;ribonucleotide metabolic process;3.32431211251932e-08!GO:0009056;catabolic process;3.39373381880226e-08!GO:0016567;protein ubiquitination;3.41069184601513e-08!GO:0065002;intracellular protein transport across a membrane;3.88082601534423e-08!GO:0006461;protein complex assembly;3.99623521986577e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.37685788777302e-08!GO:0009060;aerobic respiration;4.55264744115335e-08!GO:0032774;RNA biosynthetic process;5.39774327166511e-08!GO:0006164;purine nucleotide biosynthetic process;5.48898718039725e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.48898718039725e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.48898718039725e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.48898718039725e-08!GO:0009150;purine ribonucleotide metabolic process;6.07109202893014e-08!GO:0006351;transcription, DNA-dependent;6.36608224505963e-08!GO:0006364;rRNA processing;7.62281367820217e-08!GO:0005667;transcription factor complex;8.82239513043411e-08!GO:0015986;ATP synthesis coupled proton transport;9.74472703395689e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.74472703395689e-08!GO:0043038;amino acid activation;9.80130551013076e-08!GO:0006418;tRNA aminoacylation for protein translation;9.80130551013076e-08!GO:0043039;tRNA aminoacylation;9.80130551013076e-08!GO:0016740;transferase activity;1.07766954258412e-07!GO:0016072;rRNA metabolic process;1.3332266627887e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.38988548677205e-07!GO:0015630;microtubule cytoskeleton;1.4263205011342e-07!GO:0046930;pore complex;1.42930464699523e-07!GO:0048475;coated membrane;1.47859747507134e-07!GO:0030117;membrane coat;1.47859747507134e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.65771689218585e-07!GO:0009141;nucleoside triphosphate metabolic process;1.66073391791832e-07!GO:0051188;cofactor biosynthetic process;1.8015092400353e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.04459287512638e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.04459287512638e-07!GO:0009260;ribonucleotide biosynthetic process;2.08326443107458e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.45565189292714e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.45565189292714e-07!GO:0044431;Golgi apparatus part;2.49054033383203e-07!GO:0006334;nucleosome assembly;2.58623631782542e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.7382096631247e-07!GO:0012501;programmed cell death;2.74952985369158e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.32207030334893e-07!GO:0000245;spliceosome assembly;3.32207030334893e-07!GO:0007005;mitochondrion organization and biogenesis;3.35676615213184e-07!GO:0045449;regulation of transcription;3.53579320990425e-07!GO:0006915;apoptosis;3.56989914533736e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.62936871703783e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.62936871703783e-07!GO:0000151;ubiquitin ligase complex;3.91881620758039e-07!GO:0031497;chromatin assembly;4.1469593605114e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.25878371519394e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.65054826112487e-07!GO:0016564;transcription repressor activity;4.67818665726674e-07!GO:0051170;nuclear import;5.23913800812077e-07!GO:0005813;centrosome;5.3850098987204e-07!GO:0016563;transcription activator activity;5.73242652531905e-07!GO:0043623;cellular protein complex assembly;5.73877862857592e-07!GO:0045333;cellular respiration;6.14330918712773e-07!GO:0046034;ATP metabolic process;6.22610323456734e-07!GO:0051028;mRNA transport;6.33801175878917e-07!GO:0006606;protein import into nucleus;7.75633982530617e-07!GO:0006754;ATP biosynthetic process;8.62600831176587e-07!GO:0006753;nucleoside phosphate metabolic process;8.62600831176587e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.06195041973972e-07!GO:0043566;structure-specific DNA binding;9.19839804049622e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.00563688672998e-06!GO:0030120;vesicle coat;1.14383818639715e-06!GO:0030662;coated vesicle membrane;1.14383818639715e-06!GO:0006099;tricarboxylic acid cycle;1.15845645437198e-06!GO:0046356;acetyl-CoA catabolic process;1.15845645437198e-06!GO:0003713;transcription coactivator activity;1.2668158088425e-06!GO:0016779;nucleotidyltransferase activity;1.58783833960288e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.93113710530418e-06!GO:0005815;microtubule organizing center;1.9627005714354e-06!GO:0006613;cotranslational protein targeting to membrane;2.02433937734741e-06!GO:0051427;hormone receptor binding;2.045593727492e-06!GO:0006793;phosphorus metabolic process;2.13940601858919e-06!GO:0006796;phosphate metabolic process;2.13940601858919e-06!GO:0003677;DNA binding;2.40673466331495e-06!GO:0050789;regulation of biological process;2.44216865207294e-06!GO:0008219;cell death;2.47442882481779e-06!GO:0016265;death;2.47442882481779e-06!GO:0006084;acetyl-CoA metabolic process;2.8588596962409e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.92055571500864e-06!GO:0006261;DNA-dependent DNA replication;2.99583543842504e-06!GO:0009108;coenzyme biosynthetic process;3.34652348811236e-06!GO:0003697;single-stranded DNA binding;4.33460745004386e-06!GO:0035257;nuclear hormone receptor binding;5.00568237522646e-06!GO:0045259;proton-transporting ATP synthase complex;5.01486097393099e-06!GO:0006355;regulation of transcription, DNA-dependent;5.19358742213165e-06!GO:0031324;negative regulation of cellular metabolic process;5.19358742213165e-06!GO:0003724;RNA helicase activity;8.39565518808505e-06!GO:0000139;Golgi membrane;1.04674563174343e-05!GO:0005798;Golgi-associated vesicle;1.28853401618385e-05!GO:0016310;phosphorylation;1.3388512117025e-05!GO:0009109;coenzyme catabolic process;1.3388512117025e-05!GO:0051168;nuclear export;1.59501114887707e-05!GO:0003714;transcription corepressor activity;1.8826787925501e-05!GO:0006752;group transfer coenzyme metabolic process;2.08730241604159e-05!GO:0005819;spindle;2.24570625532574e-05!GO:0005770;late endosome;2.38212891360842e-05!GO:0003702;RNA polymerase II transcription factor activity;2.49366278787709e-05!GO:0044440;endosomal part;2.58774704625956e-05!GO:0010008;endosome membrane;2.58774704625956e-05!GO:0007264;small GTPase mediated signal transduction;2.68209187498048e-05!GO:0008654;phospholipid biosynthetic process;3.07302872304368e-05!GO:0006402;mRNA catabolic process;3.1146733168197e-05!GO:0016363;nuclear matrix;3.19279099969206e-05!GO:0051187;cofactor catabolic process;3.25132140016377e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.82923138185876e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.89777379913573e-05!GO:0009892;negative regulation of metabolic process;5.82091924104143e-05!GO:0016787;hydrolase activity;6.82948282045798e-05!GO:0000775;chromosome, pericentric region;6.894674316778e-05!GO:0043021;ribonucleoprotein binding;7.78388290183994e-05!GO:0006839;mitochondrial transport;7.96781745049664e-05!GO:0031988;membrane-bound vesicle;8.14329487025153e-05!GO:0016023;cytoplasmic membrane-bound vesicle;8.7353486068557e-05!GO:0045045;secretory pathway;9.46825435423542e-05!GO:0016741;transferase activity, transferring one-carbon groups;0.000104554642144759!GO:0042802;identical protein binding;0.000116089981144429!GO:0005762;mitochondrial large ribosomal subunit;0.000118029633666554!GO:0000315;organellar large ribosomal subunit;0.000118029633666554!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000124548651704232!GO:0003682;chromatin binding;0.000130836762816031!GO:0003690;double-stranded DNA binding;0.000140600929031778!GO:0003729;mRNA binding;0.000145744366640984!GO:0051329;interphase of mitotic cell cycle;0.000157030446521829!GO:0048471;perinuclear region of cytoplasm;0.000159719227685126!GO:0008168;methyltransferase activity;0.000165421529617138!GO:0006612;protein targeting to membrane;0.000165421529617138!GO:0006401;RNA catabolic process;0.000165421529617138!GO:0005839;proteasome core complex (sensu Eukaryota);0.000177125170284497!GO:0031072;heat shock protein binding;0.000177125170284497!GO:0007051;spindle organization and biogenesis;0.000209552745003606!GO:0051789;response to protein stimulus;0.00021450504788014!GO:0006986;response to unfolded protein;0.00021450504788014!GO:0016481;negative regulation of transcription;0.000221224365000293!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000224254952621986!GO:0015399;primary active transmembrane transporter activity;0.000224254952621986!GO:0019899;enzyme binding;0.000240215035562381!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000262084687559226!GO:0006414;translational elongation;0.000271630185930263!GO:0008186;RNA-dependent ATPase activity;0.000274886216667288!GO:0046489;phosphoinositide biosynthetic process;0.000292060386726214!GO:0005769;early endosome;0.000296724747279877!GO:0000786;nucleosome;0.000296877432246384!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000301117415210634!GO:0031968;organelle outer membrane;0.000312109235550755!GO:0051325;interphase;0.000317087265032285!GO:0016126;sterol biosynthetic process;0.000327657769637845!GO:0030384;phosphoinositide metabolic process;0.00032836323282362!GO:0005525;GTP binding;0.000352622575137208!GO:0030176;integral to endoplasmic reticulum membrane;0.000372564684423993!GO:0019867;outer membrane;0.000374393942059663!GO:0030867;rough endoplasmic reticulum membrane;0.000390473001467797!GO:0005657;replication fork;0.000393065574626254!GO:0016853;isomerase activity;0.000412630067883186!GO:0000776;kinetochore;0.000413135253055686!GO:0045786;negative regulation of progression through cell cycle;0.000431242984085684!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000439832492021113!GO:0046474;glycerophospholipid biosynthetic process;0.000477845900483074!GO:0006338;chromatin remodeling;0.000479687437877434!GO:0051252;regulation of RNA metabolic process;0.000481078503440521!GO:0048500;signal recognition particle;0.000493857467071043!GO:0006650;glycerophospholipid metabolic process;0.000494874303287637!GO:0015980;energy derivation by oxidation of organic compounds;0.000497278884561323!GO:0004298;threonine endopeptidase activity;0.000501155739828355!GO:0031252;leading edge;0.000510477937279051!GO:0006383;transcription from RNA polymerase III promoter;0.000515403198275144!GO:0004674;protein serine/threonine kinase activity;0.000517385735861184!GO:0009117;nucleotide metabolic process;0.000520232197932479!GO:0006626;protein targeting to mitochondrion;0.000577819631790815!GO:0033116;ER-Golgi intermediate compartment membrane;0.000587566133876028!GO:0016491;oxidoreductase activity;0.000601710734875288!GO:0005048;signal sequence binding;0.000623885407157068!GO:0003899;DNA-directed RNA polymerase activity;0.000626333172290086!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00066230401639414!GO:0000314;organellar small ribosomal subunit;0.00066230401639414!GO:0005763;mitochondrial small ribosomal subunit;0.00066230401639414!GO:0000075;cell cycle checkpoint;0.000671201880974586!GO:0051246;regulation of protein metabolic process;0.000672676963712201!GO:0043681;protein import into mitochondrion;0.000675606420827442!GO:0005741;mitochondrial outer membrane;0.000701036557228409!GO:0016859;cis-trans isomerase activity;0.000755539703883057!GO:0042981;regulation of apoptosis;0.000789129191833472!GO:0004004;ATP-dependent RNA helicase activity;0.00079139058357825!GO:0043067;regulation of programmed cell death;0.000836741673448674!GO:0008270;zinc ion binding;0.000838452720970911!GO:0006352;transcription initiation;0.000838452720970911!GO:0008033;tRNA processing;0.000844788088481017!GO:0030658;transport vesicle membrane;0.000870073753770842!GO:0003684;damaged DNA binding;0.000875578757857642!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000909426789467847!GO:0031982;vesicle;0.000917554943324041!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000950519398663226!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000953551279625571!GO:0003746;translation elongation factor activity;0.0009577303801816!GO:0004576;oligosaccharyl transferase activity;0.00106896309530848!GO:0003924;GTPase activity;0.00110345607607341!GO:0007006;mitochondrial membrane organization and biogenesis;0.00116566485455961!GO:0006695;cholesterol biosynthetic process;0.00117013136423939!GO:0031410;cytoplasmic vesicle;0.00117013136423939!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00121112102008044!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00121112102008044!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00121112102008044!GO:0005788;endoplasmic reticulum lumen;0.00125290225216432!GO:0000059;protein import into nucleus, docking;0.00125402037033547!GO:0030118;clathrin coat;0.00133158078569131!GO:0008250;oligosaccharyl transferase complex;0.0013742571440079!GO:0006891;intra-Golgi vesicle-mediated transport;0.00139451893233688!GO:0051920;peroxiredoxin activity;0.00140635670851129!GO:0015992;proton transport;0.00141148733571972!GO:0006611;protein export from nucleus;0.00144908487802886!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0014750523520652!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00148382787708818!GO:0043069;negative regulation of programmed cell death;0.00149066299246493!GO:0006302;double-strand break repair;0.00149973174944185!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00150006833643165!GO:0045047;protein targeting to ER;0.00150006833643165!GO:0045454;cell redox homeostasis;0.00155043757270953!GO:0043492;ATPase activity, coupled to movement of substances;0.00158181643780358!GO:0008022;protein C-terminus binding;0.00159801070802879!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00159949634497334!GO:0030660;Golgi-associated vesicle membrane;0.00160067996149413!GO:0006818;hydrogen transport;0.00168106147006725!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00169471243898393!GO:0006916;anti-apoptosis;0.00171508740206177!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00178404956622265!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00200163400555507!GO:0006284;base-excision repair;0.00200163400555507!GO:0032508;DNA duplex unwinding;0.00200163400555507!GO:0032392;DNA geometric change;0.00200163400555507!GO:0065009;regulation of a molecular function;0.00215432202748902!GO:0003711;transcription elongation regulator activity;0.00219144873275637!GO:0043066;negative regulation of apoptosis;0.0022037771952335!GO:0046983;protein dimerization activity;0.00224600444272635!GO:0046966;thyroid hormone receptor binding;0.00227173228455692!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00233831460744626!GO:0016251;general RNA polymerase II transcription factor activity;0.00235857870428502!GO:0008312;7S RNA binding;0.00245342206956856!GO:0006091;generation of precursor metabolites and energy;0.00248633272222288!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00249591614733419!GO:0043488;regulation of mRNA stability;0.00251661379761872!GO:0043487;regulation of RNA stability;0.00251661379761872!GO:0006506;GPI anchor biosynthetic process;0.00253387483820429!GO:0032561;guanyl ribonucleotide binding;0.00255370129688295!GO:0019001;guanyl nucleotide binding;0.00255370129688295!GO:0006268;DNA unwinding during replication;0.00274362942673215!GO:0016407;acetyltransferase activity;0.0028108323922299!GO:0015631;tubulin binding;0.00285566007342015!GO:0008094;DNA-dependent ATPase activity;0.00286212223626253!GO:0030133;transport vesicle;0.00287779122375624!GO:0030119;AP-type membrane coat adaptor complex;0.00301491706379492!GO:0031124;mRNA 3'-end processing;0.00301491706379492!GO:0007052;mitotic spindle organization and biogenesis;0.00310370127228242!GO:0030127;COPII vesicle coat;0.00315703276495521!GO:0012507;ER to Golgi transport vesicle membrane;0.00315703276495521!GO:0030134;ER to Golgi transport vesicle;0.00324170356925762!GO:0033673;negative regulation of kinase activity;0.00334225004196464!GO:0006469;negative regulation of protein kinase activity;0.00334225004196464!GO:0051087;chaperone binding;0.00340902280203739!GO:0044452;nucleolar part;0.00342124895555779!GO:0006354;RNA elongation;0.00343676724636915!GO:0019783;small conjugating protein-specific protease activity;0.00343676724636915!GO:0008276;protein methyltransferase activity;0.00349247101629361!GO:0008139;nuclear localization sequence binding;0.00352733219628477!GO:0016584;nucleosome positioning;0.00364726345471671!GO:0048523;negative regulation of cellular process;0.0036804232711897!GO:0009165;nucleotide biosynthetic process;0.00371903341470562!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00373378375550614!GO:0050662;coenzyme binding;0.0039621628646441!GO:0035258;steroid hormone receptor binding;0.00399180853556732!GO:0006505;GPI anchor metabolic process;0.00439739662209155!GO:0031625;ubiquitin protein ligase binding;0.00443094096250631!GO:0004843;ubiquitin-specific protease activity;0.00461267856552751!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00472606868898186!GO:0016281;eukaryotic translation initiation factor 4F complex;0.004766761019195!GO:0016197;endosome transport;0.00481604154868205!GO:0016790;thiolester hydrolase activity;0.00481604154868205!GO:0030663;COPI coated vesicle membrane;0.00505670555322579!GO:0030126;COPI vesicle coat;0.00505670555322579!GO:0046914;transition metal ion binding;0.00506824602303243!GO:0030131;clathrin adaptor complex;0.00514033883506984!GO:0005637;nuclear inner membrane;0.0052929130573395!GO:0051348;negative regulation of transferase activity;0.00537593213715831!GO:0005905;coated pit;0.00547968091938586!GO:0005684;U2-dependent spliceosome;0.00550822882456327!GO:0003678;DNA helicase activity;0.00556914945957432!GO:0007059;chromosome segregation;0.00557961231028064!GO:0018196;peptidyl-asparagine modification;0.00560915326245315!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00560915326245315!GO:0000228;nuclear chromosome;0.00600589591659856!GO:0006405;RNA export from nucleus;0.00604651225746957!GO:0000049;tRNA binding;0.00607525237206226!GO:0004221;ubiquitin thiolesterase activity;0.00609663956434055!GO:0065007;biological regulation;0.00616558721188823!GO:0022406;membrane docking;0.00616558721188823!GO:0048278;vesicle docking;0.00616558721188823!GO:0046467;membrane lipid biosynthetic process;0.00620942074766495!GO:0022890;inorganic cation transmembrane transporter activity;0.00624516956468994!GO:0000082;G1/S transition of mitotic cell cycle;0.00627177755114653!GO:0043414;biopolymer methylation;0.00683377645649268!GO:0040029;regulation of gene expression, epigenetic;0.00701873058730728!GO:0000922;spindle pole;0.00721125712478711!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00727397002332556!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00727397002332556!GO:0030137;COPI-coated vesicle;0.00752627636779696!GO:0005758;mitochondrial intermembrane space;0.00758964735901098!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00780784048448187!GO:0051052;regulation of DNA metabolic process;0.00804292057854021!GO:0005885;Arp2/3 protein complex;0.00845555823165075!GO:0006892;post-Golgi vesicle-mediated transport;0.00846171919810584!GO:0000792;heterochromatin;0.0085167457367127!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00883152076247516!GO:0015002;heme-copper terminal oxidase activity;0.00883152076247516!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00883152076247516!GO:0004129;cytochrome-c oxidase activity;0.00883152076247516!GO:0006607;NLS-bearing substrate import into nucleus;0.00924773323442803!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00964995048834716!GO:0046483;heterocycle metabolic process;0.00974346845426914!GO:0008601;protein phosphatase type 2A regulator activity;0.0101482456952995!GO:0030880;RNA polymerase complex;0.0103361454246891!GO:0030521;androgen receptor signaling pathway;0.010363262254748!GO:0042393;histone binding;0.0103757762187243!GO:0031970;organelle envelope lumen;0.0104311235610286!GO:0008017;microtubule binding;0.0104546707363863!GO:0005874;microtubule;0.0106892034914012!GO:0044454;nuclear chromosome part;0.0109270981663669!GO:0006376;mRNA splice site selection;0.0112083759748738!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0112083759748738!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0112701580073162!GO:0006289;nucleotide-excision repair;0.0112701580073162!GO:0008610;lipid biosynthetic process;0.0112701580073162!GO:0005083;small GTPase regulator activity;0.0116008553392685!GO:0032259;methylation;0.011652057321635!GO:0016279;protein-lysine N-methyltransferase activity;0.0119711393080095!GO:0018024;histone-lysine N-methyltransferase activity;0.0119711393080095!GO:0016278;lysine N-methyltransferase activity;0.0119711393080095!GO:0006904;vesicle docking during exocytosis;0.0120422648210927!GO:0007265;Ras protein signal transduction;0.0121651282610128!GO:0043284;biopolymer biosynthetic process;0.0121778482244653!GO:0031529;ruffle organization and biogenesis;0.0121778482244653!GO:0006595;polyamine metabolic process;0.0121894632140497!GO:0007017;microtubule-based process;0.0122053795176834!GO:0005791;rough endoplasmic reticulum;0.0125895009805107!GO:0031123;RNA 3'-end processing;0.0133074038199559!GO:0006378;mRNA polyadenylation;0.0133074038199559!GO:0008287;protein serine/threonine phosphatase complex;0.0136086241735619!GO:0045893;positive regulation of transcription, DNA-dependent;0.0136086241735619!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0136086241735619!GO:0030659;cytoplasmic vesicle membrane;0.0136210430138316!GO:0005669;transcription factor TFIID complex;0.0136660022243745!GO:0005869;dynactin complex;0.0137252419757162!GO:0051540;metal cluster binding;0.0138910224589242!GO:0051536;iron-sulfur cluster binding;0.0138910224589242!GO:0000096;sulfur amino acid metabolic process;0.0140512500334664!GO:0045892;negative regulation of transcription, DNA-dependent;0.0142636171768542!GO:0000209;protein polyubiquitination;0.0149579766547766!GO:0016301;kinase activity;0.0156498918337954!GO:0005773;vacuole;0.0157053826187347!GO:0000287;magnesium ion binding;0.0158346143267097!GO:0006367;transcription initiation from RNA polymerase II promoter;0.016062829878484!GO:0032940;secretion by cell;0.0162544994667624!GO:0042026;protein refolding;0.0163567037069912!GO:0048487;beta-tubulin binding;0.0163718726912436!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0164065970884342!GO:0008234;cysteine-type peptidase activity;0.0165716672992978!GO:0006516;glycoprotein catabolic process;0.0169285238716066!GO:0000118;histone deacetylase complex;0.0169285238716066!GO:0006730;one-carbon compound metabolic process;0.0169285238716066!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0169300341237578!GO:0016044;membrane organization and biogenesis;0.0169992445276059!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0170367527793521!GO:0006144;purine base metabolic process;0.0175920675826116!GO:0031901;early endosome membrane;0.0176294809433126!GO:0030518;steroid hormone receptor signaling pathway;0.0179496044249047!GO:0009112;nucleobase metabolic process;0.0180425617075619!GO:0045941;positive regulation of transcription;0.0181080874285466!GO:0031461;cullin-RING ubiquitin ligase complex;0.0183831553095239!GO:0006497;protein amino acid lipidation;0.0186624212920052!GO:0043022;ribosome binding;0.0187403522935651!GO:0030132;clathrin coat of coated pit;0.019016681831191!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0195356754675699!GO:0000428;DNA-directed RNA polymerase complex;0.0195356754675699!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.019661994774111!GO:0005832;chaperonin-containing T-complex;0.0197995978173503!GO:0004527;exonuclease activity;0.0201370538509608!GO:0004347;glucose-6-phosphate isomerase activity;0.0202370195060038!GO:0007088;regulation of mitosis;0.0211898613780617!GO:0044433;cytoplasmic vesicle part;0.0212715061663416!GO:0016125;sterol metabolic process;0.0213685094111394!GO:0051287;NAD binding;0.0215535431438529!GO:0016272;prefoldin complex;0.0216061265440018!GO:0042987;amyloid precursor protein catabolic process;0.0217210893057848!GO:0043433;negative regulation of transcription factor activity;0.0218230502530184!GO:0032200;telomere organization and biogenesis;0.0218264197645358!GO:0000723;telomere maintenance;0.0218264197645358!GO:0050178;phenylpyruvate tautomerase activity;0.0220905623922487!GO:0051338;regulation of transferase activity;0.022126821150199!GO:0000159;protein phosphatase type 2A complex;0.0224442212792974!GO:0000152;nuclear ubiquitin ligase complex;0.02372154103281!GO:0009303;rRNA transcription;0.0239532028268661!GO:0030742;GTP-dependent protein binding;0.0243095515287916!GO:0030027;lamellipodium;0.0248462458797459!GO:0031371;ubiquitin conjugating enzyme complex;0.0252156058583734!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0253015647853292!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0253932340909252!GO:0010257;NADH dehydrogenase complex assembly;0.0253932340909252!GO:0033108;mitochondrial respiratory chain complex assembly;0.0253932340909252!GO:0043407;negative regulation of MAP kinase activity;0.0257049647521375!GO:0003725;double-stranded RNA binding;0.0259001575583759!GO:0000323;lytic vacuole;0.0259864605009442!GO:0005764;lysosome;0.0259864605009442!GO:0030508;thiol-disulfide exchange intermediate activity;0.0259864605009442!GO:0044262;cellular carbohydrate metabolic process;0.0261612073062879!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0262016566583497!GO:0048037;cofactor binding;0.0276065907409648!GO:0004518;nuclease activity;0.0276065907409648!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0276322999552228!GO:0006310;DNA recombination;0.028299019406958!GO:0005784;translocon complex;0.0286024975446327!GO:0042770;DNA damage response, signal transduction;0.0288355179375757!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0288643729654093!GO:0007243;protein kinase cascade;0.0290140367509593!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0297966315691039!GO:0042054;histone methyltransferase activity;0.0299178887571328!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0309038219138113!GO:0007004;telomere maintenance via telomerase;0.0314344108279552!GO:0009451;RNA modification;0.0314482470705783!GO:0005777;peroxisome;0.0322196852571293!GO:0042579;microbody;0.0322196852571293!GO:0012506;vesicle membrane;0.0323910232573774!GO:0044438;microbody part;0.0329712790775673!GO:0044439;peroxisomal part;0.0329712790775673!GO:0030911;TPR domain binding;0.0333063959026515!GO:0000726;non-recombinational repair;0.0336407127086732!GO:0008180;signalosome;0.0340009174137377!GO:0004722;protein serine/threonine phosphatase activity;0.0340696853195022!GO:0050790;regulation of catalytic activity;0.0340799300245402!GO:0043549;regulation of kinase activity;0.0346246564320887!GO:0042979;ornithine decarboxylase regulator activity;0.0348368585545898!GO:0031628;opioid receptor binding;0.0348838559501682!GO:0031852;mu-type opioid receptor binding;0.0348838559501682!GO:0048519;negative regulation of biological process;0.0358693930920099!GO:0019318;hexose metabolic process;0.0359596919934361!GO:0005996;monosaccharide metabolic process;0.036575136030446!GO:0000781;chromosome, telomeric region;0.0369573577323063!GO:0000339;RNA cap binding;0.037404206939131!GO:0006066;alcohol metabolic process;0.037404206939131!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0377610369106671!GO:0051059;NF-kappaB binding;0.0389130141309254!GO:0008097;5S rRNA binding;0.0389482252670967!GO:0008536;Ran GTPase binding;0.0390280999652204!GO:0008361;regulation of cell size;0.0391845178828736!GO:0051539;4 iron, 4 sulfur cluster binding;0.0394927795004764!GO:0032039;integrator complex;0.0398709249565301!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0414005077761399!GO:0007010;cytoskeleton organization and biogenesis;0.0422843627869687!GO:0005092;GDP-dissociation inhibitor activity;0.0424464981178963!GO:0008652;amino acid biosynthetic process;0.0425981283965335!GO:0008299;isoprenoid biosynthetic process;0.0425981283965335!GO:0031902;late endosome membrane;0.0428042160613945!GO:0000790;nuclear chromatin;0.0445239486832881!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0450545906997772!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0450545906997772!GO:0055083;monovalent inorganic anion homeostasis;0.0450545906997772!GO:0055064;chloride ion homeostasis;0.0450545906997772!GO:0030644;cellular chloride ion homeostasis;0.0450545906997772!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0451048643493702!GO:0042158;lipoprotein biosynthetic process;0.0452891967018339!GO:0051656;establishment of organelle localization;0.0455920842653193!GO:0009081;branched chain family amino acid metabolic process;0.0459829185540854!GO:0007093;mitotic cell cycle checkpoint;0.046756547580527!GO:0006644;phospholipid metabolic process;0.0469737535442109!GO:0003887;DNA-directed DNA polymerase activity;0.0470129128700741!GO:0000123;histone acetyltransferase complex;0.047079888393956!GO:0009083;branched chain family amino acid catabolic process;0.0473504845216697!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0475641304515768!GO:0030125;clathrin vesicle coat;0.0477626170353577!GO:0030665;clathrin coated vesicle membrane;0.0477626170353577!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0483391303134581!GO:0004448;isocitrate dehydrogenase activity;0.0486529220907842!GO:0007034;vacuolar transport;0.0489373202370858!GO:0016049;cell growth;0.049307593913393!GO:0006010;glucose 6-phosphate utilization;0.0493625156500823!GO:0005047;signal recognition particle binding;0.0496914726333977
|sample_id=10419
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=breast
|top_motifs=ZEB1:2.28011194717;VSX1,2:2.01107721212;SNAI1..3:1.88524591428;MYOD1:1.82323102979;FOXQ1:1.66527553243;NFY{A,B,C}:1.62709208286;FOXA2:1.56444170504;RBPJ:1.43250354671;TOPORS:1.25961521968;PITX1..3:1.24842663179;LMO2:1.224758103;ARID5B:1.22031706561;FOXN1:1.18199801343;IKZF1:1.1777204515;TEF:1.17227039804;NKX2-3_NKX2-5:1.12979705192;NRF1:1.05496596196;PDX1:1.048657386;FOX{F1,F2,J1}:1.03397694696;POU2F1..3:1.01741560447;CRX:1.00720370089;ELK1,4_GABP{A,B1}:0.992598565314;ONECUT1,2:0.988704007716;ADNP_IRX_SIX_ZHX:0.939679654549;STAT1,3:0.939615811883;HOX{A4,D4}:0.930515466709;bHLH_family:0.923730578444;DBP:0.871090593961;PBX1:0.844880633634;RORA:0.768548655625;SP1:0.737499232985;LHX3,4:0.729955654458;NKX6-1,2:0.637497848816;ZNF143:0.634336161916;FOXP1:0.624261787264;RFX2..5_RFXANK_RFXAP:0.616388584844;ATF2:0.599862685988;SOX{8,9,10}:0.591305974585;TFDP1:0.567472313814;E2F1..5:0.512343527943;PAX6:0.510710344229;STAT5{A,B}:0.509297488732;BREu{core}:0.492147908093;ZFP161:0.443094414153;HIF1A:0.438699136566;ESR1:0.430040582091;MYB:0.407628681176;NFIL3:0.3874969076;OCT4_SOX2{dimer}:0.379289029575;SOX5:0.365683796616;MED-1{core}:0.342193661129;HOX{A5,B5}:0.338252533231;FOXO1,3,4:0.332326649455;NANOG:0.322940710289;YY1:0.287076145953;PAX5:0.259640844094;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.245701913768;GFI1:0.245662521155;PPARG:0.214251838037;ATF6:0.200928152514;PAX8:0.196002848326;TEAD1:0.191351551406;GFI1B:0.174593924613;CDC5L:0.172342806101;EVI1:0.168561841673;FOX{I1,J2}:0.166937923694;TFAP2{A,C}:0.14902499413;AHR_ARNT_ARNT2:0.148347969019;NKX2-1,4:0.129526671513;RFX1:0.10973241821;NR1H4:0.093655652631;NFIX:0.0753380929426;AR:0.0671195149121;HOX{A6,A7,B6,B7}:0.0455346939474;NKX3-2:0.0224283504795;EBF1:0.0156554423561;ZNF148:0.0139413236677;ELF1,2,4:0.00823614441322;IKZF2:0.00249232639879;HNF1A:0.00103261433665;TBX4,5:-0.00201009887516;PAX2:-0.00621210463525;GATA6:-0.00989681053349;TFAP2B:-0.0110227983021;POU5F1:-0.0119769358486;POU1F1:-0.0123887856724;HIC1:-0.0183236648701;LEF1_TCF7_TCF7L1,2:-0.0184658213246;GTF2A1,2:-0.0187483870245;TLX1..3_NFIC{dimer}:-0.0285854106213;ATF4:-0.0333953117394;TBP:-0.038579177632;CUX2:-0.0393637820048;SOX17:-0.0608026954802;ATF5_CREB3:-0.071070587928;FOX{D1,D2}:-0.0748142122254;FOSL2:-0.0873662460824;HNF4A_NR2F1,2:-0.0889870508734;NKX3-1:-0.0904701057517;ZBTB6:-0.11549283717;HAND1,2:-0.11577058907;PAX3,7:-0.120408612832;EP300:-0.134715088365;RXRA_VDR{dimer}:-0.140111808947;FOXM1:-0.140950364601;TP53:-0.144639998968;PRRX1,2:-0.152627667119;MAFB:-0.166357088169;FOXP3:-0.184670722505;HOXA9_MEIS1:-0.191440720065;CDX1,2,4:-0.195147328715;EGR1..3:-0.201990989425;GTF2I:-0.216189106524;MEF2{A,B,C,D}:-0.216520257972;FOS_FOS{B,L1}_JUN{B,D}:-0.221282160922;FOXL1:-0.222663190094;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.233083724835;ESRRA:-0.238259484695;ZIC1..3:-0.244492573509;ALX1:-0.26523429818;HLF:-0.280481265297;ZBTB16:-0.281451400999;XBP1:-0.284914873931;SOX2:-0.289171284065;TAL1_TCF{3,4,12}:-0.306768484546;MTE{core}:-0.322171669979;EN1,2:-0.324151128885;HSF1,2:-0.328403098446;NR5A1,2:-0.329727688879;NFE2L2:-0.341288933266;ZNF423:-0.349485669123;PATZ1:-0.353545906771;NR6A1:-0.362759793435;BACH2:-0.375448588349;TGIF1:-0.400044162389;NANOG{mouse}:-0.406496422916;BPTF:-0.429298135823;DMAP1_NCOR{1,2}_SMARC:-0.433613662254;MTF1:-0.457292811593;JUN:-0.478582880593;SPIB:-0.489102062876;RUNX1..3:-0.49060257009;PAX4:-0.508556328233;NFE2:-0.520250655941;NFKB1_REL_RELA:-0.521074098741;XCPE1{core}:-0.53859280269;MAZ:-0.541535753943;KLF4:-0.543617013585;TLX2:-0.552706439881;HMGA1,2:-0.558640439873;SREBF1,2:-0.590505427143;REST:-0.603658137274;SPI1:-0.613078041451;T:-0.628501953459;CEBPA,B_DDIT3:-0.667221175612;SRF:-0.716445010994;HBP1_HMGB_SSRP1_UBTF:-0.721169033891;ETS1,2:-0.728893149865;RREB1:-0.729958034672;GZF1:-0.737194114191;NHLH1,2:-0.752902662054;TFCP2:-0.756900808627;IRF7:-0.759610279976;ZNF384:-0.782935819642;MYBL2:-0.786303721755;IRF1,2:-0.807655113532;FOXD3:-0.813750753976;UFEwm:-0.836352297951;MYFfamily:-0.840729403708;ALX4:-0.848135663711;HMX1:-0.851906334566;POU3F1..4:-0.89050198281;TFAP4:-0.901846859867;GCM1,2:-0.909361934898;PAX1,9:-0.91482209921;MZF1:-0.923748620471;ZNF238:-0.926609275465;CREB1:-0.956948864159;NR3C1:-1.01894912717;POU6F1:-1.02163415222;GATA4:-1.07851381793;NFATC1..3:-1.18553803971;SPZ1:-1.26270802414;PRDM1:-1.29924626465;AIRE:-1.34774021365;STAT2,4,6:-1.35647724762;NKX2-2,8:-1.4288937926;NFE2L1:-1.51959816569;SMAD1..7,9:-1.54047406471;HES1:-1.92452317903;RXR{A,B,G}:-2.03835033977;GLI1..3:-2.42184901851
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10419-106C5;search_select_hide=table117:FF:10419-106C5
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:breast carcinoma cell line:MDA-MB-453
Species:Human (Homo sapiens)
Library ID:CNhs10736
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stageNA
sexfemale
ageunknown
cell typeunclassifiable
cell lineMDA-MB-453
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005250
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10736 CAGE DRX007838 DRR008710
Accession ID Hg19

Library idBAMCTSS
CNhs10736 DRZ000135 DRZ001520
Accession ID Hg38

Library idBAMCTSS
CNhs10736 DRZ011485 DRZ012870
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0332
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0.842
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.237
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0749
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0364
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0856
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.215
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.101
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0577
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.158
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0364
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0109
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0304
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.136
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10736

Jaspar motifP-value
MA0002.20.00873
MA0003.10.271
MA0004.10.679
MA0006.10.462
MA0007.10.533
MA0009.10.964
MA0014.10.0396
MA0017.10.0971
MA0018.20.992
MA0019.10.983
MA0024.16.86553e-4
MA0025.10.0998
MA0027.10.745
MA0028.13.45304e-4
MA0029.10.129
MA0030.10.247
MA0031.10.0831
MA0035.20.656
MA0038.10.00517
MA0039.20.00801
MA0040.10.77
MA0041.10.53
MA0042.10.577
MA0043.10.673
MA0046.10.0316
MA0047.23.79081e-5
MA0048.10.531
MA0050.16.25861e-7
MA0051.10.004
MA0052.10.125
MA0055.10.00229
MA0057.10.938
MA0058.10.546
MA0059.10.54
MA0060.11.36706e-17
MA0061.19.25525e-5
MA0062.20.00244
MA0065.20.617
MA0066.10.152
MA0067.10.607
MA0068.10.626
MA0069.10.62
MA0070.10.163
MA0071.10.792
MA0072.10.0166
MA0073.10.864
MA0074.10.308
MA0076.11.92676e-4
MA0077.10.666
MA0078.10.831
MA0079.20.198
MA0080.22.69579e-7
MA0081.10.0179
MA0083.10.0098
MA0084.10.145
MA0087.10.854
MA0088.10.881
MA0090.10.959
MA0091.10.0732
MA0092.10.13
MA0093.10.603
MA0099.24.2499e-8
MA0100.10.174
MA0101.10.00741
MA0102.20.155
MA0103.12.64162e-7
MA0104.20.106
MA0105.18.54877e-6
MA0106.10.127
MA0107.10.00212
MA0108.20.664
MA0111.10.791
MA0112.20.148
MA0113.10.939
MA0114.10.899
MA0115.10.836
MA0116.10.0193
MA0117.10.691
MA0119.10.995
MA0122.10.74
MA0124.10.343
MA0125.10.0139
MA0131.10.0329
MA0135.10.36
MA0136.10.00112
MA0137.20.262
MA0138.20.129
MA0139.10.678
MA0140.10.8
MA0141.10.331
MA0142.10.509
MA0143.10.07
MA0144.10.222
MA0145.10.686
MA0146.10.222
MA0147.10.0845
MA0148.12.41986e-5
MA0149.10.699
MA0150.10.00145
MA0152.10.871
MA0153.10.772
MA0154.10.0217
MA0155.10.101
MA0156.10.0782
MA0157.10.791
MA0159.10.671
MA0160.10.984
MA0162.10.283
MA0163.10.00441
MA0164.10.431
MA0258.10.506
MA0259.10.0431



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10736

Novel motifP-value
10.77
100.471
1000.679
1010.392
1020.919
1030.072
1040.472
1050.949
1060.00551
1070.0446
1080.975
1090.739
110.374
1100.65
1110.528
1120.146
1130.0462
1140.231
1150.205
1160.23
1170.246
1180.28
1190.959
120.721
1200.653
1210.213
1220.0881
1230.277
1240.097
1250.243
1260.969
1270.775
1280.0255
1290.887
130.113
1300.357
1310.164
1320.221
1330.277
1340.818
1350.147
1360.0977
1370.317
1380.225
1390.88
140.757
1400.144
1410.911
1420.817
1430.168
1440.0441
1450.189
1460.725
1470.334
1480.223
1490.114
150.704
1500.948
1510.287
1520.0454
1530.705
1540.882
1550.135
1560.17
1570.821
1580.971
1590.903
160.189
1600.23
1610.824
1620.761
1630.311
1640.875
1650.649
1660.0119
1670.944
1680.00152
1690.675
170.999
180.0347
190.211
20.253
200.259
210.415
220.515
230.0523
240.571
250.608
260.811
270.78
280.603
290.261
30.244
300.547
310.337
320.0588
330.93
340.134
350.254
360.529
370.0785
380.573
390.746
40.582
400.634
410.0741
420.761
430.0918
440.183
450.966
460.244
470.904
480.892
490.536
50.373
500.889
510.685
520.222
530.725
540.672
550.473
560.494
570.858
580.435
590.0158
60.313
600.077
610.614
620.115
630.937
640.99
650.258
660.00362
670.224
680.0612
690.515
70.874
700.255
710.449
720.341
730.224
740.18
750.203
760.893
770.237
780.57
790.0132
80.122
800.193
810.101
820.0547
830.469
840.912
850.0517
860.658
870.168
880.614
890.268
90.106
900.162
910.179
920.0797
930.411
940.318
950.315
960.0784
970.622
980.253
990.692



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10736


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
1612 (breast cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001443 (chest)
0003100 (female organism)
0000915 (thoracic segment of trunk)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0104086 (mammary gland tumor cell line sample)
0100356 (breast cancer cell line sample)
0103568 (mammary gland cell line sample)
0101908 (MDA-MB-453 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0008425 (mammary ridge)
UBERON:0010316 (germ layer / neural crest)

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