Personal tools

UBERON:0008425

From FANTOM5_SSTAR

Jump to: navigation, search

Name:mammary ridge
Namespace:FANTOM
Definition:"A bandlike thickening of ectoderm in the embryo extending from just below the axilla to the inguinal region and giving rise to the mammary glands[Stedmans]. One of two parallel lines, formed by thickenings of the epidermis (the mammary ridge) along the ventral surface of mammals of both sexes. They extend from the upper limbs (arms) to the lower limbs (legs) and are developed in the embryo. They give rise to the mammary glands and nipples but are otherwise usually not visible in the adult. The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. These buds are either located in the thoracic region in primates, in the inguinal area in ungulates or along the entire length of the trunk in rodents and pigs. In humans, milk lines appear in the seventh week of embryonic development. After initial development of the milk lines they go into remission. Nipples develop on the milk lines of mammals. Most humans have two nipples, but in some cases more than two will develop. In most cases, these 'third nipples'遯ｶ陏､nd sometimes fourth nipple遯ｶ豕｢row along the milk line[WP]." Wikipedia:Milk_line
Xrefs:
links:
EMAPA:18541
Synonyms: "mammary fold" EXACT [1]
"milk line" RELATED [Wikipedia:Milk_line]
Comments:split ridge and milk line?

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0000924(ectoderm)
part_of:UBERON:0000922(embryo),UBERON:0002100(trunk)



Children

develops from:UBERON:0005311 (mammary placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008425 (mammary ridge), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_3618011033a9cd9f4d30ed0506a37c9fp4@WDR66
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_3618011033a9cd9f4d30ed0506a37c9fp4@WDR66
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_8dbdaa56e9bd46f18463c09ebf710781p4@CASP14
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_8dbdaa56e9bd46f18463c09ebf710781p4@CASP14
1.87e-86FFCP PHASE2:Mm9::chr5:88123708..88123719,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88123708..88123719, -
1.87e-86FFCP PHASE1:Mm9::chr5:88215607..88215628,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88215607..88215628, +
1.87e-86FFCP PHASE1:Mm9::chr5:88107041..88107085,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88107041..88107085, +
1.87e-86FFCP PHASE2:Mm9::chr4:118636797..118636805,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr4:118636797..118636805, +
1.87e-86FFCP PHASE1:Mm9::chr15:103394653..103394683,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:103394653..103394683, -
1.87e-86FFCP PHASE2:Mm9::chr5:88207188..88207211,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88207188..88207211, +
1.87e-86FFCP PHASE2:Mm9::chr19:4104421..4104423,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr19:4104421..4104423, +
1.87e-86FFCP PHASE1:Mm9::chr13:23550306..23550308,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr13:23550306..23550308, -
1.87e-86FFCP PHASE1:Mm9::chr11:109658712..109658715,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr11:109658712..109658715, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393703..103393706,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:103393703..103393706, -
1.87e-86FFCP PHASE2:Mm9::chr5:88106613..88106646,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88106613..88106646, +
1.87e-86FFCP PHASE1:Mm9::chr7:75913214..75913218,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr7:75913214..75913218, -
1.87e-86FFCP PHASE1:Mm9::chr18:15483458..15483466,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr18:15483458..15483466, +
1.87e-86FFCP PHASE2:Mm9::chr15:99366344..99366348,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:99366344..99366348, -
1.87e-86FFCP PHASE1:Mm9::chr6:35361971..35361978,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr6:35361971..35361978, +
1.87e-86FFCP PHASE1:Mm9::chr4:118636825..118636828,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr4:118636825..118636828, +
1.87e-86FFCP PHASE2:Mm9::chr11:6537276..6537305,-#_7e60f1a5829a18a63cf53355e20b8fd2p2@Wap
1.87e-86FFCP PHASE1:Mm9::chr5:88103072..88103090,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88103072..88103090, +
1.87e-86FFCP PHASE2:Mm9::chr5:88359054..88359083,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88359054..88359083, -
1.87e-86FFCP PHASE1:Mm9::chr4:43404975..43404982,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr4:43404975..43404982, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393425..103393435,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:103393425..103393435, -
1.87e-86FFCP PHASE2:Mm9::chr6:35361971..35361978,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr6:35361971..35361978, +
1.87e-86FFCP PHASE2:Mm9::chr5:88203952..88203961,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88203952..88203961, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358825..88358828,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88358825..88358828, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123649..88123664,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88123649..88123664, -
1.87e-86FFCP PHASE2:Mm9::chr13:90032838..90032840,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr13:90032838..90032840, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393267..103393277,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:103393267..103393277, -
1.87e-86FFCP PHASE2:Mm9::chr5:88100568..88100584,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88100568..88100584, -
1.87e-86FFCP PHASE1:Mm9::chr5:151567394..151567401,+#_7e60f1a5829a18a63cf53355e20b8fd2p9@Pds5b
1.87e-86FFCP PHASE2:Mm9::chr5:88215676..88215679,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88215676..88215679, +
1.87e-86FFCP PHASE1:Mm9::chr11:6535604..6535612,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr11:6535604..6535612, +
1.87e-86FFCP PHASE2:Mm9::chr11:100614219..100614221,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr11:100614219..100614221, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123602..88123609,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88123602..88123609, -
1.87e-86FFCP PHASE1:Mm9::chrX:158813399..158813404,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chrX:158813399..158813404, -
1.87e-86FFCP PHASE1:Mm9::chr5:88210841..88210848,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88210841..88210848, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393227..103393240,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:103393227..103393240, -
1.87e-86FFCP PHASE2:Mm9::chr5:88125078..88125099,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88125078..88125099, -
1.87e-86FFCP PHASE1:Mm9::chr5:88240375..88240378,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88240375..88240378, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121858..88121866,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88121858..88121866, -
1.87e-86FFCP PHASE2:Mm9::chr5:88096268..88096283,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88096268..88096283, +
1.87e-86FFCP PHASE1:Mm9::chr3:155015789..155015791,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr3:155015789..155015791, -
1.87e-86FFCP PHASE2:Mm9::chr15:98311094..98311111,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:98311094..98311111, -
1.87e-86FFCP PHASE2:Mm9::chr5:88213564..88213565,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88213564..88213565, +
1.87e-86FFCP PHASE1:Mm9::chr5:88126303..88126323,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88126303..88126323, -
1.87e-86FFCP PHASE1:Mm9::chr11:48162734..48162736,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr11:48162734..48162736, -
1.87e-86FFCP PHASE2:Mm9::chr4:43404975..43404982,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr4:43404975..43404982, +
1.87e-86FFCP PHASE2:Mm9::chr5:88121815..88121823,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88121815..88121823, -
1.87e-86FFCP PHASE2:Mm9::chr8:52461156..52461158,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr8:52461156..52461158, +
1.87e-86FFCP PHASE1:Mm9::chr5:88207974..88207986,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88207974..88207986, +
1.87e-86FFCP PHASE1:Mm9::chr5:88097629..88097633,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88097629..88097633, +
1.87e-86FFCP PHASE1:Mm9::chr1:193093195..193093197,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr1:193093195..193093197, -
1.87e-86FFCP PHASE1:Mm9::chr18:6733777..6733786,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr18:6733777..6733786, +
1.87e-86FFCP PHASE2:Mm9::chr5:88358889..88358911,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88358889..88358911, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123793..88123819,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88123793..88123819, +
1.87e-86FFCP PHASE2:Mm9::chr4:118634204..118634217,+#_7e60f1a5829a18a63cf53355e20b8fd2p3@Lao1
1.87e-86FFCP PHASE1:Mm9::chr5:88215680..88215714,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88215680..88215714, -
1.87e-86FFCP PHASE1:Mm9::chr5:88109869..88109894,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88109869..88109894, +
1.87e-86FFCP PHASE2:Mm9::chr4:118640598..118640603,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr4:118640598..118640603, -
1.87e-86FFCP PHASE1:Mm9::chr16:93598605..93598606,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr16:93598605..93598606, -
1.87e-86FFCP PHASE2:Mm9::chr5:88209161..88209183,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88209161..88209183, -
1.87e-86FFCP PHASE2:Mm9::chr16:93598605..93598606,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr16:93598605..93598606, -
1.87e-86FFCP PHASE1:Mm9::chr5:88359113..88359133,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88359113..88359133, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123891..88123910,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88123891..88123910, +
1.87e-86FFCP PHASE2:Mm9::chr3:155015789..155015791,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr3:155015789..155015791, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393830..103393851,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:103393830..103393851, +
1.87e-86FFCP PHASE2:Mm9::chr5:88109040..88109079,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88109040..88109079, +
1.87e-86FFCP PHASE1:Mm9::chr4:118634330..118634340,+#_7e60f1a5829a18a63cf53355e20b8fd2p4@Lao1
1.87e-86FFCP PHASE1:Mm9::chr15:98312614..98312624,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:98312614..98312624, -
1.87e-86FFCP PHASE1:Mm9::chr6:51296751..51296773,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr6:51296751..51296773, -
1.87e-86FFCP PHASE1:Mm9::chr4:118640761..118640774,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr4:118640761..118640774, +
1.87e-86FFCP PHASE1:Mm9::chr5:88213579..88213594,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88213579..88213594, +
1.87e-86FFCP PHASE1:Mm9::chr5:88104060..88104087,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88104060..88104087, -
1.87e-86FFCP PHASE1:Mm9::chr1:40637185..40637194,+#_7e60f1a5829a18a63cf53355e20b8fd2p6@Slc9a4
1.87e-86FFCP PHASE1:Mm9::chr7:109210996..109211006,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr7:109210996..109211006, -
1.87e-86FFCP PHASE1:Mm9::chr2:93360875..93360880,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr2:93360875..93360880, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393812..103393824,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:103393812..103393824, -
1.87e-86FFCP PHASE2:Mm9::chr3:79647358..79647364,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr3:79647358..79647364, -
1.87e-86FFCP PHASE1:Mm9::chr5:88358893..88358897,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88358893..88358897, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123708..88123719,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88123708..88123719, -
1.87e-86FFCP PHASE2:Mm9::chr11:109658667..109658675,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr11:109658667..109658675, -
1.87e-86FFCP PHASE2:Mm9::chr5:88103244..88103281,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88103244..88103281, -
1.87e-86FFCP PHASE2:Mm9::chr2:164568599..164568608,-#_7e60f1a5829a18a63cf53355e20b8fd2p8@Wfdc3
1.87e-86FFCP PHASE2:Mm9::chr8:47396093..47396097,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr8:47396093..47396097, +
1.87e-86FFCP PHASE2:Mm9::chr15:81082279..81082303,-#_7e60f1a5829a18a63cf53355e20b8fd2p1@uc007wwj.1
1.87e-86FFCP PHASE2:Mm9::chr5:88217649..88217662,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88217649..88217662, -
1.87e-86FFCP PHASE1:Mm9::chr6:137412973..137412974,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr6:137412973..137412974, +
1.87e-86FFCP PHASE1:Mm9::chr4:118636395..118636401,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr4:118636395..118636401, +
1.87e-86FFCP PHASE2:Mm9::chr11:6535604..6535612,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr11:6535604..6535612, +
1.87e-86FFCP PHASE2:Mm9::chr7:75913214..75913218,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr7:75913214..75913218, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123674..88123680,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88123674..88123680, -
1.87e-86FFCP PHASE2:Mm9::chr2:28418029..28418047,+#_7e60f1a5829a18a63cf53355e20b8fd2p@chr2:28418029..28418047, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393352..103393360,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr15:103393352..103393360, -
1.87e-86FFCP PHASE2:Mm9::chr5:88127079..88127081,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88127079..88127081, -
1.87e-86FFCP PHASE1:Mm9::chr5:88357286..88357299,+#_7e60f1a5829a18a63cf53355e20b8fd2p4@Csn3
1.87e-86FFCP PHASE1:Mm9::chr5:88123593..88123599,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr5:88123593..88123599, -
1.87e-86FFCP PHASE1:Mm9::chr12:52131163..52131171,-#_7e60f1a5829a18a63cf53355e20b8fd2p@chr12:52131163..52131171, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0008425&oldid=3277931"