FF:10419-106C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005250 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007838;DRR008710;DRZ000135;DRZ001520;DRZ011485;DRZ012870 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0001443,UBERON:0003100,UBERON:0000915,UBERON:0002330 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:5093,DOID:305,DOID:1612 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:5093,DOID:305,DOID:1612 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100816,FF:0104086,FF:0100356,FF:0103568,FF:0101908 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:34524093..34524135,-!p1@SPDEF!2.80!629.19!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!2.63!512.78!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!2.54!348.79!FOXA1;;chr11:34642612..34642646,+!p1@EHF!2.35!225.12!EHF;;chr6:50786591..50786614,+!p1@TFAP2B!2.28!188.56!TFAP2B;;chr6:50786509..50786527,+!p5@TFAP2B!2.15!141.42!TFAP2B;;chr6:50786547..50786564,+!p3@TFAP2B!2.08!119.73!TFAP2B;;chr6:50786571..50786590,+!p2@TFAP2B!2.03!105.39!TFAP2B;;chr13:72441315..72441454,-!p1@DACH1!2.00!191.19!DACH1;;chr6:10415276..10415341,-!p2@TFAP2A!1.97!111.51!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.93!83.79!TFAP2A;;chr8:116681409..116681431,-!p2@TRPS1!1.83!175.88!TRPS1;;chr10:8095593..8095625,+!p3@GATA3!1.81!74.43!GATA3;;chr11:34645791..34645836,+!p3@EHF!1.81!64.20!EHF;;chrX:66763856..66763896,+!p1@AR!1.80!87.90!AR;;chr6:10412600..10412637,-!p1@TFAP2A!1.76!92.18!TFAP2A;;chr2:45236540..45236577,-!p1@SIX2!1.74!53.53!SIX2;;chr1:153940716..153940739,+!p4@CREB3L4!1.72!51.78!CREB3L4;;chr6:10419768..10419819,-!p6@TFAP2A!1.72!50.99!TFAP2A;;chr11:120107344..120107351,+!p1@POU2F3!1.69!57.02!POU2F3;;chr8:102504651..102504683,+!p1@GRHL2!1.69!47.67!GRHL2;;chr6:50786479..50786490,+!p6@TFAP2B!1.67!46.09!TFAP2B;;chr6:50786414..50786426,+!p7@TFAP2B!1.64!42.42!TFAP2B;;chr10:8096772..8096787,+!p2@GATA3!1.62!47.67!GATA3;;chr6:10419884..10419898,-!p11@TFAP2A!1.60!39.27!TFAP2A;;chr1:61547894..61547968,+!p2@NFIA!1.59!107.49!NFIA;;chr1:201979743..201979762,+!p1@ELF3!1.59!37.52!ELF3;;chr12:54378923..54378966,+!p1@HOXC10!1.57!36.56!HOXC10;;chr14:38064590..38064606,-!p2@FOXA1!1.57!36.47!FOXA1;;chr6:50789717..50789729,+!p4@TFAP2B!1.57!36.21!TFAP2B;;chr17:17726907..17726958,-!p2@SREBF1!1.54!198.01!SREBF1;;chr18:45663490..45663528,-!p2@ZBTB7C!1.54!33.32!ZBTB7C;;chr1:164528687..164528711,+!p6@PBX1!1.53!38.13!PBX1;;chr6:34524049..34524089,-!p2@SPDEF!1.53!32.71!SPDEF;;chrX:66763914..66763933,+!p3@AR!1.53!32.54!AR;;chr1:209979467..209979494,-!p1@IRF6!1.52!36.30!IRF6;;chr6:135502501..135502546,+!p1@MYB!1.48!34.90!MYB;;chr17:53342311..53342400,+!p1@HLF!1.47!32.45!HLF;;chr5:92918919..92918942,+!p1@NR2F1!1.46!121.22!NR2F1;;chr1:164528410..164528428,+!p1@PBX1!1.45!198.53!PBX1;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!39.88!ZNF385A;;chr14:37131058..37131139,+!p1@PAX9!1.44!26.24!PAX9;;chr22:29196433..29196445,-!p4@XBP1!1.43!28.51!XBP1;;chr22:29196547..29196563,-!p2@XBP1!1.42!885.88!XBP1;;chr20:39317868..39317884,-!p1@MAFB!1.42!288.88!MAFB;;chr6:50786529..50786540,+!p8@TFAP2B!1.40!24.23!TFAP2B;;chr7:42276787..42276815,-!p1@GLI3!1.38!60.26!GLI3;;chr16:54320101..54320125,-!p4@IRX3!1.38!32.36!IRX3;;chr12:54379029..54379057,+!p2@HOXC10!1.35!21.25!HOXC10;;chr12:54366975..54367001,+!p1@HOXC11!1.34!20.82!HOXC11;;chr20:55204351..55204377,+!p1@TFAP2C!1.33!25.80!TFAP2C;;chr5:92918768..92918783,+!p8@NR2F1!1.30!18.80!NR2F1;;chr16:54964740..54964789,+!p1@IRX5!1.29!26.33!IRX5;;chr12:54384370..54384382,+!p5@HOXC6!1.29!18.28!HOXC6;;chr12:54785054..54785072,-!p4@ZNF385A!1.28!20.64!ZNF385A;;chr11:34642656..34642667,+!p2@EHF!1.27!17.49!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.25!25.98!XBP1;;chr8:116681123..116681143,-!p4@TRPS1!1.24!31.57!TRPS1;;chr5:92918860..92918871,+!p10@NR2F1!1.24!18.28!NR2F1;;chr6:10419824..10419840,-!p9@TFAP2A!1.24!16.44!TFAP2A;;chr1:24645921..24645973,+!p2@GRHL3!1.24!16.27!GRHL3;;chr14:38064495..38064506,-!p4@FOXA1!1.23!15.83!FOXA1;;chr1:24646002..24646013,+!p3@GRHL3!1.22!15.57!GRHL3;;chr19:45579725..45579743,-!p1@ZNF296!1.21!67.34!ZNF296;;chr2:10091815..10091864,+!p1@GRHL1!1.21!20.12!GRHL1;;chr17:45928521..45928539,-!p1@SP6!1.21!15.13!SP6;;chr7:156803329..156803362,-!p1@MNX1!1.20!14.78!MNX1;;chr1:61548225..61548299,+!p1@NFIA!1.19!187.69!NFIA;;chr1:204042233..204042249,+!p1@SOX13!1.18!87.90!SOX13;;chr7:149470641..149470694,-!p1@ZNF467!1.18!62.88!ZNF467;;chr5:92918894..92918912,+!p2@NR2F1!1.18!46.09!NR2F1;;chr8:116681221..116681236,-!p3@TRPS1!1.18!41.46!TRPS1;;chr19:49864746..49864780,-!p2@TEAD2!1.18!19.50!TEAD2;;chr1:44513995..44514031,+!p1@KLF17!1.18!14.26!KLF17;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.86!SIX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.22!TFAP2A;;chr19:33793430..33793447,-!p1@CEBPA!1.15!54.75!CEBPA;;chr1:164559556..164559568,+!p21@PBX1!1.15!13.12!PBX1;;chr17:80797886..80797906,-!p1@ZNF750!1.15!13.03!ZNF750;;chr14:105267423..105267443,+!p2@ZBTB42!1.14!12.86!ZBTB42;;chr11:120110863..120110908,+!p2@POU2F3!1.14!12.77!POU2F3;;chr1:164528384..164528409,+!p3@PBX1!1.13!39.18!PBX1;;chr1:164528445..164528459,+!p2@PBX1!1.13!39.01!PBX1;;chrX:66763970..66763981,+!p7@AR!1.13!12.51!AR;;chr1:61547811..61547837,+!p7@NFIA!1.12!17.93!NFIA;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.89!IRX2;;chr1:153940741..153940751,+!p7@CREB3L4!1.10!11.63!CREB3L4;;chr19:45908292..45908374,-!p1@PPP1R13L!1.09!99.62!PPP1R13L;;chr7:42276822..42276895,-!p2@GLI3!1.09!33.58!GLI3;;chr15:96869511..96869525,+!p16@NR2F2!1.09!12.51!NR2F2;;chr6:50789737..50789746,+!p10@TFAP2B!1.09!11.28!TFAP2B;;chr3:71632840..71632857,-!p10@FOXP1!1.08!22.13!FOXP1;;chr14:37132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| |expression_enrichment_score=chr6:34524093..34524135,-!p1@SPDEF!2.80!629.19!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!2.63!512.78!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!2.54!348.79!FOXA1;;chr11:34642612..34642646,+!p1@EHF!2.35!225.12!EHF;;chr6:50786591..50786614,+!p1@TFAP2B!2.28!188.56!TFAP2B;;chr6:50786509..50786527,+!p5@TFAP2B!2.15!141.42!TFAP2B;;chr6:50786547..50786564,+!p3@TFAP2B!2.08!119.73!TFAP2B;;chr6:50786571..50786590,+!p2@TFAP2B!2.03!105.39!TFAP2B;;chr13:72441315..72441454,-!p1@DACH1!2.00!191.19!DACH1;;chr6:10415276..10415341,-!p2@TFAP2A!1.97!111.51!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.93!83.79!TFAP2A;;chr8:116681409..116681431,-!p2@TRPS1!1.83!175.88!TRPS1;;chr10:8095593..8095625,+!p3@GATA3!1.81!74.43!GATA3;;chr11:34645791..34645836,+!p3@EHF!1.81!64.20!EHF;;chrX:66763856..66763896,+!p1@AR!1.80!87.90!AR;;chr6:10412600..10412637,-!p1@TFAP2A!1.76!92.18!TFAP2A;;chr2:45236540..45236577,-!p1@SIX2!1.74!53.53!SIX2;;chr1:153940716..153940739,+!p4@CREB3L4!1.72!51.78!CREB3L4;;chr6:10419768..10419819,-!p6@TFAP2A!1.72!50.99!TFAP2A;;chr11:120107344..120107351,+!p1@POU2F3!1.69!57.02!POU2F3;;chr8:102504651..102504683,+!p1@GRHL2!1.69!47.67!GRHL2;;chr6:50786479..50786490,+!p6@TFAP2B!1.67!46.09!TFAP2B;;chr6:50786414..50786426,+!p7@TFAP2B!1.64!42.42!TFAP2B;;chr10:8096772..8096787,+!p2@GATA3!1.62!47.67!GATA3;;chr6:10419884..10419898,-!p11@TFAP2A!1.60!39.27!TFAP2A;;chr1:61547894..61547968,+!p2@NFIA!1.59!107.49!NFIA;;chr1:201979743..201979762,+!p1@ELF3!1.59!37.52!ELF3;;chr12:54378923..54378966,+!p1@HOXC10!1.57!36.56!HOXC10;;chr14:38064590..38064606,-!p2@FOXA1!1.57!36.47!FOXA1;;chr6:50789717..50789729,+!p4@TFAP2B!1.57!36.21!TFAP2B;;chr17:17726907..17726958,-!p2@SREBF1!1.54!198.01!SREBF1;;chr18:45663490..45663528,-!p2@ZBTB7C!1.54!33.32!ZBTB7C;;chr1:164528687..164528711,+!p6@PBX1!1.53!38.13!PBX1;;chr6:34524049..34524089,-!p2@SPDEF!1.53!32.71!SPDEF;;chrX:66763914..66763933,+!p3@AR!1.53!32.54!AR;;chr1:209979467..209979494,-!p1@IRF6!1.52!36.30!IRF6;;chr6:135502501..135502546,+!p1@MYB!1.48!34.90!MYB;;chr17:53342311..53342400,+!p1@HLF!1.47!32.45!HLF;;chr5:92918919..92918942,+!p1@NR2F1!1.46!121.22!NR2F1;;chr1:164528410..164528428,+!p1@PBX1!1.45!198.53!PBX1;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!39.88!ZNF385A;;chr14:37131058..37131139,+!p1@PAX9!1.44!26.24!PAX9;;chr22:29196433..29196445,-!p4@XBP1!1.43!28.51!XBP1;;chr22:29196547..29196563,-!p2@XBP1!1.42!885.88!XBP1;;chr20:39317868..39317884,-!p1@MAFB!1.42!288.88!MAFB;;chr6:50786529..50786540,+!p8@TFAP2B!1.40!24.23!TFAP2B;;chr7:42276787..42276815,-!p1@GLI3!1.38!60.26!GLI3;;chr16:54320101..54320125,-!p4@IRX3!1.38!32.36!IRX3;;chr12:54379029..54379057,+!p2@HOXC10!1.35!21.25!HOXC10;;chr12:54366975..54367001,+!p1@HOXC11!1.34!20.82!HOXC11;;chr20:55204351..55204377,+!p1@TFAP2C!1.33!25.80!TFAP2C;;chr5:92918768..92918783,+!p8@NR2F1!1.30!18.80!NR2F1;;chr16:54964740..54964789,+!p1@IRX5!1.29!26.33!IRX5;;chr12:54384370..54384382,+!p5@HOXC6!1.29!18.28!HOXC6;;chr12:54785054..54785072,-!p4@ZNF385A!1.28!20.64!ZNF385A;;chr11:34642656..34642667,+!p2@EHF!1.27!17.49!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.25!25.98!XBP1;;chr8:116681123..116681143,-!p4@TRPS1!1.24!31.57!TRPS1;;chr5:92918860..92918871,+!p10@NR2F1!1.24!18.28!NR2F1;;chr6:10419824..10419840,-!p9@TFAP2A!1.24!16.44!TFAP2A;;chr1:24645921..24645973,+!p2@GRHL3!1.24!16.27!GRHL3;;chr14:38064495..38064506,-!p4@FOXA1!1.23!15.83!FOXA1;;chr1:24646002..24646013,+!p3@GRHL3!1.22!15.57!GRHL3;;chr19:45579725..45579743,-!p1@ZNF296!1.21!67.34!ZNF296;;chr2:10091815..10091864,+!p1@GRHL1!1.21!20.12!GRHL1;;chr17:45928521..45928539,-!p1@SP6!1.21!15.13!SP6;;chr7:156803329..156803362,-!p1@MNX1!1.20!14.78!MNX1;;chr1:61548225..61548299,+!p1@NFIA!1.19!187.69!NFIA;;chr1:204042233..204042249,+!p1@SOX13!1.18!87.90!SOX13;;chr7:149470641..149470694,-!p1@ZNF467!1.18!62.88!ZNF467;;chr5:92918894..92918912,+!p2@NR2F1!1.18!46.09!NR2F1;;chr8:116681221..116681236,-!p3@TRPS1!1.18!41.46!TRPS1;;chr19:49864746..49864780,-!p2@TEAD2!1.18!19.50!TEAD2;;chr1:44513995..44514031,+!p1@KLF17!1.18!14.26!KLF17;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.86!SIX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.22!TFAP2A;;chr19:33793430..33793447,-!p1@CEBPA!1.15!54.75!CEBPA;;chr1:164559556..164559568,+!p21@PBX1!1.15!13.12!PBX1;;chr17:80797886..80797906,-!p1@ZNF750!1.15!13.03!ZNF750;;chr14:105267423..105267443,+!p2@ZBTB42!1.14!12.86!ZBTB42;;chr11:120110863..120110908,+!p2@POU2F3!1.14!12.77!POU2F3;;chr1:164528384..164528409,+!p3@PBX1!1.13!39.18!PBX1;;chr1:164528445..164528459,+!p2@PBX1!1.13!39.01!PBX1;;chrX:66763970..66763981,+!p7@AR!1.13!12.51!AR;;chr1:61547811..61547837,+!p7@NFIA!1.12!17.93!NFIA;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.89!IRX2;;chr1:153940741..153940751,+!p7@CREB3L4!1.10!11.63!CREB3L4;;chr19:45908292..45908374,-!p1@PPP1R13L!1.09!99.62!PPP1R13L;;chr7:42276822..42276895,-!p2@GLI3!1.09!33.58!GLI3;;chr15:96869511..96869525,+!p16@NR2F2!1.09!12.51!NR2F2;;chr6:50789737..50789746,+!p10@TFAP2B!1.09!11.28!TFAP2B;;chr3:71632840..71632857,-!p10@FOXP1!1.08!22.13!FOXP1;;chr14:37132241..37132304,+!p3@PAX9!1.08!11.11!PAX9;;chr12:115121962..115121987,-!p1@TBX3!1.07!89.91!TBX3;;chr8:102504979..102505010,+!p2@GRHL2!1.07!10.85!GRHL2;;chr22:42229210..42229229,+!p3@SREBF2!1.06!25.01!SREBF2;;chr8:116681108..116681120,-!p9@TRPS1!1.06!13.21!TRPS1;;chr22:31739291..31739311,-!p2@PATZ1!1.06!10.41!PATZ1;;chr12:54366949..54366973,+!p3@HOXC11!1.06!10.41!HOXC11;;chr8:116681194..116681214,-!p1@TRPS1!1.05!96.21!TRPS1;;chr1:935398..935465,-!p2@HES4!1.05!21.17!HES4;;chrX:107019163..107019179,-!p7@TSC22D3!1.04!11.63!TSC22D3;;chr17:48045917..48045977,+!p1@DLX4!1.04!9.88!DLX4;;chr17:48072574..48072597,-!p1@DLX3!1.04!9.88!DLX3;;chr1:204042275..204042286,+!p4@SOX13!1.03!15.57!SOX13;;chr5:174151612..174151633,+!p2@MSX2!1.03!9.80!MSX2;;chr12:80084737..80084763,-!p3@PAWR!1.02!35.86!PAWR;;chr10:8100691..8100732,+!p5@GATA3!1.02!9.53!GATA3;;chr12:54380036..54380091,+!p4@HOXC10!1.02!9.53!HOXC10;;chr1:10856639..10856662,-!p2@CASZ1!1.02!9.53!CASZ1;;chr22:31739411..31739446,-!p5@PATZ1!1.02!9.45!PATZ1;;chr18:55102598..55102623,+!p1@ONECUT2!1.02!9.36!ONECUT2;;chr6:10412576..10412599,-!p5@TFAP2A!1.02!9.36!TFAP2A;;chr22:42229246..42229270,+!p2@SREBF2!1.01!117.90!SREBF2;;chr6:10413188..10413249,-!p7@TFAP2A!1.01!9.27!TFAP2A;;chr11:120110844..120110861,+!p3@POU2F3!1.01!9.27!POU2F3;;chr9:14314566..14314618,-!p1@NFIB!1.00!110.90!NFIB;;chr3:71632864..71632885,-!p4@FOXP1!1.00!31.57!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!1.00!15.22!MSX2;;chr16:54320617..54320643,-!p3@IRX3!1.00!11.54!IRX3;;chr2:45236579..45236596,-!p2@SIX2!1.00!9.10!SIX2;;chr11:65554528..65554546,+!p1@OVOL1!1.00!9.10!OVOL1;;chr16:30102849..30102865,-!p2@TBX6!1.00!9.01!TBX6;;chr5:137801160..137801176,+!p1@EGR1!0.99!897.43!EGR1;;chr1:61548069..61548102,+!p3@NFIA!0.99!21.52!NFIA;;chrX:66763815..66763854,+!p2@AR!0.99!11.72!AR;;chr12:52445218..52445237,+!p1@NR4A1!0.98!109.59!NR4A1;;chr3:24536253..24536328,-!p1@THRB!0.98!16.62!THRB;;chr14:38064572..38064584,-!p5@FOXA1!0.98!8.57!FOXA1;;chr12:54332687..54332701,+!p3@HOXC13!0.98!8.48!HOXC13;;chr14:38064536..38064550,-!p7@FOXA1!0.98!8.48!FOXA1;;chr8:116680833..116680881,-!p7@TRPS1!0.97!12.77!TRPS1;;chr16:54320158..54320200,-!p5@IRX3!0.97!11.98!IRX3;;chr17:7197911..7197964,-!p1@YBX2!0.97!8.40!YBX2;;chr11:65554563..65554576,+!p2@OVOL1!0.96!8.22!OVOL1;;chr20:18038521..18038571,-!p1@OVOL2!0.96!8.13!OVOL2;;chr1:201979703..201979721,+!p2@ELF3!0.96!8.05!ELF3;;chr14:75745523..75745537,+!p1@FOS!0.95!983.23!FOS;;chr12:54332652..54332671,+!p2@HOXC13!0.95!7.96!HOXC13;;chrX:66764343..66764362,+!p4@AR!0.95!7.87!AR;;chr2:239148671..239148686,-!p1@HES6!0.94!29.04!HES6;;chr1:8763440..8763460,-!p2@RERE!0.93!39.62!RERE;;chr17:46622440..46622477,-!p5@HOXB2!0.93!8.40!HOXB2;;chr8:102504690..102504704,+!p3@GRHL2!0.93!7.61!GRHL2;;chr10:8097321..8097348,+!p4@GATA3!0.93!7.52!GATA3;;chr13:72441074..72441172,-!p2@DACH1!0.93!7.43!DACH1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.92!817.05!ZFP36L2;;chr1:41827095..41827155,+!p1@FOXO6!0.92!10.15!FOXO6;;chr13:72441506..72441562,-!p3@DACH1!0.92!7.26!DACH1;;chrX:84498989..84499003,+!p1@ZNF711!0.91!9.97!ZNF711;;chr12:54332608..54332636,+!p1@HOXC13!0.91!7.17!HOXC13;;chr1:164528340..164528379,+!p4@PBX1!0.90!17.75!PBX1;;chr6:50786057..50786069,+!p9@TFAP2B!0.90!6.91!TFAP2B;;chrX:107018969..107019024,-!p6@TSC22D3!0.89!9.53!TSC22D3;;chr1:10856665..10856683,-!p4@CASZ1!0.89!6.73!CASZ1;;chr3:128206762..128206781,-!p2@GATA2!0.88!43.29!GATA2;;chr10:8097295..8097320,+!p6@GATA3!0.88!6.65!GATA3;;chr6:10415263..10415274,-!p8@TFAP2A!0.88!6.56!TFAP2A;;chr6:135502472..135502489,+!p3@MYB!0.88!6.56!MYB;;chr16:29819446..29819471,+!p9@MAZ!0.87!19.85!MAZ;;chr12:54378984..54378996,+!p7@HOXC10!0.87!6.38!HOXC10;;chr8:116681150..116681164,-!p5@TRPS1!0.86!12.51!TRPS1;;chr8:116681247..116681261,-!p8@TRPS1!0.86!8.13!TRPS1;;chr12:54367122..54367144,+!p4@HOXC11!0.86!6.30!HOXC11;;chr16:54319010..54319041,-!p8@IRX3!0.86!6.21!IRX3;;chr17:61920023..61920110,-!p1@SMARCD2!0.85!90.17!SMARCD2;;chr7:149470540..149470596,-!p2@ZNF467!0.85!8.22!ZNF467;;chr6:34524025..34524045,-!p3@SPDEF!0.85!6.03!SPDEF;;chr19:49140609..49140643,-!p1@DBP!0.84!35.33!DBP;;chr16:30102828..30102840,-!p5@TBX6!0.84!5.86!TBX6;;chrX:131623044..131623089,-!p1@MBNL3!0.83!25.54!MBNL3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.83!5.68!ZBED1;;chr8:116673894..116673913,-!p12@TRPS1!0.83!5.68!TRPS1;;chr12:54367012..54367025,+!p5@HOXC11!0.83!5.68!HOXC11;;chr1:10754477..10754517,-!p1@CASZ1!0.82!9.80!CASZ1;;chr10:22292591..22292606,-!p2@DNAJC1!0.82!9.53!DNAJC1;;chr14:38064307..38064323,-!p3@FOXA1!0.82!5.60!FOXA1;;chr22:29196511..29196541,-!p1@XBP1!0.81!655.51!XBP1;;chr1:204042723..204042784,+!p3@SOX13!0.81!9.53!SOX13;;chr12:48298765..48298783,-!p2@VDR!0.80!11.81!VDR;;chr15:56535922..56535936,-!p5@RFX7!0.80!7.35!RFX7;;chr22:31741725..31741744,-!p6@PATZ1!0.80!5.34!PATZ1;;chr12:54378864..54378884,+!p6@HOXC10!0.80!5.34!HOXC10;;chr1:227751231..227751273,+!p1@ZNF678!0.79!35.42!ZNF678;;chr19:19976683..19976709,+!p1@ZNF253!0.79!24.49!ZNF253;;chr6:50786631..50786635,+!p11@TFAP2B!0.79!5.16!TFAP2B;;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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0008425,UBERON:0010316 | |||
|fonse_cell_line=FF:0100816,FF:0101120 | |fonse_cell_line=FF:0100816,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100816,FF:0101120 | |fonse_cell_line_closure=FF:0100816,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10419-106C5 | |id=FF:10419-106C5 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101908 | |is_a=EFO:0002091;;FF:0000210;;FF:0101908 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10736 | |||
|library_id_phase_based=2:CNhs10736 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10419 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10419 | |||
|name=breast carcinoma cell line:MDA-MB-453 | |name=breast carcinoma cell line:MDA-MB-453 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10736,LSID691,release008,COMPLETED | |profile_hcage=CNhs10736,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=56.42525 | |rna_weight_ug=56.42525 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1192 | |sample_cell_catalog=RCB1192 | ||
|sample_cell_line=MDA-MB-453 | |sample_cell_line=MDA-MB-453 | ||
| Line 79: | Line 100: | ||
|top_motifs=ZEB1:2.28011194717;VSX1,2:2.01107721212;SNAI1..3:1.88524591428;MYOD1:1.82323102979;FOXQ1:1.66527553243;NFY{A,B,C}:1.62709208286;FOXA2:1.56444170504;RBPJ:1.43250354671;TOPORS:1.25961521968;PITX1..3:1.24842663179;LMO2:1.224758103;ARID5B:1.22031706561;FOXN1:1.18199801343;IKZF1:1.1777204515;TEF:1.17227039804;NKX2-3_NKX2-5:1.12979705192;NRF1:1.05496596196;PDX1:1.048657386;FOX{F1,F2,J1}:1.03397694696;POU2F1..3:1.01741560447;CRX:1.00720370089;ELK1,4_GABP{A,B1}:0.992598565314;ONECUT1,2:0.988704007716;ADNP_IRX_SIX_ZHX:0.939679654549;STAT1,3:0.939615811883;HOX{A4,D4}:0.930515466709;bHLH_family:0.923730578444;DBP:0.871090593961;PBX1:0.844880633634;RORA:0.768548655625;SP1:0.737499232985;LHX3,4:0.729955654458;NKX6-1,2:0.637497848816;ZNF143:0.634336161916;FOXP1:0.624261787264;RFX2..5_RFXANK_RFXAP:0.616388584844;ATF2:0.599862685988;SOX{8,9,10}:0.591305974585;TFDP1:0.567472313814;E2F1..5:0.512343527943;PAX6:0.510710344229;STAT5{A,B}:0.509297488732;BREu{core}:0.492147908093;ZFP161:0.443094414153;HIF1A:0.438699136566;ESR1:0.430040582091;MYB:0.407628681176;NFIL3:0.3874969076;OCT4_SOX2{dimer}:0.379289029575;SOX5:0.365683796616;MED-1{core}:0.342193661129;HOX{A5,B5}:0.338252533231;FOXO1,3,4:0.332326649455;NANOG:0.322940710289;YY1:0.287076145953;PAX5:0.259640844094;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.245701913768;GFI1:0.245662521155;PPARG:0.214251838037;ATF6:0.200928152514;PAX8:0.196002848326;TEAD1:0.191351551406;GFI1B:0.174593924613;CDC5L:0.172342806101;EVI1:0.168561841673;FOX{I1,J2}:0.166937923694;TFAP2{A,C}:0.14902499413;AHR_ARNT_ARNT2:0.148347969019;NKX2-1,4:0.129526671513;RFX1:0.10973241821;NR1H4:0.093655652631;NFIX:0.0753380929426;AR:0.0671195149121;HOX{A6,A7,B6,B7}:0.0455346939474;NKX3-2:0.0224283504795;EBF1:0.0156554423561;ZNF148:0.0139413236677;ELF1,2,4:0.00823614441322;IKZF2:0.00249232639879;HNF1A:0.00103261433665;TBX4,5:-0.00201009887516;PAX2:-0.00621210463525;GATA6:-0.00989681053349;TFAP2B:-0.0110227983021;POU5F1:-0.0119769358486;POU1F1:-0.0123887856724;HIC1:-0.0183236648701;LEF1_TCF7_TCF7L1,2:-0.0184658213246;GTF2A1,2:-0.0187483870245;TLX1..3_NFIC{dimer}:-0.0285854106213;ATF4:-0.0333953117394;TBP:-0.038579177632;CUX2:-0.0393637820048;SOX17:-0.0608026954802;ATF5_CREB3:-0.071070587928;FOX{D1,D2}:-0.0748142122254;FOSL2:-0.0873662460824;HNF4A_NR2F1,2:-0.0889870508734;NKX3-1:-0.0904701057517;ZBTB6:-0.11549283717;HAND1,2:-0.11577058907;PAX3,7:-0.120408612832;EP300:-0.134715088365;RXRA_VDR{dimer}:-0.140111808947;FOXM1:-0.140950364601;TP53:-0.144639998968;PRRX1,2:-0.152627667119;MAFB:-0.166357088169;FOXP3:-0.184670722505;HOXA9_MEIS1:-0.191440720065;CDX1,2,4:-0.195147328715;EGR1..3:-0.201990989425;GTF2I:-0.216189106524;MEF2{A,B,C,D}:-0.216520257972;FOS_FOS{B,L1}_JUN{B,D}:-0.221282160922;FOXL1:-0.222663190094;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.233083724835;ESRRA:-0.238259484695;ZIC1..3:-0.244492573509;ALX1:-0.26523429818;HLF:-0.280481265297;ZBTB16:-0.281451400999;XBP1:-0.284914873931;SOX2:-0.289171284065;TAL1_TCF{3,4,12}:-0.306768484546;MTE{core}:-0.322171669979;EN1,2:-0.324151128885;HSF1,2:-0.328403098446;NR5A1,2:-0.329727688879;NFE2L2:-0.341288933266;ZNF423:-0.349485669123;PATZ1:-0.353545906771;NR6A1:-0.362759793435;BACH2:-0.375448588349;TGIF1:-0.400044162389;NANOG{mouse}:-0.406496422916;BPTF:-0.429298135823;DMAP1_NCOR{1,2}_SMARC:-0.433613662254;MTF1:-0.457292811593;JUN:-0.478582880593;SPIB:-0.489102062876;RUNX1..3:-0.49060257009;PAX4:-0.508556328233;NFE2:-0.520250655941;NFKB1_REL_RELA:-0.521074098741;XCPE1{core}:-0.53859280269;MAZ:-0.541535753943;KLF4:-0.543617013585;TLX2:-0.552706439881;HMGA1,2:-0.558640439873;SREBF1,2:-0.590505427143;REST:-0.603658137274;SPI1:-0.613078041451;T:-0.628501953459;CEBPA,B_DDIT3:-0.667221175612;SRF:-0.716445010994;HBP1_HMGB_SSRP1_UBTF:-0.721169033891;ETS1,2:-0.728893149865;RREB1:-0.729958034672;GZF1:-0.737194114191;NHLH1,2:-0.752902662054;TFCP2:-0.756900808627;IRF7:-0.759610279976;ZNF384:-0.782935819642;MYBL2:-0.786303721755;IRF1,2:-0.807655113532;FOXD3:-0.813750753976;UFEwm:-0.836352297951;MYFfamily:-0.840729403708;ALX4:-0.848135663711;HMX1:-0.851906334566;POU3F1..4:-0.89050198281;TFAP4:-0.901846859867;GCM1,2:-0.909361934898;PAX1,9:-0.91482209921;MZF1:-0.923748620471;ZNF238:-0.926609275465;CREB1:-0.956948864159;NR3C1:-1.01894912717;POU6F1:-1.02163415222;GATA4:-1.07851381793;NFATC1..3:-1.18553803971;SPZ1:-1.26270802414;PRDM1:-1.29924626465;AIRE:-1.34774021365;STAT2,4,6:-1.35647724762;NKX2-2,8:-1.4288937926;NFE2L1:-1.51959816569;SMAD1..7,9:-1.54047406471;HES1:-1.92452317903;RXR{A,B,G}:-2.03835033977;GLI1..3:-2.42184901851 | |top_motifs=ZEB1:2.28011194717;VSX1,2:2.01107721212;SNAI1..3:1.88524591428;MYOD1:1.82323102979;FOXQ1:1.66527553243;NFY{A,B,C}:1.62709208286;FOXA2:1.56444170504;RBPJ:1.43250354671;TOPORS:1.25961521968;PITX1..3:1.24842663179;LMO2:1.224758103;ARID5B:1.22031706561;FOXN1:1.18199801343;IKZF1:1.1777204515;TEF:1.17227039804;NKX2-3_NKX2-5:1.12979705192;NRF1:1.05496596196;PDX1:1.048657386;FOX{F1,F2,J1}:1.03397694696;POU2F1..3:1.01741560447;CRX:1.00720370089;ELK1,4_GABP{A,B1}:0.992598565314;ONECUT1,2:0.988704007716;ADNP_IRX_SIX_ZHX:0.939679654549;STAT1,3:0.939615811883;HOX{A4,D4}:0.930515466709;bHLH_family:0.923730578444;DBP:0.871090593961;PBX1:0.844880633634;RORA:0.768548655625;SP1:0.737499232985;LHX3,4:0.729955654458;NKX6-1,2:0.637497848816;ZNF143:0.634336161916;FOXP1:0.624261787264;RFX2..5_RFXANK_RFXAP:0.616388584844;ATF2:0.599862685988;SOX{8,9,10}:0.591305974585;TFDP1:0.567472313814;E2F1..5:0.512343527943;PAX6:0.510710344229;STAT5{A,B}:0.509297488732;BREu{core}:0.492147908093;ZFP161:0.443094414153;HIF1A:0.438699136566;ESR1:0.430040582091;MYB:0.407628681176;NFIL3:0.3874969076;OCT4_SOX2{dimer}:0.379289029575;SOX5:0.365683796616;MED-1{core}:0.342193661129;HOX{A5,B5}:0.338252533231;FOXO1,3,4:0.332326649455;NANOG:0.322940710289;YY1:0.287076145953;PAX5:0.259640844094;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.245701913768;GFI1:0.245662521155;PPARG:0.214251838037;ATF6:0.200928152514;PAX8:0.196002848326;TEAD1:0.191351551406;GFI1B:0.174593924613;CDC5L:0.172342806101;EVI1:0.168561841673;FOX{I1,J2}:0.166937923694;TFAP2{A,C}:0.14902499413;AHR_ARNT_ARNT2:0.148347969019;NKX2-1,4:0.129526671513;RFX1:0.10973241821;NR1H4:0.093655652631;NFIX:0.0753380929426;AR:0.0671195149121;HOX{A6,A7,B6,B7}:0.0455346939474;NKX3-2:0.0224283504795;EBF1:0.0156554423561;ZNF148:0.0139413236677;ELF1,2,4:0.00823614441322;IKZF2:0.00249232639879;HNF1A:0.00103261433665;TBX4,5:-0.00201009887516;PAX2:-0.00621210463525;GATA6:-0.00989681053349;TFAP2B:-0.0110227983021;POU5F1:-0.0119769358486;POU1F1:-0.0123887856724;HIC1:-0.0183236648701;LEF1_TCF7_TCF7L1,2:-0.0184658213246;GTF2A1,2:-0.0187483870245;TLX1..3_NFIC{dimer}:-0.0285854106213;ATF4:-0.0333953117394;TBP:-0.038579177632;CUX2:-0.0393637820048;SOX17:-0.0608026954802;ATF5_CREB3:-0.071070587928;FOX{D1,D2}:-0.0748142122254;FOSL2:-0.0873662460824;HNF4A_NR2F1,2:-0.0889870508734;NKX3-1:-0.0904701057517;ZBTB6:-0.11549283717;HAND1,2:-0.11577058907;PAX3,7:-0.120408612832;EP300:-0.134715088365;RXRA_VDR{dimer}:-0.140111808947;FOXM1:-0.140950364601;TP53:-0.144639998968;PRRX1,2:-0.152627667119;MAFB:-0.166357088169;FOXP3:-0.184670722505;HOXA9_MEIS1:-0.191440720065;CDX1,2,4:-0.195147328715;EGR1..3:-0.201990989425;GTF2I:-0.216189106524;MEF2{A,B,C,D}:-0.216520257972;FOS_FOS{B,L1}_JUN{B,D}:-0.221282160922;FOXL1:-0.222663190094;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.233083724835;ESRRA:-0.238259484695;ZIC1..3:-0.244492573509;ALX1:-0.26523429818;HLF:-0.280481265297;ZBTB16:-0.281451400999;XBP1:-0.284914873931;SOX2:-0.289171284065;TAL1_TCF{3,4,12}:-0.306768484546;MTE{core}:-0.322171669979;EN1,2:-0.324151128885;HSF1,2:-0.328403098446;NR5A1,2:-0.329727688879;NFE2L2:-0.341288933266;ZNF423:-0.349485669123;PATZ1:-0.353545906771;NR6A1:-0.362759793435;BACH2:-0.375448588349;TGIF1:-0.400044162389;NANOG{mouse}:-0.406496422916;BPTF:-0.429298135823;DMAP1_NCOR{1,2}_SMARC:-0.433613662254;MTF1:-0.457292811593;JUN:-0.478582880593;SPIB:-0.489102062876;RUNX1..3:-0.49060257009;PAX4:-0.508556328233;NFE2:-0.520250655941;NFKB1_REL_RELA:-0.521074098741;XCPE1{core}:-0.53859280269;MAZ:-0.541535753943;KLF4:-0.543617013585;TLX2:-0.552706439881;HMGA1,2:-0.558640439873;SREBF1,2:-0.590505427143;REST:-0.603658137274;SPI1:-0.613078041451;T:-0.628501953459;CEBPA,B_DDIT3:-0.667221175612;SRF:-0.716445010994;HBP1_HMGB_SSRP1_UBTF:-0.721169033891;ETS1,2:-0.728893149865;RREB1:-0.729958034672;GZF1:-0.737194114191;NHLH1,2:-0.752902662054;TFCP2:-0.756900808627;IRF7:-0.759610279976;ZNF384:-0.782935819642;MYBL2:-0.786303721755;IRF1,2:-0.807655113532;FOXD3:-0.813750753976;UFEwm:-0.836352297951;MYFfamily:-0.840729403708;ALX4:-0.848135663711;HMX1:-0.851906334566;POU3F1..4:-0.89050198281;TFAP4:-0.901846859867;GCM1,2:-0.909361934898;PAX1,9:-0.91482209921;MZF1:-0.923748620471;ZNF238:-0.926609275465;CREB1:-0.956948864159;NR3C1:-1.01894912717;POU6F1:-1.02163415222;GATA4:-1.07851381793;NFATC1..3:-1.18553803971;SPZ1:-1.26270802414;PRDM1:-1.29924626465;AIRE:-1.34774021365;STAT2,4,6:-1.35647724762;NKX2-2,8:-1.4288937926;NFE2L1:-1.51959816569;SMAD1..7,9:-1.54047406471;HES1:-1.92452317903;RXR{A,B,G}:-2.03835033977;GLI1..3:-2.42184901851 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10419-106C5;search_select_hide=table117:FF:10419-106C5 | |||
}} | }} | ||
Latest revision as of 14:00, 3 June 2020
| Name: | breast carcinoma cell line:MDA-MB-453 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10736 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10736
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10736
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.77 |
| 10 | 10 | 0.471 |
| 100 | 100 | 0.679 |
| 101 | 101 | 0.392 |
| 102 | 102 | 0.919 |
| 103 | 103 | 0.072 |
| 104 | 104 | 0.472 |
| 105 | 105 | 0.949 |
| 106 | 106 | 0.00551 |
| 107 | 107 | 0.0446 |
| 108 | 108 | 0.975 |
| 109 | 109 | 0.739 |
| 11 | 11 | 0.374 |
| 110 | 110 | 0.65 |
| 111 | 111 | 0.528 |
| 112 | 112 | 0.146 |
| 113 | 113 | 0.0462 |
| 114 | 114 | 0.231 |
| 115 | 115 | 0.205 |
| 116 | 116 | 0.23 |
| 117 | 117 | 0.246 |
| 118 | 118 | 0.28 |
| 119 | 119 | 0.959 |
| 12 | 12 | 0.721 |
| 120 | 120 | 0.653 |
| 121 | 121 | 0.213 |
| 122 | 122 | 0.0881 |
| 123 | 123 | 0.277 |
| 124 | 124 | 0.097 |
| 125 | 125 | 0.243 |
| 126 | 126 | 0.969 |
| 127 | 127 | 0.775 |
| 128 | 128 | 0.0255 |
| 129 | 129 | 0.887 |
| 13 | 13 | 0.113 |
| 130 | 130 | 0.357 |
| 131 | 131 | 0.164 |
| 132 | 132 | 0.221 |
| 133 | 133 | 0.277 |
| 134 | 134 | 0.818 |
| 135 | 135 | 0.147 |
| 136 | 136 | 0.0977 |
| 137 | 137 | 0.317 |
| 138 | 138 | 0.225 |
| 139 | 139 | 0.88 |
| 14 | 14 | 0.757 |
| 140 | 140 | 0.144 |
| 141 | 141 | 0.911 |
| 142 | 142 | 0.817 |
| 143 | 143 | 0.168 |
| 144 | 144 | 0.0441 |
| 145 | 145 | 0.189 |
| 146 | 146 | 0.725 |
| 147 | 147 | 0.334 |
| 148 | 148 | 0.223 |
| 149 | 149 | 0.114 |
| 15 | 15 | 0.704 |
| 150 | 150 | 0.948 |
| 151 | 151 | 0.287 |
| 152 | 152 | 0.0454 |
| 153 | 153 | 0.705 |
| 154 | 154 | 0.882 |
| 155 | 155 | 0.135 |
| 156 | 156 | 0.17 |
| 157 | 157 | 0.821 |
| 158 | 158 | 0.971 |
| 159 | 159 | 0.903 |
| 16 | 16 | 0.189 |
| 160 | 160 | 0.23 |
| 161 | 161 | 0.824 |
| 162 | 162 | 0.761 |
| 163 | 163 | 0.311 |
| 164 | 164 | 0.875 |
| 165 | 165 | 0.649 |
| 166 | 166 | 0.0119 |
| 167 | 167 | 0.944 |
| 168 | 168 | 0.00152 |
| 169 | 169 | 0.675 |
| 17 | 17 | 0.999 |
| 18 | 18 | 0.0347 |
| 19 | 19 | 0.211 |
| 2 | 2 | 0.253 |
| 20 | 20 | 0.259 |
| 21 | 21 | 0.415 |
| 22 | 22 | 0.515 |
| 23 | 23 | 0.0523 |
| 24 | 24 | 0.571 |
| 25 | 25 | 0.608 |
| 26 | 26 | 0.811 |
| 27 | 27 | 0.78 |
| 28 | 28 | 0.603 |
| 29 | 29 | 0.261 |
| 3 | 3 | 0.244 |
| 30 | 30 | 0.547 |
| 31 | 31 | 0.337 |
| 32 | 32 | 0.0588 |
| 33 | 33 | 0.93 |
| 34 | 34 | 0.134 |
| 35 | 35 | 0.254 |
| 36 | 36 | 0.529 |
| 37 | 37 | 0.0785 |
| 38 | 38 | 0.573 |
| 39 | 39 | 0.746 |
| 4 | 4 | 0.582 |
| 40 | 40 | 0.634 |
| 41 | 41 | 0.0741 |
| 42 | 42 | 0.761 |
| 43 | 43 | 0.0918 |
| 44 | 44 | 0.183 |
| 45 | 45 | 0.966 |
| 46 | 46 | 0.244 |
| 47 | 47 | 0.904 |
| 48 | 48 | 0.892 |
| 49 | 49 | 0.536 |
| 5 | 5 | 0.373 |
| 50 | 50 | 0.889 |
| 51 | 51 | 0.685 |
| 52 | 52 | 0.222 |
| 53 | 53 | 0.725 |
| 54 | 54 | 0.672 |
| 55 | 55 | 0.473 |
| 56 | 56 | 0.494 |
| 57 | 57 | 0.858 |
| 58 | 58 | 0.435 |
| 59 | 59 | 0.0158 |
| 6 | 6 | 0.313 |
| 60 | 60 | 0.077 |
| 61 | 61 | 0.614 |
| 62 | 62 | 0.115 |
| 63 | 63 | 0.937 |
| 64 | 64 | 0.99 |
| 65 | 65 | 0.258 |
| 66 | 66 | 0.00362 |
| 67 | 67 | 0.224 |
| 68 | 68 | 0.0612 |
| 69 | 69 | 0.515 |
| 7 | 7 | 0.874 |
| 70 | 70 | 0.255 |
| 71 | 71 | 0.449 |
| 72 | 72 | 0.341 |
| 73 | 73 | 0.224 |
| 74 | 74 | 0.18 |
| 75 | 75 | 0.203 |
| 76 | 76 | 0.893 |
| 77 | 77 | 0.237 |
| 78 | 78 | 0.57 |
| 79 | 79 | 0.0132 |
| 8 | 8 | 0.122 |
| 80 | 80 | 0.193 |
| 81 | 81 | 0.101 |
| 82 | 82 | 0.0547 |
| 83 | 83 | 0.469 |
| 84 | 84 | 0.912 |
| 85 | 85 | 0.0517 |
| 86 | 86 | 0.658 |
| 87 | 87 | 0.168 |
| 88 | 88 | 0.614 |
| 89 | 89 | 0.268 |
| 9 | 9 | 0.106 |
| 90 | 90 | 0.162 |
| 91 | 91 | 0.179 |
| 92 | 92 | 0.0797 |
| 93 | 93 | 0.411 |
| 94 | 94 | 0.318 |
| 95 | 95 | 0.315 |
| 96 | 96 | 0.0784 |
| 97 | 97 | 0.622 |
| 98 | 98 | 0.253 |
| 99 | 99 | 0.692 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10736
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101908 MDA-MB-453 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
1612 (breast cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001443 (chest)
0003100 (female organism)
0000915 (thoracic segment of trunk)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0104086 (mammary gland tumor cell line sample)
0100356 (breast cancer cell line sample)
0103568 (mammary gland cell line sample)
0101908 (MDA-MB-453 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0008425 (mammary ridge)
UBERON:0010316 (germ layer / neural crest)
