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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007876
|DRA_sample_Accession=CAGE@SAMD00005399
|accession_numbers=CAGE;DRX007982;DRR008854;DRZ000279;DRZ001664
|accession_numbers=CAGE;DRX007982;DRR008854;DRZ000279;DRZ001664;DRZ011629;DRZ013014
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002108,UBERON:0000160,UBERON:0002394,UBERON:0004913,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003703,UBERON:0003928,UBERON:0010317,UBERON:0001555,UBERON:0002114,UBERON:0005409,UBERON:0002294,UBERON:0001173,UBERON:0002423,UBERON:0001174,UBERON:0004914
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002108,UBERON:0000160,UBERON:0002394,UBERON:0004913,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003703,UBERON:0003928,UBERON:0010317,UBERON:0001555,UBERON:0002114,UBERON:0005409,UBERON:0002294,UBERON:0001173,UBERON:0002423,UBERON:0001174,UBERON:0004914
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.65!448.74!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.52!530.36!FOXQ1;;chr1:201979743..201979762,+!p1@ELF3!2.06!114.14!ELF3;;chr3:111314186..111314204,-!p1@ZBED2!2.05!110.60!ZBED2;;chr17:46682321..46682362,-!p1@HOXB6!1.87!73.34!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.80!62.10!ELF5;;chr11:61520075..61520136,+!p1@C11orf9!1.79!125.53!C11orf9;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr11:34535297..34535317,-!p1@ELF5!1.69!48.20!ELF5;;chr12:66218598..66218645,+!p2@HMGA2!1.60!172.55!HMGA2;;chr17:38020392..38020477,-!p1@IKZF3!1.59!37.70!IKZF3;;chr1:201979703..201979721,+!p2@ELF3!1.59!37.56!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.50!30.31!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.56!IRF6;;chr14:38064429..38064486,-!p1@FOXA1!1.49!30.16!FOXA1;;chr11:34642656..34642667,+!p2@EHF!1.48!29.28!EHF;;chr19:45971246..45971265,+!p1@FOSB!1.47!509.07!FOSB;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.24!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.46!27.94!EHF;;chr12:66218003..66218018,+!p9@HMGA2!1.45!32.97!HMGA2;;chr21:36421535..36421610,-!p2@RUNX1!1.42!88.57!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.42!30.46!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.42!28.98!PPARG;;chr17:70117153..70117174,+!p1@SOX9!1.39!231.99!SOX9;;chr11:65554528..65554546,+!p1@OVOL1!1.37!22.33!OVOL1;;chr20:56195474..56195506,-!p1@ZBP1!1.35!21.44!ZBP1;;chr13:73633131..73633149,+!p1@KLF5!1.34!214.39!KLF5;;chr12:66218183..66218209,+!p4@HMGA2!1.34!39.48!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.01!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.31!19.52!SOX7;;chr3:111314230..111314241,-!p2@ZBED2!1.31!19.22!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.30!164.86!PPP1R13L;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.00!ZBED1;;chr17:46655704..46655718,-!p2@HOXB4!1.25!25.14!HOXB4;;chr17:46622440..46622477,-!p5@HOXB2!1.25!18.93!HOXB2;;chr7:99680193..99680204,-!p2@ZNF3!1.23!15.97!ZNF3;;chr15:67418119..67418162,+!p5@SMAD3!1.22!17.15!SMAD3;;chr7:27153454..27153469,-!p2@HOXA3!1.22!15.52!HOXA3;;chr6:1312155..1312187,+!p2@FOXQ1!1.21!15.23!FOXQ1;;chr6:126240380..126240430,+!p2@NCOA7!1.20!37.85!NCOA7;;chr6:34524093..34524135,-!p1@SPDEF!1.18!14.19!SPDEF;;chr2:157189180..157189290,-!p1@NR4A2!1.17!71.71!NR4A2;;chr19:12551785..12551823,-!p1@ZNF443!1.17!22.03!ZNF443;;chr12:66218836..66218888,+!p1@HMGA2!1.16!125.97!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.14!17.59!HOXB7;;chr7:99156249..99156311,+!p1@ZNF655!1.13!281.22!ZNF655;;chr3:114343768..114343822,-!p1@ZBTB20!1.13!55.00!ZBTB20;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.63!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!1.13!12.42!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!1.12!15.52!SMAD3;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.12!HOXB6;;chr6:34204672..34204692,+!p1@HMGA1!1.10!1299.65!HMGA1;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.97!EGR3;;chr3:114343826..114343869,-!p4@ZBTB20!1.10!23.07!ZBTB20;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.91!FOSL1;;chr12:96588219..96588263,+!p2@ELK3!1.08!80.29!ELK3;;chr7:99613212..99613236,+!p1@ZKSCAN1!1.07!372.15!ZKSCAN1;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.67!HOXB7;;chr17:46703687..46703740,-!p1@HOXB9!1.07!10.65!HOXB9;;chr12:52445218..52445237,+!p1@NR4A1!1.04!128.49!NR4A1;;chr15:67357924..67357952,+!p2@SMAD3!1.04!67.72!SMAD3;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.04!29.72!ZKSCAN1;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!27.06!ARNTL2;;chr17:74137321..74137337,-!p1@FOXJ1!1.04!9.91!FOXJ1;;chr7:100076765..100076861,-!p1@TSC22D4!1.03!335.04!TSC22D4;;chr6:106534192..106534224,+!p1@PRDM1!1.03!27.50!PRDM1;;chr7:99679324..99679368,-!p1@ZNF3!1.02!134.25!ZNF3;;chr19:12476443..12476467,-!p1@ZNF442!1.02!15.82!ZNF442;;chr2:61108808..61108821,+!p3@REL!1.02!12.12!REL;;chr11:65554563..65554576,+!p2@OVOL1!1.02!9.46!OVOL1;;chr12:66218378..66218401,+!p6@HMGA2!1.01!14.34!HMGA2;;chr14:75988771..75988826,+!p1@BATF!1.01!12.27!BATF;;chr3:170076314..170076334,+!p2@SKIL!1.01!12.12!SKIL;;chr6:126240442..126240459,+!p4@NCOA7!1.00!11.53!NCOA7;;chr2:172967621..172967637,-!p1@DLX2!0.99!23.80!DLX2;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.52!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.99!14.49!MECOM;;chr6:34524025..34524045,-!p3@SPDEF!0.99!8.87!SPDEF;;chr3:141087339..141087387,+!p2@ZBTB38!0.98!89.45!ZBTB38;;chr9:4300050..4300118,-!p1@GLIS3!0.96!55.15!GLIS3;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.49!ETV4;;chr6:15246200..15246214,+!p2@JARID2!0.96!23.07!JARID2;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.13!EGR4;;chr7:99613237..99613248,+!p3@ZKSCAN1!0.95!17.15!ZKSCAN1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.27!ETV4;;chr6:34524049..34524089,-!p2@SPDEF!0.95!7.84!SPDEF;;chr1:2985760..2985774,+!p1@PRDM16!0.95!7.84!PRDM16;;chr6:21597765..21597779,+!p2@SOX4!0.94!64.76!SOX4;;chr6:106534230..106534254,+!p2@PRDM1!0.94!19.81!PRDM1;;chr17:38256822..38256851,-!p1@NR1D1!0.93!61.36!NR1D1;;chr7:64838786..64838809,+!p2@ZNF92!0.93!44.36!ZNF92;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!31.20!ZBTB38;;chr12: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|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.65!448.74!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.52!530.36!FOXQ1;;chr1:201979743..201979762,+!p1@ELF3!2.06!114.14!ELF3;;chr3:111314186..111314204,-!p1@ZBED2!2.05!110.60!ZBED2;;chr17:46682321..46682362,-!p1@HOXB6!1.87!73.34!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.80!62.10!ELF5;;chr11:61520075..61520136,+!p1@C11orf9!1.79!125.53!C11orf9;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr11:34535297..34535317,-!p1@ELF5!1.69!48.20!ELF5;;chr12:66218598..66218645,+!p2@HMGA2!1.60!172.55!HMGA2;;chr17:38020392..38020477,-!p1@IKZF3!1.59!37.70!IKZF3;;chr1:201979703..201979721,+!p2@ELF3!1.59!37.56!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.50!30.31!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.56!IRF6;;chr14:38064429..38064486,-!p1@FOXA1!1.49!30.16!FOXA1;;chr11:34642656..34642667,+!p2@EHF!1.48!29.28!EHF;;chr19:45971246..45971265,+!p1@FOSB!1.47!509.07!FOSB;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.24!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.46!27.94!EHF;;chr12:66218003..66218018,+!p9@HMGA2!1.45!32.97!HMGA2;;chr21:36421535..36421610,-!p2@RUNX1!1.42!88.57!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.42!30.46!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.42!28.98!PPARG;;chr17:70117153..70117174,+!p1@SOX9!1.39!231.99!SOX9;;chr11:65554528..65554546,+!p1@OVOL1!1.37!22.33!OVOL1;;chr20:56195474..56195506,-!p1@ZBP1!1.35!21.44!ZBP1;;chr13:73633131..73633149,+!p1@KLF5!1.34!214.39!KLF5;;chr12:66218183..66218209,+!p4@HMGA2!1.34!39.48!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.01!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.31!19.52!SOX7;;chr3:111314230..111314241,-!p2@ZBED2!1.31!19.22!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.30!164.86!PPP1R13L;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.00!ZBED1;;chr17:46655704..46655718,-!p2@HOXB4!1.25!25.14!HOXB4;;chr17:46622440..46622477,-!p5@HOXB2!1.25!18.93!HOXB2;;chr7:99680193..99680204,-!p2@ZNF3!1.23!15.97!ZNF3;;chr15:67418119..67418162,+!p5@SMAD3!1.22!17.15!SMAD3;;chr7:27153454..27153469,-!p2@HOXA3!1.22!15.52!HOXA3;;chr6:1312155..1312187,+!p2@FOXQ1!1.21!15.23!FOXQ1;;chr6:126240380..126240430,+!p2@NCOA7!1.20!37.85!NCOA7;;chr6:34524093..34524135,-!p1@SPDEF!1.18!14.19!SPDEF;;chr2:157189180..157189290,-!p1@NR4A2!1.17!71.71!NR4A2;;chr19:12551785..12551823,-!p1@ZNF443!1.17!22.03!ZNF443;;chr12:66218836..66218888,+!p1@HMGA2!1.16!125.97!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.14!17.59!HOXB7;;chr7:99156249..99156311,+!p1@ZNF655!1.13!281.22!ZNF655;;chr3:114343768..114343822,-!p1@ZBTB20!1.13!55.00!ZBTB20;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.63!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!1.13!12.42!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!1.12!15.52!SMAD3;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.12!HOXB6;;chr6:34204672..34204692,+!p1@HMGA1!1.10!1299.65!HMGA1;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.97!EGR3;;chr3:114343826..114343869,-!p4@ZBTB20!1.10!23.07!ZBTB20;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.91!FOSL1;;chr12:96588219..96588263,+!p2@ELK3!1.08!80.29!ELK3;;chr7:99613212..99613236,+!p1@ZKSCAN1!1.07!372.15!ZKSCAN1;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.67!HOXB7;;chr17:46703687..46703740,-!p1@HOXB9!1.07!10.65!HOXB9;;chr12:52445218..52445237,+!p1@NR4A1!1.04!128.49!NR4A1;;chr15:67357924..67357952,+!p2@SMAD3!1.04!67.72!SMAD3;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.04!29.72!ZKSCAN1;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!27.06!ARNTL2;;chr17:74137321..74137337,-!p1@FOXJ1!1.04!9.91!FOXJ1;;chr7:100076765..100076861,-!p1@TSC22D4!1.03!335.04!TSC22D4;;chr6:106534192..106534224,+!p1@PRDM1!1.03!27.50!PRDM1;;chr7:99679324..99679368,-!p1@ZNF3!1.02!134.25!ZNF3;;chr19:12476443..12476467,-!p1@ZNF442!1.02!15.82!ZNF442;;chr2:61108808..61108821,+!p3@REL!1.02!12.12!REL;;chr11:65554563..65554576,+!p2@OVOL1!1.02!9.46!OVOL1;;chr12:66218378..66218401,+!p6@HMGA2!1.01!14.34!HMGA2;;chr14:75988771..75988826,+!p1@BATF!1.01!12.27!BATF;;chr3:170076314..170076334,+!p2@SKIL!1.01!12.12!SKIL;;chr6:126240442..126240459,+!p4@NCOA7!1.00!11.53!NCOA7;;chr2:172967621..172967637,-!p1@DLX2!0.99!23.80!DLX2;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.52!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.99!14.49!MECOM;;chr6:34524025..34524045,-!p3@SPDEF!0.99!8.87!SPDEF;;chr3:141087339..141087387,+!p2@ZBTB38!0.98!89.45!ZBTB38;;chr9:4300050..4300118,-!p1@GLIS3!0.96!55.15!GLIS3;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.49!ETV4;;chr6:15246200..15246214,+!p2@JARID2!0.96!23.07!JARID2;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.13!EGR4;;chr7:99613237..99613248,+!p3@ZKSCAN1!0.95!17.15!ZKSCAN1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.27!ETV4;;chr6:34524049..34524089,-!p2@SPDEF!0.95!7.84!SPDEF;;chr1:2985760..2985774,+!p1@PRDM16!0.95!7.84!PRDM16;;chr6:21597765..21597779,+!p2@SOX4!0.94!64.76!SOX4;;chr6:106534230..106534254,+!p2@PRDM1!0.94!19.81!PRDM1;;chr17:38256822..38256851,-!p1@NR1D1!0.93!61.36!NR1D1;;chr7:64838786..64838809,+!p2@ZNF92!0.93!44.36!ZNF92;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!31.20!ZBTB38;;chr12: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Line 40: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg38.nobarcode.ctss.bed.gz
|id=FF:10417-106C3
|id=FF:10417-106C3
|is_a=DOID:3119;;DOID:4929;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0004913
|is_a=DOID:3119;;DOID:4929;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0004913
|is_obsolete=
|is_obsolete=
|library_id=CNhs10734
|library_id=CNhs10734
|library_id_phase_based=2:CNhs10734
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10417
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10417
|name=papillotubular adenocarcinoma cell line:TGBC18TKB
|name=papillotubular adenocarcinoma cell line:TGBC18TKB
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10734,LSID691,release008,COMPLETED
|profile_hcage=CNhs10734,LSID691,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 88: Line 100:
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|top_motifs=ZEB1:2.26168819449;SNAI1..3:2.1952217586;TBX4,5:1.71711635278;XCPE1{core}:1.56906695764;MYOD1:1.38445816239;bHLH_family:1.36299975277;HSF1,2:1.3397460595;NKX2-3_NKX2-5:1.24965211417;TEAD1:1.21220295422;ADNP_IRX_SIX_ZHX:1.11773218672;PITX1..3:1.07132645351;SP1:1.05940524979;LEF1_TCF7_TCF7L1,2:1.03196169385;ZNF148:1.02852142088;SOX2:1.01247230703;NR1H4:0.985211819982;FOXN1:0.984443896586;NKX2-1,4:0.91655802395;E2F1..5:0.816287976809;POU2F1..3:0.814404272429;PPARG:0.813868812189;FOXQ1:0.793879682578;FOX{D1,D2}:0.791274499756;TLX2:0.782786576072;LMO2:0.777280058421;VSX1,2:0.770949749294;ELK1,4_GABP{A,B1}:0.653191319019;POU1F1:0.649725382837;FOXO1,3,4:0.580663437599;FOS_FOS{B,L1}_JUN{B,D}:0.563287308401;GLI1..3:0.53810222938;TFDP1:0.533909708795;BACH2:0.531052442893;RXRA_VDR{dimer}:0.530490640726;TFCP2:0.50502905435;ZNF423:0.492676258299;FOX{I1,J2}:0.485088590582;TFAP2{A,C}:0.48417743688;FOXP1:0.484109758283;NANOG:0.477004623336;FOXM1:0.476553270113;MAZ:0.47369714411;IRF7:0.444596882776;RREB1:0.439843602772;FOXD3:0.437141564931;EGR1..3:0.434623646524;PAX8:0.375807180688;HNF4A_NR2F1,2:0.368128857654;ONECUT1,2:0.336370570145;PDX1:0.308221362976;NFE2:0.291991379263;ZFP161:0.288245734194;PBX1:0.276652784718;FOX{F1,F2,J1}:0.273700905507;MYB:0.271718456994;NFKB1_REL_RELA:0.268506537572;FOSL2:0.267594825939;MED-1{core}:0.248484016509;JUN:0.244913086944;HNF1A:0.243045540631;NFY{A,B,C}:0.215244483848;TEF:0.208094037072;HBP1_HMGB_SSRP1_UBTF:0.19678650108;RFX2..5_RFXANK_RFXAP:0.185320804973;ATF4:0.183858821719;TP53:0.182299521625;MTF1:0.179825145953;TLX1..3_NFIC{dimer}:0.177084601484;BPTF:0.140365117666;RFX1:0.136788940628;ELF1,2,4:0.130213613844;CDC5L:0.127255030593;ATF5_CREB3:0.118385609205;TOPORS:0.11306989016;HOX{A6,A7,B6,B7}:0.107806795318;IRF1,2:0.0984841914913;SOX17:0.0764365041309;PAX5:0.0312898675791;FOXA2:0.00365287638767;SOX{8,9,10}:-0.0055784225567;OCT4_SOX2{dimer}:-0.00779319979674;TBP:-0.0237046081115;NR6A1:-0.0413137994595;AHR_ARNT_ARNT2:-0.0508799425037;ARID5B:-0.0696740594332;STAT2,4,6:-0.0708542188165;STAT5{A,B}:-0.0713761136714;ESRRA:-0.0715435662916;NKX6-1,2:-0.0761876131981;TFAP2B:-0.0810585677972;IKZF1:-0.0857579291721;STAT1,3:-0.0901112117205;LHX3,4:-0.125716524499;EBF1:-0.153866846455;ZNF143:-0.155662098288;PAX2:-0.158694014209;NRF1:-0.180293971064;ETS1,2:-0.183997640651;MZF1:-0.190349173357;GATA6:-0.20734740127;GTF2A1,2:-0.213338426373;ZNF384:-0.22495408725;SRF:-0.235781069953;CEBPA,B_DDIT3:-0.240990483355;HLF:-0.245370795202;MTE{core}:-0.247431045766;CUX2:-0.249979975602;ATF6:-0.255925533047;ATF2:-0.257988517379;HOX{A5,B5}:-0.264350667401;ESR1:-0.271854814108;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.273448329331;RBPJ:-0.294163862599;ZBTB16:-0.3152467669;MEF2{A,B,C,D}:-0.332811702362;HIC1:-0.342757806344;ALX1:-0.349119269036;DMAP1_NCOR{1,2}_SMARC:-0.356034723721;SPI1:-0.359201807695;IKZF2:-0.359218297558;RORA:-0.366915252009;GTF2I:-0.377778502323;PRRX1,2:-0.380474239722;PRDM1:-0.389549686185;NR3C1:-0.402494895327;RUNX1..3:-0.403600208912;PATZ1:-0.414735735188;SREBF1,2:-0.421430523065;EN1,2:-0.421595968041;ALX4:-0.470229826413;NANOG{mouse}:-0.485774847624;TAL1_TCF{3,4,12}:-0.499541059068;NR5A1,2:-0.500732050111;SPIB:-0.502317076198;HES1:-0.510280741713;AIRE:-0.510428405923;GFI1B:-0.513559719472;FOXL1:-0.519230721669;GFI1:-0.521930127716;CREB1:-0.533790087239;NKX3-2:-0.537025838158;BREu{core}:-0.571997604966;HAND1,2:-0.582653210704;EVI1:-0.593532683823;CRX:-0.595966929185;MYBL2:-0.59760222146;POU5F1:-0.610289527115;SOX5:-0.634431380448;SPZ1:-0.646255088;ZBTB6:-0.692976938881;NFIL3:-0.693778619397;NFE2L2:-0.6961422118;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.716694336209;REST:-0.737529346224;NFIX:-0.742028095182;NKX3-1:-0.757025050995;HMGA1,2:-0.764910628387;ZIC1..3:-0.808071027284;MYFfamily:-0.824667707099;KLF4:-0.837752182666;HOX{A4,D4}:-0.845591032987;RXR{A,B,G}:-0.862208704209;POU3F1..4:-0.862716994972;NHLH1,2:-0.876999475969;AR:-0.878893359396;EP300:-0.889295768634;PAX3,7:-0.893950890381;DBP:-0.940313475503;UFEwm:-0.94186791327;NFATC1..3:-0.948084459863;XBP1:-0.975538148577;HOXA9_MEIS1:-1.00127764264;ZNF238:-1.00750950481;YY1:-1.0159004996;POU6F1:-1.02169069972;T:-1.0356930203;CDX1,2,4:-1.07297632377;PAX4:-1.07784562918;NFE2L1:-1.12104947787;SMAD1..7,9:-1.12694900054;MAFB:-1.13726001911;GZF1:-1.15712235772;HMX1:-1.19081340893;HIF1A:-1.19166379867;PAX6:-1.25776111925;PAX1,9:-1.26976165112;TFAP4:-1.27153031387;GATA4:-1.34025492871;TGIF1:-1.3948312769;GCM1,2:-1.45454534924;FOXP3:-1.52981405157;NKX2-2,8:-1.62591917495
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10417-106C3;search_select_hide=table117:FF:10417-106C3
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:papillotubular adenocarcinoma cell line:TGBC18TKB
Species:Human (Homo sapiens)
Library ID:CNhs10734
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueduodenum
dev stage79 year old adult
sexfemale
age79
cell typeunclassifiable
cell lineTGBC18TKB
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005399
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10734 CAGE DRX007982 DRR008854
Accession ID Hg19

Library idBAMCTSS
CNhs10734 DRZ000279 DRZ001664
Accession ID Hg38

Library idBAMCTSS
CNhs10734 DRZ011629 DRZ013014
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0423
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.312
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0599
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.00826
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0215
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0992
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.00215
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.234
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.55
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0599
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0536
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0599
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.159
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0599
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0155
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.102
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.195
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.202
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0599
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10734

Jaspar motifP-value
MA0002.20.493
MA0003.10.814
MA0004.10.997
MA0006.10.0739
MA0007.10.385
MA0009.10.176
MA0014.10.0741
MA0017.10.0505
MA0018.20.0647
MA0019.10.632
MA0024.10.0202
MA0025.10.0557
MA0027.10.821
MA0028.10.02
MA0029.10.523
MA0030.19.3441e-5
MA0031.10.00271
MA0035.20.0274
MA0038.10.133
MA0039.20.0015
MA0040.10.163
MA0041.10.952
MA0042.10.749
MA0043.10.0575
MA0046.13.65549e-4
MA0047.20.0017
MA0048.10.85
MA0050.18.54814e-4
MA0051.16.51867e-4
MA0052.10.459
MA0055.10.00528
MA0057.10.894
MA0058.10.991
MA0059.10.854
MA0060.10.0949
MA0061.10.314
MA0062.20.0163
MA0065.20.882
MA0066.10.921
MA0067.10.803
MA0068.10.22
MA0069.10.933
MA0070.10.55
MA0071.10.227
MA0072.10.511
MA0073.10.617
MA0074.10.985
MA0076.10.0715
MA0077.10.0952
MA0078.10.684
MA0079.20.156
MA0080.20.776
MA0081.10.0942
MA0083.10.815
MA0084.10.567
MA0087.10.533
MA0088.10.181
MA0090.10.0119
MA0091.10.00472
MA0092.10.124
MA0093.10.946
MA0099.21.13843e-9
MA0100.10.925
MA0101.10.0952
MA0102.20.33
MA0103.11.19672e-8
MA0104.20.464
MA0105.10.127
MA0106.10.494
MA0107.10.0606
MA0108.20.259
MA0111.10.706
MA0112.20.422
MA0113.10.24
MA0114.10.0811
MA0115.10.507
MA0116.10.0607
MA0117.10.389
MA0119.10.921
MA0122.10.27
MA0124.10.255
MA0125.10.0648
MA0131.10.973
MA0135.10.795
MA0136.10.797
MA0137.20.232
MA0138.20.00613
MA0139.10.831
MA0140.10.457
MA0141.10.263
MA0142.10.452
MA0143.10.393
MA0144.10.171
MA0145.10.0681
MA0146.10.0197
MA0147.10.619
MA0148.10.00386
MA0149.10.162
MA0150.10.529
MA0152.10.093
MA0153.13.07851e-4
MA0154.10.657
MA0155.10.486
MA0156.10.435
MA0157.10.33
MA0159.10.27
MA0160.10.654
MA0162.10.977
MA0163.10.00861
MA0164.10.928
MA0258.10.757
MA0259.10.373



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10734

Novel motifP-value
10.434
100.908
1000.928
1010.0737
1020.56
1030.165
1040.875
1050.632
1060.368
1070.877
1080.788
1090.279
110.172
1100.758
1110.259
1120.308
1130.24
1140.119
1150.456
1160.154
1170.0207
1180.931
1190.65
120.564
1200.631
1210.289
1220.354
1230.855
1240.0194
1250.244
1260.834
1270.965
1280.105
1290.236
130.0816
1300.64
1310.0709
1320.394
1330.125
1340.499
1350.0183
1360.0881
1370.112
1380.0936
1390.205
140.878
1400.244
1410.042
1420.765
1430.0145
1440.11
1450.804
1460.361
1470.576
1480.831
1490.344
150.647
1500.245
1510.552
1520.0165
1530.311
1540.488
1550.913
1560.33
1570.429
1580.316
1590.246
160.83
1600.49
1610.302
1620.56
1630.922
1640.987
1650.892
1660.26
1670.627
1680.958
1690.135
170.443
180.0414
190.25
20.83
200.0896
210.794
220.738
230.705
240.918
250.748
260.737
270.485
280.5
290.858
30.534
300.151
310.219
324.06977e-5
330.0571
340.66
350.00335
360.972
370.642
380.529
390.865
40.563
400.423
410.0949
420.942
430.151
440.348
450.255
460.182
470.546
480.617
490.176
50.394
500.192
510.767
520.447
530.833
540.927
550.788
560.711
570.706
580.789
590.544
60.357
600.618
610.254
620.317
630.287
640.362
650.98
660.317
670.359
680.0365
690.294
70.646
700.911
710.371
720.752
730.0106
740.0323
750.389
760.842
770.425
780.0324
790.276
80.0909
800.601
810.00459
827.7262e-4
830.367
840.897
850.254
860.779
870.0677
880.684
890.442
90.554
900.186
910.104
920.337
930.847
940.036
950.0637
960.556
970.383
980.0574
990.76



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10734


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
4929 (tubular adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002108 (small intestine)
0000160 (intestine)
0002394 (bile duct)
0004913 (hepatopancreatic ampulla)
0000058 (duct)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003703 (extrahepatic bile duct)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0002114 (duodenum)
0005409 (gastrointestinal system)
0002294 (biliary system)
0001173 (biliary tree)
0002423 (hepatobiliary system)
0001174 (common bile duct)
0004914 (duodenal papilla)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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