FFCP PHASE1:Hg19::chr21:38378994..38379025,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=53820|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3047|TSSclassifier=S|UniProt=P57055|association_with_transcript=131bp_to_ENST00000329553,NM_018962,uc002yvv.2_5end|coexpression_cluster_id=C38|description=CAGE_peak_1_at_DSCR6_5end|id=chr21:38378994..38379025,+|ontology_enrichment_celltype=CL:0000066!1.10e-22!254;CL:1000507!3.41e-09!12;CL:1000494!3.41e-09!12;CL:1000449!1.26e-07!16;CL:1000497!1.42e-07!18;CL:0002518!1.42e-07!18|ontology_enrichment_celltype_v019=CL:1000507;3.95e-21;10!CL:1000494;3.95e-21;10!CL:1000449;1.05e-16;15!CL:1000497;1.80e-14;17!CL:0002518;1.80e-14;17!CL:0000244;7.00e-11;4!CL:0000731;7.00e-11;4!CL:0002681;1.86e-10;12!CL:0002584;1.86e-10;12!CL:0000239;2.89e-09;3!CL:1000615;2.89e-09;3!CL:0002306;2.89e-09;3!CL:0002322;1.52e-08;5!CL:0000123;4.28e-07;2!CL:0000242;4.28e-07;2|ontology_enrichment_celltype_v019_2=CL:1000507,6.74e-21,10;CL:1000494,6.74e-21,10;CL:0000066,1.26e-20,253;CL:1000449,1.51e-16,15;CL:1000497,2.46e-14,17;CL:0002518,2.46e-14,17;CL:0000244,5.07e-11,4;CL:0000731,5.07e-11,4;CL:0002681,2.38e-10,12;CL:0002584,2.38e-10,12;CL:0000239,3.15e-09,3;CL:1000615,3.15e-09,3;CL:0002306,3.15e-09,3;CL:0002322,1.03e-08,5;CL:0000242,4.11e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!1.56e-19!143;DOID:305!8.94e-19!106;DOID:162!9.34e-10!235;DOID:14566!4.28e-09!239;DOID:3119!1.29e-08!14|ontology_enrichment_disease_v019=DOID:3119;1.36e-13;14!DOID:299;3.87e-07;25!DOID:5093;4.32e-07;4!DOID:1612;4.32e-07;4!DOID:305;6.11e-07;106|ontology_enrichment_disease_v019_2=DOID:305,4.71e-16,106;DOID:0050687,5.18e-16,143;DOID:3119,1.51e-13,14;DOID:162,6.09e-08,235;DOID:14566,1.38e-07,239;DOID:299,4.59e-07,25;DOID:5093,4.65e-07,4;DOID:1612,4.65e-07,4|ontology_enrichment_uberon=UBERON:0001008!2.69e-13!45;UBERON:0006554!1.15e-12!44;UBERON:0003064!1.50e-10!37;UBERON:0009773!3.41e-09!12;UBERON:0001231!3.41e-09!12;UBERON:0004810!3.41e-09!12;UBERON:0006555!1.66e-08!17;UBERON:0005103!1.66e-08!17;UBERON:0000083!1.66e-08!17;UBERON:0009201!1.66e-08!17;UBERON:0004819!1.66e-08!17;UBERON:0006553!1.66e-08!17;UBERON:0003074!1.66e-08!17;UBERON:0003060!1.66e-08!17;UBERON:0000058!2.32e-08!26;UBERON:0002113!7.40e-08!27;UBERON:0003918!7.40e-08!27;UBERON:0005095!7.40e-08!27;UBERON:0007687!7.40e-08!27;UBERON:0000080!8.16e-08!18;UBERON:0002120!8.16e-08!18;UBERON:0004875!8.16e-08!18;UBERON:0005721!8.16e-08!18;UBERON:0005754!8.16e-08!18;UBERON:0007297!8.16e-08!18;UBERON:0005177!9.09e-08!107;UBERON:0000489!1.24e-07!32;UBERON:0004211!1.26e-07!16;UBERON:0001285!1.26e-07!16;UBERON:0007684!1.26e-07!16;UBERON:0003220!1.26e-07!16;UBERON:0004208!1.26e-07!16;UBERON:0009569!1.77e-07!113;UBERON:0005911!4.65e-07!82;UBERON:0003887!5.38e-07!21;UBERON:0005910!5.97e-07!6;UBERON:0000365!9.47e-07!5|ontology_enrichment_uberon_v019=UBERON:0006554;8.00e-25;30!UBERON:0001008;8.00e-25;30!UBERON:0004211;3.95e-21;10!UBERON:0009773;3.95e-21;10!UBERON:0001231;3.95e-21;10!UBERON:0004810;3.95e-21;10!UBERON:0006555;1.05e-16;15!UBERON:0004819;1.05e-16;15!UBERON:0001285;1.05e-16;15!UBERON:0007684;1.05e-16;15!UBERON:0002113;3.04e-16;24!UBERON:0011143;3.04e-16;24!UBERON:0000489;3.19e-15;29!UBERON:0000365;1.57e-13;5!UBERON:0005910;3.28e-11;6!UBERON:0001225;1.86e-10;12!UBERON:0008987;1.86e-10;12!UBERON:0006853;2.89e-09;3!UBERON:0007685;2.89e-09;3!UBERON:0004134;2.89e-09;3!UBERON:0001851;3.90e-08;15!UBERON:0000353;3.90e-08;15!UBERON:0000486;1.19e-07;12!UBERON:0005172;4.80e-07;52!UBERON:0005173;4.80e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0006554,8.45e-22,47;UBERON:0001008,3.22e-21,48;UBERON:0004810,6.74e-21,10;UBERON:0006555,1.18e-18,16;UBERON:0004819,1.18e-18,16;UBERON:0002113,4.85e-17,26;UBERON:0003918,4.85e-17,26;UBERON:0011143,4.85e-17,26;UBERON:0005095,4.85e-17,26;UBERON:0007687,4.85e-17,26;UBERON:0004211,1.51e-16,15;UBERON:0009773,1.51e-16,15;UBERON:0001231,1.51e-16,15;UBERON:0001285,1.51e-16,15;UBERON:0007684,1.51e-16,15;UBERON:0004208,1.51e-16,15;UBERON:0000489,4.70e-16,31;UBERON:0000365,1.15e-13,5;UBERON:0005910,2.54e-11,6;UBERON:0001225,2.38e-10,12;UBERON:0008987,2.38e-10,12;UBERON:0005172,5.03e-10,54;UBERON:0005173,5.03e-10,54;UBERON:0006853,3.15e-09,3;UBERON:0007685,3.15e-09,3;UBERON:0004134,3.15e-09,3;UBERON:0002417,1.29e-08,60;UBERON:0000916,1.29e-08,60;UBERON:0001851,4.72e-08,15;UBERON:0000353,4.72e-08,15;UBERON:0005177,5.64e-08,101;UBERON:0009569,1.61e-07,112|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,4.88460817580699,1.31064823278103,2.63766978228454,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0,1.31550323682941,0.276350017785848,0.289803085735052,0,0,0,0.226618685395132,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0.7285905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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=53820 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3047 | |||
|TSSclassifier=S | |||
|UniProt=P57055 | |||
|association_with_transcript=131bp_to_ENST00000329553,NM_018962,uc002yvv.2_5end | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_1_at_DSCR6_5end | |||
|id=chr21:38378994..38379025,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.10e-22!254;CL:1000507!3.41e-09!12;CL:1000494!3.41e-09!12;CL:1000449!1.26e-07!16;CL:1000497!1.42e-07!18;CL:0002518!1.42e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000507;3.95e-21;10!CL:1000494;3.95e-21;10!CL:1000449;1.05e-16;15!CL:1000497;1.80e-14;17!CL:0002518;1.80e-14;17!CL:0000244;7.00e-11;4!CL:0000731;7.00e-11;4!CL:0002681;1.86e-10;12!CL:0002584;1.86e-10;12!CL:0000239;2.89e-09;3!CL:1000615;2.89e-09;3!CL:0002306;2.89e-09;3!CL:0002322;1.52e-08;5!CL:0000123;4.28e-07;2!CL:0000242;4.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,6.74e-21,10;CL:1000494,6.74e-21,10;CL:0000066,1.26e-20,253;CL:1000449,1.51e-16,15;CL:1000497,2.46e-14,17;CL:0002518,2.46e-14,17;CL:0000244,5.07e-11,4;CL:0000731,5.07e-11,4;CL:0002681,2.38e-10,12;CL:0002584,2.38e-10,12;CL:0000239,3.15e-09,3;CL:1000615,3.15e-09,3;CL:0002306,3.15e-09,3;CL:0002322,1.03e-08,5;CL:0000242,4.11e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.56e-19!143;DOID:305!8.94e-19!106;DOID:162!9.34e-10!235;DOID:14566!4.28e-09!239;DOID:3119!1.29e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:3119;1.36e-13;14!DOID:299;3.87e-07;25!DOID:5093;4.32e-07;4!DOID:1612;4.32e-07;4!DOID:305;6.11e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.71e-16,106;DOID:0050687,5.18e-16,143;DOID:3119,1.51e-13,14;DOID:162,6.09e-08,235;DOID:14566,1.38e-07,239;DOID:299,4.59e-07,25;DOID:5093,4.65e-07,4;DOID:1612,4.65e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001008!2.69e-13!45;UBERON:0006554!1.15e-12!44;UBERON:0003064!1.50e-10!37;UBERON:0009773!3.41e-09!12;UBERON:0001231!3.41e-09!12;UBERON:0004810!3.41e-09!12;UBERON:0006555!1.66e-08!17;UBERON:0005103!1.66e-08!17;UBERON:0000083!1.66e-08!17;UBERON:0009201!1.66e-08!17;UBERON:0004819!1.66e-08!17;UBERON:0006553!1.66e-08!17;UBERON:0003074!1.66e-08!17;UBERON:0003060!1.66e-08!17;UBERON:0000058!2.32e-08!26;UBERON:0002113!7.40e-08!27;UBERON:0003918!7.40e-08!27;UBERON:0005095!7.40e-08!27;UBERON:0007687!7.40e-08!27;UBERON:0000080!8.16e-08!18;UBERON:0002120!8.16e-08!18;UBERON:0004875!8.16e-08!18;UBERON:0005721!8.16e-08!18;UBERON:0005754!8.16e-08!18;UBERON:0007297!8.16e-08!18;UBERON:0005177!9.09e-08!107;UBERON:0000489!1.24e-07!32;UBERON:0004211!1.26e-07!16;UBERON:0001285!1.26e-07!16;UBERON:0007684!1.26e-07!16;UBERON:0003220!1.26e-07!16;UBERON:0004208!1.26e-07!16;UBERON:0009569!1.77e-07!113;UBERON:0005911!4.65e-07!82;UBERON:0003887!5.38e-07!21;UBERON:0005910!5.97e-07!6;UBERON:0000365!9.47e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;8.00e-25;30!UBERON:0001008;8.00e-25;30!UBERON:0004211;3.95e-21;10!UBERON:0009773;3.95e-21;10!UBERON:0001231;3.95e-21;10!UBERON:0004810;3.95e-21;10!UBERON:0006555;1.05e-16;15!UBERON:0004819;1.05e-16;15!UBERON:0001285;1.05e-16;15!UBERON:0007684;1.05e-16;15!UBERON:0002113;3.04e-16;24!UBERON:0011143;3.04e-16;24!UBERON:0000489;3.19e-15;29!UBERON:0000365;1.57e-13;5!UBERON:0005910;3.28e-11;6!UBERON:0001225;1.86e-10;12!UBERON:0008987;1.86e-10;12!UBERON:0006853;2.89e-09;3!UBERON:0007685;2.89e-09;3!UBERON:0004134;2.89e-09;3!UBERON:0001851;3.90e-08;15!UBERON:0000353;3.90e-08;15!UBERON:0000486;1.19e-07;12!UBERON:0005172;4.80e-07;52!UBERON:0005173;4.80e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,8.45e-22,47;UBERON:0001008,3.22e-21,48;UBERON:0004810,6.74e-21,10;UBERON:0006555,1.18e-18,16;UBERON:0004819,1.18e-18,16;UBERON:0002113,4.85e-17,26;UBERON:0003918,4.85e-17,26;UBERON:0011143,4.85e-17,26;UBERON:0005095,4.85e-17,26;UBERON:0007687,4.85e-17,26;UBERON:0004211,1.51e-16,15;UBERON:0009773,1.51e-16,15;UBERON:0001231,1.51e-16,15;UBERON:0001285,1.51e-16,15;UBERON:0007684,1.51e-16,15;UBERON:0004208,1.51e-16,15;UBERON:0000489,4.70e-16,31;UBERON:0000365,1.15e-13,5;UBERON:0005910,2.54e-11,6;UBERON:0001225,2.38e-10,12;UBERON:0008987,2.38e-10,12;UBERON:0005172,5.03e-10,54;UBERON:0005173,5.03e-10,54;UBERON:0006853,3.15e-09,3;UBERON:0007685,3.15e-09,3;UBERON:0004134,3.15e-09,3;UBERON:0002417,1.29e-08,60;UBERON:0000916,1.29e-08,60;UBERON:0001851,4.72e-08,15;UBERON:0000353,4.72e-08,15;UBERON:0005177,5.64e-08,101;UBERON:0009569,1.61e-07,112 | |||
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| |||
|short_description=p1@DSCR6 | |||
}} |
Revision as of 10:17, 12 September 2013
Short description: | p1@DSCR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_DSCR6_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 131bp_to_ENST00000329553, NM_018962, uc002yvv.2_5end |
EntrezGene: | DSCR6 |
HGNC: | 3047 |
UniProt: | P57055 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 6.74e-21 | 10 |
nephron tubule epithelial cell | 6.74e-21 | 10 |
epithelial cell | 1.26e-20 | 253 |
epithelial cell of nephron | 1.51e-16 | 15 |
kidney cell | 2.46e-14 | 17 |
kidney epithelial cell | 2.46e-14 | 17 |
transitional epithelial cell | 5.07e-11 | 4 |
urothelial cell | 5.07e-11 | 4 |
kidney cortical cell | 2.38e-10 | 12 |
renal cortical epithelial cell | 2.38e-10 | 12 |
brush border epithelial cell | 3.15e-09 | 3 |
kidney cortex tubule cell | 3.15e-09 | 3 |
epithelial cell of proximal tubule | 3.15e-09 | 3 |
embryonic stem cell | 1.03e-08 | 5 |
Merkel cell | 4.11e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 8.45e-22 | 47 |
renal system | 3.22e-21 | 48 |
nephron tubule epithelium | 6.74e-21 | 10 |
excretory tube | 1.18e-18 | 16 |
kidney epithelium | 1.18e-18 | 16 |
kidney | 4.85e-17 | 26 |
kidney mesenchyme | 4.85e-17 | 26 |
upper urinary tract | 4.85e-17 | 26 |
kidney rudiment | 4.85e-17 | 26 |
kidney field | 4.85e-17 | 26 |
nephron epithelium | 1.51e-16 | 15 |
renal tubule | 1.51e-16 | 15 |
nephron tubule | 1.51e-16 | 15 |
nephron | 1.51e-16 | 15 |
uriniferous tubule | 1.51e-16 | 15 |
nephrogenic mesenchyme | 1.51e-16 | 15 |
cavitated compound organ | 4.70e-16 | 31 |
urothelium | 1.15e-13 | 5 |
transitional epithelium | 2.54e-11 | 6 |
cortex of kidney | 2.38e-10 | 12 |
renal parenchyma | 2.38e-10 | 12 |
abdomen element | 5.03e-10 | 54 |
abdominal segment element | 5.03e-10 | 54 |
renal cortex tubule | 3.15e-09 | 3 |
region of nephron tubule | 3.15e-09 | 3 |
proximal tubule | 3.15e-09 | 3 |
abdominal segment of trunk | 1.29e-08 | 60 |
abdomen | 1.29e-08 | 60 |
cortex | 4.72e-08 | 15 |
parenchyma | 4.72e-08 | 15 |
trunk region element | 5.64e-08 | 101 |
subdivision of trunk | 1.61e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.71e-16 | 106 |
cell type cancer | 5.18e-16 | 143 |
gastrointestinal system cancer | 1.51e-13 | 14 |
cancer | 6.09e-08 | 235 |
disease of cellular proliferation | 1.38e-07 | 239 |
adenocarcinoma | 4.59e-07 | 25 |
thoracic cancer | 4.65e-07 | 4 |
breast cancer | 4.65e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.