FFCP PHASE1:Hg19::chr19:10688000..10688029,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2474|description=CAGE_peak_at_chr19:10688000..10688029,-|id=chr19:10688000..10688029,-|ontology_enrichment_celltype=CL:0000077!1.52e-21!19;CL:0000066!6.36e-15!254;CL:1000497!5.15e-10!18;CL:0002518!5.15e-10!18;CL:1000507!5.48e-10!12;CL:1000494!5.48e-10!12;CL:1000449!3.45e-08!16|ontology_enrichment_celltype_v019=CL:0000077;2.60e-36;19!CL:1000507;7.35e-21;10!CL:1000494;7.35e-21;10!CL:1000497;4.49e-19;17!CL:0002518;4.49e-19;17!CL:1000449;1.02e-15;15!CL:0002681;1.16e-10;12!CL:0002584;1.16e-10;12!CL:0000239;1.72e-07;3!CL:1000615;1.72e-07;3!CL:0002306;1.72e-07;3|ontology_enrichment_celltype_v019_2=CL:0000077,1.90e-36,19;CL:0000066,1.46e-22,253;CL:1000507,7.14e-21,10;CL:1000494,7.14e-21,10;CL:1000497,4.54e-19,17;CL:0002518,4.54e-19,17;CL:1000449,1.05e-15,15;CL:0002681,1.24e-10,12;CL:0002584,1.24e-10,12;CL:0000213,2.16e-09,58;CL:0000215,2.16e-09,58;CL:0000239,1.70e-07,3;CL:1000615,1.70e-07,3;CL:0002306,1.70e-07,3;CL:0000076,2.55e-07,63|ontology_enrichment_development_v019=UBERON:0008947;7.96e-11;29!UBERON:0003104;4.01e-07;31|ontology_enrichment_disease=DOID:14566!4.10e-15!239;DOID:305!7.07e-15!106;DOID:162!1.28e-13!235;DOID:0050687!1.06e-12!143;DOID:193!2.89e-09!29;DOID:120!6.21e-08!27;DOID:2394!1.09e-07!14|ontology_enrichment_disease_v019=DOID:193;3.86e-07;29|ontology_enrichment_disease_v019_2=DOID:14566,3.58e-18,239;DOID:162,2.63e-17,235;DOID:305,2.26e-16,106;DOID:0050687,8.73e-16,143;DOID:193,3.74e-07,29|ontology_enrichment_uberon=UBERON:0001737!1.04e-12!9;UBERON:0005172!5.42e-12!55;UBERON:0005173!5.42e-12!55;UBERON:0002417!1.36e-11!61;UBERON:0000916!1.36e-11!61;UBERON:0009773!5.48e-10!12;UBERON:0001231!5.48e-10!12;UBERON:0004810!5.48e-10!12;UBERON:0002113!8.70e-09!27;UBERON:0003918!8.70e-09!27;UBERON:0005095!8.70e-09!27;UBERON:0007687!8.70e-09!27;UBERON:0004211!3.45e-08!16;UBERON:0001285!3.45e-08!16;UBERON:0007684!3.45e-08!16;UBERON:0003220!3.45e-08!16;UBERON:0004208!3.45e-08!16;UBERON:0001851!5.59e-08!16;UBERON:0006555!1.65e-07!17;UBERON:0005103!1.65e-07!17;UBERON:0000083!1.65e-07!17;UBERON:0009201!1.65e-07!17;UBERON:0004819!1.65e-07!17;UBERON:0006553!1.65e-07!17;UBERON:0003074!1.65e-07!17;UBERON:0003060!1.65e-07!17;UBERON:0004876!4.61e-07!20;UBERON:0000080!6.58e-07!18;UBERON:0002120!6.58e-07!18;UBERON:0004875!6.58e-07!18;UBERON:0005721!6.58e-07!18;UBERON:0005754!6.58e-07!18;UBERON:0007297!6.58e-07!18|ontology_enrichment_uberon_v019=UBERON:0001737;5.38e-21;9!UBERON:0001557;5.38e-21;9!UBERON:0004211;7.35e-21;10!UBERON:0009773;7.35e-21;10!UBERON:0001231;7.35e-21;10!UBERON:0004810;7.35e-21;10!UBERON:0002113;2.00e-19;24!UBERON:0011143;2.00e-19;24!UBERON:0006555;1.02e-15;15!UBERON:0004819;1.02e-15;15!UBERON:0001285;1.02e-15;15!UBERON:0007684;1.02e-15;15!UBERON:0000489;2.71e-15;29!UBERON:0001851;3.03e-15;15!UBERON:0006554;1.23e-14;30!UBERON:0001008;1.23e-14;30!UBERON:0005172;1.03e-13;52!UBERON:0005173;1.03e-13;52!UBERON:0001225;1.16e-10;12!UBERON:0008987;1.16e-10;12!UBERON:0002417;1.65e-10;58!UBERON:0000916;1.65e-10;58!UBERON:0000353;3.32e-08;15!UBERON:0006853;1.72e-07;3!UBERON:0007685;1.72e-07;3!UBERON:0004134;1.72e-07;3!UBERON:0000072;6.01e-07;37|ontology_enrichment_uberon_v019_2=UBERON:0005172,3.70e-21,54;UBERON:0005173,3.70e-21,54;UBERON:0001737,5.46e-21,9;UBERON:0004810,7.14e-21,10;UBERON:0002417,2.99e-18,60;UBERON:0000916,2.99e-18,60;UBERON:0002113,1.41e-17,26;UBERON:0003918,1.41e-17,26;UBERON:0011143,1.41e-17,26;UBERON:0005095,1.41e-17,26;UBERON:0007687,1.41e-17,26;UBERON:0004211,1.05e-15,15;UBERON:0009773,1.05e-15,15;UBERON:0001231,1.05e-15,15;UBERON:0001285,1.05e-15,15;UBERON:0007684,1.05e-15,15;UBERON:0004208,1.05e-15,15;UBERON:0001851,2.72e-15,15;UBERON:0006555,1.50e-14,16;UBERON:0004819,1.50e-14,16;UBERON:0000489,5.11e-14,31;UBERON:0005177,1.49e-12,101;UBERON:0001225,1.24e-10,12;UBERON:0008987,1.24e-10,12;UBERON:0001557,1.63e-10,19;UBERON:0009569,1.72e-10,112;UBERON:0006554,6.57e-09,47;UBERON:0001008,1.24e-08,48;UBERON:0000353,3.50e-08,15;UBERON:0006853,1.70e-07,3;UBERON:0007685,1.70e-07,3;UBERON:0004134,1.70e-07,3;UBERON:0008947,1.79e-07,38;UBERON:0003258,1.79e-07,38;UBERON:0001041,3.71e-07,87;UBERON:0002369,9.48e-07,3;UBERON:0001235,9.48e-07,3;UBERON:0006858,9.48e-07,3|phase1_expression=0,0,0,0,0.893922188854576,0.872338524100369,0,0,0,0,0,0.218441372130172,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0.408001382488506,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0.722878304769133,0.50133791063589,0,0,0,0.0945348171640679,0.221729397462564,0,6.67993285038334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0.709336764396714,1.1213552002846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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2474 | |||
|description=CAGE_peak_at_chr19:10688000..10688029,- | |||
|id=chr19:10688000..10688029,- | |||
|ontology_enrichment_celltype=CL:0000077!1.52e-21!19;CL:0000066!6.36e-15!254;CL:1000497!5.15e-10!18;CL:0002518!5.15e-10!18;CL:1000507!5.48e-10!12;CL:1000494!5.48e-10!12;CL:1000449!3.45e-08!16 | |||
|ontology_enrichment_celltype_v019=CL:0000077;2.60e-36;19!CL:1000507;7.35e-21;10!CL:1000494;7.35e-21;10!CL:1000497;4.49e-19;17!CL:0002518;4.49e-19;17!CL:1000449;1.02e-15;15!CL:0002681;1.16e-10;12!CL:0002584;1.16e-10;12!CL:0000239;1.72e-07;3!CL:1000615;1.72e-07;3!CL:0002306;1.72e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.90e-36,19;CL:0000066,1.46e-22,253;CL:1000507,7.14e-21,10;CL:1000494,7.14e-21,10;CL:1000497,4.54e-19,17;CL:0002518,4.54e-19,17;CL:1000449,1.05e-15,15;CL:0002681,1.24e-10,12;CL:0002584,1.24e-10,12;CL:0000213,2.16e-09,58;CL:0000215,2.16e-09,58;CL:0000239,1.70e-07,3;CL:1000615,1.70e-07,3;CL:0002306,1.70e-07,3;CL:0000076,2.55e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.96e-11;29!UBERON:0003104;4.01e-07;31 | |||
|ontology_enrichment_disease=DOID:14566!4.10e-15!239;DOID:305!7.07e-15!106;DOID:162!1.28e-13!235;DOID:0050687!1.06e-12!143;DOID:193!2.89e-09!29;DOID:120!6.21e-08!27;DOID:2394!1.09e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:193;3.86e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.58e-18,239;DOID:162,2.63e-17,235;DOID:305,2.26e-16,106;DOID:0050687,8.73e-16,143;DOID:193,3.74e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.04e-12!9;UBERON:0005172!5.42e-12!55;UBERON:0005173!5.42e-12!55;UBERON:0002417!1.36e-11!61;UBERON:0000916!1.36e-11!61;UBERON:0009773!5.48e-10!12;UBERON:0001231!5.48e-10!12;UBERON:0004810!5.48e-10!12;UBERON:0002113!8.70e-09!27;UBERON:0003918!8.70e-09!27;UBERON:0005095!8.70e-09!27;UBERON:0007687!8.70e-09!27;UBERON:0004211!3.45e-08!16;UBERON:0001285!3.45e-08!16;UBERON:0007684!3.45e-08!16;UBERON:0003220!3.45e-08!16;UBERON:0004208!3.45e-08!16;UBERON:0001851!5.59e-08!16;UBERON:0006555!1.65e-07!17;UBERON:0005103!1.65e-07!17;UBERON:0000083!1.65e-07!17;UBERON:0009201!1.65e-07!17;UBERON:0004819!1.65e-07!17;UBERON:0006553!1.65e-07!17;UBERON:0003074!1.65e-07!17;UBERON:0003060!1.65e-07!17;UBERON:0004876!4.61e-07!20;UBERON:0000080!6.58e-07!18;UBERON:0002120!6.58e-07!18;UBERON:0004875!6.58e-07!18;UBERON:0005721!6.58e-07!18;UBERON:0005754!6.58e-07!18;UBERON:0007297!6.58e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.38e-21;9!UBERON:0001557;5.38e-21;9!UBERON:0004211;7.35e-21;10!UBERON:0009773;7.35e-21;10!UBERON:0001231;7.35e-21;10!UBERON:0004810;7.35e-21;10!UBERON:0002113;2.00e-19;24!UBERON:0011143;2.00e-19;24!UBERON:0006555;1.02e-15;15!UBERON:0004819;1.02e-15;15!UBERON:0001285;1.02e-15;15!UBERON:0007684;1.02e-15;15!UBERON:0000489;2.71e-15;29!UBERON:0001851;3.03e-15;15!UBERON:0006554;1.23e-14;30!UBERON:0001008;1.23e-14;30!UBERON:0005172;1.03e-13;52!UBERON:0005173;1.03e-13;52!UBERON:0001225;1.16e-10;12!UBERON:0008987;1.16e-10;12!UBERON:0002417;1.65e-10;58!UBERON:0000916;1.65e-10;58!UBERON:0000353;3.32e-08;15!UBERON:0006853;1.72e-07;3!UBERON:0007685;1.72e-07;3!UBERON:0004134;1.72e-07;3!UBERON:0000072;6.01e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,3.70e-21,54;UBERON:0005173,3.70e-21,54;UBERON:0001737,5.46e-21,9;UBERON:0004810,7.14e-21,10;UBERON:0002417,2.99e-18,60;UBERON:0000916,2.99e-18,60;UBERON:0002113,1.41e-17,26;UBERON:0003918,1.41e-17,26;UBERON:0011143,1.41e-17,26;UBERON:0005095,1.41e-17,26;UBERON:0007687,1.41e-17,26;UBERON:0004211,1.05e-15,15;UBERON:0009773,1.05e-15,15;UBERON:0001231,1.05e-15,15;UBERON:0001285,1.05e-15,15;UBERON:0007684,1.05e-15,15;UBERON:0004208,1.05e-15,15;UBERON:0001851,2.72e-15,15;UBERON:0006555,1.50e-14,16;UBERON:0004819,1.50e-14,16;UBERON:0000489,5.11e-14,31;UBERON:0005177,1.49e-12,101;UBERON:0001225,1.24e-10,12;UBERON:0008987,1.24e-10,12;UBERON:0001557,1.63e-10,19;UBERON:0009569,1.72e-10,112;UBERON:0006554,6.57e-09,47;UBERON:0001008,1.24e-08,48;UBERON:0000353,3.50e-08,15;UBERON:0006853,1.70e-07,3;UBERON:0007685,1.70e-07,3;UBERON:0004134,1.70e-07,3;UBERON:0008947,1.79e-07,38;UBERON:0003258,1.79e-07,38;UBERON:0001041,3.71e-07,87;UBERON:0002369,9.48e-07,3;UBERON:0001235,9.48e-07,3;UBERON:0006858,9.48e-07,3 | |||
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|short_description=p@chr19:10688000..10688029,- | |||
}} |
Revision as of 18:35, 11 September 2013
Short description: | p@chr19:10688000..10688029, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:10688000..10688029, - |
Coexpression cluster: | C2474_mesothelioma_Hep2_clear_Renal_nonsmall_renal_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.90e-36 | 19 |
epithelial cell | 1.46e-22 | 253 |
kidney tubule cell | 7.14e-21 | 10 |
nephron tubule epithelial cell | 7.14e-21 | 10 |
kidney cell | 4.54e-19 | 17 |
kidney epithelial cell | 4.54e-19 | 17 |
epithelial cell of nephron | 1.05e-15 | 15 |
kidney cortical cell | 1.24e-10 | 12 |
renal cortical epithelial cell | 1.24e-10 | 12 |
lining cell | 2.16e-09 | 58 |
barrier cell | 2.16e-09 | 58 |
brush border epithelial cell | 1.70e-07 | 3 |
kidney cortex tubule cell | 1.70e-07 | 3 |
epithelial cell of proximal tubule | 1.70e-07 | 3 |
squamous epithelial cell | 2.55e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.58e-18 | 239 |
cancer | 2.63e-17 | 235 |
carcinoma | 2.26e-16 | 106 |
cell type cancer | 8.73e-16 | 143 |
reproductive organ cancer | 3.74e-07 | 29 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.