FFCP PHASE1:Hg19::chr10:102505493..102505546,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5076|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8616|TSSclassifier=S|UniProt=Q02962|association_with_transcript=25bp_to_ENST00000355243,ENST00000361791,ENST00000370294,ENST00000370296,ENST00000428433,NM_000278,NM_003987,NM_003988,NM_003989,NM_003990,uc001krk.3,uc001krl.3,uc001krm.3,uc001krn.3,uc001kro.3,uc010qps.1_5end|coexpression_cluster_id=C1556|description=CAGE_peak_2_at_PAX2_5end|id=chr10:102505493..102505546,+|ontology_enrichment_celltype=CL:1000497!1.49e-24!18;CL:0002518!1.49e-24!18;CL:1000507!1.79e-23!12;CL:1000494!1.79e-23!12;CL:1000449!3.08e-20!16;CL:0002681!5.53e-14!13;CL:0002584!5.53e-14!13;CL:0000239!2.32e-08!3;CL:1000615!2.32e-08!3;CL:0002306!2.32e-08!3;CL:0000650!8.48e-08!3;CL:1000618!8.48e-08!3;CL:1001318!8.48e-08!3;CL:0002173!8.48e-08!3;CL:1000500!8.48e-08!3|ontology_enrichment_celltype_v019=CL:1000507;7.97e-53;10!CL:1000494;7.97e-53;10!CL:1000497;1.20e-51;17!CL:0002518;1.20e-51;17!CL:1000449;7.50e-42;15!CL:0002681;1.09e-27;12!CL:0002584;1.09e-27;12!CL:0000239;8.26e-17;3!CL:1000615;8.26e-17;3!CL:0002306;8.26e-17;3!CL:0000650;4.43e-12;2!CL:1000500;4.43e-12;2!CL:1000618;4.43e-12;2!CL:1001318;4.43e-12;2!CL:0002173;4.43e-12;2!CL:1000746;1.40e-07;7!CL:1000612;1.40e-07;7|ontology_enrichment_celltype_v019_2=CL:1000507,7.76e-53,10;CL:1000494,7.76e-53,10;CL:1000497,1.20e-51,17;CL:0002518,1.20e-51,17;CL:1000449,7.50e-42,15;CL:0002681,1.11e-27,12;CL:0002584,1.11e-27,12;CL:0000239,8.48e-17,3;CL:1000615,8.48e-17,3;CL:0002306,8.48e-17,3;CL:0000650,4.43e-12,2;CL:1000500,4.43e-12,2;CL:1000618,4.43e-12,2;CL:1001318,4.43e-12,2;CL:0002173,4.43e-12,2;CL:1000746,1.42e-07,7;CL:1000612,1.42e-07,7|ontology_enrichment_development_v019=UBERON:0003918;2.00e-19;10!UBERON:0007687;2.00e-19;10!UBERON:0007297;1.55e-12;2!UBERON:0005754;4.33e-07;1|ontology_enrichment_disease=DOID:0050687!8.88e-07!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000489!5.67e-38!32;UBERON:0002113!1.47e-35!27;UBERON:0003918!1.47e-35!27;UBERON:0005095!1.47e-35!27;UBERON:0007687!1.47e-35!27;UBERON:0000080!1.16e-24!18;UBERON:0002120!1.16e-24!18;UBERON:0004875!1.16e-24!18;UBERON:0005721!1.16e-24!18;UBERON:0005754!1.16e-24!18;UBERON:0007297!1.16e-24!18;UBERON:0000058!1.17e-23!26;UBERON:0009773!1.79e-23!12;UBERON:0001231!1.79e-23!12;UBERON:0004810!1.79e-23!12;UBERON:0006554!2.23e-23!44;UBERON:0001008!1.05e-22!45;UBERON:0006555!1.93e-22!17;UBERON:0005103!1.93e-22!17;UBERON:0000083!1.93e-22!17;UBERON:0009201!1.93e-22!17;UBERON:0004819!1.93e-22!17;UBERON:0006553!1.93e-22!17;UBERON:0003074!1.93e-22!17;UBERON:0003060!1.93e-22!17;UBERON:0004876!8.68e-22!20;UBERON:0003887!1.47e-20!21;UBERON:0004211!3.08e-20!16;UBERON:0001285!3.08e-20!16;UBERON:0007684!3.08e-20!16;UBERON:0003220!3.08e-20!16;UBERON:0004208!3.08e-20!16;UBERON:0005172!5.18e-19!55;UBERON:0005173!5.18e-19!55;UBERON:0002417!1.88e-16!61;UBERON:0000916!1.88e-16!61;UBERON:0005177!4.84e-16!107;UBERON:0003886!3.71e-15!63;UBERON:0003103!4.17e-15!69;UBERON:0003064!4.24e-15!37;UBERON:0001225!5.53e-14!13;UBERON:0008987!5.53e-14!13;UBERON:0001851!1.05e-13!16;UBERON:0002553!5.64e-13!70;UBERON:0003135!7.22e-13!11;UBERON:0000353!2.54e-12!17;UBERON:0000464!4.57e-10!104;UBERON:0000473!5.47e-10!8;UBERON:0009569!6.84e-10!113;UBERON:0006947!7.94e-09!3;UBERON:0004054!7.94e-09!3;UBERON:0000466!1.88e-08!126;UBERON:0006853!2.32e-08!3;UBERON:0007685!2.32e-08!3;UBERON:0004134!2.32e-08!3;UBERON:0003567!8.48e-08!3;UBERON:0003838!8.48e-08!3;UBERON:0005169!8.48e-08!3;UBERON:0002321!8.48e-08!3;UBERON:0005215!8.48e-08!3;UBERON:0002303!8.48e-08!3;UBERON:0002319!8.48e-08!3;UBERON:0003101!3.76e-07!22;UBERON:0000079!3.76e-07!22|ontology_enrichment_uberon_v019=UBERON:0002113;1.11e-54;24!UBERON:0011143;1.11e-54;24!UBERON:0004211;7.97e-53;10!UBERON:0009773;7.97e-53;10!UBERON:0001231;7.97e-53;10!UBERON:0004810;7.97e-53;10!UBERON:0000489;1.22e-44;29!UBERON:0006554;4.93e-43;30!UBERON:0001008;4.93e-43;30!UBERON:0006555;7.50e-42;15!UBERON:0004819;7.50e-42;15!UBERON:0001285;7.50e-42;15!UBERON:0007684;7.50e-42;15!UBERON:0001851;8.96e-28;15!UBERON:0001225;1.09e-27;12!UBERON:0008987;1.09e-27;12!UBERON:0000353;6.55e-22;15!UBERON:0006947;7.67e-18;3!UBERON:0004054;7.67e-18;3!UBERON:0006853;8.26e-17;3!UBERON:0007685;8.26e-17;3!UBERON:0004134;8.26e-17;3!UBERON:0005172;1.96e-15;52!UBERON:0005173;1.96e-15;52!UBERON:0002417;2.09e-14;58!UBERON:0000916;2.09e-14;58!UBERON:0005904;1.66e-13;4!UBERON:0003135;2.71e-12;11!UBERON:0003567;4.43e-12;2!UBERON:0003838;4.43e-12;2!UBERON:0003586;4.43e-12;2!UBERON:0005169;4.43e-12;2!UBERON:0002321;4.43e-12;2!UBERON:0005215;4.43e-12;2!UBERON:0002303;4.43e-12;2!UBERON:0002319;4.43e-12;2!UBERON:0003103;8.26e-10;61!UBERON:0000058;4.03e-09;10!UBERON:0005177;1.50e-08;99!UBERON:0000074;1.40e-07;7!UBERON:0001229;1.40e-07;7!UBERON:0001301;4.09e-07;1!UBERON:0000998;4.33e-07;1!UBERON:0006868;4.33e-07;1!UBERON:0001000;5.13e-07;1!UBERON:0005352;5.13e-07;1|ontology_enrichment_uberon_v019_2=UBERON:000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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5076 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8616 | |||
|TSSclassifier=S | |||
|UniProt=Q02962 | |||
|association_with_transcript=25bp_to_ENST00000355243,ENST00000361791,ENST00000370294,ENST00000370296,ENST00000428433,NM_000278,NM_003987,NM_003988,NM_003989,NM_003990,uc001krk.3,uc001krl.3,uc001krm.3,uc001krn.3,uc001kro.3,uc010qps.1_5end | |||
|coexpression_cluster_id=C1556 | |||
|description=CAGE_peak_2_at_PAX2_5end | |||
|id=chr10:102505493..102505546,+ | |||
|ontology_enrichment_celltype=CL:1000497!1.49e-24!18;CL:0002518!1.49e-24!18;CL:1000507!1.79e-23!12;CL:1000494!1.79e-23!12;CL:1000449!3.08e-20!16;CL:0002681!5.53e-14!13;CL:0002584!5.53e-14!13;CL:0000239!2.32e-08!3;CL:1000615!2.32e-08!3;CL:0002306!2.32e-08!3;CL:0000650!8.48e-08!3;CL:1000618!8.48e-08!3;CL:1001318!8.48e-08!3;CL:0002173!8.48e-08!3;CL:1000500!8.48e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;7.97e-53;10!CL:1000494;7.97e-53;10!CL:1000497;1.20e-51;17!CL:0002518;1.20e-51;17!CL:1000449;7.50e-42;15!CL:0002681;1.09e-27;12!CL:0002584;1.09e-27;12!CL:0000239;8.26e-17;3!CL:1000615;8.26e-17;3!CL:0002306;8.26e-17;3!CL:0000650;4.43e-12;2!CL:1000500;4.43e-12;2!CL:1000618;4.43e-12;2!CL:1001318;4.43e-12;2!CL:0002173;4.43e-12;2!CL:1000746;1.40e-07;7!CL:1000612;1.40e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,7.76e-53,10;CL:1000494,7.76e-53,10;CL:1000497,1.20e-51,17;CL:0002518,1.20e-51,17;CL:1000449,7.50e-42,15;CL:0002681,1.11e-27,12;CL:0002584,1.11e-27,12;CL:0000239,8.48e-17,3;CL:1000615,8.48e-17,3;CL:0002306,8.48e-17,3;CL:0000650,4.43e-12,2;CL:1000500,4.43e-12,2;CL:1000618,4.43e-12,2;CL:1001318,4.43e-12,2;CL:0002173,4.43e-12,2;CL:1000746,1.42e-07,7;CL:1000612,1.42e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0003918;2.00e-19;10!UBERON:0007687;2.00e-19;10!UBERON:0007297;1.55e-12;2!UBERON:0005754;4.33e-07;1 | |||
|ontology_enrichment_disease=DOID:0050687!8.88e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p2@PAX2 | |||
}} |
Revision as of 11:20, 10 September 2013
Short description: | p2@PAX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PAX2_5end |
Coexpression cluster: | C1556_epididymis_seminal_Renal_ductus_kidney_rhabdomyosarcoma_renal |
Association with transcript: | 25bp_to_ENST00000355243, ENST00000361791, ENST00000370294, ENST00000370296, ENST00000428433, NM_000278, NM_003987, NM_003988, NM_003989, NM_003990, uc001krk.3, uc001krl.3, uc001krm.3, uc001krn.3, uc001kro.3, uc010qps.1_5end |
EntrezGene: | PAX2 |
HGNC: | 8616 |
UniProt: | Q02962 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 7.76e-53 | 10 |
nephron tubule epithelial cell | 7.76e-53 | 10 |
kidney cell | 1.20e-51 | 17 |
kidney epithelial cell | 1.20e-51 | 17 |
epithelial cell of nephron | 7.50e-42 | 15 |
kidney cortical cell | 1.11e-27 | 12 |
renal cortical epithelial cell | 1.11e-27 | 12 |
brush border epithelial cell | 8.48e-17 | 3 |
kidney cortex tubule cell | 8.48e-17 | 3 |
epithelial cell of proximal tubule | 8.48e-17 | 3 |
mesangial cell | 4.43e-12 | 2 |
kidney interstitial cell | 4.43e-12 | 2 |
juxtaglomerular complex cell | 4.43e-12 | 2 |
renal interstitial pericyte | 4.43e-12 | 2 |
extraglomerular mesangial cell | 4.43e-12 | 2 |
glomerular cell | 1.42e-07 | 7 |
kidney corpuscule cell | 1.42e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.