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{{f5samples
{{f5samples
|id=FF:10439-106E7
|DRA_sample_Accession=CAGE@SAMD00005252
|name=prostate cancer cell line:PC-3, biol_rep1
|accession_numbers=CAGE;DRX007988;DRR008860;DRZ000285;DRZ001670;DRZ011635;DRZ013020
|sample_id=10439
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|rna_tube_id=106E7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|rna_position=E7
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101019,FF:0101033,FF:0101061
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB2145
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!2.36!258.61!PPARG;;chr14:38064429..38064486,-!p1@FOXA1!1.75!54.61!FOXA1;;chr6:34524093..34524135,-!p1@SPDEF!1.65!44.16!SPDEF;;chr17:46806016..46806029,-!p5@HOXB13!1.60!38.93!HOXB13;;chr12:66218255..66218304,+!p3@HMGA2!1.58!96.77!HMGA2;;chr10:38146482..38146507,-!p4@ZNF248!1.58!40.93!ZNF248;;chr17:46806035..46806059,-!p2@HOXB13!1.57!36.37!HOXB13;;chr17:46806067..46806097,-!p1@HOXB13!1.52!31.81!HOXB13;;chr21:38071430..38071456,+!p1@SIM2!1.48!29.03!SIM2;;chr11:65686802..65686818,+!p6@DRAP1!1.43!43.94!DRAP1;;chr17:46806419..46806438,-!p4@HOXB13!1.42!25.58!HOXB13;;chr6:34524049..34524089,-!p2@SPDEF!1.39!23.69!SPDEF;;chr1:201979703..201979721,+!p2@ELF3!1.39!23.58!ELF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.59!TFAP2C;;chr1:201979743..201979762,+!p1@ELF3!1.36!22.14!ELF3;;chr2:166326200..166326216,+!p1@CSRNP3!1.33!29.48!CSRNP3;;chr12:26277817..26277863,-!p2@BHLHE41!1.33!27.47!BHLHE41;;chr11:34642612..34642646,+!p1@EHF!1.33!20.36!EHF;;chr17:46806373..46806386,-!p6@HOXB13!1.29!18.69!HOXB13;;chr7:27205136..27205164,-!p1@HOXA9!1.28!17.91!HOXA9;;chr11:65667846..65667868,-!p1@FOSL1!1.27!449.93!FOSL1;;chr8:102504651..102504683,+!p1@GRHL2!1.26!17.35!GRHL2;;chr11:65686732..65686756,+!p2@DRAP1!1.25!70.08!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!1.23!464.95!HMGA1;;chr17:41623692..41623715,-!p1@ETV4!1.23!67.18!ETV4;;chr6:34524025..34524045,-!p3@SPDEF!1.22!15.46!SPDEF;;chr12:66218212..66218244,+!p5@HMGA2!1.21!22.25!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!1.18!18.46!NFATC2;;chr14:37131058..37131139,+!p1@PAX9!1.18!14.13!PAX9;;chr2:237076992..237077008,-!p2@GBX2!1.18!14.02!GBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.07!NR2F1;;chr7:27205106..27205134,-!p2@HOXA9!1.17!13.90!HOXA9;;chr12:26277956..26277980,-!p1@BHLHE41!1.16!47.94!BHLHE41;;chr11:65667884..65667895,-!p2@FOSL1!1.15!51.17!FOSL1;;chr10:38146510..38146576,-!p1@ZNF248!1.14!36.82!ZNF248;;chr12:27485762..27485776,+!p3@ARNTL2!1.14!34.70!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!1.13!18.91!ETV4;;chr4:81118647..81118666,+!p1@PRDM8!1.13!16.68!PRDM8;;chr6:10412600..10412637,-!p1@TFAP2A!1.12!20.24!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.11!55.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.11!22.80!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.10!11.68!HES2;;chr15:67418047..67418093,+!p4@SMAD3!1.09!14.24!SMAD3;;chr17:70117153..70117174,+!p1@SOX9!1.08!114.35!SOX9;;chr3:12329358..12329393,+!p3@PPARG!1.08!27.70!PPARG;;chr3:32023232..32023273,+!p1@ZNF860!1.07!15.46!ZNF860;;chr17:46806404..46806415,-!p7@HOXB13!1.07!10.79!HOXB13;;chr19:13134772..13134822,+!p2@NFIX!1.06!15.46!NFIX;;chr7:27224842..27224872,-!p1@HOXA11!1.06!10.46!HOXA11;;chr2:237077022..237077038,-!p1@GBX2!1.06!10.46!GBX2;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.24!ETV4;;chr3:169381420..169381535,-!p1@MECOM!1.05!12.12!MECOM;;chr15:67418119..67418162,+!p5@SMAD3!1.04!11.01!SMAD3;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.70!OSR1;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.35!BHLHE41;;chr7:27239703..27239715,-!p1@HOXA13!1.01!9.23!HOXA13;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!36.82!ZFHX4;;chr20:55205825..55205847,+!p2@TFAP2C!0.98!8.56!TFAP2C;;chr13:73633131..73633149,+!p1@KLF5!0.97!92.43!KLF5;;chr8:80679993..80680011,-!p1@HEY1!0.97!12.24!HEY1;;chr7:27224795..27224840,-!p2@HOXA11!0.97!8.34!HOXA11;;chr20:22564895..22564910,-!p1@FOXA2!0.97!8.34!FOXA2;;chr1:42384532..42384603,-!p2@HIVEP3!0.97!8.23!HIVEP3;;chr12:27485785..27485816,+!p1@ARNTL2!0.96!57.73!ARNTL2;;chr1:209979467..209979494,-!p1@IRF6!0.96!9.12!IRF6;;chr22:19748231..19748317,+!p1@TBX1!0.96!8.12!TBX1;;chr5:92918860..92918871,+!p10@NR2F1!0.95!8.90!NR2F1;;chr10:135122868..135122893,+!p3@ZNF511!0.94!7.79!ZNF511;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.35!PPARG;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.23!SOX7;;chr17:46682321..46682362,-!p1@HOXB6!0.92!7.23!HOXB6;;chr10:64134120..64134183,+!p1@ZNF365!0.91!8.79!ZNF365;;chr3:128212033..128212051,-!p1@GATA2!0.91!7.12!GATA2;;chr2:101436564..101436647,+!p1@NPAS2!0.90!146.71!NPAS2;;chr12:66218836..66218888,+!p1@HMGA2!0.90!68.30!HMGA2;;chr10:114710098..114710130,+!p2@TCF7L2!0.90!54.95!TCF7L2;;chr7:26191809..26191890,+!p1@NFE2L3!0.90!35.71!NFE2L3;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.47!SIX1;;chr3:21792585..21792625,-!p2@ZNF385D!0.89!7.56!ZNF385D;;chr10:64134045..64134083,+!p3@ZNF365!0.89!6.67!ZNF365;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.01!ZNF695;;chr12:27485823..27485868,+!p2@ARNTL2!0.87!27.59!ARNTL2;;chr7:42276787..42276815,-!p1@GLI3!0.87!18.13!GLI3;;chr15:96869511..96869525,+!p16@NR2F2!0.87!7.23!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.86!88.43!ZNF503;;chr21:27107465..27107557,+!p3@GABPA!0.86!23.91!GABPA;;chr5:92918894..92918912,+!p2@NR2F1!0.86!21.69!NR2F1;;chr12:66218378..66218401,+!p6@HMGA2!0.86!9.90!HMGA2;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.01!PAX6;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.01!IRX2;;chr5:92918768..92918783,+!p8@NR2F1!0.84!5.90!NR2F1;;chr10:135122906..135122921,+!p4@ZNF511!0.84!5.90!ZNF511;;chr8:145669791..145669834,-!p1@TONSL!0.83!17.35!TONSL;;chr17:41623009..41623053,-!p4@ETV4!0.82!9.45!ETV4;;chr17:46806098..46806118,-!p3@HOXB13!0.82!5.67!HOXB13;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.67!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!0.82!5.67!SIM2;;chr21:38071462..38071474,+!p3@SIM2!0.82!5.67!SIM2;;chr10:77161533..77161546,-!p2@ZNF503!0.81!23.02!ZNF503;;chr10:76585303..76585354,+!p4@KAT6B!0.81!8.12!KAT6B;;chr14:38064590..38064606,-!p2@FOXA1!0.81!5.45!FOXA1;;chr11:120107344..120107351,+!p1@POU2F3!0.80!6.56!POU2F3;;chr8:116681409..116681431,-!p2@TRPS1!0.79!15.13!TRPS1;;chr6:1312325..1312340,+!p1@FOXQ1!0.79!8.68!FOXQ1;;chr17:41622834..41622883,-!p6@ETV4!0.79!6.45!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.79!5.12!ETV4;;chr12:115121962..115121987,-!p1@TBX3!0.78!46.61!TBX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.23!TFAP2A;;chr17:46806554..46806558,-!p9@HOXB13!0.78!5.01!HOXB13;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.89!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.77!4.89!HMGA2;;chr14:55493763..55493824,-!p1@WDHD1!0.76!39.82!WDHD1;;chr5:134369905..134369972,-!p1@PITX1!0.76!7.67!PITX1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.76!6.12!L3MBTL4;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.34!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.56!SIX2;;chr11:65554528..65554546,+!p1@OVOL1!0.75!4.56!OVOL1;;chr10:38146468..38146475,-!p12@ZNF248!0.74!4.45!ZNF248;;chr7:14029283..14029311,-!p1@ETV1!0.73!25.69!ETV1;;chr20:50159198..50159299,-!p1@NFATC2!0.73!6.67!NFATC2;;chr10:76585205..76585251,+!p3@KAT6B!0.72!10.01!KAT6B;;chr4:81104985..81105005,+!p4@PRDM8!0.72!5.34!PRDM8;;chr17:41623667..41623682,-!p8@ETV4!0.72!4.56!ETV4;;chr20:22565185..22565223,-!p3@FOXA2!0.72!4.23!FOXA2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.23!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.72!4.23!GRHL2;;chr8:76319876..76319926,+!p1@HNF4G!0.72!4.23!HNF4G;;chr6:34204672..34204692,+!p1@HMGA1!0.71!527.35!HMGA1;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.57!TWIST1;;chr19:12163769..12163798,-!p1@ZNF878!0.71!5.56!ZNF878;;chr5:92919452..92919496,+!p11@NR2F1!0.71!4.12!NR2F1;;chr7:27239740..27239759,-!p2@HOXA13!0.71!4.12!HOXA13;;chr6:21597600..21597664,+!p3@SOX4!0.70!7.12!SOX4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr20:42295745..42295765,+!p1@MYBL2!0.69!72.52!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.69!25.92!MYBL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.69!4.56!TFAP2A;;chr12:124873852..124873881,-!p3@NCOR2!0.68!25.81!NCOR2;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.67!DRAP1;;chr10:8095593..8095625,+!p3@GATA3!0.68!4.56!GATA3;;chr7:27192185..27192209,-!p1@HOXA3!0.68!3.78!HOXA3;;chr15:96874012..96874042,+!p2@NR2F2!0.67!38.15!NR2F2;;chr20:32274179..32274213,-!p1@E2F1!0.67!28.03!E2F1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.67!18.91!TAL1;;chr10:35415882..35415941,+!p4@CREM!0.67!18.69!CREM;;chr7:138666053..138666146,-!p1@KIAA1549!0.67!17.24!KIAA1549;;chr1:247171347..247171366,-!p2@ZNF695!0.67!7.23!ZNF695;;chr5:92919100..92919135,+!p3@NR2F1!0.67!4.56!NR2F1;;chrX:128657413..128657456,-!p2@SMARCA1!0.66!36.04!SMARCA1;;chr1:935398..935465,-!p2@HES4!0.66!8.12!HES4;;chr12:26278008..26278024,-!p4@BHLHE41!0.66!4.45!BHLHE41;;chr3:193853927..193853944,+!p1@HES1!0.65!132.59!HES1;;chr12:2986206..2986258,-!p2@FOXM1!0.65!24.36!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.65!11.68!GLI3;;chr19:22817119..22817145,+!p1@ZNF492!0.65!6.23!ZNF492;;chr19:17356189..17356221,-!p2@NR2F6!0.65!6.12!NR2F6;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.89!DRAP1;;chr15:67418099..67418118,+!p16@SMAD3!0.65!3.45!SMAD3;;chr19:3574330..3574393,+!p2@HMG20B!0.64!3.34!HMG20B;;chr10:76586348..76586366,+!p1@KAT6B!0.63!29.14!KAT6B;;chr11:65554563..65554576,+!p2@OVOL1!0.63!3.23!OVOL1;;chr19:23433144..23433204,-!p1@ZNF724P!0.62!16.68!ZNF724P;;chr12:66218152..66218174,+!p10@HMGA2!0.62!3.45!HMGA2;;chr5:88178983..88179012,-!p1@MEF2C!0.61!28.36!MEF2C;;chr8:146228270..146228295,-!p1@ZNF252!0.61!20.36!ZNF252P;;chr9:124976185..124976212,-!p4@LHX6!0.61!3.11!LHX6;;chr7:64838786..64838809,+!p2@ZNF92!0.60!20.02!ZNF92;;chr17:56065729..56065781,-!p2@VEZF1!0.60!15.13!VEZF1;;chr3:24536253..24536328,-!p1@THRB!0.60!6.23!THRB;;chr19:13134457..13134462,+!p5@NFIX!0.60!5.90!NFIX;;chr12:66218443..66218461,+!p8@HMGA2!0.60!4.00!HMGA2;;chr17:41623259..41623278,-!p7@ETV4!0.60!3.56!ETV4;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!0.60!3.00!TFAP2A;;chr19:53193731..53193767,-!p1@ZNF83!0.59!31.70!ZNF83;;chr19:53496768..53496799,-!p1@ZNF702P!0.59!4.89!ZNF702P;;chr18:56531584..56531646,+!p4@ZNF532!0.59!4.12!ZNF532;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.23!NR2F1;;chr5:134369879..134369898,-!p2@PITX1!0.59!2.89!PITX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.59!2.89!TFAP2A;;chr17:45928443..45928473,-!p2@SP6!0.59!2.89!SP6;;chr2:63277948..63277974,+!p1@OTX1!0.59!2.89!OTX1;;chr10:114709999..114710031,+!p1@TCF7L2!0.58!81.20!TCF7L2;;chr18:19749541..19749557,+!p1@GATA6!0.58!10.46!GATA6;;chr17:41623716..41623727,-!p12@ETV4!0.58!2.78!ETV4;;chr14:38064495..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|sample_dev_stage=62 year old adult
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0009847,UBERON:0003353,UBERON:0010316
|sample_tissue=prostate
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=62
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=1.94000
|rna_od260/280=2.07000
|sample_cell_type=unclassifiable
|sample_cell_line=PC-3
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=prostate cancer
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=59.24300
|rna_concentration=2.36972
|sample_note=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000079,UBERON:0000119,UBERON:0000161,UBERON:0000162,UBERON:0000163,UBERON:0000164,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000990,UBERON:0001007,UBERON:0001046,UBERON:0001062,UBERON:0001353,UBERON:0001555,UBERON:0002050,UBERON:0002367,UBERON:0002530,UBERON:0002532,UBERON:0003064,UBERON:0003101,UBERON:0003104,UBERON:0003353,UBERON:0003820,UBERON:0003929,UBERON:0003937,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004122,UBERON:0004185,UBERON:0004902,UBERON:0004921,UBERON:0005153,UBERON:0005156,UBERON:0005291,UBERON:0005399,UBERON:0005423,UBERON:0005911,UBERON:0006866,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
 
|fonse_cell_line=FF:0101019,FF:0101120
|fonse_cell_line=FF:0101019,FF:0101120
|fonse_cell_line_closure=FF:0101019,FF:0101120
|fonse_cell_line_closure=FF:0101019,FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aPC-3.CNhs11243.10439-106E7.hg38.nobarcode.ctss.bed.gz
|id=FF:10439-106E7
|is_a=EFO:0002091;;FF:0000210;;FF:0101061
|is_obsolete=
|library_id=CNhs11243
|library_id_phase_based=2:CNhs11243
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10439
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10439
|name=prostate cancer cell line:PC-3
|namespace=FANTOM5
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|rna_box=106
|rna_catalog_number=
|rna_concentration=2.36972
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.94
|rna_od260/280=2.07
|rna_position=E7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.06E+09
|rna_weight_ug=59.243
|sample_age=62
|sample_category=cell lines
|sample_cell_catalog=RCB2145
|sample_cell_line=PC-3
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=62 year old adult
|sample_disease=prostate cancer
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.71265110036965e-260!GO:0043226;organelle;1.2028914529622e-210!GO:0043229;intracellular organelle;2.87842409060661e-210!GO:0043231;intracellular membrane-bound organelle;1.13693126066376e-205!GO:0043227;membrane-bound organelle;2.2137273883815e-205!GO:0005737;cytoplasm;6.09166809619689e-184!GO:0044422;organelle part;8.11981216042034e-160!GO:0044446;intracellular organelle part;1.83399394679892e-158!GO:0044444;cytoplasmic part;1.00166362199481e-129!GO:0032991;macromolecular complex;1.49657901390553e-108!GO:0030529;ribonucleoprotein complex;1.39336427630298e-90!GO:0044237;cellular metabolic process;4.8055052725363e-89!GO:0005634;nucleus;4.87844895678258e-88!GO:0044238;primary metabolic process;4.87844895678258e-88!GO:0044428;nuclear part;4.73652631524822e-83!GO:0043170;macromolecule metabolic process;2.77231662317685e-82!GO:0043233;organelle lumen;7.36142570585563e-82!GO:0031974;membrane-enclosed lumen;7.36142570585563e-82!GO:0003723;RNA binding;2.00987699986775e-74!GO:0005739;mitochondrion;1.04489935507158e-72!GO:0005515;protein binding;9.8915360242923e-69!GO:0006396;RNA processing;3.98437303334655e-57!GO:0043234;protein complex;6.87168586104466e-55!GO:0016043;cellular component organization and biogenesis;9.03754859412548e-54!GO:0005840;ribosome;3.4797145549331e-53!GO:0031981;nuclear lumen;2.63058787611169e-52!GO:0043283;biopolymer metabolic process;6.25015094127314e-52!GO:0006412;translation;1.10670796897478e-50!GO:0031090;organelle membrane;4.78595461558738e-50!GO:0044429;mitochondrial part;4.93265276285033e-48!GO:0015031;protein transport;7.95206637472597e-47!GO:0033036;macromolecule localization;8.97685831932443e-47!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.05166218802022e-46!GO:0003735;structural constituent of ribosome;3.87329733736323e-45!GO:0019538;protein metabolic process;3.72256499313179e-44!GO:0010467;gene expression;3.77321841488045e-44!GO:0045184;establishment of protein localization;1.08339378304356e-43!GO:0008104;protein localization;5.12702131453403e-43!GO:0043228;non-membrane-bound organelle;7.10927713797056e-43!GO:0043232;intracellular non-membrane-bound organelle;7.10927713797056e-43!GO:0031967;organelle envelope;8.69912827477006e-43!GO:0031975;envelope;2.3334193485949e-42!GO:0016071;mRNA metabolic process;3.98168553701926e-42!GO:0044267;cellular protein metabolic process;2.14876065451306e-40!GO:0044260;cellular macromolecule metabolic process;4.48451510155146e-40!GO:0008380;RNA splicing;5.36949937692878e-39!GO:0046907;intracellular transport;1.01840300884717e-38!GO:0006996;organelle organization and biogenesis;1.4036083655254e-38!GO:0033279;ribosomal subunit;1.46682831703813e-38!GO:0009058;biosynthetic process;1.97624810639152e-37!GO:0005829;cytosol;4.11473372251477e-37!GO:0044249;cellular biosynthetic process;4.64516255320533e-37!GO:0009059;macromolecule biosynthetic process;6.54579060086025e-37!GO:0006259;DNA metabolic process;1.42972173724744e-36!GO:0006397;mRNA processing;1.93062071813852e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.76510658759917e-34!GO:0065003;macromolecular complex assembly;9.8139045943267e-33!GO:0006886;intracellular protein transport;1.56770031187673e-32!GO:0005654;nucleoplasm;3.37695496886925e-31!GO:0005740;mitochondrial envelope;2.39189714162669e-30!GO:0022607;cellular component assembly;3.66954661998887e-29!GO:0000166;nucleotide binding;7.79898040307899e-29!GO:0019866;organelle inner membrane;1.3483608805604e-28!GO:0031966;mitochondrial membrane;1.79858132273727e-28!GO:0007049;cell cycle;3.5057929523342e-28!GO:0051649;establishment of cellular localization;7.3258896686662e-28!GO:0051641;cellular localization;3.23692086600522e-27!GO:0005681;spliceosome;4.2532993050267e-27!GO:0005743;mitochondrial inner membrane;9.79853824385413e-27!GO:0044451;nucleoplasm part;2.68390138186091e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.52561886452914e-25!GO:0003676;nucleic acid binding;5.58988442574193e-25!GO:0006119;oxidative phosphorylation;2.11820985160045e-22!GO:0044445;cytosolic part;4.32658879597159e-22!GO:0016462;pyrophosphatase activity;9.27529064567099e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.63779311937603e-21!GO:0012505;endomembrane system;2.1983197557942e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.55731554320773e-21!GO:0031980;mitochondrial lumen;5.20800381222858e-21!GO:0005759;mitochondrial matrix;5.20800381222858e-21!GO:0044455;mitochondrial membrane part;6.04462789450365e-21!GO:0017111;nucleoside-triphosphatase activity;7.86519583720494e-21!GO:0005730;nucleolus;8.62836989385077e-21!GO:0015935;small ribosomal subunit;1.67008260467518e-20!GO:0000278;mitotic cell cycle;1.97888587338536e-20!GO:0005694;chromosome;2.26445898272344e-20!GO:0022402;cell cycle process;4.5872838617804e-20!GO:0016070;RNA metabolic process;5.74271801309042e-20!GO:0017076;purine nucleotide binding;7.03423112566556e-20!GO:0006974;response to DNA damage stimulus;1.23714908776107e-19!GO:0032553;ribonucleotide binding;1.99845802348236e-19!GO:0032555;purine ribonucleotide binding;1.99845802348236e-19!GO:0022618;protein-RNA complex assembly;2.80197046025599e-19!GO:0015934;large ribosomal subunit;3.76562950163699e-19!GO:0016874;ligase activity;3.82062205535232e-19!GO:0006457;protein folding;2.02306786100596e-18!GO:0044427;chromosomal part;2.5446677192684e-18!GO:0044265;cellular macromolecule catabolic process;2.57288110063182e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;5.80319010831852e-18!GO:0005761;mitochondrial ribosome;9.81654412974474e-18!GO:0000313;organellar ribosome;9.81654412974474e-18!GO:0006512;ubiquitin cycle;9.81654412974474e-18!GO:0019941;modification-dependent protein catabolic process;9.81654412974474e-18!GO:0043632;modification-dependent macromolecule catabolic process;9.81654412974474e-18!GO:0005524;ATP binding;1.28843929409205e-17!GO:0030554;adenyl nucleotide binding;1.38256857567386e-17!GO:0044257;cellular protein catabolic process;2.27339128745703e-17!GO:0000087;M phase of mitotic cell cycle;2.29264301442757e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.35601971084035e-17!GO:0032559;adenyl ribonucleotide binding;2.46569661491667e-17!GO:0008135;translation factor activity, nucleic acid binding;2.96088613438005e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.28072726639061e-17!GO:0006605;protein targeting;3.625527517749e-17!GO:0006281;DNA repair;3.625527517749e-17!GO:0043285;biopolymer catabolic process;3.94595920446334e-17!GO:0007067;mitosis;4.2424378278474e-17!GO:0005746;mitochondrial respiratory chain;6.17171645654277e-17!GO:0051301;cell division;1.42917714004752e-16!GO:0051276;chromosome organization and biogenesis;1.51651330438147e-16!GO:0022403;cell cycle phase;1.94795279267444e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.59300443912274e-16!GO:0003954;NADH dehydrogenase activity;3.59300443912274e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.59300443912274e-16!GO:0005783;endoplasmic reticulum;4.52011504737449e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.52336607708722e-16!GO:0009057;macromolecule catabolic process;1.0236542647873e-15!GO:0006260;DNA replication;1.156420130829e-15!GO:0042254;ribosome biogenesis and assembly;1.20989233931308e-15!GO:0048193;Golgi vesicle transport;2.29888714163315e-15!GO:0005794;Golgi apparatus;2.56012899105466e-15!GO:0030163;protein catabolic process;4.48696275597328e-15!GO:0044432;endoplasmic reticulum part;6.61780884643385e-15!GO:0008134;transcription factor binding;2.1748067358085e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.72616270017485e-14!GO:0000375;RNA splicing, via transesterification reactions;2.72616270017485e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.72616270017485e-14!GO:0000279;M phase;2.7931105132162e-14!GO:0043412;biopolymer modification;3.38579632541181e-14!GO:0016887;ATPase activity;4.46839951809032e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.74067406616319e-14!GO:0042773;ATP synthesis coupled electron transport;5.74067406616319e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.94269664047649e-14!GO:0045271;respiratory chain complex I;5.94269664047649e-14!GO:0005747;mitochondrial respiratory chain complex I;5.94269664047649e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.99825157022558e-14!GO:0051186;cofactor metabolic process;1.06497266710582e-13!GO:0009719;response to endogenous stimulus;1.12695130662773e-13!GO:0044248;cellular catabolic process;1.45627999570278e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.71478539746928e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.86908780290614e-13!GO:0042623;ATPase activity, coupled;2.70619029061023e-13!GO:0051082;unfolded protein binding;3.79587982611416e-13!GO:0005635;nuclear envelope;3.8092326298061e-13!GO:0006399;tRNA metabolic process;4.81136254597126e-13!GO:0006323;DNA packaging;7.46248279019201e-13!GO:0048770;pigment granule;8.06751102309226e-13!GO:0042470;melanosome;8.06751102309226e-13!GO:0016192;vesicle-mediated transport;8.27437783461023e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.57752869727521e-13!GO:0031965;nuclear membrane;1.14420575798825e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.36101673571321e-12!GO:0003743;translation initiation factor activity;1.47478910188504e-12!GO:0016604;nuclear body;1.64586942865981e-12!GO:0044453;nuclear membrane part;2.33028040695809e-12!GO:0006913;nucleocytoplasmic transport;3.55387668365625e-12!GO:0006464;protein modification process;3.8635647911111e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.54463644058915e-12!GO:0051169;nuclear transport;8.79102448272068e-12!GO:0006413;translational initiation;1.02004986152467e-11!GO:0004386;helicase activity;1.05004614350118e-11!GO:0005789;endoplasmic reticulum membrane;1.49188949030258e-11!GO:0008639;small protein conjugating enzyme activity;3.83405322767873e-11!GO:0006446;regulation of translational initiation;4.31005069624298e-11!GO:0000785;chromatin;8.71392203373597e-11!GO:0004842;ubiquitin-protein ligase activity;9.80585964896596e-11!GO:0043687;post-translational protein modification;1.04441593291941e-10!GO:0006364;rRNA processing;1.14534503249176e-10!GO:0006732;coenzyme metabolic process;1.27297643513988e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.56202567264205e-10!GO:0006163;purine nucleotide metabolic process;1.77443158618386e-10!GO:0051726;regulation of cell cycle;1.7980415588751e-10!GO:0006333;chromatin assembly or disassembly;2.10780992773215e-10!GO:0019787;small conjugating protein ligase activity;2.11476674268382e-10!GO:0005643;nuclear pore;2.34374038774766e-10!GO:0008565;protein transporter activity;2.98520650964196e-10!GO:0000074;regulation of progression through cell cycle;3.35316894029195e-10!GO:0016072;rRNA metabolic process;3.64757730868765e-10!GO:0009259;ribonucleotide metabolic process;3.69643311675503e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.88955851054454e-10!GO:0008026;ATP-dependent helicase activity;5.7906992885677e-10!GO:0017038;protein import;6.64193060283323e-10!GO:0016607;nuclear speck;7.42023930937178e-10!GO:0005793;ER-Golgi intermediate compartment;8.59799602921198e-10!GO:0009055;electron carrier activity;9.55578052372094e-10!GO:0006164;purine nucleotide biosynthetic process;1.29796315356183e-09!GO:0065004;protein-DNA complex assembly;1.31954985201797e-09!GO:0065002;intracellular protein transport across a membrane;1.57573848131452e-09!GO:0050657;nucleic acid transport;1.61564844293422e-09!GO:0051236;establishment of RNA localization;1.61564844293422e-09!GO:0050658;RNA transport;1.61564844293422e-09!GO:0006403;RNA localization;2.29288862520753e-09!GO:0009150;purine ribonucleotide metabolic process;2.36460012240766e-09!GO:0003712;transcription cofactor activity;2.40027050037798e-09!GO:0016881;acid-amino acid ligase activity;2.850931678366e-09!GO:0006366;transcription from RNA polymerase II promoter;2.8566298334401e-09!GO:0009141;nucleoside triphosphate metabolic process;3.09973816551002e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.19793269928655e-09!GO:0016779;nucleotidyltransferase activity;5.28577339884184e-09!GO:0009260;ribonucleotide biosynthetic process;5.36518746397356e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.80354667152644e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.44219300310104e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.68363526493892e-09!GO:0004812;aminoacyl-tRNA ligase activity;7.68363526493892e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.68363526493892e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.1579636345501e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.1579636345501e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.26527084680954e-08!GO:0006461;protein complex assembly;1.3069545503217e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.69617683086629e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.69617683086629e-08!GO:0009060;aerobic respiration;1.79236255202067e-08!GO:0015630;microtubule cytoskeleton;1.91995698295481e-08!GO:0043038;amino acid activation;1.96280639637378e-08!GO:0006418;tRNA aminoacylation for protein translation;1.96280639637378e-08!GO:0043039;tRNA aminoacylation;1.96280639637378e-08!GO:0012501;programmed cell death;2.39527062076837e-08!GO:0006915;apoptosis;2.65212096491428e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.91066726925196e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.91066726925196e-08!GO:0019829;cation-transporting ATPase activity;3.05544424123343e-08!GO:0016740;transferase activity;3.74773970764533e-08!GO:0046930;pore complex;4.34559029556136e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.3541317082216e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.97762967506517e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.97762967506517e-08!GO:0015986;ATP synthesis coupled proton transport;6.50538698721721e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.50538698721721e-08!GO:0006334;nucleosome assembly;7.31429079262537e-08!GO:0000775;chromosome, pericentric region;7.51746565829471e-08!GO:0051028;mRNA transport;8.05377107326149e-08!GO:0051188;cofactor biosynthetic process;1.01907475643884e-07!GO:0009056;catabolic process;1.05925473746571e-07!GO:0007005;mitochondrion organization and biogenesis;1.0626386615942e-07!GO:0043623;cellular protein complex assembly;1.16062420997255e-07!GO:0016568;chromatin modification;1.16462037338213e-07!GO:0045333;cellular respiration;1.18852412213649e-07!GO:0009117;nucleotide metabolic process;1.36061978195664e-07!GO:0044431;Golgi apparatus part;1.59952763734838e-07!GO:0031497;chromatin assembly;1.79285132053693e-07!GO:0046034;ATP metabolic process;2.13562072801283e-07!GO:0000245;spliceosome assembly;2.13562072801283e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.39199723485608e-07!GO:0032446;protein modification by small protein conjugation;2.92854309821521e-07!GO:0005768;endosome;3.25336058861354e-07!GO:0016567;protein ubiquitination;3.38620786167846e-07!GO:0006099;tricarboxylic acid cycle;3.68197257449324e-07!GO:0046356;acetyl-CoA catabolic process;3.68197257449324e-07!GO:0008219;cell death;3.93390910478754e-07!GO:0016265;death;3.93390910478754e-07!GO:0050794;regulation of cellular process;5.40513635113863e-07!GO:0005819;spindle;5.62295036345242e-07!GO:0007051;spindle organization and biogenesis;6.20549944259161e-07!GO:0030120;vesicle coat;6.8957456899495e-07!GO:0030662;coated vesicle membrane;6.8957456899495e-07!GO:0051170;nuclear import;7.22872367581727e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.60840292749836e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.84029651011128e-07!GO:0003899;DNA-directed RNA polymerase activity;8.48309404536518e-07!GO:0006084;acetyl-CoA metabolic process;8.48309404536518e-07!GO:0051246;regulation of protein metabolic process;8.54293625881831e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.58508574714804e-07!GO:0000075;cell cycle checkpoint;9.3811807083171e-07!GO:0045259;proton-transporting ATP synthase complex;1.01441374093142e-06!GO:0006754;ATP biosynthetic process;1.02459091450558e-06!GO:0006753;nucleoside phosphate metabolic process;1.02459091450558e-06!GO:0006261;DNA-dependent DNA replication;1.59029559298731e-06!GO:0006606;protein import into nucleus;1.68823413050517e-06!GO:0005667;transcription factor complex;1.9224182367723e-06!GO:0005762;mitochondrial large ribosomal subunit;1.92653996545561e-06!GO:0000315;organellar large ribosomal subunit;1.92653996545561e-06!GO:0006793;phosphorus metabolic process;2.08407454358975e-06!GO:0006796;phosphate metabolic process;2.08407454358975e-06!GO:0000314;organellar small ribosomal subunit;2.1988646007175e-06!GO:0005763;mitochondrial small ribosomal subunit;2.1988646007175e-06!GO:0048475;coated membrane;2.31953011430274e-06!GO:0030117;membrane coat;2.31953011430274e-06!GO:0005657;replication fork;2.35837812246619e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.54699730537147e-06!GO:0043566;structure-specific DNA binding;2.83619732284247e-06!GO:0006613;cotranslational protein targeting to membrane;3.56482861240927e-06!GO:0031324;negative regulation of cellular metabolic process;3.82516841653438e-06!GO:0000151;ubiquitin ligase complex;4.41767385102732e-06!GO:0016310;phosphorylation;4.70933089826001e-06!GO:0009108;coenzyme biosynthetic process;4.74314104213552e-06!GO:0003697;single-stranded DNA binding;4.76967530762956e-06!GO:0009109;coenzyme catabolic process;5.91633918553293e-06!GO:0007010;cytoskeleton organization and biogenesis;6.39075811430881e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.80943497253284e-06!GO:0008094;DNA-dependent ATPase activity;8.04441329855907e-06!GO:0005813;centrosome;9.01616516197135e-06!GO:0000139;Golgi membrane;9.83477249437226e-06!GO:0003724;RNA helicase activity;1.07489403193483e-05!GO:0051329;interphase of mitotic cell cycle;1.15950962097197e-05!GO:0008033;tRNA processing;1.345766744771e-05!GO:0003713;transcription coactivator activity;1.37154492410033e-05!GO:0051187;cofactor catabolic process;1.4614913267133e-05!GO:0016564;transcription repressor activity;1.51966652102192e-05!GO:0009892;negative regulation of metabolic process;1.57501027936985e-05!GO:0016787;hydrolase activity;1.58358940136932e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.58841882666194e-05!GO:0048523;negative regulation of cellular process;1.71997426453407e-05!GO:0005815;microtubule organizing center;2.01992675679284e-05!GO:0008654;phospholipid biosynthetic process;2.07462749498988e-05!GO:0051427;hormone receptor binding;2.3764378671164e-05!GO:0051325;interphase;2.40555450773169e-05!GO:0043021;ribonucleoprotein binding;2.90238981775465e-05!GO:0044440;endosomal part;3.05295298284273e-05!GO:0010008;endosome membrane;3.05295298284273e-05!GO:0016563;transcription activator activity;3.25410429554169e-05!GO:0016853;isomerase activity;3.34965938427255e-05!GO:0016363;nuclear matrix;3.35484473820656e-05!GO:0004298;threonine endopeptidase activity;3.37003578668172e-05!GO:0044452;nucleolar part;3.9620614957321e-05!GO:0006752;group transfer coenzyme metabolic process;4.15216211574749e-05!GO:0048471;perinuclear region of cytoplasm;5.31668440277181e-05!GO:0035257;nuclear hormone receptor binding;5.42183103532617e-05!GO:0003924;GTPase activity;5.43740412526552e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.73362265950428e-05!GO:0016491;oxidoreductase activity;6.15737536708016e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.24133597644589e-05!GO:0030867;rough endoplasmic reticulum membrane;6.32939589329304e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.55408321014277e-05!GO:0005770;late endosome;6.61173301119202e-05!GO:0005798;Golgi-associated vesicle;6.96883513724132e-05!GO:0006626;protein targeting to mitochondrion;7.107971904429e-05!GO:0003682;chromatin binding;7.36852793676456e-05!GO:0007088;regulation of mitosis;7.36852793676456e-05!GO:0000776;kinetochore;7.97327884616619e-05!GO:0006302;double-strand break repair;9.41227180237377e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000104907393535614!GO:0042981;regulation of apoptosis;0.000105508580797879!GO:0043681;protein import into mitochondrion;0.000108200914617766!GO:0051168;nuclear export;0.000118859918592268!GO:0030880;RNA polymerase complex;0.000131631144465042!GO:0043067;regulation of programmed cell death;0.000133159214242381!GO:0031968;organelle outer membrane;0.000134341240062545!GO:0042802;identical protein binding;0.000134422429637343!GO:0050789;regulation of biological process;0.000139485045743954!GO:0006612;protein targeting to membrane;0.000139595993221232!GO:0019899;enzyme binding;0.000148959481441452!GO:0045045;secretory pathway;0.000163036301633423!GO:0005788;endoplasmic reticulum lumen;0.000182294287402027!GO:0007093;mitotic cell cycle checkpoint;0.000189868628464348!GO:0048519;negative regulation of biological process;0.000205567056817316!GO:0019867;outer membrane;0.000207722937786426!GO:0045786;negative regulation of progression through cell cycle;0.000213078727577215!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000217002524872906!GO:0016023;cytoplasmic membrane-bound vesicle;0.000220076822359625!GO:0031988;membrane-bound vesicle;0.000223519282972432!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000224436610187402!GO:0050662;coenzyme binding;0.000227629430115609!GO:0031252;leading edge;0.00025039680592845!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000268191221005041!GO:0005525;GTP binding;0.000271947923874038!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000307173347965415!GO:0000428;DNA-directed RNA polymerase complex;0.000307173347965415!GO:0006383;transcription from RNA polymerase III promoter;0.000319864713161348!GO:0019222;regulation of metabolic process;0.000321427305269029!GO:0006414;translational elongation;0.000359141342793452!GO:0030036;actin cytoskeleton organization and biogenesis;0.000365767887958809!GO:0003714;transcription corepressor activity;0.00037805215180845!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000385959101744568!GO:0006091;generation of precursor metabolites and energy;0.000392276367919466!GO:0003678;DNA helicase activity;0.000395538627948081!GO:0007059;chromosome segregation;0.000396795621332602!GO:0005048;signal sequence binding;0.000406511639896981!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000424482780696021!GO:0005741;mitochondrial outer membrane;0.000428982244543451!GO:0045454;cell redox homeostasis;0.000435539441478209!GO:0008186;RNA-dependent ATPase activity;0.000471473339609492!GO:0003729;mRNA binding;0.000508228243336265!GO:0033116;ER-Golgi intermediate compartment membrane;0.00054324284734376!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000556455819640464!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000579149134426087!GO:0009116;nucleoside metabolic process;0.000588993046993061!GO:0015980;energy derivation by oxidation of organic compounds;0.00060248150187277!GO:0051920;peroxiredoxin activity;0.000616009232192536!GO:0000786;nucleosome;0.000627251293980225!GO:0051252;regulation of RNA metabolic process;0.000633474881851507!GO:0006916;anti-apoptosis;0.000678846236037744!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000684493655240975!GO:0016481;negative regulation of transcription;0.000688650297962939!GO:0003690;double-stranded DNA binding;0.000688876589635421!GO:0048500;signal recognition particle;0.000689682856847999!GO:0000059;protein import into nucleus, docking;0.000690613658423381!GO:0008250;oligosaccharyl transferase complex;0.000704936266590991!GO:0016859;cis-trans isomerase activity;0.000730316098660189!GO:0003684;damaged DNA binding;0.000731423800894247!GO:0005874;microtubule;0.000731423800894247!GO:0031982;vesicle;0.000749983387973266!GO:0005885;Arp2/3 protein complex;0.000753182257139998!GO:0009165;nucleotide biosynthetic process;0.000757995230319723!GO:0007017;microtubule-based process;0.000857103105976039!GO:0046489;phosphoinositide biosynthetic process;0.000889857570970503!GO:0031410;cytoplasmic vesicle;0.000906948898409148!GO:0046474;glycerophospholipid biosynthetic process;0.000907802749887891!GO:0006839;mitochondrial transport;0.000943230275820388!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000966693909118014!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000998450594718664!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00101178377589708!GO:0032508;DNA duplex unwinding;0.00106699548077931!GO:0032392;DNA geometric change;0.00106699548077931!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00110867750045367!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00110867750045367!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00110867750045367!GO:0051287;NAD binding;0.00112222049293983!GO:0007052;mitotic spindle organization and biogenesis;0.00112492214937349!GO:0005769;early endosome;0.00115205452547052!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00118855986711268!GO:0004004;ATP-dependent RNA helicase activity;0.00121253630093932!GO:0006402;mRNA catabolic process;0.00122569103472439!GO:0033673;negative regulation of kinase activity;0.00123822086771881!GO:0006469;negative regulation of protein kinase activity;0.00123822086771881!GO:0004576;oligosaccharyl transferase activity;0.00127289876637451!GO:0032561;guanyl ribonucleotide binding;0.00140639810251311!GO:0019001;guanyl nucleotide binding;0.00140639810251311!GO:0051789;response to protein stimulus;0.00142476062200662!GO:0006986;response to unfolded protein;0.00142476062200662!GO:0030658;transport vesicle membrane;0.00146030545720074!GO:0005684;U2-dependent spliceosome;0.00176618801876395!GO:0006401;RNA catabolic process;0.00176618801876395!GO:0008168;methyltransferase activity;0.00181751658716201!GO:0003746;translation elongation factor activity;0.00183721287383554!GO:0016741;transferase activity, transferring one-carbon groups;0.00183973557628561!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0018998787827349!GO:0015399;primary active transmembrane transporter activity;0.0018998787827349!GO:0030118;clathrin coat;0.00191859066420532!GO:0030029;actin filament-based process;0.00193280078060339!GO:0031072;heat shock protein binding;0.00195290611860243!GO:0006891;intra-Golgi vesicle-mediated transport;0.00197677035854005!GO:0004674;protein serine/threonine kinase activity;0.00202658968593884!GO:0003711;transcription elongation regulator activity;0.00204895761211996!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00204903527421114!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00204903527421114!GO:0051348;negative regulation of transferase activity;0.002104282641863!GO:0008312;7S RNA binding;0.00218586011192992!GO:0016126;sterol biosynthetic process;0.00221824917982599!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00222702209218218!GO:0045047;protein targeting to ER;0.00222702209218218!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0022754901076031!GO:0005773;vacuole;0.0022832537616885!GO:0016272;prefoldin complex;0.00242388423847448!GO:0030133;transport vesicle;0.00250446984930921!GO:0007006;mitochondrial membrane organization and biogenesis;0.00255144340080181!GO:0005791;rough endoplasmic reticulum;0.00255972462353855!GO:0005905;coated pit;0.00266860315950385!GO:0008139;nuclear localization sequence binding;0.00268849659260062!GO:0009112;nucleobase metabolic process;0.00271873576743784!GO:0006338;chromatin remodeling;0.00272265230315326!GO:0030119;AP-type membrane coat adaptor complex;0.002806825848733!GO:0008022;protein C-terminus binding;0.00292289517732618!GO:0015992;proton transport;0.00293141725203381!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.003060177652301!GO:0006818;hydrogen transport;0.0030710241080895!GO:0018196;peptidyl-asparagine modification;0.0030710241080895!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0030710241080895!GO:0030660;Golgi-associated vesicle membrane;0.00311493310834867!GO:0051052;regulation of DNA metabolic process;0.0031515711331838!GO:0043069;negative regulation of programmed cell death;0.00328764328102426!GO:0006310;DNA recombination;0.00328764328102426!GO:0016044;membrane organization and biogenesis;0.00332042942993175!GO:0008092;cytoskeletal protein binding;0.00332393963613706!GO:0006268;DNA unwinding during replication;0.00332393963613706!GO:0030132;clathrin coat of coated pit;0.00343192697837405!GO:0030131;clathrin adaptor complex;0.00352759366998392!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00360813432666331!GO:0032940;secretion by cell;0.00362382929945271!GO:0006595;polyamine metabolic process;0.00384525910200563!GO:0065009;regulation of a molecular function;0.00386666307922148!GO:0051087;chaperone binding;0.00387197182558201!GO:0000910;cytokinesis;0.00398455052204762!GO:0043596;nuclear replication fork;0.00398455052204762!GO:0004860;protein kinase inhibitor activity;0.00404312148751425!GO:0005876;spindle microtubule;0.00407662336289758!GO:0005758;mitochondrial intermembrane space;0.00419178505769384!GO:0000323;lytic vacuole;0.00431961253133461!GO:0005764;lysosome;0.00431961253133461!GO:0016251;general RNA polymerase II transcription factor activity;0.00433037540269737!GO:0007243;protein kinase cascade;0.00447247733561397!GO:0051540;metal cluster binding;0.00451346083746579!GO:0051536;iron-sulfur cluster binding;0.00451346083746579!GO:0031124;mRNA 3'-end processing;0.00482074805287344!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00482074805287344!GO:0006144;purine base metabolic process;0.00483829598224631!GO:0000082;G1/S transition of mitotic cell cycle;0.00484295805124722!GO:0043066;negative regulation of apoptosis;0.00490526132517152!GO:0048037;cofactor binding;0.00494903984415922!GO:0030176;integral to endoplasmic reticulum membrane;0.00495800635782536!GO:0006352;transcription initiation;0.00517658381296044!GO:0051338;regulation of transferase activity;0.00526408490275454!GO:0006650;glycerophospholipid metabolic process;0.00529115314750823!GO:0000792;heterochromatin;0.00532544251740919!GO:0009119;ribonucleoside metabolic process;0.00533075648194476!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00542340299096765!GO:0006611;protein export from nucleus;0.00550040817034903!GO:0030134;ER to Golgi transport vesicle;0.00569677715389922!GO:0006695;cholesterol biosynthetic process;0.00574396622570596!GO:0043488;regulation of mRNA stability;0.00585593644412907!GO:0043487;regulation of RNA stability;0.00585593644412907!GO:0000049;tRNA binding;0.00595519702218766!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00600121238032312!GO:0006378;mRNA polyadenylation;0.00638761320306374!GO:0016584;nucleosome positioning;0.0063968348996448!GO:0007264;small GTPase mediated signal transduction;0.00724128900192311!GO:0030127;COPII vesicle coat;0.00732554123402383!GO:0012507;ER to Golgi transport vesicle membrane;0.00732554123402383!GO:0006607;NLS-bearing substrate import into nucleus;0.00752355289308698!GO:0046966;thyroid hormone receptor binding;0.00756277954706428!GO:0043549;regulation of kinase activity;0.00768853671880082!GO:0009451;RNA modification;0.00774138134701164!GO:0016197;endosome transport;0.00792676795095694!GO:0016408;C-acyltransferase activity;0.00815246446542001!GO:0030384;phosphoinositide metabolic process;0.00817395106218673!GO:0046467;membrane lipid biosynthetic process;0.00817395106218673!GO:0005637;nuclear inner membrane;0.00817549632730177!GO:0000922;spindle pole;0.00847093254401175!GO:0006892;post-Golgi vesicle-mediated transport;0.00875076652616344!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00886856973361578!GO:0015002;heme-copper terminal oxidase activity;0.00886856973361578!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00886856973361578!GO:0004129;cytochrome-c oxidase activity;0.00886856973361578!GO:0031902;late endosome membrane;0.00901139609685543!GO:0008180;signalosome;0.00927630454247952!GO:0030521;androgen receptor signaling pathway;0.00951425001299549!GO:0043022;ribosome binding;0.00952336941951273!GO:0031970;organelle envelope lumen;0.00969906802278387!GO:0006506;GPI anchor biosynthetic process;0.00988005634654331!GO:0015631;tubulin binding;0.0099526929146904!GO:0051539;4 iron, 4 sulfur cluster binding;0.0104941207113902!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0105384267263791!GO:0035258;steroid hormone receptor binding;0.0105558877408093!GO:0006497;protein amino acid lipidation;0.0107540248801659!GO:0043492;ATPase activity, coupled to movement of substances;0.0109141304080607!GO:0006950;response to stress;0.0109723788149171!GO:0006400;tRNA modification;0.011110909871822!GO:0008361;regulation of cell size;0.0111448773228085!GO:0031625;ubiquitin protein ligase binding;0.0116705457711796!GO:0048522;positive regulation of cellular process;0.0116865828007481!GO:0031323;regulation of cellular metabolic process;0.0116919026665061!GO:0030663;COPI coated vesicle membrane;0.0117951872313669!GO:0030126;COPI vesicle coat;0.0117951872313669!GO:0007050;cell cycle arrest;0.0119301804010813!GO:0016049;cell growth;0.0120510794544127!GO:0022890;inorganic cation transmembrane transporter activity;0.0125553090392123!GO:0005832;chaperonin-containing T-complex;0.0127168057753685!GO:0006505;GPI anchor metabolic process;0.0129332310046437!GO:0045859;regulation of protein kinase activity;0.0129661557665403!GO:0006405;RNA export from nucleus;0.013013589276081!GO:0042393;histone binding;0.0130503165455241!GO:0030125;clathrin vesicle coat;0.0135151756002288!GO:0030665;clathrin coated vesicle membrane;0.0135151756002288!GO:0022406;membrane docking;0.0135151756002288!GO:0048278;vesicle docking;0.0135151756002288!GO:0043601;nuclear replisome;0.0142034438521041!GO:0030894;replisome;0.0142034438521041!GO:0003702;RNA polymerase II transcription factor activity;0.0143887363102988!GO:0046128;purine ribonucleoside metabolic process;0.0144276259161068!GO:0042278;purine nucleoside metabolic process;0.0144276259161068!GO:0008632;apoptotic program;0.0144276259161068!GO:0001558;regulation of cell growth;0.0145020451070868!GO:0046483;heterocycle metabolic process;0.0146450710127581!GO:0004527;exonuclease activity;0.0146450710127581!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0151237288066905!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0151746234140232!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0158960448074924!GO:0048487;beta-tubulin binding;0.0162651326068247!GO:0006354;RNA elongation;0.0163023864910968!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0167610679382586!GO:0005938;cell cortex;0.0168611796014965!GO:0006509;membrane protein ectodomain proteolysis;0.0170592608033549!GO:0033619;membrane protein proteolysis;0.0170592608033549!GO:0000725;recombinational repair;0.0173456744708011!GO:0000724;double-strand break repair via homologous recombination;0.0173456744708011!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0175126203991442!GO:0031123;RNA 3'-end processing;0.0175333514668273!GO:0001726;ruffle;0.0180171964058664!GO:0006284;base-excision repair;0.0183331838241213!GO:0043154;negative regulation of caspase activity;0.0184141938022618!GO:0030027;lamellipodium;0.0191776904666205!GO:0000118;histone deacetylase complex;0.0195261458447665!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0196221932077873!GO:0006275;regulation of DNA replication;0.0196221932077873!GO:0000228;nuclear chromosome;0.0198237381152433!GO:0000070;mitotic sister chromatid segregation;0.0198482427525996!GO:0008637;apoptotic mitochondrial changes;0.0199158950527809!GO:0051128;regulation of cellular component organization and biogenesis;0.0202350593772788!GO:0019210;kinase inhibitor activity;0.0202823092344524!GO:0000819;sister chromatid segregation;0.0207786989789897!GO:0030137;COPI-coated vesicle;0.0207786989789897!GO:0000152;nuclear ubiquitin ligase complex;0.0209843934314083!GO:0006376;mRNA splice site selection;0.0210065480345202!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0210065480345202!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0210497875980519!GO:0006417;regulation of translation;0.0210497875980519!GO:0004003;ATP-dependent DNA helicase activity;0.0210531917789738!GO:0019887;protein kinase regulator activity;0.0212508321427382!GO:0004177;aminopeptidase activity;0.0212847553411179!GO:0016301;kinase activity;0.0213893087809974!GO:0017166;vinculin binding;0.0216501085277017!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0227046280439374!GO:0042026;protein refolding;0.0227680610529775!GO:0019843;rRNA binding;0.0227682843573952!GO:0000209;protein polyubiquitination;0.0228236691903234!GO:0000287;magnesium ion binding;0.0230703893539985!GO:0043189;H4/H2A histone acetyltransferase complex;0.0232944487830383!GO:0031577;spindle checkpoint;0.0234559291451845!GO:0022415;viral reproductive process;0.0236710490483772!GO:0045892;negative regulation of transcription, DNA-dependent;0.0236710490483772!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0236710490483772!GO:0031529;ruffle organization and biogenesis;0.0239350983617502!GO:0030659;cytoplasmic vesicle membrane;0.0241578994878993!GO:0006904;vesicle docking during exocytosis;0.024821520638896!GO:0005869;dynactin complex;0.0249583332781665!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0253036051312937!GO:0045039;protein import into mitochondrial inner membrane;0.0253036051312937!GO:0019206;nucleoside kinase activity;0.0253661197673376!GO:0009303;rRNA transcription;0.0255848498018027!GO:0042158;lipoprotein biosynthetic process;0.0256119962134608!GO:0008610;lipid biosynthetic process;0.0261068633816763!GO:0031570;DNA integrity checkpoint;0.0267247096423617!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0270310139351417!GO:0005669;transcription factor TFIID complex;0.0272078856063455!GO:0008017;microtubule binding;0.0283114323968399!GO:0007021;tubulin folding;0.0283319718587848!GO:0008538;proteasome activator activity;0.0289749077283968!GO:0051098;regulation of binding;0.0291153456870118!GO:0008234;cysteine-type peptidase activity;0.02946432273082!GO:0007034;vacuolar transport;0.0294823136301028!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0294873843765203!GO:0050790;regulation of catalytic activity;0.0294873843765203!GO:0045941;positive regulation of transcription;0.0294873843765203!GO:0004518;nuclease activity;0.0303380663626537!GO:0000339;RNA cap binding;0.0303806545462614!GO:0006350;transcription;0.0310447021316137!GO:0051101;regulation of DNA binding;0.0316888500324333!GO:0005666;DNA-directed RNA polymerase III complex;0.0322365920609577!GO:0031371;ubiquitin conjugating enzyme complex;0.033269674067839!GO:0065007;biological regulation;0.0333163888352847!GO:0016585;chromatin remodeling complex;0.0338715302769999!GO:0019783;small conjugating protein-specific protease activity;0.0343752089616057!GO:0045893;positive regulation of transcription, DNA-dependent;0.0347507661534389!GO:0000096;sulfur amino acid metabolic process;0.0350352380901384!GO:0005784;translocon complex;0.0350352380901384!GO:0006007;glucose catabolic process;0.0350352380901384!GO:0045936;negative regulation of phosphate metabolic process;0.0350352380901384!GO:0000086;G2/M transition of mitotic cell cycle;0.0350352380901384!GO:0006779;porphyrin biosynthetic process;0.0350352380901384!GO:0033014;tetrapyrrole biosynthetic process;0.0350352380901384!GO:0006740;NADPH regeneration;0.0350352380901384!GO:0006098;pentose-phosphate shunt;0.0350352380901384!GO:0019207;kinase regulator activity;0.0351402727383271!GO:0016407;acetyltransferase activity;0.0351402727383271!GO:0035267;NuA4 histone acetyltransferase complex;0.0359757313756007!GO:0030433;ER-associated protein catabolic process;0.0359757313756007!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0359757313756007!GO:0044433;cytoplasmic vesicle part;0.0364383077368466!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0365665753192251!GO:0043631;RNA polyadenylation;0.0366226088543053!GO:0032906;transforming growth factor-beta2 production;0.0370966191008209!GO:0032909;regulation of transforming growth factor-beta2 production;0.0370966191008209!GO:0044262;cellular carbohydrate metabolic process;0.0373069824576937!GO:0042769;DNA damage response, detection of DNA damage;0.0380301016917432!GO:0043284;biopolymer biosynthetic process;0.0380453512202797!GO:0006220;pyrimidine nucleotide metabolic process;0.0382824798478793!GO:0006213;pyrimidine nucleoside metabolic process;0.0382824798478793!GO:0006270;DNA replication initiation;0.0384275620044817!GO:0030911;TPR domain binding;0.0392013053467983!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0400743468862675!GO:0015036;disulfide oxidoreductase activity;0.0400841765044503!GO:0006984;ER-nuclear signaling pathway;0.0403648785574988!GO:0005680;anaphase-promoting complex;0.0410483350797107!GO:0040029;regulation of gene expression, epigenetic;0.0414690609192571!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0419111025245198!GO:0051059;NF-kappaB binding;0.0427217042866413!GO:0006778;porphyrin metabolic process;0.0428015193613794!GO:0033013;tetrapyrrole metabolic process;0.0428015193613794!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0428853547904936!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0436281226396251!GO:0010257;NADH dehydrogenase complex assembly;0.0436281226396251!GO:0033108;mitochondrial respiratory chain complex assembly;0.0436281226396251!GO:0030508;thiol-disulfide exchange intermediate activity;0.04372972345598!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0441384905512281!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0441384905512281!GO:0004448;isocitrate dehydrogenase activity;0.0449515805929677!GO:0016790;thiolester hydrolase activity;0.0452197414008541!GO:0004843;ubiquitin-specific protease activity;0.0453184725799056!GO:0000726;non-recombinational repair;0.0453454224517416!GO:0006596;polyamine biosynthetic process;0.0455549150527591!GO:0004523;ribonuclease H activity;0.0456802618748889!GO:0006289;nucleotide-excision repair;0.0460635672512243!GO:0005047;signal recognition particle binding;0.0465356184709019!GO:0051656;establishment of organelle localization;0.0477415369513049!GO:0004532;exoribonuclease activity;0.0479361838999122!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0479361838999122!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0481539547691539!GO:0043407;negative regulation of MAP kinase activity;0.0482519542440759!GO:0000077;DNA damage checkpoint;0.0488204316627334!GO:0005802;trans-Golgi network;0.0489274681736106!GO:0008426;protein kinase C inhibitor activity;0.0495562578646918
|sample_id=10439
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=prostate
|top_motifs=FOX{I1,J2}:2.19862116731;ONECUT1,2:1.64954435986;CDC5L:1.54442457324;NKX6-1,2:1.501202115;FOXD3:1.49705176531;PITX1..3:1.49677328809;PDX1:1.41029548334;PAX8:1.35921085829;ZEB1:1.25153667021;FOXQ1:1.23317174646;SNAI1..3:1.2305930035;T:1.14881236995;ZBTB16:1.11421396659;LMO2:1.09166550004;HOX{A6,A7,B6,B7}:1.05513024148;TEF:0.962208803042;IKZF2:0.954633903925;NFY{A,B,C}:0.918391687046;E2F1..5:0.895845426155;ADNP_IRX_SIX_ZHX:0.891510666628;bHLH_family:0.832610186537;NKX2-1,4:0.821921486913;ZNF143:0.820280045876;SP1:0.802553698246;ARID5B:0.786218853326;POU3F1..4:0.761647868862;FOXP1:0.760217651512;NRF1:0.754203094674;AIRE:0.739494619379;HBP1_HMGB_SSRP1_UBTF:0.737679253901;POU1F1:0.718136064699;NKX2-3_NKX2-5:0.694905077589;FOXL1:0.669200258587;ZNF148:0.638150357738;ALX1:0.637412687858;FOXO1,3,4:0.589749758756;DBP:0.589267300739;CRX:0.569354956833;MYOD1:0.564374374714;LHX3,4:0.563406773544;TFDP1:0.5492963144;MYB:0.531767129139;NR6A1:0.50752431257;ELK1,4_GABP{A,B1}:0.497119555665;TEAD1:0.492107298438;HMGA1,2:0.47686634784;XBP1:0.468562030729;AHR_ARNT_ARNT2:0.432681355096;FOX{F1,F2,J1}:0.425345564297;VSX1,2:0.386315609472;FOS_FOS{B,L1}_JUN{B,D}:0.386140290626;POU6F1:0.353958976863;PATZ1:0.332810193634;GFI1:0.296919524887;HOX{A4,D4}:0.250365932068;PAX3,7:0.248851801736;RBPJ:0.226996993759;HIC1:0.226239358579;NR1H4:0.22011924665;POU5F1:0.185963983848;FOXN1:0.182375921006;ZBTB6:0.181131757008;ZNF384:0.180226455394;BACH2:0.178922502996;ALX4:0.155585988495;HSF1,2:0.129616559375;TOPORS:0.123815574144;FOXA2:0.122898898517;GATA4:0.113971056228;HOXA9_MEIS1:0.112642180693;PAX1,9:0.105604023191;SOX2:0.0988913892895;XCPE1{core}:0.0920802270717;SPZ1:0.0796814968219;FOX{D1,D2}:0.0779795616335;SOX{8,9,10}:0.0778838812443;MYBL2:0.0722637406344;HNF1A:0.0706995704736;ESRRA:0.0658479572895;MED-1{core}:0.0489462117563;MAZ:0.041774349363;SOX17:0.0249666104279;POU2F1..3:0.0245494627353;NR5A1,2:0.0140372268972;LEF1_TCF7_TCF7L1,2:-0.0130419621552;GFI1B:-0.0181447745749;ELF1,2,4:-0.0199095015298;BREu{core}:-0.0237612198484;OCT4_SOX2{dimer}:-0.0292253332309;HOX{A5,B5}:-0.0381147222068;TBP:-0.0426297343468;RFX1:-0.0575290544741;PRDM1:-0.0625631896448;TFAP2B:-0.0666093868275;TBX4,5:-0.0703409916083;IKZF1:-0.0917858477707;FOSL2:-0.0980728142274;EVI1:-0.102200823391;DMAP1_NCOR{1,2}_SMARC:-0.102503160788;HIF1A:-0.105262807846;HNF4A_NR2F1,2:-0.128030265297;NKX3-1:-0.128819351337;NFE2:-0.161178705948;NFIX:-0.161712771643;EN1,2:-0.170248979281;FOXM1:-0.174946156173;TLX1..3_NFIC{dimer}:-0.19061325443;GZF1:-0.193297148527;YY1:-0.209290498322;TP53:-0.218571457341;TLX2:-0.241668640128;MEF2{A,B,C,D}:-0.255165405739;UFEwm:-0.258998775733;PPARG:-0.262299492142;STAT5{A,B}:-0.267276067062;EP300:-0.272163818714;ZNF423:-0.274671312557;PAX4:-0.278250204083;NFE2L2:-0.28208832739;CDX1,2,4:-0.293409490074;NHLH1,2:-0.306014588506;GATA6:-0.318761436111;NKX2-2,8:-0.323639574413;SPIB:-0.329002678389;REST:-0.331371840984;ZFP161:-0.350866756017;RREB1:-0.367023448368;ATF6:-0.369405150483;KLF4:-0.377928072338;ATF5_CREB3:-0.389688819221;CEBPA,B_DDIT3:-0.392450806116;HES1:-0.402592851866;BPTF:-0.40957999297;NFIL3:-0.416106803671;ATF2:-0.416819670372;IRF1,2:-0.417830534167;IRF7:-0.421363775675;PRRX1,2:-0.422600791627;NFKB1_REL_RELA:-0.432805440904;NKX3-2:-0.448443630523;TFCP2:-0.45945439896;MTF1:-0.469715163785;EGR1..3:-0.471731704714;PBX1:-0.483656946951;TFAP2{A,C}:-0.490644451084;STAT2,4,6:-0.503066884674;GTF2A1,2:-0.505399213956;CUX2:-0.506191859102;MZF1:-0.511370965159;GTF2I:-0.514898142731;GLI1..3:-0.521032045388;TGIF1:-0.531843463906;RUNX1..3:-0.542985325419;ESR1:-0.558883536329;SRF:-0.572129674911;HLF:-0.610884164333;PAX5:-0.612054436502;SOX5:-0.634509372842;NANOG:-0.641918530057;MTE{core}:-0.643243298652;SPI1:-0.650899692562;RFX2..5_RFXANK_RFXAP:-0.654196528464;ETS1,2:-0.670153103126;RORA:-0.677925886819;PAX6:-0.679353888992;NFATC1..3:-0.704512995005;TAL1_TCF{3,4,12}:-0.72150349503;RXRA_VDR{dimer}:-0.725933696483;ZIC1..3:-0.791347731059;HAND1,2:-0.797361050332;NFE2L1:-0.837050562597;ATF4:-0.859253135144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.877899816945;EBF1:-0.878675902375;RXR{A,B,G}:-0.905921961048;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.911238031158;JUN:-0.929743693022;STAT1,3:-0.957956187189;NR3C1:-0.973235780553;PAX2:-0.973998419984;FOXP3:-1.00375859641;MYFfamily:-1.01209461623;CREB1:-1.05500333202;AR:-1.07215143623;SREBF1,2:-1.1598182492;HMX1:-1.27700774733;TFAP4:-1.41276656406;GCM1,2:-1.46404610789;ZNF238:-1.46595423458;SMAD1..7,9:-1.86541012903;MAFB:-1.91979882828;NANOG{mouse}:-2.21325505009
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10439-106E7;search_select_hide=table117:FF:10439-106E7
}}
}}

Latest revision as of 14:02, 3 June 2020

Name:prostate cancer cell line:PC-3
Species:Human (Homo sapiens)
Library ID:CNhs11243
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stage62 year old adult
sexmale
age62
cell typeunclassifiable
cell linePC-3
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005252
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11243 CAGE DRX007988 DRR008860
Accession ID Hg19

Library idBAMCTSS
CNhs11243 DRZ000285 DRZ001670
Accession ID Hg38

Library idBAMCTSS
CNhs11243 DRZ011635 DRZ013020
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.181
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.485
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0458
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0458
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.063
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.202
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0458
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0458
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0872
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.123
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.213
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.301
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.185
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.16
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris1
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.405
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0276
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0872
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.00329
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11243

Jaspar motifP-value
MA0002.20.00293
MA0003.10.3
MA0004.10.376
MA0006.10.67
MA0007.10.773
MA0009.10.307
MA0014.10.0189
MA0017.10.227
MA0018.20.00256
MA0019.10.432
MA0024.12.27227e-4
MA0025.10.27
MA0027.10.87
MA0028.10.0112
MA0029.10.458
MA0030.10.229
MA0031.10.00518
MA0035.20.525
MA0038.10.0504
MA0039.20.00113
MA0040.10.877
MA0041.10.54
MA0042.10.742
MA0043.10.0033
MA0046.10.143
MA0047.20.0203
MA0048.10.2
MA0050.10.00212
MA0051.10.117
MA0052.10.0286
MA0055.19.64394e-4
MA0057.10.386
MA0058.10.0734
MA0059.10.244
MA0060.14.51387e-12
MA0061.10.00407
MA0062.20.101
MA0065.20.357
MA0066.10.092
MA0067.10.0137
MA0068.10.891
MA0069.10.964
MA0070.10.5
MA0071.10.375
MA0072.10.316
MA0073.10.821
MA0074.10.702
MA0076.10.0542
MA0077.10.983
MA0078.10.739
MA0079.20.973
MA0080.27.52368e-9
MA0081.10.149
MA0083.10.167
MA0084.10.554
MA0087.10.252
MA0088.10.45
MA0090.10.223
MA0091.12.2821e-5
MA0092.10.0994
MA0093.10.336
MA0099.20.484
MA0100.10.4
MA0101.10.14
MA0102.20.00273
MA0103.15.58221e-5
MA0104.20.963
MA0105.10.00161
MA0106.10.597
MA0107.10.03
MA0108.20.838
MA0111.10.384
MA0112.20.0244
MA0113.10.191
MA0114.10.977
MA0115.10.878
MA0116.10.0766
MA0117.10.0284
MA0119.10.933
MA0122.10.644
MA0124.10.432
MA0125.10.424
MA0131.10.297
MA0135.10.114
MA0136.13.24242e-5
MA0137.20.0826
MA0138.20.142
MA0139.10.901
MA0140.10.323
MA0141.10.119
MA0142.10.122
MA0143.10.16
MA0144.10.47
MA0145.10.596
MA0146.10.353
MA0147.10.745
MA0148.10.00378
MA0149.10.141
MA0150.10.212
MA0152.10.639
MA0153.10.15
MA0154.10.0136
MA0155.10.116
MA0156.10.0114
MA0157.10.06
MA0159.10.601
MA0160.10.166
MA0162.10.891
MA0163.10.00265
MA0164.10.752
MA0258.10.0067
MA0259.10.0681



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11243

Novel motifP-value
10.397
100.74
1000.288
1010.491
1020.662
1030.227
1040.689
1050.0762
1060.00245
1070.836
1080.734
1090.896
110.191
1100.672
1110.364
1120.00463
1130.151
1140.171
1150.423
1160.238
1170.947
1180.139
1190.363
120.488
1200.938
1210.832
1220.961
1230.518
1240.811
1250.637
1260.81
1270.817
1280.0893
1290.837
130.484
1300.196
1310.172
1320.176
1330.226
1340.435
1350.00833
1360.374
1370.414
1380.364
1390.181
140.185
1400.00668
1410.902
1420.41
1430.796
1440.131
1450.762
1460.247
1470.6
1480.059
1490.0177
150.825
1500.987
1510.401
1520.379
1530.35
1540.951
1550.944
1560.691
1570.859
1580.123
1590.455
160.528
1600.41
1610.958
1620.995
1630.272
1640.0871
1650.848
1660.932
1670.16
1680.278
1690.468
170.702
180.0363
190.0485
20.16
200.0859
210.798
220.0611
230.277
240.627
250.523
260.885
270.296
280.891
290.834
30.394
300.934
310.786
320.0207
330.486
340.0769
350.118
360.945
370.312
380.976
390.707
40.348
400.449
410.0926
420.884
430.213
440.194
450.977
460.157
470.983
480.566
490.47
50.267
500.768
510.247
520.266
530.573
540.296
550.631
560.814
570.447
580.172
590.0352
60.852
600.0372
610.621
620.0575
630.807
640.282
650.394
662.70895e-4
670.888
680.557
690.624
70.615
700.176
710.493
720.192
730.453
740.456
750.868
760.857
770.406
780.704
796.65109e-4
80.246
800.0323
810.11
820.0371
830.298
840.647
850.00658
860.383
870.869
880.761
890.276
90.0139
900.55
910.166
920.0935
930.623
940.092
950.411
960.0232
970.521
980.585
990.192



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11243


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101019 (prostate gland cell line sample)
0101033 (prostate cancer cell line sample)
0101061 (PC-3 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0009847 (prostate field)
UBERON:0003353 (epithelium of hindgut)
UBERON:0010316 (germ layer / neural crest)

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