FF:10436-106E4: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005478 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |HumanCAGEScanFiles=NCig10057;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.pairs.bed.gz | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |accession_numbers=CAGE;DRX008002;DRR008874;DRZ000299;DRZ001684;DRZ011649;DRZ013034 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119,DOID:3493 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100787,FF:0101092 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100787,FF:0101120 | |fonse_cell_line=FF:0100787,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100787,FF:0101120 | |fonse_cell_line_closure=FF:0100787,FF:0101120 | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10436-106E4 | |id=FF:10436-106E4 | ||
|is_a=DOID:3493;;EFO:0002091;;FF: | |is_a=DOID:3493;;EFO:0002091;;FF:0000210;;FF:0101092 | ||
|is_obsolete= | |||
|library_id=CNhs10753 | |||
|library_id_phase_based=2:CNhs10753 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10436 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10436 | |||
|name=signet ring carcinoma cell line:Kato III | |name=signet ring carcinoma cell line:Kato III | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=NCig10057,,, | |profile_cagescan=NCig10057,,, | ||
|profile_hcage=CNhs10753,LSID692,release008,COMPLETED | |profile_hcage=CNhs10753,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.020330879149429,0,0,0,0,-0.0164913478271008,0.112085514980729,-0.234171539907232,-0.262072681427513,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.11266125204957,0,0,0,0.020330879149429,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.12019705332141,0,0,0,0,0,0,0,0,0.65336596382005,0,0,0,0,0,-0.0810027456015433,0,-0.0969923612426051,0,0,-0.0195033548587919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.195408352872938,0.0867025791544045,0,0,-0.0584468268118252,0.0222714718670672,0,0,0.020330879149429,0,-0.0573735929388484,-0.118146321651466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232499804584635,0,0,0,-0.125576014121094,-0.187850707253185,0,0,0,0,0,0.0406617582988581 | |||
|repeat_enrich_byname=0,0,0,0.077840272354305,-0.0573735929388484,0,0,0.112085514980729,0,0,0.173405158308809,0,0,0,0,0,0.0277526459492801,0,-0.474086218752008,0.0575818056405448,0.0389201361771525,0,0.02994206654837,0,0,0,0.0255123687952741,0.0406617582988581,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.00524878489047605,0.132752687086648,0,0,0,0,0.0268543053191116,0,-0.0802177254948826,-0.0827201683234173,-0.221611588102807,-0.369675233789043,0.196094516002476,0,0,0,-0.614672365743389,0.813108904579763,0,0,-0.121779851751874,-0.142429482383507,0,0,-0.391044581551635,0,-0.191906241327648,0.0115086730279385,0,-0.000444878917463365,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.338738570683243,0,0,0,0,-0.0661794136814986,0,0,0.398118433067354,0.0683865760332066,0,0.390305030920109,0,-0.261727968711055,0.0369498432019566,0.280742675927327,-0.194318720925814,-0.147401849371139,-0.0778962045691178,0,-0.266312912966603,0.135999489917283,0.0219440961548054,-0.185645336764703,-0.0358187987012154,-0.0348859369326533,0.250994798876343,0.112085514980729,0.173405158308809,0.0406617582988581,0.439437001770761,0,0.0469263472934425,0.156804190723757,-0.0167519275323358,0.153877835310355,-0.134287318639271,-0.095250998970075,-0.345045760749415,-0.0395325284566706,-0.139445665835643,0,-0.4215723249037,0,0,-0.0149901860164002,0.208790788274932,0.274864087888315,0.085237251905934,0,-0.090884460668125,-0.0683442610773682,0.0389201361771525,-0.309709015302626,-0.0581261552879573,0,0,0.0776476150975255,0,0,0.164738364124422,0,0,0.0971096371600273,0.194247491833727,-0.0890288792962595,0,0.092916010222215,0.0212917514944101,-0.0614199121969995,0,0.068009763276182,0.0555136401906402,0.159028408294702,0.0828658017165534,0,0.0377847514937135,-0.0899949478436823,0.0615851084044177,0.00388118543527638,-0.0584468268118252,-0.0046737651979516,-0.146081087596216,-0.147509244890771,-0.362663873963213,-0.0215651680172123,-0.0881268324752877,0,-0.88354475051838,-0.679498131621524,-0.0224517875609358,-0.291384068446664,0,-0.0658640460293658,0,-0.0129197137924479,0,-0.242765899564826,0.0218658126808696,0.244465213230199,0.119325896910928,0,-0.135123835801977,-0.450112385255907,0,-0.0955636279009572,0,0.56229956415411,-0.109705325035781,0.888796137065415,0.00246223380290947,-0.0522868775247903,0,-0.216256644145199,0,0,0.144937102231053,0.0394554834704559,0,-0.0164957695302179,-0.0587414413648405,-0.211123040052439,-0.115971073434934,0,0,-0.645700337992725,0,0,0.54187130043648,0,0.429730240064693,-0.253326341486756,0,0.392756535589935,0,0,-0.0654422509844462,0,-0.314639967805194,0,0,0.29260142770261,-0.00286948036142098,0,0,0,0,0,0,0,0,0,0,0,-0.400790401108763,-0.354833330216448,0,-0.321125414679517,0,0,0,0,0.077840272354305,0,0,0,-1.59233083881968,0,0.286983928412247,0.0560427574903645,0,0,0,-0.0718967202941894,-0.0594098798354385,0.112085514980729,0.165131882197563,0,0,0,0,0.0872641685195974,0,0,0,0.020330879149429,0.0543550579270655,-0.297752241263188,0,0,0,-0.236292643302932,0,0,0,-0.00378332140584358,0.00134699957331907,0,0,-0.132338599391169,0,0.00385182437522569,-0.0815818795468414,0,-0.0565306076782135,-0.291208706101471,0.0839962113637323,0,0.173405158308809,-0.261347131789888,0,0.020330879149429,0.186877131505946,-0.081855182378243,0,-0.00059389679668794,0,0,0,0,0,0.0406617582988581,-0.214314512399756,0.0219199193006665,0,0,0,0,0,0,0,0,0,0,-0.251093561722982,-0.0515622983596524,0.0103692388347377,0,0,0.0406617582988581,0,0,0,0.076442451003105,0.131851966782498,0,0,0,0,0,0,0,0,-0.174431350968047,0,0,0,0,0,-0.0969923612426051,0,0.0406617582988581,0,0.0406617582988581,-0.524145362855026,0,0,-0.199521859839209,0,0,0,0,0,0,0.0054127806296706,0,0,0,0,0,0,0.128368246794742,-0.355950822580872,0,0.0406617582988581,0,0,0,0.112085514980729,0,-0.234171539907232,0,0,0,0,-0.00179885872824771,0,0,0,0.233222167728911,0,-0.0164913478271008,0,0,0,0,0,0,0.0719133411296425,0,0,0,0,0,0,0,0,0,0,0.0389201361771525,0,0,0,-0.147329770842474,0,-0.0600791408019292,-0.0825411062749274,0,0,-0.212297473483612,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0211847136852764,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0256527012310865,-0.0954705966667528,-0.133154030719683,0,0,0,-0.054385572482455,0,0,-0.0848876087594281,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.0406617582988581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085514980729,0,0.410001344088667,-0.11266125204957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0406617582988581,0,0,0.020330879149429,0,0,0,0,0,0,0.066537110806592,0.077840272354305,0,0,0,0,0,0,0,0,0,0,0,0,0.077840272354305,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0396810713482349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153741534120205,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.509842284216854,0,0,0,0,-0.0476371106609188,0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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+06 | ||
|rna_weight_ug=21.48075 | |rna_weight_ug=21.48075 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2088 | |sample_cell_catalog=RCB2088 | ||
|sample_cell_line=Kato III | |sample_cell_line=Kato III | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.89538593158501e-242!GO:0043231;intracellular membrane-bound organelle;1.53457243478899e-195!GO:0043227;membrane-bound organelle;3.49316183705476e-195!GO:0043226;organelle;4.18504124794464e-191!GO:0043229;intracellular organelle;7.8870427426606e-191!GO:0005737;cytoplasm;1.24653446986394e-184!GO:0044422;organelle part;3.70229847252644e-161!GO:0044446;intracellular organelle part;8.47638063197903e-160!GO:0044444;cytoplasmic part;5.96643655519592e-133!GO:0032991;macromolecular complex;6.77140681340019e-106!GO:0030529;ribonucleoprotein complex;3.3807269227304e-85!GO:0044237;cellular metabolic process;3.87056856414516e-83!GO:0003723;RNA binding;5.56463672717985e-80!GO:0044428;nuclear part;4.74577177361568e-79!GO:0044238;primary metabolic process;6.72700388780263e-78!GO:0005634;nucleus;1.06572502566744e-75!GO:0043233;organelle lumen;1.76486484904184e-75!GO:0031974;membrane-enclosed lumen;1.76486484904184e-75!GO:0005739;mitochondrion;1.73418815518731e-74!GO:0043170;macromolecule metabolic process;4.9656476753033e-72!GO:0005515;protein binding;6.68007898417302e-61!GO:0043234;protein complex;3.09397349317029e-55!GO:0031090;organelle membrane;9.77490795182744e-55!GO:0006396;RNA processing;3.60244896804022e-54!GO:0044429;mitochondrial part;3.78936322428814e-49!GO:0005840;ribosome;6.79118827428536e-49!GO:0006412;translation;1.04218703604103e-47!GO:0019538;protein metabolic process;1.28471177013165e-45!GO:0031981;nuclear lumen;3.07393526333718e-45!GO:0031967;organelle envelope;9.15037309497497e-45!GO:0031975;envelope;2.24282437999301e-44!GO:0015031;protein transport;9.21308632329566e-44!GO:0016043;cellular component organization and biogenesis;6.52236755577417e-43!GO:0016071;mRNA metabolic process;1.62548395175638e-42!GO:0033036;macromolecule localization;2.19372925806208e-42!GO:0044267;cellular protein metabolic process;6.10743626092472e-42!GO:0003735;structural constituent of ribosome;1.75699268679862e-41!GO:0043283;biopolymer metabolic process;5.72843473108709e-40!GO:0044260;cellular macromolecule metabolic process;5.98753729018924e-40!GO:0045184;establishment of protein localization;9.78504444408299e-40!GO:0008380;RNA splicing;3.92116273844732e-39!GO:0008104;protein localization;1.24665232409358e-38!GO:0009058;biosynthetic process;1.40637091249758e-38!GO:0006397;mRNA processing;2.62547425417689e-38!GO:0006259;DNA metabolic process;4.45984464739996e-38!GO:0005829;cytosol;3.68605144460861e-37!GO:0043228;non-membrane-bound organelle;4.32319444409236e-37!GO:0043232;intracellular non-membrane-bound organelle;4.32319444409236e-37!GO:0009059;macromolecule biosynthetic process;2.86381801747923e-36!GO:0044249;cellular biosynthetic process;7.61147952082381e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.2285869185075e-35!GO:0033279;ribosomal subunit;7.64080259407005e-35!GO:0006996;organelle organization and biogenesis;4.60246576245555e-33!GO:0046907;intracellular transport;7.53374291324271e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.37777893278313e-32!GO:0007049;cell cycle;1.93093349098555e-32!GO:0065003;macromolecular complex assembly;2.67595003620912e-31!GO:0010467;gene expression;6.86170567143493e-31!GO:0005740;mitochondrial envelope;1.72480952063328e-30!GO:0019866;organelle inner membrane;3.04466829026734e-30!GO:0006886;intracellular protein transport;4.56073697906426e-30!GO:0000166;nucleotide binding;9.91253997537046e-30!GO:0031966;mitochondrial membrane;1.50145446594525e-29!GO:0005654;nucleoplasm;2.54963942878816e-28!GO:0005681;spliceosome;4.18187212665319e-28!GO:0005743;mitochondrial inner membrane;1.67765690006203e-27!GO:0022607;cellular component assembly;3.60994071967309e-27!GO:0006974;response to DNA damage stimulus;5.4304181135057e-24!GO:0005694;chromosome;1.78245391919066e-23!GO:0022402;cell cycle process;2.11193558261802e-23!GO:0031980;mitochondrial lumen;2.15504739747572e-23!GO:0005759;mitochondrial matrix;2.15504739747572e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.83702630199331e-23!GO:0000278;mitotic cell cycle;5.75965583540151e-23!GO:0044451;nucleoplasm part;9.6871185656812e-23!GO:0012505;endomembrane system;9.98325391704666e-23!GO:0006119;oxidative phosphorylation;2.76514235474079e-22!GO:0032553;ribonucleotide binding;4.15970562521257e-22!GO:0032555;purine ribonucleotide binding;4.15970562521257e-22!GO:0017076;purine nucleotide binding;4.88100586043505e-22!GO:0051649;establishment of cellular localization;5.44954875797328e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.61346471192015e-22!GO:0016462;pyrophosphatase activity;8.62263511748867e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.1095268331133e-21!GO:0051641;cellular localization;2.02969684560094e-21!GO:0005524;ATP binding;4.37607886830831e-21!GO:0044427;chromosomal part;4.63363367626754e-21!GO:0017111;nucleoside-triphosphatase activity;5.50779845457082e-21!GO:0032559;adenyl ribonucleotide binding;7.63736204441893e-21!GO:0030554;adenyl nucleotide binding;1.57221761777171e-20!GO:0006281;DNA repair;1.70044643653769e-20!GO:0044445;cytosolic part;5.74628697948153e-20!GO:0015935;small ribosomal subunit;1.23117487194386e-19!GO:0044265;cellular macromolecule catabolic process;1.42174696926244e-19!GO:0016874;ligase activity;1.68793720631601e-19!GO:0044455;mitochondrial membrane part;1.9712944828642e-19!GO:0003676;nucleic acid binding;4.77255241373798e-19!GO:0022618;protein-RNA complex assembly;1.20185303935757e-18!GO:0000087;M phase of mitotic cell cycle;1.61432617912975e-18!GO:0005730;nucleolus;2.31587856525577e-18!GO:0007067;mitosis;4.26619486861753e-18!GO:0022403;cell cycle phase;9.0130122595981e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.3284354787315e-17!GO:0051301;cell division;2.61195107577997e-17!GO:0051186;cofactor metabolic process;3.63239099441979e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.68492696977899e-17!GO:0019941;modification-dependent protein catabolic process;6.99251110405458e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.99251110405458e-17!GO:0044257;cellular protein catabolic process;9.08538433800972e-17!GO:0005783;endoplasmic reticulum;9.6338630085572e-17!GO:0006260;DNA replication;1.39178503942071e-16!GO:0009719;response to endogenous stimulus;1.43122700069909e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.55265989504503e-16!GO:0006512;ubiquitin cycle;2.19858762879032e-16!GO:0005761;mitochondrial ribosome;2.77739729515344e-16!GO:0000313;organellar ribosome;2.77739729515344e-16!GO:0015934;large ribosomal subunit;2.77739729515344e-16!GO:0044248;cellular catabolic process;3.23653069276845e-16!GO:0051276;chromosome organization and biogenesis;3.73833006054487e-16!GO:0043285;biopolymer catabolic process;4.10425412020136e-16!GO:0005746;mitochondrial respiratory chain;4.45112894903511e-16!GO:0006457;protein folding;4.75841094350473e-16!GO:0008135;translation factor activity, nucleic acid binding;7.35591278034855e-16!GO:0000279;M phase;8.31867909935338e-16!GO:0009057;macromolecule catabolic process;8.37003191994978e-16!GO:0016887;ATPase activity;1.03454945210853e-15!GO:0042623;ATPase activity, coupled;1.28232313292583e-15!GO:0044432;endoplasmic reticulum part;2.00128963777221e-15!GO:0048770;pigment granule;5.49937016058562e-15!GO:0042470;melanosome;5.49937016058562e-15!GO:0006605;protein targeting;6.58112713068805e-15!GO:0042254;ribosome biogenesis and assembly;7.48200669963186e-15!GO:0006732;coenzyme metabolic process;1.02627891842357e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.6334611380869e-14!GO:0005794;Golgi apparatus;2.11346842052481e-14!GO:0005635;nuclear envelope;3.21966057255483e-14!GO:0030163;protein catabolic process;5.29329717056112e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.3133106579873e-14!GO:0003954;NADH dehydrogenase activity;6.3133106579873e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.3133106579873e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.78901984064105e-14!GO:0000375;RNA splicing, via transesterification reactions;8.78901984064105e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.78901984064105e-14!GO:0008134;transcription factor binding;9.89922636285626e-14!GO:0043412;biopolymer modification;3.36686504356236e-13!GO:0003743;translation initiation factor activity;3.36686504356236e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.71540591180919e-13!GO:0016070;RNA metabolic process;6.269152803621e-13!GO:0016604;nuclear body;8.86976102270816e-13!GO:0051082;unfolded protein binding;1.02900495324971e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.37829345541119e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.4381800498043e-12!GO:0031965;nuclear membrane;1.88738960443386e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.96818787473072e-12!GO:0042773;ATP synthesis coupled electron transport;1.96818787473072e-12!GO:0005789;endoplasmic reticulum membrane;3.13710511968077e-12!GO:0048193;Golgi vesicle transport;4.23646079118893e-12!GO:0004386;helicase activity;6.70664271020082e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.09053462892888e-12!GO:0045271;respiratory chain complex I;7.09053462892888e-12!GO:0005747;mitochondrial respiratory chain complex I;7.09053462892888e-12!GO:0044453;nuclear membrane part;8.20880223279453e-12!GO:0016192;vesicle-mediated transport;8.28318995150175e-12!GO:0051726;regulation of cell cycle;9.19967124549735e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.17859005322357e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.353438537331e-11!GO:0000074;regulation of progression through cell cycle;1.35415520269264e-11!GO:0006413;translational initiation;1.3669485954187e-11!GO:0016787;hydrolase activity;1.94018909922171e-11!GO:0006464;protein modification process;2.7381072304279e-11!GO:0006399;tRNA metabolic process;2.93307979011421e-11!GO:0006913;nucleocytoplasmic transport;3.89239849031312e-11!GO:0000785;chromatin;4.38610761881299e-11!GO:0006323;DNA packaging;4.43296140406989e-11!GO:0009055;electron carrier activity;4.43296140406989e-11!GO:0012501;programmed cell death;4.48548582064787e-11!GO:0008026;ATP-dependent helicase activity;4.53575514919637e-11!GO:0006915;apoptosis;5.32335552750536e-11!GO:0051169;nuclear transport;8.15250307365801e-11!GO:0006366;transcription from RNA polymerase II promoter;8.80300007843725e-11!GO:0006446;regulation of translational initiation;1.07753773216369e-10!GO:0008219;cell death;1.6152367368945e-10!GO:0016265;death;1.6152367368945e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.01822844257484e-10!GO:0005768;endosome;3.2376820081941e-10!GO:0008565;protein transporter activity;3.47220931013367e-10!GO:0016607;nuclear speck;3.9269015311455e-10!GO:0045333;cellular respiration;4.36375161671004e-10!GO:0009060;aerobic respiration;7.00391000944076e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.28721323923311e-10!GO:0051188;cofactor biosynthetic process;8.84000547671982e-10!GO:0065004;protein-DNA complex assembly;8.86154284051833e-10!GO:0043687;post-translational protein modification;8.91329590558314e-10!GO:0005643;nuclear pore;9.36496167576756e-10!GO:0006364;rRNA processing;1.0759754548956e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.19567886759996e-09!GO:0016072;rRNA metabolic process;1.36176189122087e-09!GO:0006403;RNA localization;2.314683013903e-09!GO:0009056;catabolic process;2.37078792534093e-09!GO:0009259;ribonucleotide metabolic process;2.46094298900162e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.53853913139874e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.53853913139874e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.53853913139874e-09!GO:0050657;nucleic acid transport;2.92308924516924e-09!GO:0051236;establishment of RNA localization;2.92308924516924e-09!GO:0050658;RNA transport;2.92308924516924e-09!GO:0065002;intracellular protein transport across a membrane;2.93388104532054e-09!GO:0003712;transcription cofactor activity;3.43698367188825e-09!GO:0015986;ATP synthesis coupled proton transport;4.43396557449209e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.43396557449209e-09!GO:0015078;hydrogen ion transmembrane transporter activity;5.23747375499132e-09!GO:0006333;chromatin assembly or disassembly;7.89108367957006e-09!GO:0043038;amino acid activation;7.89732016544791e-09!GO:0006418;tRNA aminoacylation for protein translation;7.89732016544791e-09!GO:0043039;tRNA aminoacylation;7.89732016544791e-09!GO:0006163;purine nucleotide metabolic process;8.0449343355245e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.52453107810234e-09!GO:0009150;purine ribonucleotide metabolic process;2.30102221835702e-08!GO:0009108;coenzyme biosynthetic process;2.3427061985538e-08!GO:0006461;protein complex assembly;2.42869320194064e-08!GO:0007005;mitochondrion organization and biogenesis;2.44860222649007e-08!GO:0005819;spindle;2.44860222649007e-08!GO:0006261;DNA-dependent DNA replication;2.76075114188092e-08!GO:0006752;group transfer coenzyme metabolic process;3.00527998315743e-08!GO:0046034;ATP metabolic process;3.14226163783037e-08!GO:0005657;replication fork;3.76790788018552e-08!GO:0009260;ribonucleotide biosynthetic process;3.89162869854862e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.03578167978968e-08!GO:0006754;ATP biosynthetic process;5.15971512341937e-08!GO:0006753;nucleoside phosphate metabolic process;5.15971512341937e-08!GO:0006164;purine nucleotide biosynthetic process;5.30368065031805e-08!GO:0009141;nucleoside triphosphate metabolic process;5.84722908492483e-08!GO:0017038;protein import;6.74446906994011e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.99920357154629e-08!GO:0008639;small protein conjugating enzyme activity;7.62419634310655e-08!GO:0046930;pore complex;7.97673358345148e-08!GO:0000775;chromosome, pericentric region;9.5016775499964e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.011688605217e-07!GO:0019829;cation-transporting ATPase activity;1.11893543756636e-07!GO:0016779;nucleotidyltransferase activity;1.14636560923866e-07!GO:0019787;small conjugating protein ligase activity;1.18740149879448e-07!GO:0016740;transferase activity;1.18740149879448e-07!GO:0006099;tricarboxylic acid cycle;1.24012737613368e-07!GO:0046356;acetyl-CoA catabolic process;1.24012737613368e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.34626902494348e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.34626902494348e-07!GO:0006084;acetyl-CoA metabolic process;1.39264809637669e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.43407417597792e-07!GO:0004842;ubiquitin-protein ligase activity;1.53177353177944e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.8147614158405e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.8147614158405e-07!GO:0051028;mRNA transport;1.96706596590642e-07!GO:0005793;ER-Golgi intermediate compartment;2.1504938021281e-07!GO:0009109;coenzyme catabolic process;2.63997115069822e-07!GO:0007051;spindle organization and biogenesis;2.66244606243586e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.73857882105395e-07!GO:0015630;microtubule cytoskeleton;2.86303733666017e-07!GO:0043566;structure-specific DNA binding;3.32509333664565e-07!GO:0003724;RNA helicase activity;3.39569471617465e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.57819911827772e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.60929616240656e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.60929616240656e-07!GO:0016568;chromatin modification;4.34584461022917e-07!GO:0004298;threonine endopeptidase activity;4.35644701634022e-07!GO:0005770;late endosome;6.13033119090256e-07!GO:0051187;cofactor catabolic process;6.76298237314136e-07!GO:0000151;ubiquitin ligase complex;7.44605046371134e-07!GO:0016567;protein ubiquitination;7.44605046371134e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.53519816755551e-07!GO:0016881;acid-amino acid ligase activity;7.97778176737924e-07!GO:0000245;spliceosome assembly;8.29293204765335e-07!GO:0005667;transcription factor complex;9.12476527481656e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.28190739100343e-07!GO:0005813;centrosome;1.16775305650286e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.16775305650286e-06!GO:0048475;coated membrane;1.32663750971182e-06!GO:0030117;membrane coat;1.32663750971182e-06!GO:0003697;single-stranded DNA binding;1.43902523507899e-06!GO:0044440;endosomal part;1.43902523507899e-06!GO:0010008;endosome membrane;1.43902523507899e-06!GO:0006793;phosphorus metabolic process;1.46998380304153e-06!GO:0006796;phosphate metabolic process;1.46998380304153e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.58176854196563e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.66416029448989e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.75068847258765e-06!GO:0032446;protein modification by small protein conjugation;1.83905057611796e-06!GO:0045259;proton-transporting ATP synthase complex;2.18979033198087e-06!GO:0005773;vacuole;2.48396467100109e-06!GO:0030120;vesicle coat;3.0724061674386e-06!GO:0030662;coated vesicle membrane;3.0724061674386e-06!GO:0043623;cellular protein complex assembly;3.09220601627547e-06!GO:0044431;Golgi apparatus part;3.3295528547594e-06!GO:0005815;microtubule organizing center;3.40851465592012e-06!GO:0051329;interphase of mitotic cell cycle;4.96504007911066e-06!GO:0006302;double-strand break repair;5.40103440495013e-06!GO:0000323;lytic vacuole;5.76587153912762e-06!GO:0005764;lysosome;5.76587153912762e-06!GO:0006334;nucleosome assembly;7.26997780259128e-06!GO:0006613;cotranslational protein targeting to membrane;9.04773416193042e-06!GO:0051325;interphase;9.60156149144598e-06!GO:0031497;chromatin assembly;1.04078782916801e-05!GO:0000314;organellar small ribosomal subunit;1.26114759387697e-05!GO:0005763;mitochondrial small ribosomal subunit;1.26114759387697e-05!GO:0005762;mitochondrial large ribosomal subunit;1.28961834941174e-05!GO:0000315;organellar large ribosomal subunit;1.28961834941174e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.32861230772896e-05!GO:0015399;primary active transmembrane transporter activity;1.32861230772896e-05!GO:0042981;regulation of apoptosis;1.35748101847197e-05!GO:0051168;nuclear export;1.38240773271922e-05!GO:0045454;cell redox homeostasis;1.43871206145471e-05!GO:0043067;regulation of programmed cell death;1.64408864251823e-05!GO:0003713;transcription coactivator activity;1.65139198410873e-05!GO:0009117;nucleotide metabolic process;1.65139198410873e-05!GO:0007059;chromosome segregation;1.80030396040865e-05!GO:0051427;hormone receptor binding;1.8636981624367e-05!GO:0016563;transcription activator activity;2.06603097890718e-05!GO:0008186;RNA-dependent ATPase activity;2.16571913381252e-05!GO:0016310;phosphorylation;2.35062562444327e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.47701517829927e-05!GO:0051170;nuclear import;2.47701517829927e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.56324823003781e-05!GO:0006091;generation of precursor metabolites and energy;2.7975603105612e-05!GO:0000075;cell cycle checkpoint;2.88836322984303e-05!GO:0051246;regulation of protein metabolic process;3.03270811226559e-05!GO:0016491;oxidoreductase activity;3.54605858786888e-05!GO:0031968;organelle outer membrane;3.84278781710992e-05!GO:0003899;DNA-directed RNA polymerase activity;3.91760784103991e-05!GO:0035257;nuclear hormone receptor binding;4.11758694247888e-05!GO:0019867;outer membrane;4.50469177076441e-05!GO:0006606;protein import into nucleus;4.80189269450734e-05!GO:0005769;early endosome;6.20810120434803e-05!GO:0005741;mitochondrial outer membrane;6.39611973698749e-05!GO:0004004;ATP-dependent RNA helicase activity;6.52658455109909e-05!GO:0043069;negative regulation of programmed cell death;6.52658455109909e-05!GO:0006352;transcription initiation;6.86818356116452e-05!GO:0008654;phospholipid biosynthetic process;7.34566518565338e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.41213164021715e-05!GO:0043021;ribonucleoprotein binding;7.57037745393665e-05!GO:0005798;Golgi-associated vesicle;8.37827861381462e-05!GO:0008094;DNA-dependent ATPase activity;9.80632959855696e-05!GO:0043066;negative regulation of apoptosis;0.000100056311260506!GO:0006612;protein targeting to membrane;0.000100056311260506!GO:0045786;negative regulation of progression through cell cycle;0.000110193319549995!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000116798756305778!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000117483705808383!GO:0000139;Golgi membrane;0.000117848534457043!GO:0051052;regulation of DNA metabolic process;0.000118619370049004!GO:0003729;mRNA binding;0.000119353797063301!GO:0003690;double-stranded DNA binding;0.000149414327056557!GO:0007088;regulation of mitosis;0.000197251903106526!GO:0048523;negative regulation of cellular process;0.00020170538395613!GO:0016251;general RNA polymerase II transcription factor activity;0.000206433836744432!GO:0031988;membrane-bound vesicle;0.000216392327125709!GO:0000786;nucleosome;0.000224785202906305!GO:0016023;cytoplasmic membrane-bound vesicle;0.000227960960948219!GO:0043492;ATPase activity, coupled to movement of substances;0.000243096300783187!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000257008793741921!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00026149161115414!GO:0016564;transcription repressor activity;0.000265067446944462!GO:0000776;kinetochore;0.000273765528745313!GO:0006626;protein targeting to mitochondrion;0.000284171291777142!GO:0005788;endoplasmic reticulum lumen;0.000285869512723675!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000287612917859411!GO:0006916;anti-apoptosis;0.000288742697065863!GO:0006401;RNA catabolic process;0.000289062201543693!GO:0015992;proton transport;0.000307756806141377!GO:0006818;hydrogen transport;0.000324035034199334!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000328993909459803!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000332423565438969!GO:0044452;nucleolar part;0.000356816749423279!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000399938645721749!GO:0007052;mitotic spindle organization and biogenesis;0.000466173758199195!GO:0008033;tRNA processing;0.000499230095407149!GO:0006082;organic acid metabolic process;0.000500633024828363!GO:0005525;GTP binding;0.000507495332384756!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000513125087943008!GO:0019752;carboxylic acid metabolic process;0.000542850712469767!GO:0016853;isomerase activity;0.000543272816081229!GO:0006402;mRNA catabolic process;0.00057558491034885!GO:0007243;protein kinase cascade;0.000578490442950719!GO:0004527;exonuclease activity;0.000641571473272446!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000646415847124276!GO:0003682;chromatin binding;0.000654118702602527!GO:0043681;protein import into mitochondrion;0.000659793945913765!GO:0051252;regulation of RNA metabolic process;0.000660751799798714!GO:0043596;nuclear replication fork;0.000683855733401317!GO:0042802;identical protein binding;0.000733453495831615!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000739648571806077!GO:0050794;regulation of cellular process;0.000858906053215314!GO:0005048;signal sequence binding;0.000864500000506319!GO:0006310;DNA recombination;0.000872884868366753!GO:0022890;inorganic cation transmembrane transporter activity;0.000884959249314286!GO:0065009;regulation of a molecular function;0.000884959249314286!GO:0031982;vesicle;0.00089653164429802!GO:0005774;vacuolar membrane;0.000897730286049808!GO:0050662;coenzyme binding;0.000913689664954205!GO:0006891;intra-Golgi vesicle-mediated transport;0.000941073998075735!GO:0003924;GTPase activity;0.000973025900756372!GO:0003678;DNA helicase activity;0.00100332932571153!GO:0000049;tRNA binding;0.00104762770794244!GO:0033116;ER-Golgi intermediate compartment membrane;0.00104789839735593!GO:0031410;cytoplasmic vesicle;0.00104789839735593!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00105464751377903!GO:0051920;peroxiredoxin activity;0.0011194030019929!GO:0016363;nuclear matrix;0.00114521766359035!GO:0019899;enzyme binding;0.00117678275779597!GO:0030118;clathrin coat;0.00118137337292566!GO:0015980;energy derivation by oxidation of organic compounds;0.0012917598742445!GO:0046474;glycerophospholipid biosynthetic process;0.00132722542071766!GO:0048471;perinuclear region of cytoplasm;0.00133414780630743!GO:0031072;heat shock protein binding;0.00137677405113926!GO:0005885;Arp2/3 protein complex;0.00137723799702951!GO:0046489;phosphoinositide biosynthetic process;0.00151233790852031!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00154840044973309!GO:0005684;U2-dependent spliceosome;0.00156286544049958!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157396038267813!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157396038267813!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157396038267813!GO:0006839;mitochondrial transport;0.00165998926193322!GO:0030880;RNA polymerase complex;0.00178330085017837!GO:0004518;nuclease activity;0.00179023232921191!GO:0031252;leading edge;0.00182297783149632!GO:0043488;regulation of mRNA stability;0.00187195863870865!GO:0043487;regulation of RNA stability;0.00187195863870865!GO:0031902;late endosome membrane;0.00187195863870865!GO:0048500;signal recognition particle;0.00188964648794623!GO:0008632;apoptotic program;0.00196159364430401!GO:0000059;protein import into nucleus, docking;0.00202065893521955!GO:0016272;prefoldin complex;0.00202065893521955!GO:0008637;apoptotic mitochondrial changes;0.00202065893521955!GO:0006650;glycerophospholipid metabolic process;0.00209252196869655!GO:0031324;negative regulation of cellular metabolic process;0.00216162614148493!GO:0006414;translational elongation;0.00218043620280147!GO:0030521;androgen receptor signaling pathway;0.00222337446434044!GO:0005637;nuclear inner membrane;0.00222337446434044!GO:0048519;negative regulation of biological process;0.00227339316092877!GO:0044437;vacuolar part;0.00229414206479365!GO:0030867;rough endoplasmic reticulum membrane;0.00238024894493962!GO:0032508;DNA duplex unwinding;0.00240915352328829!GO:0032392;DNA geometric change;0.00240915352328829!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00250826625639768!GO:0005876;spindle microtubule;0.00258124088468517!GO:0016197;endosome transport;0.00267512165505475!GO:0031124;mRNA 3'-end processing;0.00269551797081011!GO:0030176;integral to endoplasmic reticulum membrane;0.0027102743481031!GO:0006405;RNA export from nucleus;0.0027890371901767!GO:0030119;AP-type membrane coat adaptor complex;0.0027890371901767!GO:0008312;7S RNA binding;0.00280149067665781!GO:0007264;small GTPase mediated signal transduction;0.00284797662352141!GO:0032561;guanyl ribonucleotide binding;0.00286838222787536!GO:0019001;guanyl nucleotide binding;0.00286838222787536!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0030981205924187!GO:0051087;chaperone binding;0.00314194153144008!GO:0008022;protein C-terminus binding;0.00317807725136941!GO:0048522;positive regulation of cellular process;0.00326784199850119!GO:0030131;clathrin adaptor complex;0.00327371244106195!GO:0006268;DNA unwinding during replication;0.00328208476697505!GO:0051540;metal cluster binding;0.00332762115146224!GO:0051536;iron-sulfur cluster binding;0.00332762115146224!GO:0003702;RNA polymerase II transcription factor activity;0.00337810780739715!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00345074921506605!GO:0035258;steroid hormone receptor binding;0.0034535231027569!GO:0009892;negative regulation of metabolic process;0.00353297098532007!GO:0042393;histone binding;0.00356170521573721!GO:0015631;tubulin binding;0.00366680640703564!GO:0051789;response to protein stimulus;0.00367135144300975!GO:0006986;response to unfolded protein;0.00367135144300975!GO:0043601;nuclear replisome;0.00373379849373435!GO:0030894;replisome;0.00373379849373435!GO:0006383;transcription from RNA polymerase III promoter;0.00373379849373435!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00373379849373435!GO:0000428;DNA-directed RNA polymerase complex;0.00373379849373435!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0037792515170833!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00380190974612629!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00380190974612629!GO:0005765;lysosomal membrane;0.00392394256938484!GO:0004576;oligosaccharyl transferase activity;0.00396540571907756!GO:0006950;response to stress;0.00406565747028091!GO:0030384;phosphoinositide metabolic process;0.00406565747028091!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00430864506960198!GO:0045047;protein targeting to ER;0.00430864506960198!GO:0003684;damaged DNA binding;0.00447159426947267!GO:0006270;DNA replication initiation;0.00455826421875181!GO:0016741;transferase activity, transferring one-carbon groups;0.00463871708381432!GO:0007033;vacuole organization and biogenesis;0.00463944622312201!GO:0000725;recombinational repair;0.00464434539827964!GO:0000724;double-strand break repair via homologous recombination;0.00464434539827964!GO:0003714;transcription corepressor activity;0.00466203740487034!GO:0046483;heterocycle metabolic process;0.00472436970021068!GO:0000922;spindle pole;0.00484958839989003!GO:0006611;protein export from nucleus;0.00501194097326703!GO:0030133;transport vesicle;0.00513333160267393!GO:0007040;lysosome organization and biogenesis;0.00513333160267393!GO:0000228;nuclear chromosome;0.00513333160267393!GO:0007093;mitotic cell cycle checkpoint;0.00514738053922326!GO:0008250;oligosaccharyl transferase complex;0.0052876804245799!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0052876804245799!GO:0015002;heme-copper terminal oxidase activity;0.0052876804245799!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0052876804245799!GO:0004129;cytochrome-c oxidase activity;0.0052876804245799!GO:0000070;mitotic sister chromatid segregation;0.00557442818946093!GO:0000287;magnesium ion binding;0.00559526962990591!GO:0008234;cysteine-type peptidase activity;0.005730347175256!GO:0004674;protein serine/threonine kinase activity;0.00593002248924012!GO:0008408;3'-5' exonuclease activity;0.00607595126876708!GO:0008168;methyltransferase activity;0.00607595126876708!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0061729023298837!GO:0009165;nucleotide biosynthetic process;0.00628362795090931!GO:0005669;transcription factor TFIID complex;0.00631031703783578!GO:0030663;COPI coated vesicle membrane;0.00639681333012612!GO:0030126;COPI vesicle coat;0.00639681333012612!GO:0006520;amino acid metabolic process;0.00659535535296041!GO:0016408;C-acyltransferase activity;0.00674975867524691!GO:0048037;cofactor binding;0.00676980278597702!GO:0043022;ribosome binding;0.00676987628219851!GO:0019843;rRNA binding;0.0069313688218559!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00716931388940592!GO:0000819;sister chromatid segregation;0.0074081929416343!GO:0005791;rough endoplasmic reticulum;0.00770658148099477!GO:0048487;beta-tubulin binding;0.00785802147336718!GO:0050790;regulation of catalytic activity;0.00796280688562518!GO:0030658;transport vesicle membrane;0.00798632387153753!GO:0030659;cytoplasmic vesicle membrane;0.00833394687674235!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00839781121675684!GO:0006376;mRNA splice site selection;0.00841202092401975!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00841202092401975!GO:0046467;membrane lipid biosynthetic process;0.00860886149964061!GO:0016126;sterol biosynthetic process;0.00868147067858736!GO:0044438;microbody part;0.0087277511218966!GO:0044439;peroxisomal part;0.0087277511218966!GO:0007017;microtubule-based process;0.00876464796118523!GO:0006118;electron transport;0.00876464796118523!GO:0030518;steroid hormone receptor signaling pathway;0.00880499576513214!GO:0006595;polyamine metabolic process;0.00880499576513214!GO:0016584;nucleosome positioning;0.00884405101302355!GO:0006506;GPI anchor biosynthetic process;0.00891634055680345!GO:0016859;cis-trans isomerase activity;0.00893310953028274!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00918272956068657!GO:0000339;RNA cap binding;0.00918964369916492!GO:0007006;mitochondrial membrane organization and biogenesis;0.00936320113777804!GO:0005663;DNA replication factor C complex;0.00949733567042943!GO:0007010;cytoskeleton organization and biogenesis;0.00956029984101857!GO:0000096;sulfur amino acid metabolic process;0.00957920599682078!GO:0051539;4 iron, 4 sulfur cluster binding;0.00967771082680738!GO:0001711;endodermal cell fate commitment;0.00967771082680738!GO:0030858;positive regulation of epithelial cell differentiation;0.00967771082680738!GO:0031528;microvillus membrane;0.00967771082680738!GO:0001706;endoderm formation;0.00967771082680738!GO:0000082;G1/S transition of mitotic cell cycle;0.0100306013243487!GO:0006338;chromatin remodeling;0.0101221784595466!GO:0031123;RNA 3'-end processing;0.0101392360117123!GO:0031570;DNA integrity checkpoint;0.010156038967765!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0102089286847108!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0104792781816205!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0107344435776988!GO:0005832;chaperonin-containing T-complex;0.0108459484073727!GO:0044433;cytoplasmic vesicle part;0.0109935782571142!GO:0005869;dynactin complex;0.0111551271361446!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0113354652631137!GO:0045045;secretory pathway;0.0113967186565332!GO:0004532;exoribonuclease activity;0.0117173887506546!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0117173887506546!GO:0003756;protein disulfide isomerase activity;0.0117318743667802!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0117318743667802!GO:0005996;monosaccharide metabolic process;0.0117365770090278!GO:0031903;microbody membrane;0.0119144517979599!GO:0005778;peroxisomal membrane;0.0119144517979599!GO:0031647;regulation of protein stability;0.0120583187319577!GO:0046983;protein dimerization activity;0.0123648261649231!GO:0006505;GPI anchor metabolic process;0.0125455523849296!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0126990786877539!GO:0019318;hexose metabolic process;0.0128414938427275!GO:0008180;signalosome;0.0128823469633985!GO:0051287;NAD binding;0.0134327887456554!GO:0004448;isocitrate dehydrogenase activity;0.0139233608909012!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.014204059968184!GO:0006275;regulation of DNA replication;0.0143336234392019!GO:0008139;nuclear localization sequence binding;0.0146966846865012!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0148141343633539!GO:0051338;regulation of transferase activity;0.015776383936654!GO:0005874;microtubule;0.0162256761030656!GO:0032507;maintenance of cellular protein localization;0.0168651008173336!GO:0006497;protein amino acid lipidation;0.017091195456112!GO:0050681;androgen receptor binding;0.0171239431457969!GO:0000738;DNA catabolic process, exonucleolytic;0.0171970888597274!GO:0051053;negative regulation of DNA metabolic process;0.0174839842522251!GO:0030137;COPI-coated vesicle;0.0176506988359075!GO:0030660;Golgi-associated vesicle membrane;0.0177074432205531!GO:0006984;ER-nuclear signaling pathway;0.0180443065213702!GO:0017166;vinculin binding;0.0180668281179794!GO:0012506;vesicle membrane;0.018383029688623!GO:0016301;kinase activity;0.0185966592601707!GO:0006378;mRNA polyadenylation;0.018755076782714!GO:0003746;translation elongation factor activity;0.0189309696912595!GO:0006740;NADPH regeneration;0.0191891172830796!GO:0006098;pentose-phosphate shunt;0.0191891172830796!GO:0008538;proteasome activator activity;0.0196226025009364!GO:0030125;clathrin vesicle coat;0.0203060451392954!GO:0030665;clathrin coated vesicle membrane;0.0203060451392954!GO:0006730;one-carbon compound metabolic process;0.0203060451392954!GO:0030145;manganese ion binding;0.0204450604896543!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0205223464022583!GO:0000152;nuclear ubiquitin ligase complex;0.0205670736147441!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0206747020707891!GO:0030132;clathrin coat of coated pit;0.0218586859129862!GO:0006643;membrane lipid metabolic process;0.0218586859129862!GO:0000178;exosome (RNase complex);0.0219349766366296!GO:0001836;release of cytochrome c from mitochondria;0.0224399661870947!GO:0009967;positive regulation of signal transduction;0.0224399661870947!GO:0007265;Ras protein signal transduction;0.0225050393980253!GO:0006509;membrane protein ectodomain proteolysis;0.0226022289391536!GO:0033619;membrane protein proteolysis;0.0226022289391536!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0228734198547143!GO:0006672;ceramide metabolic process;0.0228734198547143!GO:0000726;non-recombinational repair;0.0228734198547143!GO:0018196;peptidyl-asparagine modification;0.0228734198547143!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0228734198547143!GO:0015036;disulfide oxidoreductase activity;0.0228734198547143!GO:0032200;telomere organization and biogenesis;0.0228749105207906!GO:0000723;telomere maintenance;0.0228749105207906!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0232708886473783!GO:0044262;cellular carbohydrate metabolic process;0.0233012292047678!GO:0003725;double-stranded RNA binding;0.023428779517301!GO:0000118;histone deacetylase complex;0.0236008715361115!GO:0019206;nucleoside kinase activity;0.0236008715361115!GO:0005905;coated pit;0.0236290672947413!GO:0042770;DNA damage response, signal transduction;0.0249472431800477!GO:0030433;ER-associated protein catabolic process;0.0254048305402501!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0254048305402501!GO:0045893;positive regulation of transcription, DNA-dependent;0.0254048305402501!GO:0007034;vacuolar transport;0.0261139890174189!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0267584888572099!GO:0019783;small conjugating protein-specific protease activity;0.0270009779018427!GO:0044450;microtubule organizing center part;0.0270956328774373!GO:0009451;RNA modification;0.0273517717285697!GO:0046966;thyroid hormone receptor binding;0.0273552596520743!GO:0006695;cholesterol biosynthetic process;0.0275307553649883!GO:0016790;thiolester hydrolase activity;0.0275375054566495!GO:0033170;DNA-protein loading ATPase activity;0.0280323291349497!GO:0003689;DNA clamp loader activity;0.0280323291349497!GO:0004003;ATP-dependent DNA helicase activity;0.028200269570797!GO:0043624;cellular protein complex disassembly;0.0282253143165728!GO:0016791;phosphoric monoester hydrolase activity;0.0285403487666644!GO:0045941;positive regulation of transcription;0.0286196718209278!GO:0005083;small GTPase regulator activity;0.028626273931061!GO:0006284;base-excision repair;0.0286964812499444!GO:0030503;regulation of cell redox homeostasis;0.0291107200862193!GO:0051651;maintenance of cellular localization;0.029372205217577!GO:0004540;ribonuclease activity;0.0296812745207762!GO:0007021;tubulin folding;0.0299363056257113!GO:0008017;microtubule binding;0.0301088212359336!GO:0017134;fibroblast growth factor binding;0.0302589294758145!GO:0043549;regulation of kinase activity;0.0306359438803176!GO:0030508;thiol-disulfide exchange intermediate activity;0.0310140233797483!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0314264529972967!GO:0046519;sphingoid metabolic process;0.0314548446085471!GO:0030522;intracellular receptor-mediated signaling pathway;0.0316695017724493!GO:0031901;early endosome membrane;0.0319459950897586!GO:0006892;post-Golgi vesicle-mediated transport;0.0321499185388423!GO:0006007;glucose catabolic process;0.0324952961587392!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0328210813546426!GO:0031529;ruffle organization and biogenesis;0.0328639943993613!GO:0008097;5S rRNA binding;0.0333385181950447!GO:0004843;ubiquitin-specific protease activity;0.0335057676780842!GO:0030968;unfolded protein response;0.0339642540826187!GO:0008320;protein transmembrane transporter activity;0.0344107720114019!GO:0005784;translocon complex;0.0347015592938053!GO:0022406;membrane docking;0.0348934985409477!GO:0048278;vesicle docking;0.0348934985409477!GO:0030134;ER to Golgi transport vesicle;0.0349355197871444!GO:0008610;lipid biosynthetic process;0.036061777654712!GO:0000077;DNA damage checkpoint;0.0365743089849388!GO:0007004;telomere maintenance via telomerase;0.0380976357378896!GO:0032984;macromolecular complex disassembly;0.0385202835152365!GO:0006644;phospholipid metabolic process;0.0385202835152365!GO:0046979;TAP2 binding;0.0385202835152365!GO:0046977;TAP binding;0.0385202835152365!GO:0046978;TAP1 binding;0.0385202835152365!GO:0046365;monosaccharide catabolic process;0.038893201466457!GO:0043154;negative regulation of caspase activity;0.0390624149320748!GO:0003711;transcription elongation regulator activity;0.0391124067543009!GO:0022884;macromolecule transmembrane transporter activity;0.0402457432660507!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0402457432660507!GO:0042158;lipoprotein biosynthetic process;0.0404280107164754!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0405684334046198!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0406064679373179!GO:0005758;mitochondrial intermembrane space;0.0406409551591578!GO:0016044;membrane organization and biogenesis;0.0408592798362336!GO:0009066;aspartate family amino acid metabolic process;0.0412713996996459!GO:0006739;NADP metabolic process;0.0414201685117219!GO:0008629;induction of apoptosis by intracellular signals;0.0415602641339472!GO:0030036;actin cytoskeleton organization and biogenesis;0.0415691508311331!GO:0000793;condensed chromosome;0.0416137825346203!GO:0004680;casein kinase activity;0.0418532724306027!GO:0005658;alpha DNA polymerase:primase complex;0.0418532724306027!GO:0044454;nuclear chromosome part;0.0427055110775767!GO:0030140;trans-Golgi network transport vesicle;0.0428633801351329!GO:0031371;ubiquitin conjugating enzyme complex;0.0437070678914085!GO:0005732;small nucleolar ribonucleoprotein complex;0.043748380531053!GO:0000175;3'-5'-exoribonuclease activity;0.0437949604758678!GO:0004300;enoyl-CoA hydratase activity;0.0440218664842799!GO:0006607;NLS-bearing substrate import into nucleus;0.0442161700137781!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0442161700137781!GO:0006733;oxidoreduction coenzyme metabolic process;0.0448341847820575!GO:0031625;ubiquitin protein ligase binding;0.0450606564968745!GO:0006301;postreplication repair;0.0451372551194501!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0451402819137651!GO:0010257;NADH dehydrogenase complex assembly;0.0451402819137651!GO:0033108;mitochondrial respiratory chain complex assembly;0.0451402819137651!GO:0031056;regulation of histone modification;0.0456126828173728!GO:0006904;vesicle docking during exocytosis;0.0457538751184339!GO:0000086;G2/M transition of mitotic cell cycle;0.0469244388048882!GO:0043189;H4/H2A histone acetyltransferase complex;0.0470950977596789!GO:0006458;'de novo' protein folding;0.0472050621155314!GO:0051084;'de novo' posttranslational protein folding;0.0472050621155314!GO:0030127;COPII vesicle coat;0.047525365116117!GO:0012507;ER to Golgi transport vesicle membrane;0.047525365116117!GO:0040029;regulation of gene expression, epigenetic;0.047577672162232!GO:0004221;ubiquitin thiolesterase activity;0.0486447578594943!GO:0016615;malate dehydrogenase activity;0.0491204094768038!GO:0008156;negative regulation of DNA replication;0.0497588842581271 | |||
|sample_id=10436 | |sample_id=10436 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 100: | ||
|sample_tissue=stomach | |sample_tissue=stomach | ||
|top_motifs=SNAI1..3:2.37118163781;ZEB1:2.32490651895;LMO2:1.91034968864;MYOD1:1.5969032748;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.55308756344;NR5A1,2:1.39963985022;FOXQ1:1.31631771624;PBX1:1.31396463726;E2F1..5:1.24520362757;HOX{A6,A7,B6,B7}:1.16251674117;FOXA2:1.14427258284;FOX{F1,F2,J1}:1.10288525882;ELK1,4_GABP{A,B1}:1.06953287411;bHLH_family:1.02087411178;SOX2:1.014399706;ADNP_IRX_SIX_ZHX:0.985199604405;NFY{A,B,C}:0.962556016401;FOXD3:0.950323646171;TFDP1:0.878452224957;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.866298074573;PPARG:0.858312324892;LEF1_TCF7_TCF7L1,2:0.840631864031;HNF4A_NR2F1,2:0.832120191267;ZNF148:0.748968224241;SOX{8,9,10}:0.736076342515;XCPE1{core}:0.726494247713;FOXM1:0.620460753927;ESRRA:0.610869288072;GFI1:0.595416725144;NR6A1:0.580124850779;NANOG:0.577367021984;PAX8:0.566883014731;IRF7:0.492861523799;CEBPA,B_DDIT3:0.476867359596;EP300:0.475148334509;NKX2-3_NKX2-5:0.467659651033;MYB:0.444804343741;CDC5L:0.43509883783;FOX{I1,J2}:0.433953862538;NFIX:0.38270223454;VSX1,2:0.363939622374;TLX1..3_NFIC{dimer}:0.359398862564;ONECUT1,2:0.334672986986;PAX2:0.331986896371;OCT4_SOX2{dimer}:0.328161075061;POU2F1..3:0.318472112682;HNF1A:0.30428162132;RBPJ:0.286761144891;CUX2:0.23421584471;PRRX1,2:0.224688762959;SOX5:0.218917738511;POU3F1..4:0.218802663573;PITX1..3:0.20770767111;NKX3-2:0.207614217611;FOS_FOS{B,L1}_JUN{B,D}:0.206249887188;BACH2:0.189469624992;FOXP1:0.187362605152;ATF5_CREB3:0.178741867682;SREBF1,2:0.153814396129;NFIL3:0.14379560386;BPTF:0.14019853297;TEAD1:0.135189399465;MTF1:0.128655379924;TBX4,5:0.127535021715;STAT5{A,B}:0.118210746016;ATF4:0.11140834412;YY1:0.0994749717505;POU5F1:0.0964987247618;HOX{A5,B5}:0.0865411543307;PDX1:0.0853461567351;HLF:0.0791415575143;FOSL2:0.0717162156223;ELF1,2,4:0.0498186308618;NFE2:0.0326428549962;RORA:0.0288987982371;GATA6:0.0237487397436;ARID5B:0.00314890801124;MED-1{core}:-0.00764446939768;FOXN1:-0.00977966724344;NRF1:-0.015690400757;GTF2A1,2:-0.0184806771927;ALX1:-0.0197528153035;BREu{core}:-0.023616571347;TP53:-0.0269057082213;HBP1_HMGB_SSRP1_UBTF:-0.0304452783451;TEF:-0.0384590322228;T:-0.0648633637721;NFE2L2:-0.0702683211434;IRF1,2:-0.0751964324831;ZNF143:-0.111121759419;NKX6-1,2:-0.131638972859;FOX{D1,D2}:-0.141508674862;SP1:-0.148098159327;EN1,2:-0.168751654204;LHX3,4:-0.172834119341;HES1:-0.183674454499;HAND1,2:-0.198878739234;IKZF2:-0.201372330305;STAT2,4,6:-0.219993961854;JUN:-0.247720063848;ZNF423:-0.25220091248;SOX17:-0.263567506587;EVI1:-0.271240514054;NFKB1_REL_RELA:-0.272635260688;MYBL2:-0.291524714159;AHR_ARNT_ARNT2:-0.315835194153;PAX3,7:-0.32543063651;MTE{core}:-0.343582926473;EBF1:-0.364744821782;FOXO1,3,4:-0.365729914183;RFX1:-0.370110334972;RFX2..5_RFXANK_RFXAP:-0.373389765811;ETS1,2:-0.379223135312;ZBTB6:-0.387801768622;DMAP1_NCOR{1,2}_SMARC:-0.400862428424;MEF2{A,B,C,D}:-0.407045779963;ESR1:-0.433855185608;NKX2-1,4:-0.44168748726;NKX2-2,8:-0.445705412853;IKZF1:-0.456999779187;DBP:-0.468538797792;FOXP3:-0.47485292333;PAX4:-0.489019782394;SPIB:-0.494316601765;TFCP2:-0.518477954906;TBP:-0.526391119729;CRX:-0.532105848889;POU6F1:-0.536711541595;TOPORS:-0.542104398063;SPI1:-0.543853073238;PAX5:-0.54489082772;TAL1_TCF{3,4,12}:-0.551576646516;RXRA_VDR{dimer}:-0.56073291739;RUNX1..3:-0.565590541005;NHLH1,2:-0.586791178136;ATF2:-0.609302387568;AR:-0.609694318293;TFAP2B:-0.646088600132;UFEwm:-0.661992061642;ZBTB16:-0.665018553762;AIRE:-0.679213228942;NR1H4:-0.704780046789;GTF2I:-0.722540376828;CDX1,2,4:-0.739654400076;ALX4:-0.744109889732;ZFP161:-0.761500055524;FOXL1:-0.787611104794;PAX1,9:-0.802310545149;POU1F1:-0.829149420351;HOX{A4,D4}:-0.83807012061;REST:-0.861069959948;TLX2:-0.868459999702;HMGA1,2:-0.869938982606;NR3C1:-0.877614115293;NFE2L1:-0.882968403648;PAX6:-0.887078017805;CREB1:-0.896051625069;HIC1:-0.897636255153;HMX1:-0.916936105134;XBP1:-0.927851848888;PRDM1:-0.930130998046;HIF1A:-0.932736041391;MYFfamily:-0.96775619875;RREB1:-0.971055968632;EGR1..3:-0.974215461806;GLI1..3:-0.985879371809;STAT1,3:-1.00197846386;KLF4:-1.06017000389;NKX3-1:-1.06167674228;GFI1B:-1.06638030209;ATF6:-1.11028176012;NANOG{mouse}:-1.13397023979;TGIF1:-1.1639866259;PATZ1:-1.16922236774;GCM1,2:-1.17049654388;MAZ:-1.17650766966;TFAP4:-1.18027462669;GZF1:-1.21898373883;TFAP2{A,C}:-1.26294476329;GATA4:-1.31637788492;MAFB:-1.33160863098;SRF:-1.3345268852;SMAD1..7,9:-1.36046548784;HSF1,2:-1.38716509136;ZNF384:-1.39173290049;ZNF238:-1.39863846949;SPZ1:-1.43102981512;MZF1:-1.47422209486;NFATC1..3:-1.51865963244;ZIC1..3:-1.63661553763;HOXA9_MEIS1:-1.68925760158;RXR{A,B,G}:-1.76833544336 | |top_motifs=SNAI1..3:2.37118163781;ZEB1:2.32490651895;LMO2:1.91034968864;MYOD1:1.5969032748;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.55308756344;NR5A1,2:1.39963985022;FOXQ1:1.31631771624;PBX1:1.31396463726;E2F1..5:1.24520362757;HOX{A6,A7,B6,B7}:1.16251674117;FOXA2:1.14427258284;FOX{F1,F2,J1}:1.10288525882;ELK1,4_GABP{A,B1}:1.06953287411;bHLH_family:1.02087411178;SOX2:1.014399706;ADNP_IRX_SIX_ZHX:0.985199604405;NFY{A,B,C}:0.962556016401;FOXD3:0.950323646171;TFDP1:0.878452224957;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.866298074573;PPARG:0.858312324892;LEF1_TCF7_TCF7L1,2:0.840631864031;HNF4A_NR2F1,2:0.832120191267;ZNF148:0.748968224241;SOX{8,9,10}:0.736076342515;XCPE1{core}:0.726494247713;FOXM1:0.620460753927;ESRRA:0.610869288072;GFI1:0.595416725144;NR6A1:0.580124850779;NANOG:0.577367021984;PAX8:0.566883014731;IRF7:0.492861523799;CEBPA,B_DDIT3:0.476867359596;EP300:0.475148334509;NKX2-3_NKX2-5:0.467659651033;MYB:0.444804343741;CDC5L:0.43509883783;FOX{I1,J2}:0.433953862538;NFIX:0.38270223454;VSX1,2:0.363939622374;TLX1..3_NFIC{dimer}:0.359398862564;ONECUT1,2:0.334672986986;PAX2:0.331986896371;OCT4_SOX2{dimer}:0.328161075061;POU2F1..3:0.318472112682;HNF1A:0.30428162132;RBPJ:0.286761144891;CUX2:0.23421584471;PRRX1,2:0.224688762959;SOX5:0.218917738511;POU3F1..4:0.218802663573;PITX1..3:0.20770767111;NKX3-2:0.207614217611;FOS_FOS{B,L1}_JUN{B,D}:0.206249887188;BACH2:0.189469624992;FOXP1:0.187362605152;ATF5_CREB3:0.178741867682;SREBF1,2:0.153814396129;NFIL3:0.14379560386;BPTF:0.14019853297;TEAD1:0.135189399465;MTF1:0.128655379924;TBX4,5:0.127535021715;STAT5{A,B}:0.118210746016;ATF4:0.11140834412;YY1:0.0994749717505;POU5F1:0.0964987247618;HOX{A5,B5}:0.0865411543307;PDX1:0.0853461567351;HLF:0.0791415575143;FOSL2:0.0717162156223;ELF1,2,4:0.0498186308618;NFE2:0.0326428549962;RORA:0.0288987982371;GATA6:0.0237487397436;ARID5B:0.00314890801124;MED-1{core}:-0.00764446939768;FOXN1:-0.00977966724344;NRF1:-0.015690400757;GTF2A1,2:-0.0184806771927;ALX1:-0.0197528153035;BREu{core}:-0.023616571347;TP53:-0.0269057082213;HBP1_HMGB_SSRP1_UBTF:-0.0304452783451;TEF:-0.0384590322228;T:-0.0648633637721;NFE2L2:-0.0702683211434;IRF1,2:-0.0751964324831;ZNF143:-0.111121759419;NKX6-1,2:-0.131638972859;FOX{D1,D2}:-0.141508674862;SP1:-0.148098159327;EN1,2:-0.168751654204;LHX3,4:-0.172834119341;HES1:-0.183674454499;HAND1,2:-0.198878739234;IKZF2:-0.201372330305;STAT2,4,6:-0.219993961854;JUN:-0.247720063848;ZNF423:-0.25220091248;SOX17:-0.263567506587;EVI1:-0.271240514054;NFKB1_REL_RELA:-0.272635260688;MYBL2:-0.291524714159;AHR_ARNT_ARNT2:-0.315835194153;PAX3,7:-0.32543063651;MTE{core}:-0.343582926473;EBF1:-0.364744821782;FOXO1,3,4:-0.365729914183;RFX1:-0.370110334972;RFX2..5_RFXANK_RFXAP:-0.373389765811;ETS1,2:-0.379223135312;ZBTB6:-0.387801768622;DMAP1_NCOR{1,2}_SMARC:-0.400862428424;MEF2{A,B,C,D}:-0.407045779963;ESR1:-0.433855185608;NKX2-1,4:-0.44168748726;NKX2-2,8:-0.445705412853;IKZF1:-0.456999779187;DBP:-0.468538797792;FOXP3:-0.47485292333;PAX4:-0.489019782394;SPIB:-0.494316601765;TFCP2:-0.518477954906;TBP:-0.526391119729;CRX:-0.532105848889;POU6F1:-0.536711541595;TOPORS:-0.542104398063;SPI1:-0.543853073238;PAX5:-0.54489082772;TAL1_TCF{3,4,12}:-0.551576646516;RXRA_VDR{dimer}:-0.56073291739;RUNX1..3:-0.565590541005;NHLH1,2:-0.586791178136;ATF2:-0.609302387568;AR:-0.609694318293;TFAP2B:-0.646088600132;UFEwm:-0.661992061642;ZBTB16:-0.665018553762;AIRE:-0.679213228942;NR1H4:-0.704780046789;GTF2I:-0.722540376828;CDX1,2,4:-0.739654400076;ALX4:-0.744109889732;ZFP161:-0.761500055524;FOXL1:-0.787611104794;PAX1,9:-0.802310545149;POU1F1:-0.829149420351;HOX{A4,D4}:-0.83807012061;REST:-0.861069959948;TLX2:-0.868459999702;HMGA1,2:-0.869938982606;NR3C1:-0.877614115293;NFE2L1:-0.882968403648;PAX6:-0.887078017805;CREB1:-0.896051625069;HIC1:-0.897636255153;HMX1:-0.916936105134;XBP1:-0.927851848888;PRDM1:-0.930130998046;HIF1A:-0.932736041391;MYFfamily:-0.96775619875;RREB1:-0.971055968632;EGR1..3:-0.974215461806;GLI1..3:-0.985879371809;STAT1,3:-1.00197846386;KLF4:-1.06017000389;NKX3-1:-1.06167674228;GFI1B:-1.06638030209;ATF6:-1.11028176012;NANOG{mouse}:-1.13397023979;TGIF1:-1.1639866259;PATZ1:-1.16922236774;GCM1,2:-1.17049654388;MAZ:-1.17650766966;TFAP4:-1.18027462669;GZF1:-1.21898373883;TFAP2{A,C}:-1.26294476329;GATA4:-1.31637788492;MAFB:-1.33160863098;SRF:-1.3345268852;SMAD1..7,9:-1.36046548784;HSF1,2:-1.38716509136;ZNF384:-1.39173290049;ZNF238:-1.39863846949;SPZ1:-1.43102981512;MZF1:-1.47422209486;NFATC1..3:-1.51865963244;ZIC1..3:-1.63661553763;HOXA9_MEIS1:-1.68925760158;RXR{A,B,G}:-1.76833544336 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10436-106E4;search_select_hide=table117:FF:10436-106E4 | |||
}} | }} | ||
Latest revision as of 14:02, 3 June 2020
| Name: | signet ring carcinoma cell line:Kato III |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10753 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10753
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10753
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.148 |
| 10 | 10 | 0.29 |
| 100 | 100 | 0.534 |
| 101 | 101 | 0.777 |
| 102 | 102 | 0.285 |
| 103 | 103 | 0.903 |
| 104 | 104 | 0.757 |
| 105 | 105 | 0.219 |
| 106 | 106 | 0.343 |
| 107 | 107 | 0.669 |
| 108 | 108 | 0.773 |
| 109 | 109 | 0.0124 |
| 11 | 11 | 0.343 |
| 110 | 110 | 0.152 |
| 111 | 111 | 0.935 |
| 112 | 112 | 0.943 |
| 113 | 113 | 0.257 |
| 114 | 114 | 0.755 |
| 115 | 115 | 0.794 |
| 116 | 116 | 0.289 |
| 117 | 117 | 0.107 |
| 118 | 118 | 0.332 |
| 119 | 119 | 0.195 |
| 12 | 12 | 0.149 |
| 120 | 120 | 0.467 |
| 121 | 121 | 0.667 |
| 122 | 122 | 0.0899 |
| 123 | 123 | 0.175 |
| 124 | 124 | 0.471 |
| 125 | 125 | 0.955 |
| 126 | 126 | 0.248 |
| 127 | 127 | 0.561 |
| 128 | 128 | 0.757 |
| 129 | 129 | 0.052 |
| 13 | 13 | 0.00268 |
| 130 | 130 | 0.681 |
| 131 | 131 | 0.127 |
| 132 | 132 | 0.972 |
| 133 | 133 | 0.0844 |
| 134 | 134 | 0.433 |
| 135 | 135 | 0.0352 |
| 136 | 136 | 0.443 |
| 137 | 137 | 0.872 |
| 138 | 138 | 0.614 |
| 139 | 139 | 0.32 |
| 14 | 14 | 0.721 |
| 140 | 140 | 0.228 |
| 141 | 141 | 0.391 |
| 142 | 142 | 0.118 |
| 143 | 143 | 0.379 |
| 144 | 144 | 0.0947 |
| 145 | 145 | 0.985 |
| 146 | 146 | 0.36 |
| 147 | 147 | 0.783 |
| 148 | 148 | 0.286 |
| 149 | 149 | 0.876 |
| 15 | 15 | 0.169 |
| 150 | 150 | 0.38 |
| 151 | 151 | 0.456 |
| 152 | 152 | 0.773 |
| 153 | 153 | 0.601 |
| 154 | 154 | 0.956 |
| 155 | 155 | 0.561 |
| 156 | 156 | 0.226 |
| 157 | 157 | 0.809 |
| 158 | 158 | 0.461 |
| 159 | 159 | 0.962 |
| 16 | 16 | 0.387 |
| 160 | 160 | 0.56 |
| 161 | 161 | 0.929 |
| 162 | 162 | 0.766 |
| 163 | 163 | 0.719 |
| 164 | 164 | 0.754 |
| 165 | 165 | 0.956 |
| 166 | 166 | 0.437 |
| 167 | 167 | 0.272 |
| 168 | 168 | 0.935 |
| 169 | 169 | 0.012 |
| 17 | 17 | 0.273 |
| 18 | 18 | 0.607 |
| 19 | 19 | 0.816 |
| 2 | 2 | 0.918 |
| 20 | 20 | 0.502 |
| 21 | 21 | 0.989 |
| 22 | 22 | 0.586 |
| 23 | 23 | 0.826 |
| 24 | 24 | 0.0901 |
| 25 | 25 | 0.454 |
| 26 | 26 | 0.032 |
| 27 | 27 | 0.921 |
| 28 | 28 | 0.504 |
| 29 | 29 | 0.183 |
| 3 | 3 | 0.665 |
| 30 | 30 | 0.758 |
| 31 | 31 | 0.915 |
| 32 | 32 | 0.0249 |
| 33 | 33 | 0.0591 |
| 34 | 34 | 0.591 |
| 35 | 35 | 0.721 |
| 36 | 36 | 0.0339 |
| 37 | 37 | 0.388 |
| 38 | 38 | 0.241 |
| 39 | 39 | 0.463 |
| 4 | 4 | 0.268 |
| 40 | 40 | 0.0203 |
| 41 | 41 | 0.219 |
| 42 | 42 | 0.547 |
| 43 | 43 | 0.484 |
| 44 | 44 | 0.816 |
| 45 | 45 | 0.976 |
| 46 | 46 | 0.489 |
| 47 | 47 | 0.0982 |
| 48 | 48 | 0.24 |
| 49 | 49 | 0.263 |
| 5 | 5 | 0.937 |
| 50 | 50 | 0.317 |
| 51 | 51 | 0.894 |
| 52 | 52 | 0.693 |
| 53 | 53 | 0.731 |
| 54 | 54 | 0.969 |
| 55 | 55 | 0.674 |
| 56 | 56 | 0.44 |
| 57 | 57 | 0.292 |
| 58 | 58 | 0.767 |
| 59 | 59 | 0.797 |
| 6 | 6 | 0.674 |
| 60 | 60 | 0.368 |
| 61 | 61 | 0.191 |
| 62 | 62 | 0.8 |
| 63 | 63 | 0.178 |
| 64 | 64 | 0.215 |
| 65 | 65 | 0.578 |
| 66 | 66 | 2.03208e-4 |
| 67 | 67 | 0.346 |
| 68 | 68 | 0.0176 |
| 69 | 69 | 0.0484 |
| 7 | 7 | 0.127 |
| 70 | 70 | 0.626 |
| 71 | 71 | 0.273 |
| 72 | 72 | 0.714 |
| 73 | 73 | 0.247 |
| 74 | 74 | 0.143 |
| 75 | 75 | 0.206 |
| 76 | 76 | 0.407 |
| 77 | 77 | 0.338 |
| 78 | 78 | 0.0385 |
| 79 | 79 | 0.0675 |
| 8 | 8 | 0.369 |
| 80 | 80 | 0.564 |
| 81 | 81 | 0.139 |
| 82 | 82 | 0.0373 |
| 83 | 83 | 0.524 |
| 84 | 84 | 0.414 |
| 85 | 85 | 0.228 |
| 86 | 86 | 0.974 |
| 87 | 87 | 0.0585 |
| 88 | 88 | 0.868 |
| 89 | 89 | 0.388 |
| 9 | 9 | 0.569 |
| 90 | 90 | 0.618 |
| 91 | 91 | 0.36 |
| 92 | 92 | 0.897 |
| 93 | 93 | 0.0937 |
| 94 | 94 | 0.611 |
| 95 | 95 | 0.0466 |
| 96 | 96 | 0.693 |
| 97 | 97 | 0.0681 |
| 98 | 98 | 0.109 |
| 99 | 99 | 0.717 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10753
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3493 signet ring cell adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101092 KATO-III cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
3493 (signet ring cell adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100787 (gastric cancer cell line sample)
0101092 (KATO-III cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
