FF:10434-106E2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005721 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007972;DRR008844;DRZ000269;DRZ001654;DRZ011619;DRZ013004 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:1749 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0102211,FF:0102027,FF:0102709 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120,FF:0102027 | |fonse_cell_line=FF:0101120,FF:0102027 | ||
|fonse_cell_line_closure=FF:0101120,FF:0102027 | |fonse_cell_line_closure=FF:0101120,FF:0102027 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10434-106E2 | |id=FF:10434-106E2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102211 | ||
|is_obsolete= | |||
|library_id=CNhs10752 | |||
|library_id_phase_based=2:CNhs10752 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10434 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10434 | |||
|name=oral squamous cell carcinoma cell line:Ca9-22 | |name=oral squamous cell carcinoma cell line:Ca9-22 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10752,LSID692,release008,COMPLETED | |profile_hcage=CNhs10752,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0203303818124329,0,0,0,0,0.0407747933204421,0.0406607636248659,-0.27483329820609,-0.262073178764509,0,0,0,0,0,0,0,0,0,0,0.201092823406828,0,0,-0.0754845641281957,0,0,0,0.434016461192995,0,-0.0979578962680575,0,0,-0.0922958261539964,0,0,0,0,0,0,0,0,0,0,0.778551604270631,0,-0.217482067019541,0,0,0,0.393086373736574,0,0,0,0,0.0476967512914908,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.0464799175955532,0.0406607636248659,0,0,0,0,0,0,0,0,0,0,0,0,0.112082983474334,0,0,0,0,0.0203303818124329,0,0.0259419936851222,0,0,0,0,0,0,0,0.264425645376092,-0.0234508201905628,0,0,0.0203303818124329,0.201092823406828,0.0457881935709438,-0.118146818988462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.076043212110028,0,0,0,-0.147082246353476,-0.265604379236174,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0406607636248659,0.0457881935709438,0,0.201092823406828,0.112082983474334,0.0406607636248659,0,0,0,0.14382354480865,0,0,0,-0.206518111660699,0,-0.136073685003647,0.463143402497726,0.0203303818124329,0,-0.138567879982352,0,0.0406607636248659,0,0,0,0,0,0,0.112082983474334,0.247373298058047,0,-0.00975178796444905,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.0484168422030194,0.228644815097663,0,0,0,0,0.0372463734880618,0,0.0229440610149096,0.0611033764852329,0.42207942254058,-0.367780524153964,0.117688997922135,0,0,0,-0.267201072349703,0.517803452836364,0,0,-0.121779851751874,-0.0946488712090005,0,0,-0.391044581551635,0,-0.191915197654817,-0.0215205187867544,0,-0.00346618952138714,0,0,0,0,0,0,0,0,0,0.0203303818124329,0,-0.0574934668214365,0.144736366646883,0,0.173401494703317,0.606658545021198,0,0.0856167712908933,0,0.0406607636248659,-0.0161290987084571,-0.0509819380284999,0.018728389924918,-0.0070610455855058,0,0.235893998633823,0.006210656427564,-0.095299118908336,0.38840049710809,-0.147401849371139,0.0111111038569809,0,-0.152106160270211,-0.1298564572369,0.129183993176739,-0.114291571104364,-0.0171657985420337,-0.135079689820582,0.165657693998154,0,0.14382354480865,0,0.288146388236811,0.0119705730135969,0.112082983474334,-0.0481590908030496,0.0461896994957674,-0.174698388622833,0.624643172877602,0.257465201831126,-0.691796047417642,-0.0395325284566706,-0.139451443426854,-0.011905660463696,-0.126015204529927,0,0,0,0.0565020741207729,0.136350213954842,-0.0420108187550073,0,-0.483977461810981,-0.0683442610773682,0,-0.475885735651344,-0.112196104912798,0,0,-0.121681914519738,0.0406607636248659,0,0.0778384462202319,0,0,0.202813349459943,0.161562368171803,-0.120772578081211,0.00128875033788212,0.0559584928261625,0.0552517063649405,-0.0474940965354833,0,-0.0947540592910717,0,0.113215341564912,0.20127024816024,0.00768735775999074,0.28796852319814,0.325367440073099,-0.0871522501187709,-0.0469016403811256,-0.0584468268118252,0.0262471075217895,-0.146089167575801,0.264425645376092,-0.0552093043581043,0.0507322708240437,-0.0474660688504219,0,-0.266468153138977,-0.0728395866003264,0.0524176169299726,0.143016974746886,0,-0.186249882348501,0,-0.533903801166321,0,-0.12324708936935,-0.265507450059532,-0.265887879877369,-0.128083273073821,0.00162418748554727,0.15242264933026,0.00438885534388544,0,0.282689738447117,0,0,-0.150367083334639,0.192847586339748,0.150053272744827,0.020003048055676,0,0.121864512315909,0,0,0.093162794745042,-0.0343832143575605,0,-0.0545294866641765,-0.233709749202784,-0.14712072484362,-0.115971073434934,0.0406607636248659,0,0.281630321019544,0,0,0.279096269688419,0,0.35971276425974,-0.109502796678106,0.0355805866387219,0.226170512420393,0,0,0.0235650574416525,0,-0.0263610675477001,0,0,0.100457098921694,0.158298188423575,0,0,0.0778384462202319,0.0257121212790977,0,0,0,0,0,0,0,-0.16865091461244,0.0206598347941639,0,0.0220812146431912,0,0,0,0,0.112082983474334,0.0194875031446858,0,0,0.475894379612152,-0.0477497222237598,0.194967593793321,0.100546411703414,0,0.0203303818124329,0,0.0812656736215565,0.335047163549013,0.0406607636248659,0.0692301169091965,0.0778384462202319,0,0.0406607636248659,0,0.0259419936851222,0,0,0,0.092242154216758,-0.0170696934287981,-0.231179819056857,0,0,0,-0.236293637976925,0,0,0,0,-0.162060943965871,0,0,0.167408776692475,0,-0.0798611136779486,0.25643065420152,0,-0.013764217214523,-0.148642514469468,0.430594230558386,0,0.317985009469741,0.323694198058026,0,0.00453550780616137,0.0671604952040878,-0.0823702229656663,0,0.0393405749408585,0,0,0,0,0.205556787393821,0,-0.136476066179524,0,0,0,0,0,0.0406607636248659,0,0,0,0,0,-0.216369717970794,-0.0143856104382785,0.251682437892981,0,0,0,0.14382354480865,0,0,0.047805749325422,0.192369461684914,0,0,0,0,0,0,0,0,-0.0614313948723539,0,0,0,0,0,-0.0969923612426051,0,0.0778384462202319,0,0.0406607636248659,-0.524146357529018,0,0,-0.0762693087866858,0,0,0,0,0,0,0.0406607636248659,0,0,0,0.00444594126838422,0,0,-0.0454806398152158,-0.475883594101508,0,0.0778384462202319,0,0,0,0.0406607636248659,0,-0.27483329820609,0,0,0.0406607636248659,0,-0.113884373708977,0,0,0,0.408074377339238,0,0.0407747933204421,0,0.0406607636248659,0,0,0,0.173401494703317,0.071911772404325,0.0203303818124329,0,0,0,0,0,0.173401494703317,0,0,0,0,0,0,0,0.112018162719218,0,-0.246546752348044,-0.0991824537163362,0,0,0.00323412902988421,0,0,0,0,0,0,0.0075787990815889,0,0,0,0,0,0,0,0.0203303818124329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0211834479320784,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.151755264441947,0,0,0.0406607636248659,0.00981571966939886,0.0406607636248659,0,0.213336427506623,0.0875442887686575,0.0463615527898604,0,0,0,-0.054385572482455,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0754845641281957,0,0,0,0,0,0,0,0,0,0,0,0,0.158992504734871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0406607636248659,0,0,0,0,0,0,0.135592049921735,0.14382354480865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.056041491737167,0,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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin=10 | |rna_rin=10 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+04 | ||
|rna_weight_ug=50.47775 | |rna_weight_ug=50.47775 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1976 | |sample_cell_catalog=RCB1976 | ||
|sample_cell_line=Ca9-22 | |sample_cell_line=Ca9-22 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.70882860811236e-234!GO:0005737;cytoplasm;2.11531673636828e-186!GO:0043226;organelle;1.6052151288926e-182!GO:0043229;intracellular organelle;4.67928689756379e-182!GO:0043227;membrane-bound organelle;8.62243570390258e-173!GO:0043231;intracellular membrane-bound organelle;8.62243570390258e-173!GO:0044422;organelle part;1.31938431090607e-142!GO:0044446;intracellular organelle part;1.04652926082735e-140!GO:0044444;cytoplasmic part;7.73215690301236e-124!GO:0032991;macromolecular complex;8.58567969416496e-96!GO:0044237;cellular metabolic process;1.23788888875658e-81!GO:0044238;primary metabolic process;7.0378733226716e-81!GO:0030529;ribonucleoprotein complex;1.92780710840861e-76!GO:0003723;RNA binding;6.23680784902646e-73!GO:0043170;macromolecule metabolic process;1.61411714220714e-72!GO:0043233;organelle lumen;1.3587117616728e-71!GO:0031974;membrane-enclosed lumen;1.3587117616728e-71!GO:0044428;nuclear part;2.78121998585943e-69!GO:0005634;nucleus;2.64811113106373e-68!GO:0005515;protein binding;3.98214692685283e-68!GO:0005739;mitochondrion;1.14648330410711e-56!GO:0019538;protein metabolic process;2.572382933795e-53!GO:0043234;protein complex;1.79913490265311e-50!GO:0031090;organelle membrane;1.44966695909383e-49!GO:0044267;cellular protein metabolic process;9.51406096152581e-48!GO:0044260;cellular macromolecule metabolic process;2.52575760283571e-47!GO:0005840;ribosome;5.50123682088667e-47!GO:0006396;RNA processing;6.4556795957754e-47!GO:0006412;translation;9.17981381179718e-47!GO:0031981;nuclear lumen;2.14741275879526e-44!GO:0016043;cellular component organization and biogenesis;2.77936497014028e-43!GO:0043283;biopolymer metabolic process;6.26482037172681e-42!GO:0033036;macromolecule localization;9.11623869792586e-42!GO:0015031;protein transport;1.7874993551172e-41!GO:0009058;biosynthetic process;3.56497308360694e-41!GO:0003735;structural constituent of ribosome;1.53716294112852e-40!GO:0005829;cytosol;2.48635178002059e-39!GO:0044249;cellular biosynthetic process;4.66530985343288e-39!GO:0008104;protein localization;1.41839320520969e-37!GO:0045184;establishment of protein localization;2.31330227577023e-37!GO:0016071;mRNA metabolic process;4.83599287360147e-37!GO:0043228;non-membrane-bound organelle;3.11683949120922e-36!GO:0043232;intracellular non-membrane-bound organelle;3.11683949120922e-36!GO:0033279;ribosomal subunit;2.41469929187565e-35!GO:0009059;macromolecule biosynthetic process;6.31795657846126e-35!GO:0044429;mitochondrial part;8.12566984181122e-35!GO:0010467;gene expression;1.61674908981112e-33!GO:0008380;RNA splicing;2.94041546276311e-32!GO:0031967;organelle envelope;3.49770651414081e-32!GO:0006397;mRNA processing;6.60832824447627e-32!GO:0031975;envelope;7.3461439949778e-32!GO:0046907;intracellular transport;1.25020842330962e-31!GO:0065003;macromolecular complex assembly;2.19476987805391e-31!GO:0006996;organelle organization and biogenesis;2.93673073127908e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.23889597318147e-30!GO:0005654;nucleoplasm;3.01587619677097e-28!GO:0006886;intracellular protein transport;7.53850076269482e-28!GO:0000166;nucleotide binding;9.9829690820127e-28!GO:0022607;cellular component assembly;1.8540190314896e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.58075313981147e-27!GO:0006259;DNA metabolic process;2.02417212396327e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.14778452277206e-26!GO:0012505;endomembrane system;3.96335391367443e-24!GO:0044451;nucleoplasm part;5.74570147545177e-23!GO:0005681;spliceosome;1.70698354412385e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.60949336548815e-22!GO:0016462;pyrophosphatase activity;5.8715787761364e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.8856323768526e-22!GO:0044445;cytosolic part;1.36645990118588e-21!GO:0016874;ligase activity;2.05686519274755e-21!GO:0005783;endoplasmic reticulum;2.95844482594005e-21!GO:0017111;nucleoside-triphosphatase activity;3.61554883940192e-21!GO:0051641;cellular localization;1.63902868701832e-20!GO:0051649;establishment of cellular localization;1.64316804142718e-20!GO:0006512;ubiquitin cycle;3.81805911755423e-20!GO:0007049;cell cycle;5.27175618967651e-20!GO:0005740;mitochondrial envelope;6.51643592563646e-20!GO:0006457;protein folding;1.62251217239441e-19!GO:0031966;mitochondrial membrane;2.23186443569978e-19!GO:0015935;small ribosomal subunit;3.01379085173237e-19!GO:0006119;oxidative phosphorylation;3.18578714114067e-19!GO:0032553;ribonucleotide binding;4.07236445799339e-19!GO:0032555;purine ribonucleotide binding;4.07236445799339e-19!GO:0017076;purine nucleotide binding;4.94917998662777e-19!GO:0019866;organelle inner membrane;6.09100379010191e-19!GO:0043412;biopolymer modification;7.39771450089639e-19!GO:0003676;nucleic acid binding;7.99370911099133e-19!GO:0043285;biopolymer catabolic process;2.80515993401791e-18!GO:0044265;cellular macromolecule catabolic process;3.19438017970786e-18!GO:0044432;endoplasmic reticulum part;4.0095547558436e-18!GO:0031980;mitochondrial lumen;5.37843784007894e-18!GO:0005759;mitochondrial matrix;5.37843784007894e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;6.60630467292937e-18!GO:0005730;nucleolus;7.38665268264621e-18!GO:0019941;modification-dependent protein catabolic process;1.29638155875145e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.29638155875145e-17!GO:0044257;cellular protein catabolic process;1.4531877367013e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.19064946371886e-17!GO:0048770;pigment granule;2.89107446141363e-17!GO:0042470;melanosome;2.89107446141363e-17!GO:0005743;mitochondrial inner membrane;3.60166679236126e-17!GO:0008134;transcription factor binding;3.79770130121763e-17!GO:0005524;ATP binding;4.52071030479138e-17!GO:0015934;large ribosomal subunit;4.6089024517883e-17!GO:0032559;adenyl ribonucleotide binding;7.83508378676768e-17!GO:0022618;protein-RNA complex assembly;1.25869308252438e-16!GO:0030554;adenyl nucleotide binding;1.40276027928148e-16!GO:0009057;macromolecule catabolic process;2.0595364509858e-16!GO:0006464;protein modification process;2.80463130842153e-16!GO:0008135;translation factor activity, nucleic acid binding;8.01752120859723e-16!GO:0005794;Golgi apparatus;8.72593216866337e-16!GO:0030163;protein catabolic process;1.01199021252479e-15!GO:0006974;response to DNA damage stimulus;1.6399168350993e-15!GO:0044248;cellular catabolic process;5.15904953896628e-15!GO:0044455;mitochondrial membrane part;5.7079485778682e-15!GO:0043687;post-translational protein modification;5.75979875716466e-15!GO:0000502;proteasome complex (sensu Eukaryota);6.26546127892694e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.68801823027315e-14!GO:0006605;protein targeting;1.93738459872152e-14!GO:0022402;cell cycle process;3.2000707892674e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.63459353615765e-14!GO:0051082;unfolded protein binding;5.13158147629357e-14!GO:0005789;endoplasmic reticulum membrane;1.18366924133921e-13!GO:0016192;vesicle-mediated transport;1.58606359521263e-13!GO:0051276;chromosome organization and biogenesis;1.788254918851e-13!GO:0016070;RNA metabolic process;2.0059896059895e-13!GO:0016887;ATPase activity;2.50086742312175e-13!GO:0005761;mitochondrial ribosome;4.97776029190596e-13!GO:0000313;organellar ribosome;4.97776029190596e-13!GO:0000278;mitotic cell cycle;7.37398475919233e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.28335420663307e-12!GO:0006281;DNA repair;1.28335420663307e-12!GO:0005635;nuclear envelope;1.58500907824391e-12!GO:0048193;Golgi vesicle transport;1.58500907824391e-12!GO:0042623;ATPase activity, coupled;1.79848805550786e-12!GO:0005746;mitochondrial respiratory chain;1.81250848367778e-12!GO:0051186;cofactor metabolic process;2.06483265240898e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.48296371685678e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.91318128153254e-12!GO:0003743;translation initiation factor activity;3.61597223185481e-12!GO:0031965;nuclear membrane;4.2866149975106e-12!GO:0005694;chromosome;6.67888723343894e-12!GO:0006323;DNA packaging;9.45454538432494e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19539773225115e-11!GO:0000375;RNA splicing, via transesterification reactions;1.19539773225115e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19539773225115e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.19539773225115e-11!GO:0003954;NADH dehydrogenase activity;1.19539773225115e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19539773225115e-11!GO:0042254;ribosome biogenesis and assembly;1.40172291226101e-11!GO:0009719;response to endogenous stimulus;1.51750445916599e-11!GO:0006399;tRNA metabolic process;2.50676782404065e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.17070364348653e-11!GO:0004386;helicase activity;3.51817424380526e-11!GO:0016604;nuclear body;3.86154703262794e-11!GO:0006366;transcription from RNA polymerase II promoter;6.77398545873822e-11!GO:0044453;nuclear membrane part;7.55557002618462e-11!GO:0006732;coenzyme metabolic process;1.31794982487851e-10!GO:0012501;programmed cell death;1.36757606594765e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.44208707768314e-10!GO:0008639;small protein conjugating enzyme activity;2.25731242825556e-10!GO:0006413;translational initiation;2.27817547868097e-10!GO:0009055;electron carrier activity;2.31345916922568e-10!GO:0006915;apoptosis;2.65356265393937e-10!GO:0044427;chromosomal part;3.29124487683237e-10!GO:0006913;nucleocytoplasmic transport;3.61575215646178e-10!GO:0004842;ubiquitin-protein ligase activity;4.08046632505917e-10!GO:0019787;small conjugating protein ligase activity;4.13073486275608e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.21156901261285e-10!GO:0003712;transcription cofactor activity;5.27101786717512e-10!GO:0042775;organelle ATP synthesis coupled electron transport;5.44761630854117e-10!GO:0042773;ATP synthesis coupled electron transport;5.44761630854117e-10!GO:0051169;nuclear transport;6.71139709121848e-10!GO:0008026;ATP-dependent helicase activity;8.16108548835366e-10!GO:0030964;NADH dehydrogenase complex (quinone);8.88193027778327e-10!GO:0045271;respiratory chain complex I;8.88193027778327e-10!GO:0005747;mitochondrial respiratory chain complex I;8.88193027778327e-10!GO:0006461;protein complex assembly;1.07439986350639e-09!GO:0008565;protein transporter activity;1.31048517239715e-09!GO:0008219;cell death;1.38625858326386e-09!GO:0016265;death;1.38625858326386e-09!GO:0005768;endosome;1.5008716759856e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.971511184976e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.971511184976e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.971511184976e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.97234263884013e-09!GO:0016881;acid-amino acid ligase activity;2.14394037420248e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.16889236928054e-09!GO:0016607;nuclear speck;3.48758454212184e-09!GO:0009056;catabolic process;3.51202120285592e-09!GO:0006446;regulation of translational initiation;4.8153650744165e-09!GO:0005643;nuclear pore;4.89224938911652e-09!GO:0043038;amino acid activation;4.92340329666227e-09!GO:0006418;tRNA aminoacylation for protein translation;4.92340329666227e-09!GO:0043039;tRNA aminoacylation;4.92340329666227e-09!GO:0048475;coated membrane;5.11595776157617e-09!GO:0030117;membrane coat;5.11595776157617e-09!GO:0051188;cofactor biosynthetic process;5.54994407768804e-09!GO:0000087;M phase of mitotic cell cycle;6.57521406203801e-09!GO:0006403;RNA localization;7.3250865908552e-09!GO:0050657;nucleic acid transport;7.39133289013893e-09!GO:0051236;establishment of RNA localization;7.39133289013893e-09!GO:0050658;RNA transport;7.39133289013893e-09!GO:0000074;regulation of progression through cell cycle;9.7208609049803e-09!GO:0051726;regulation of cell cycle;1.12037691049283e-08!GO:0016787;hydrolase activity;1.29586637186629e-08!GO:0007067;mitosis;1.36608691444513e-08!GO:0015986;ATP synthesis coupled proton transport;1.41382640057734e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.41382640057734e-08!GO:0022403;cell cycle phase;1.94317643266794e-08!GO:0009259;ribonucleotide metabolic process;2.05603159451294e-08!GO:0005793;ER-Golgi intermediate compartment;2.09219010894819e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.99124823084601e-08!GO:0006163;purine nucleotide metabolic process;5.28570208964308e-08!GO:0006260;DNA replication;5.34944396785664e-08!GO:0065004;protein-DNA complex assembly;5.47200665499629e-08!GO:0000785;chromatin;6.42002575088079e-08!GO:0019829;cation-transporting ATPase activity;6.61343074769741e-08!GO:0006164;purine nucleotide biosynthetic process;8.3383911524748e-08!GO:0006333;chromatin assembly or disassembly;9.02094368698242e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.14442435881682e-08!GO:0009260;ribonucleotide biosynthetic process;9.46754517862457e-08!GO:0016568;chromatin modification;9.71048594956153e-08!GO:0009108;coenzyme biosynthetic process;1.10221805890774e-07!GO:0009150;purine ribonucleotide metabolic process;1.28355994845666e-07!GO:0006793;phosphorus metabolic process;1.70082117608826e-07!GO:0006796;phosphate metabolic process;1.70082117608826e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.97349801848139e-07!GO:0006754;ATP biosynthetic process;2.03411680715759e-07!GO:0006753;nucleoside phosphate metabolic process;2.03411680715759e-07!GO:0032446;protein modification by small protein conjugation;2.0845265402427e-07!GO:0065002;intracellular protein transport across a membrane;2.16533526402948e-07!GO:0005667;transcription factor complex;2.23199100691835e-07!GO:0017038;protein import;2.39777197526984e-07!GO:0016567;protein ubiquitination;2.61788276019844e-07!GO:0051301;cell division;2.71267262272727e-07!GO:0030120;vesicle coat;2.86834313978258e-07!GO:0030662;coated vesicle membrane;2.86834313978258e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.35054894511593e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.75710773909522e-07!GO:0046930;pore complex;4.08696212600933e-07!GO:0016740;transferase activity;4.33035498110973e-07!GO:0006364;rRNA processing;4.77416425473804e-07!GO:0006752;group transfer coenzyme metabolic process;5.10080822684341e-07!GO:0051028;mRNA transport;5.54721836401868e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.70008971681972e-07!GO:0016072;rRNA metabolic process;6.42831178880622e-07!GO:0046034;ATP metabolic process;6.61547325764661e-07!GO:0016563;transcription activator activity;6.68932889423598e-07!GO:0048523;negative regulation of cellular process;6.73152044253085e-07!GO:0044431;Golgi apparatus part;7.39865412460893e-07!GO:0003924;GTPase activity;1.1410045429941e-06!GO:0044440;endosomal part;1.14853302257382e-06!GO:0010008;endosome membrane;1.14853302257382e-06!GO:0009141;nucleoside triphosphate metabolic process;1.22550268296921e-06!GO:0015630;microtubule cytoskeleton;1.25104886194741e-06!GO:0008654;phospholipid biosynthetic process;1.28212916286684e-06!GO:0051246;regulation of protein metabolic process;1.45230902993416e-06!GO:0043566;structure-specific DNA binding;1.45230902993416e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.62144003534117e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.62144003534117e-06!GO:0000151;ubiquitin ligase complex;1.65415209570623e-06!GO:0000279;M phase;1.95035660585781e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.01965758218918e-06!GO:0009060;aerobic respiration;2.0876963466978e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.19001443492716e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.19001443492716e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.49095155709787e-06!GO:0045786;negative regulation of progression through cell cycle;2.49943528819361e-06!GO:0007005;mitochondrion organization and biogenesis;2.76689888883932e-06!GO:0016310;phosphorylation;3.33925803369815e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.3578633171025e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.3578633171025e-06!GO:0045259;proton-transporting ATP synthase complex;3.4853418823707e-06!GO:0043067;regulation of programmed cell death;3.68754722414873e-06!GO:0042981;regulation of apoptosis;4.29961780266047e-06!GO:0003713;transcription coactivator activity;4.81235398958045e-06!GO:0005813;centrosome;5.1464655741153e-06!GO:0031324;negative regulation of cellular metabolic process;5.88074118129338e-06!GO:0005798;Golgi-associated vesicle;5.88074118129338e-06!GO:0005788;endoplasmic reticulum lumen;6.03553064763506e-06!GO:0043623;cellular protein complex assembly;6.10316575269235e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.42428493533035e-06!GO:0003697;single-stranded DNA binding;8.17671282596139e-06!GO:0003724;RNA helicase activity;8.82150054417785e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.108471168186e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.24031744038146e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.24031744038146e-05!GO:0048519;negative regulation of biological process;1.35194304041878e-05!GO:0005770;late endosome;1.37623908722959e-05!GO:0000245;spliceosome assembly;1.64110917302527e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.64583958837947e-05!GO:0006613;cotranslational protein targeting to membrane;1.65656268045989e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.69113720041181e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.78902347462542e-05!GO:0031988;membrane-bound vesicle;1.79540921554446e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.82568440585423e-05!GO:0051427;hormone receptor binding;1.87558868200966e-05!GO:0005815;microtubule organizing center;2.05359587835473e-05!GO:0016779;nucleotidyltransferase activity;2.21690823596586e-05!GO:0009117;nucleotide metabolic process;2.25368507335745e-05!GO:0045333;cellular respiration;2.37452287951634e-05!GO:0006099;tricarboxylic acid cycle;2.58899400735272e-05!GO:0046356;acetyl-CoA catabolic process;2.58899400735272e-05!GO:0004298;threonine endopeptidase activity;2.87962177546207e-05!GO:0051168;nuclear export;2.91075730982758e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.13945800530885e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.29769140333504e-05!GO:0006606;protein import into nucleus;3.45027089313133e-05!GO:0006084;acetyl-CoA metabolic process;3.71374058209861e-05!GO:0035257;nuclear hormone receptor binding;3.94519451502718e-05!GO:0000139;Golgi membrane;4.05237980185317e-05!GO:0031497;chromatin assembly;4.19458183061928e-05!GO:0006334;nucleosome assembly;4.39850759689289e-05!GO:0005769;early endosome;4.89936187087342e-05!GO:0016564;transcription repressor activity;5.05867954273345e-05!GO:0019899;enzyme binding;5.09375810522095e-05!GO:0048471;perinuclear region of cytoplasm;5.67101472325436e-05!GO:0005773;vacuole;5.75088284621075e-05!GO:0051170;nuclear import;6.16658801890998e-05!GO:0030118;clathrin coat;6.36754482007758e-05!GO:0009892;negative regulation of metabolic process;6.41965935917265e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.59118747346227e-05!GO:0051329;interphase of mitotic cell cycle;6.68044556739569e-05!GO:0005525;GTP binding;6.86450429058607e-05!GO:0042802;identical protein binding;7.24276160731445e-05!GO:0016491;oxidoreductase activity;8.23059792418116e-05!GO:0031252;leading edge;9.38647146815416e-05!GO:0016853;isomerase activity;9.50480313487469e-05!GO:0007264;small GTPase mediated signal transduction;0.000103797206435565!GO:0031982;vesicle;0.000106573268939174!GO:0005819;spindle;0.000108754745635193!GO:0003690;double-stranded DNA binding;0.000112759519146749!GO:0043021;ribonucleoprotein binding;0.000120452425778859!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000124590994554283!GO:0007243;protein kinase cascade;0.000129919100518195!GO:0006612;protein targeting to membrane;0.000133995195541499!GO:0050794;regulation of cellular process;0.000135493607542622!GO:0005762;mitochondrial large ribosomal subunit;0.000138553426260545!GO:0000315;organellar large ribosomal subunit;0.000138553426260545!GO:0030119;AP-type membrane coat adaptor complex;0.000143678289089287!GO:0033116;ER-Golgi intermediate compartment membrane;0.000149069316674632!GO:0019843;rRNA binding;0.000177677412326691!GO:0045454;cell redox homeostasis;0.000178480180191123!GO:0030867;rough endoplasmic reticulum membrane;0.000178672447539529!GO:0031410;cytoplasmic vesicle;0.000190017044939069!GO:0043069;negative regulation of programmed cell death;0.000193255383844133!GO:0009109;coenzyme catabolic process;0.000193739889403333!GO:0000323;lytic vacuole;0.00020329414290351!GO:0005764;lysosome;0.00020329414290351!GO:0003729;mRNA binding;0.000203490710521173!GO:0003899;DNA-directed RNA polymerase activity;0.000210931563371547!GO:0046467;membrane lipid biosynthetic process;0.000212234754047514!GO:0015631;tubulin binding;0.000225846537913244!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000230164910736127!GO:0015399;primary active transmembrane transporter activity;0.000230164910736127!GO:0008250;oligosaccharyl transferase complex;0.000245644134037382!GO:0006402;mRNA catabolic process;0.000249529370565936!GO:0030131;clathrin adaptor complex;0.000256318496632486!GO:0005048;signal sequence binding;0.000265069665832653!GO:0008186;RNA-dependent ATPase activity;0.000269821041086266!GO:0004576;oligosaccharyl transferase activity;0.000273082867526419!GO:0016481;negative regulation of transcription;0.000282858713334341!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000306048383103089!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000364432131135497!GO:0004674;protein serine/threonine kinase activity;0.00039009794862106!GO:0043066;negative regulation of apoptosis;0.000393925013000916!GO:0008610;lipid biosynthetic process;0.00039812743103306!GO:0016197;endosome transport;0.000399738167979536!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000408723926083314!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000419683756182483!GO:0000314;organellar small ribosomal subunit;0.000432826768492804!GO:0005763;mitochondrial small ribosomal subunit;0.000432826768492804!GO:0051325;interphase;0.000436957541872572!GO:0006261;DNA-dependent DNA replication;0.000443756223149444!GO:0048522;positive regulation of cellular process;0.000443756223149444!GO:0051187;cofactor catabolic process;0.000483909574660705!GO:0008033;tRNA processing;0.000500304145212341!GO:0016859;cis-trans isomerase activity;0.000505178875050207!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000521669938953416!GO:0006916;anti-apoptosis;0.000525214036662205!GO:0006091;generation of precursor metabolites and energy;0.000556161716737681!GO:0046489;phosphoinositide biosynthetic process;0.000630531628457852!GO:0045893;positive regulation of transcription, DNA-dependent;0.000632318975831375!GO:0007051;spindle organization and biogenesis;0.00064576100543946!GO:0019752;carboxylic acid metabolic process;0.000659243692027668!GO:0065009;regulation of a molecular function;0.000702823799506528!GO:0051789;response to protein stimulus;0.000704248428514927!GO:0006986;response to unfolded protein;0.000704248428514927!GO:0003714;transcription corepressor activity;0.000749477847626805!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000767385873334698!GO:0006082;organic acid metabolic process;0.000772348372569772!GO:0004004;ATP-dependent RNA helicase activity;0.000794415720717445!GO:0032561;guanyl ribonucleotide binding;0.000814610683886789!GO:0019001;guanyl nucleotide binding;0.000814610683886789!GO:0006401;RNA catabolic process;0.000821897370038548!GO:0030880;RNA polymerase complex;0.000835522775037251!GO:0003682;chromatin binding;0.000868318640002416!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000869146750024393!GO:0046474;glycerophospholipid biosynthetic process;0.000885737686867533!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000914787869273949!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000945853914105247!GO:0051920;peroxiredoxin activity;0.000989100512203822!GO:0031072;heat shock protein binding;0.00108027689675348!GO:0046483;heterocycle metabolic process;0.00110325333539063!GO:0009967;positive regulation of signal transduction;0.00114431758242502!GO:0006352;transcription initiation;0.0012234960319563!GO:0018196;peptidyl-asparagine modification;0.00129458651606748!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00129458651606748!GO:0006520;amino acid metabolic process;0.00143185664759825!GO:0030658;transport vesicle membrane;0.00163184904962661!GO:0044452;nucleolar part;0.00164492378016378!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00164492378016378!GO:0000428;DNA-directed RNA polymerase complex;0.00164492378016378!GO:0051252;regulation of RNA metabolic process;0.00167901204554275!GO:0005885;Arp2/3 protein complex;0.00170290948055626!GO:0043624;cellular protein complex disassembly;0.00173548241708679!GO:0030176;integral to endoplasmic reticulum membrane;0.00175932135409255!GO:0008632;apoptotic program;0.00181691126469858!GO:0019867;outer membrane;0.00190761303242363!GO:0031968;organelle outer membrane;0.00200998250166109!GO:0016251;general RNA polymerase II transcription factor activity;0.00201441716959128!GO:0016363;nuclear matrix;0.00207528834495314!GO:0045941;positive regulation of transcription;0.00220182784799347!GO:0000049;tRNA binding;0.00220182784799347!GO:0050662;coenzyme binding;0.00220711375596718!GO:0006302;double-strand break repair;0.00234084266695014!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00239673581860448!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00239673581860448!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00239673581860448!GO:0006818;hydrogen transport;0.00246141660758479!GO:0030384;phosphoinositide metabolic process;0.00246141660758479!GO:0008017;microtubule binding;0.00248153005680538!GO:0008652;amino acid biosynthetic process;0.00249588467616055!GO:0009112;nucleobase metabolic process;0.00250124002961251!GO:0030132;clathrin coat of coated pit;0.00266462404352097!GO:0043492;ATPase activity, coupled to movement of substances;0.00270209791643923!GO:0015992;proton transport;0.00270209791643923!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00274123314791436!GO:0006650;glycerophospholipid metabolic process;0.00274973985608026!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00283627247741306!GO:0048500;signal recognition particle;0.00284413809708887!GO:0001726;ruffle;0.00290436103819128!GO:0030133;transport vesicle;0.00290548067878363!GO:0006414;translational elongation;0.00290739103589688!GO:0006891;intra-Golgi vesicle-mediated transport;0.00315707112958599!GO:0016791;phosphoric monoester hydrolase activity;0.00347620528918582!GO:0032984;macromolecular complex disassembly;0.00353304731724147!GO:0006405;RNA export from nucleus;0.00353598465207004!GO:0005905;coated pit;0.00365791905745417!GO:0051087;chaperone binding;0.0037361536073781!GO:0000082;G1/S transition of mitotic cell cycle;0.00382573083228667!GO:0008092;cytoskeletal protein binding;0.00382573083228667!GO:0007010;cytoskeleton organization and biogenesis;0.00413768010579193!GO:0005791;rough endoplasmic reticulum;0.00415792288804511!GO:0030036;actin cytoskeleton organization and biogenesis;0.00416783722750841!GO:0000775;chromosome, pericentric region;0.00420481312874318!GO:0012506;vesicle membrane;0.00429187123546444!GO:0048487;beta-tubulin binding;0.0043037597333606!GO:0005741;mitochondrial outer membrane;0.00466026261303458!GO:0030660;Golgi-associated vesicle membrane;0.00467444979290435!GO:0035258;steroid hormone receptor binding;0.00474718524415045!GO:0000786;nucleosome;0.00480345606291634!GO:0030663;COPI coated vesicle membrane;0.00482293854839758!GO:0030126;COPI vesicle coat;0.00482293854839758!GO:0030134;ER to Golgi transport vesicle;0.00484551497349125!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00496144773304729!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00496144773304729!GO:0030659;cytoplasmic vesicle membrane;0.00504760112528678!GO:0015980;energy derivation by oxidation of organic compounds;0.00507100492221325!GO:0007040;lysosome organization and biogenesis;0.0051858673680022!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00520978010070329!GO:0051052;regulation of DNA metabolic process;0.0053021088788765!GO:0003702;RNA polymerase II transcription factor activity;0.00530618197916168!GO:0003711;transcription elongation regulator activity;0.00547493679952052!GO:0005657;replication fork;0.00547692998537034!GO:0043488;regulation of mRNA stability;0.00553964379076021!GO:0043487;regulation of RNA stability;0.00553964379076021!GO:0003684;damaged DNA binding;0.00554068633673478!GO:0043241;protein complex disassembly;0.00566925020521153!GO:0007033;vacuole organization and biogenesis;0.00569726607706507!GO:0045792;negative regulation of cell size;0.00577513320407932!GO:0007242;intracellular signaling cascade;0.00579647250823418!GO:0016044;membrane organization and biogenesis;0.0058269663927717!GO:0022890;inorganic cation transmembrane transporter activity;0.00588730777561724!GO:0006383;transcription from RNA polymerase III promoter;0.0058946020794866!GO:0000075;cell cycle checkpoint;0.00590780313360645!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00593757470763856!GO:0006626;protein targeting to mitochondrion;0.00594131569975145!GO:0009165;nucleotide biosynthetic process;0.00594131569975145!GO:0006611;protein export from nucleus;0.00625106845209638!GO:0044433;cytoplasmic vesicle part;0.00634257224792231!GO:0006643;membrane lipid metabolic process;0.00637566289838944!GO:0043681;protein import into mitochondrion;0.00642147096928536!GO:0047485;protein N-terminus binding;0.00669560755357982!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00695008299686791!GO:0030032;lamellipodium biogenesis;0.00720177455311018!GO:0000059;protein import into nucleus, docking;0.00722057469727352!GO:0008312;7S RNA binding;0.00728588042707641!GO:0007050;cell cycle arrest;0.00762487981883089!GO:0006839;mitochondrial transport;0.00763512156506607!GO:0008094;DNA-dependent ATPase activity;0.00774780561258305!GO:0045045;secretory pathway;0.00776213890662511!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00784118109220177!GO:0006984;ER-nuclear signaling pathway;0.00784118109220177!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00789008366526346!GO:0045047;protein targeting to ER;0.00789008366526346!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00811953970625651!GO:0022411;cellular component disassembly;0.00812179449687233!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00825581742658104!GO:0008139;nuclear localization sequence binding;0.0082662491488886!GO:0005637;nuclear inner membrane;0.00838964605248932!GO:0043022;ribosome binding;0.00842974414867!GO:0016584;nucleosome positioning;0.00859167872184658!GO:0031625;ubiquitin protein ligase binding;0.00860036892028211!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00874488872963737!GO:0048037;cofactor binding;0.00882549403010312!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00882651761774643!GO:0050790;regulation of catalytic activity;0.00882651761774643!GO:0030137;COPI-coated vesicle;0.00882651761774643!GO:0006607;NLS-bearing substrate import into nucleus;0.00887374246078319!GO:0030308;negative regulation of cell growth;0.00918133132996866!GO:0045892;negative regulation of transcription, DNA-dependent;0.00930947891036655!GO:0008629;induction of apoptosis by intracellular signals;0.00937166419055414!GO:0000776;kinetochore;0.00939486585012588!GO:0006506;GPI anchor biosynthetic process;0.00992481174119587!GO:0005684;U2-dependent spliceosome;0.00994405389511066!GO:0030127;COPII vesicle coat;0.0100096219350961!GO:0012507;ER to Golgi transport vesicle membrane;0.0100096219350961!GO:0006289;nucleotide-excision repair;0.0103773653831408!GO:0008361;regulation of cell size;0.0103836313334325!GO:0006505;GPI anchor metabolic process;0.0104279843590695!GO:0046983;protein dimerization activity;0.0104610723605438!GO:0008022;protein C-terminus binding;0.0104610723605438!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0105315696627069!GO:0004721;phosphoprotein phosphatase activity;0.0107692516633069!GO:0003678;DNA helicase activity;0.0108792376675027!GO:0005774;vacuolar membrane;0.0109512199590931!GO:0030029;actin filament-based process;0.0111972178391964!GO:0030521;androgen receptor signaling pathway;0.0114594743736309!GO:0006595;polyamine metabolic process;0.0115663529000891!GO:0030125;clathrin vesicle coat;0.0115703742769067!GO:0030665;clathrin coated vesicle membrane;0.0115703742769067!GO:0006338;chromatin remodeling;0.0119502211823713!GO:0008097;5S rRNA binding;0.0121950167719599!GO:0031901;early endosome membrane;0.0127665799319361!GO:0007006;mitochondrial membrane organization and biogenesis;0.013122395830527!GO:0046966;thyroid hormone receptor binding;0.0131355013586588!GO:0032508;DNA duplex unwinding;0.0131769043593283!GO:0032392;DNA geometric change;0.0131769043593283!GO:0000118;histone deacetylase complex;0.0131769043593283!GO:0008234;cysteine-type peptidase activity;0.0134467295769956!GO:0016741;transferase activity, transferring one-carbon groups;0.013492246468876!GO:0008168;methyltransferase activity;0.0145958790395537!GO:0000339;RNA cap binding;0.0150433681514167!GO:0045926;negative regulation of growth;0.0154375710535246!GO:0016126;sterol biosynthetic process;0.0159575584367169!GO:0031902;late endosome membrane;0.0159719184187342!GO:0000096;sulfur amino acid metabolic process;0.0160080477326549!GO:0051540;metal cluster binding;0.0162207269147382!GO:0051536;iron-sulfur cluster binding;0.0162207269147382!GO:0005874;microtubule;0.0162220782849805!GO:0009451;RNA modification;0.0163638751311358!GO:0009116;nucleoside metabolic process;0.0163783531673929!GO:0007052;mitotic spindle organization and biogenesis;0.0165197605164656!GO:0007034;vacuolar transport;0.0166223333057663!GO:0016272;prefoldin complex;0.0167705945992509!GO:0051539;4 iron, 4 sulfur cluster binding;0.0171393955183903!GO:0017166;vinculin binding;0.0175970749910269!GO:0005832;chaperonin-containing T-complex;0.0176867663638606!GO:0008637;apoptotic mitochondrial changes;0.0178928122125312!GO:0006497;protein amino acid lipidation;0.0179525058901651!GO:0051338;regulation of transferase activity;0.0187231072648469!GO:0050789;regulation of biological process;0.0188800454692013!GO:0006644;phospholipid metabolic process;0.0189818123964543!GO:0031529;ruffle organization and biogenesis;0.0189970792045301!GO:0032259;methylation;0.0190616317718575!GO:0001558;regulation of cell growth;0.0192915076434344!GO:0006519;amino acid and derivative metabolic process;0.019365386703486!GO:0006144;purine base metabolic process;0.0195207240106135!GO:0043414;biopolymer methylation;0.0196085271564492!GO:0030031;cell projection biogenesis;0.0196376633998173!GO:0003725;double-stranded RNA binding;0.0198733482895978!GO:0007265;Ras protein signal transduction;0.0202790596696784!GO:0016049;cell growth;0.0212343139299001!GO:0022406;membrane docking;0.0215862282771529!GO:0048278;vesicle docking;0.0215862282771529!GO:0051287;NAD binding;0.0221179624545339!GO:0048518;positive regulation of biological process;0.0221565661718287!GO:0019783;small conjugating protein-specific protease activity;0.0224790726995098!GO:0030027;lamellipodium;0.0225277455600295!GO:0006213;pyrimidine nucleoside metabolic process;0.0226885005822545!GO:0031124;mRNA 3'-end processing;0.0227142843656367!GO:0006730;one-carbon compound metabolic process;0.0230603780962415!GO:0006284;base-excision repair;0.0231047100888856!GO:0044437;vacuolar part;0.0231932846554106!GO:0007093;mitotic cell cycle checkpoint;0.0234496324384675!GO:0007021;tubulin folding;0.0234577714466102!GO:0005669;transcription factor TFIID complex;0.0235285181722874!GO:0042393;histone binding;0.0235996848169938!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0235996848169938!GO:0015002;heme-copper terminal oxidase activity;0.0235996848169938!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0235996848169938!GO:0004129;cytochrome-c oxidase activity;0.0235996848169938!GO:0006904;vesicle docking during exocytosis;0.0237574409718565!GO:0006740;NADPH regeneration;0.0241374238795337!GO:0006098;pentose-phosphate shunt;0.0241374238795337!GO:0008180;signalosome;0.0243628090728525!GO:0006400;tRNA modification;0.0243785964591847!GO:0003746;translation elongation factor activity;0.0243785964591847!GO:0004527;exonuclease activity;0.0246046709564573!GO:0033673;negative regulation of kinase activity;0.024778161936486!GO:0006469;negative regulation of protein kinase activity;0.024778161936486!GO:0006672;ceramide metabolic process;0.0248081271859479!GO:0000086;G2/M transition of mitotic cell cycle;0.0249661433348306!GO:0016301;kinase activity;0.0257348133562756!GO:0004518;nuclease activity;0.0257926750374243!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0259928891396924!GO:0016311;dephosphorylation;0.0261767167096109!GO:0005856;cytoskeleton;0.0262832555303366!GO:0030518;steroid hormone receptor signaling pathway;0.0264192425062402!GO:0005765;lysosomal membrane;0.026469288675028!GO:0019222;regulation of metabolic process;0.0270108163328148!GO:0006892;post-Golgi vesicle-mediated transport;0.0271817609665688!GO:0008538;proteasome activator activity;0.0280792700354075!GO:0051348;negative regulation of transferase activity;0.0282484161735034!GO:0006695;cholesterol biosynthetic process;0.0283632310224929!GO:0006376;mRNA splice site selection;0.0283709807183327!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0283709807183327!GO:0007088;regulation of mitosis;0.0284099313021325!GO:0009081;branched chain family amino acid metabolic process;0.0286695842655007!GO:0006268;DNA unwinding during replication;0.0288089519797917!GO:0030140;trans-Golgi network transport vesicle;0.0292221969013728!GO:0043284;biopolymer biosynthetic process;0.0292730535323712!GO:0045334;clathrin-coated endocytic vesicle;0.029345842403636!GO:0008426;protein kinase C inhibitor activity;0.029345842403636!GO:0031371;ubiquitin conjugating enzyme complex;0.029345842403636!GO:0006564;L-serine biosynthetic process;0.0293850149751161!GO:0051098;regulation of binding;0.0299080293245077!GO:0004843;ubiquitin-specific protease activity;0.0299080293245077!GO:0006415;translational termination;0.0299342970405511!GO:0009303;rRNA transcription;0.0302078775978723!GO:0006979;response to oxidative stress;0.0305570185557451!GO:0046519;sphingoid metabolic process;0.0313910949869509!GO:0005784;translocon complex;0.0314785510416515!GO:0035035;histone acetyltransferase binding;0.0319925985883423!GO:0004177;aminopeptidase activity;0.0326574578994482!GO:0003756;protein disulfide isomerase activity;0.0343781153166277!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0343781153166277!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0343781153166277!GO:0005876;spindle microtubule;0.034437107055585!GO:0006354;RNA elongation;0.0350851456812263!GO:0046822;regulation of nucleocytoplasmic transport;0.035160936705465!GO:0006360;transcription from RNA polymerase I promoter;0.0357429184666695!GO:0050681;androgen receptor binding;0.0358011384015093!GO:0007017;microtubule-based process;0.0358623717180223!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0364831692703903!GO:0006509;membrane protein ectodomain proteolysis;0.0366154833292412!GO:0033619;membrane protein proteolysis;0.0366154833292412!GO:0009119;ribonucleoside metabolic process;0.0374676769905192!GO:0043549;regulation of kinase activity;0.0380932209058193!GO:0016407;acetyltransferase activity;0.0381828471071818!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0384790016774255!GO:0000123;histone acetyltransferase complex;0.038765325923363!GO:0043189;H4/H2A histone acetyltransferase complex;0.0387800426816689!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0396250774694385!GO:0006767;water-soluble vitamin metabolic process;0.0396792015278332!GO:0050811;GABA receptor binding;0.0402837312451191!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0410216694572601!GO:0004860;protein kinase inhibitor activity;0.0410364976648011!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0411045382228678!GO:0040029;regulation of gene expression, epigenetic;0.0413945919876883!GO:0051128;regulation of cellular component organization and biogenesis;0.0418042896055998!GO:0006378;mRNA polyadenylation;0.0419425606951287!GO:0030433;ER-associated protein catabolic process;0.0422970153595187!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0422970153595187!GO:0004221;ubiquitin thiolesterase activity;0.0436758329794383!GO:0031461;cullin-RING ubiquitin ligase complex;0.0438407008888389!GO:0031575;G1/S transition checkpoint;0.0442960210879312!GO:0006950;response to stress;0.0444887806443078!GO:0004300;enoyl-CoA hydratase activity;0.0446038076897504!GO:0048468;cell development;0.044750749736583!GO:0019511;peptidyl-proline hydroxylation;0.044750749736583!GO:0018208;peptidyl-proline modification;0.044750749736583!GO:0019471;4-hydroxyproline metabolic process;0.044750749736583!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.044750749736583!GO:0030911;TPR domain binding;0.045157318922756!GO:0042158;lipoprotein biosynthetic process;0.0454874855036932!GO:0060166;olfactory pit development;0.0455592173496267!GO:0021768;nucleus accumbens development;0.0455592173496267!GO:0002072;optic cup morphogenesis involved in camera-type eye development;0.0455592173496267!GO:0000209;protein polyubiquitination;0.0456307599172417!GO:0017134;fibroblast growth factor binding;0.0465017404068718!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0468662879715997!GO:0006518;peptide metabolic process;0.0471313177030067!GO:0006310;DNA recombination;0.0481338235934159!GO:0051101;regulation of DNA binding;0.0481823860887557!GO:0032200;telomere organization and biogenesis;0.0484779876384973!GO:0000723;telomere maintenance;0.0484779876384973!GO:0007041;lysosomal transport;0.0484798564237881!GO:0022415;viral reproductive process;0.048736566193593!GO:0005862;muscle thin filament tropomyosin;0.0492521971742404!GO:0001952;regulation of cell-matrix adhesion;0.0495723249444362!GO:0042026;protein refolding;0.0496042665684788 | |||
|sample_id=10434 | |sample_id=10434 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=ZEB1:1.95317290124;TP53:1.87899985738;VSX1,2:1.83436288344;SNAI1..3:1.70116321496;TBX4,5:1.51238018244;ARID5B:1.33416151933;bHLH_family:1.2661924352;FOXQ1:1.25952423126;ELK1,4_GABP{A,B1}:1.19647225519;RBPJ:1.08644945446;XCPE1{core}:1.07980206187;FOXN1:1.03807676507;NRF1:0.988412074244;HIF1A:0.911598524419;ADNP_IRX_SIX_ZHX:0.901402031251;SP1:0.891122633698;NFY{A,B,C}:0.841986715787;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.829166238246;NKX2-1,4:0.827250681066;MYOD1:0.770835171473;CDC5L:0.758694645231;PAX4:0.751360046842;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.747359141157;ZNF143:0.744499425195;EBF1:0.676263783717;SOX17:0.656907932222;FOXP1:0.617825787349;NFE2L2:0.596291614351;HSF1,2:0.591087114518;TEAD1:0.565779326278;ZNF148:0.535346944766;TFAP2{A,C}:0.519971410426;FOSL2:0.4958662932;BACH2:0.438184935829;FOS_FOS{B,L1}_JUN{B,D}:0.428093944828;RFX2..5_RFXANK_RFXAP:0.422301898916;PAX2:0.414229400479;ONECUT1,2:0.396389830138;HOX{A4,D4}:0.347754387237;NKX2-2,8:0.33863014058;HAND1,2:0.333079404767;PITX1..3:0.326846019602;NFE2:0.326842871678;FOX{F1,F2,J1}:0.326161223448;HOX{A6,A7,B6,B7}:0.323317496632;SOX2:0.317134008588;GFI1:0.316315535598;POU1F1:0.299310824277;E2F1..5:0.280702475015;SREBF1,2:0.271113460785;CEBPA,B_DDIT3:0.270405975889;BREu{core}:0.26737032859;IRF7:0.257383283953;NKX3-2:0.248659657508;YY1:0.21717301087;POU2F1..3:0.208423048329;TFDP1:0.189560731942;FOXM1:0.167727731231;LMO2:0.152722878136;LHX3,4:0.152660640238;TEF:0.152130238323;ELF1,2,4:0.147887769014;ZBTB6:0.141820054109;SOX{8,9,10}:0.119922324278;IKZF1:0.107448244173;MAZ:0.0975674906002;MYB:0.0700671773461;PAX1,9:0.0678701911404;ZFP161:0.0603007936365;RFX1:0.0520842885762;CREB1:0.0493222373393;TOPORS:0.0454244773849;PPARG:0.0436069948035;HOXA9_MEIS1:0.0426781225014;OCT4_SOX2{dimer}:0.00397816545412;EP300:-0.00675773063411;TFCP2:-0.00757721423303;FOX{D1,D2}:-0.0188527005761;CUX2:-0.0313860640063;NKX2-3_NKX2-5:-0.0456132429619;ZIC1..3:-0.0486808038038;CDX1,2,4:-0.0583992690315;TFAP2B:-0.0586643600209;CRX:-0.0604389023754;FOXO1,3,4:-0.0661729669086;FOX{I1,J2}:-0.0752199445284;TLX1..3_NFIC{dimer}:-0.0772886273316;AIRE:-0.0870954706459;RORA:-0.101691669513;NR5A1,2:-0.1025502033;MTF1:-0.122667935042;NKX3-1:-0.128891717386;HIC1:-0.131923960423;HNF1A:-0.154768114113;PAX3,7:-0.16062439002;NR1H4:-0.161666217889;RXR{A,B,G}:-0.162937195456;GFI1B:-0.164914154535;NANOG:-0.176142306309;ZNF384:-0.180443588282;ATF4:-0.183442366818;PDX1:-0.184504081399;HNF4A_NR2F1,2:-0.188925169645;NFIX:-0.205757071844;HLF:-0.213174307787;ESR1:-0.234414414201;T:-0.269498630903;LEF1_TCF7_TCF7L1,2:-0.280982737386;PBX1:-0.283415229054;GTF2A1,2:-0.29010512276;STAT5{A,B}:-0.295302891505;NKX6-1,2:-0.297783036541;MYBL2:-0.300355321382;GTF2I:-0.303694326092;SRF:-0.314680813815;ATF5_CREB3:-0.322819020081;NR6A1:-0.323792085399;FOXP3:-0.339285110326;EN1,2:-0.346923394534;GATA6:-0.349210097888;NFIL3:-0.353165428615;FOXA2:-0.36392220244;IRF1,2:-0.369070131105;MED-1{core}:-0.405490314454;NFKB1_REL_RELA:-0.415801298714;PAX5:-0.419025593223;MTE{core}:-0.425925216637;MAFB:-0.426374214689;POU5F1:-0.427871599313;RUNX1..3:-0.433454821308;SPIB:-0.439919745935;PAX8:-0.448665665038;ETS1,2:-0.461838554542;UFEwm:-0.462259204763;RREB1:-0.463731038632;ZNF423:-0.468024495556;EGR1..3:-0.472171638571;PRRX1,2:-0.515904047489;ZBTB16:-0.534619723129;MEF2{A,B,C,D}:-0.541782892993;ZNF238:-0.544212458171;AHR_ARNT_ARNT2:-0.56378469353;PAX6:-0.570206483833;PATZ1:-0.586599175708;AR:-0.590466337295;REST:-0.602249636569;SPZ1:-0.612360847959;HMGA1,2:-0.620865304183;HBP1_HMGB_SSRP1_UBTF:-0.622109757921;DMAP1_NCOR{1,2}_SMARC:-0.627198796757;ATF6:-0.627525555749;ATF2:-0.630434526596;NR3C1:-0.630929966254;MYFfamily:-0.648230156013;SPI1:-0.651940615099;GLI1..3:-0.6686692622;TGIF1:-0.6750938282;KLF4:-0.680846928454;HOX{A5,B5}:-0.69753263277;FOXD3:-0.697537247971;PRDM1:-0.709198099385;EVI1:-0.713147760301;TBP:-0.740819076686;GZF1:-0.742294873053;ALX1:-0.765792875503;SOX5:-0.766400057916;TAL1_TCF{3,4,12}:-0.780238074758;BPTF:-0.804538139284;POU6F1:-0.840776002343;SMAD1..7,9:-0.880003358185;XBP1:-0.886190340033;IKZF2:-0.890305506816;FOXL1:-0.911859380294;GCM1,2:-0.923973956202;RXRA_VDR{dimer}:-0.980243123628;POU3F1..4:-0.998110684776;TFAP4:-1.00207146485;STAT2,4,6:-1.01759809388;NFE2L1:-1.02215725918;NHLH1,2:-1.06168933796;ESRRA:-1.1062871624;MZF1:-1.11507278567;JUN:-1.12120730534;NANOG{mouse}:-1.18538629015;DBP:-1.21762425597;TLX2:-1.23849089956;HES1:-1.2689979811;ALX4:-1.33238109367;STAT1,3:-1.42650123533;GATA4:-1.43269509264;NFATC1..3:-1.55551716498;HMX1:-1.81991121532 | |top_motifs=ZEB1:1.95317290124;TP53:1.87899985738;VSX1,2:1.83436288344;SNAI1..3:1.70116321496;TBX4,5:1.51238018244;ARID5B:1.33416151933;bHLH_family:1.2661924352;FOXQ1:1.25952423126;ELK1,4_GABP{A,B1}:1.19647225519;RBPJ:1.08644945446;XCPE1{core}:1.07980206187;FOXN1:1.03807676507;NRF1:0.988412074244;HIF1A:0.911598524419;ADNP_IRX_SIX_ZHX:0.901402031251;SP1:0.891122633698;NFY{A,B,C}:0.841986715787;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.829166238246;NKX2-1,4:0.827250681066;MYOD1:0.770835171473;CDC5L:0.758694645231;PAX4:0.751360046842;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.747359141157;ZNF143:0.744499425195;EBF1:0.676263783717;SOX17:0.656907932222;FOXP1:0.617825787349;NFE2L2:0.596291614351;HSF1,2:0.591087114518;TEAD1:0.565779326278;ZNF148:0.535346944766;TFAP2{A,C}:0.519971410426;FOSL2:0.4958662932;BACH2:0.438184935829;FOS_FOS{B,L1}_JUN{B,D}:0.428093944828;RFX2..5_RFXANK_RFXAP:0.422301898916;PAX2:0.414229400479;ONECUT1,2:0.396389830138;HOX{A4,D4}:0.347754387237;NKX2-2,8:0.33863014058;HAND1,2:0.333079404767;PITX1..3:0.326846019602;NFE2:0.326842871678;FOX{F1,F2,J1}:0.326161223448;HOX{A6,A7,B6,B7}:0.323317496632;SOX2:0.317134008588;GFI1:0.316315535598;POU1F1:0.299310824277;E2F1..5:0.280702475015;SREBF1,2:0.271113460785;CEBPA,B_DDIT3:0.270405975889;BREu{core}:0.26737032859;IRF7:0.257383283953;NKX3-2:0.248659657508;YY1:0.21717301087;POU2F1..3:0.208423048329;TFDP1:0.189560731942;FOXM1:0.167727731231;LMO2:0.152722878136;LHX3,4:0.152660640238;TEF:0.152130238323;ELF1,2,4:0.147887769014;ZBTB6:0.141820054109;SOX{8,9,10}:0.119922324278;IKZF1:0.107448244173;MAZ:0.0975674906002;MYB:0.0700671773461;PAX1,9:0.0678701911404;ZFP161:0.0603007936365;RFX1:0.0520842885762;CREB1:0.0493222373393;TOPORS:0.0454244773849;PPARG:0.0436069948035;HOXA9_MEIS1:0.0426781225014;OCT4_SOX2{dimer}:0.00397816545412;EP300:-0.00675773063411;TFCP2:-0.00757721423303;FOX{D1,D2}:-0.0188527005761;CUX2:-0.0313860640063;NKX2-3_NKX2-5:-0.0456132429619;ZIC1..3:-0.0486808038038;CDX1,2,4:-0.0583992690315;TFAP2B:-0.0586643600209;CRX:-0.0604389023754;FOXO1,3,4:-0.0661729669086;FOX{I1,J2}:-0.0752199445284;TLX1..3_NFIC{dimer}:-0.0772886273316;AIRE:-0.0870954706459;RORA:-0.101691669513;NR5A1,2:-0.1025502033;MTF1:-0.122667935042;NKX3-1:-0.128891717386;HIC1:-0.131923960423;HNF1A:-0.154768114113;PAX3,7:-0.16062439002;NR1H4:-0.161666217889;RXR{A,B,G}:-0.162937195456;GFI1B:-0.164914154535;NANOG:-0.176142306309;ZNF384:-0.180443588282;ATF4:-0.183442366818;PDX1:-0.184504081399;HNF4A_NR2F1,2:-0.188925169645;NFIX:-0.205757071844;HLF:-0.213174307787;ESR1:-0.234414414201;T:-0.269498630903;LEF1_TCF7_TCF7L1,2:-0.280982737386;PBX1:-0.283415229054;GTF2A1,2:-0.29010512276;STAT5{A,B}:-0.295302891505;NKX6-1,2:-0.297783036541;MYBL2:-0.300355321382;GTF2I:-0.303694326092;SRF:-0.314680813815;ATF5_CREB3:-0.322819020081;NR6A1:-0.323792085399;FOXP3:-0.339285110326;EN1,2:-0.346923394534;GATA6:-0.349210097888;NFIL3:-0.353165428615;FOXA2:-0.36392220244;IRF1,2:-0.369070131105;MED-1{core}:-0.405490314454;NFKB1_REL_RELA:-0.415801298714;PAX5:-0.419025593223;MTE{core}:-0.425925216637;MAFB:-0.426374214689;POU5F1:-0.427871599313;RUNX1..3:-0.433454821308;SPIB:-0.439919745935;PAX8:-0.448665665038;ETS1,2:-0.461838554542;UFEwm:-0.462259204763;RREB1:-0.463731038632;ZNF423:-0.468024495556;EGR1..3:-0.472171638571;PRRX1,2:-0.515904047489;ZBTB16:-0.534619723129;MEF2{A,B,C,D}:-0.541782892993;ZNF238:-0.544212458171;AHR_ARNT_ARNT2:-0.56378469353;PAX6:-0.570206483833;PATZ1:-0.586599175708;AR:-0.590466337295;REST:-0.602249636569;SPZ1:-0.612360847959;HMGA1,2:-0.620865304183;HBP1_HMGB_SSRP1_UBTF:-0.622109757921;DMAP1_NCOR{1,2}_SMARC:-0.627198796757;ATF6:-0.627525555749;ATF2:-0.630434526596;NR3C1:-0.630929966254;MYFfamily:-0.648230156013;SPI1:-0.651940615099;GLI1..3:-0.6686692622;TGIF1:-0.6750938282;KLF4:-0.680846928454;HOX{A5,B5}:-0.69753263277;FOXD3:-0.697537247971;PRDM1:-0.709198099385;EVI1:-0.713147760301;TBP:-0.740819076686;GZF1:-0.742294873053;ALX1:-0.765792875503;SOX5:-0.766400057916;TAL1_TCF{3,4,12}:-0.780238074758;BPTF:-0.804538139284;POU6F1:-0.840776002343;SMAD1..7,9:-0.880003358185;XBP1:-0.886190340033;IKZF2:-0.890305506816;FOXL1:-0.911859380294;GCM1,2:-0.923973956202;RXRA_VDR{dimer}:-0.980243123628;POU3F1..4:-0.998110684776;TFAP4:-1.00207146485;STAT2,4,6:-1.01759809388;NFE2L1:-1.02215725918;NHLH1,2:-1.06168933796;ESRRA:-1.1062871624;MZF1:-1.11507278567;JUN:-1.12120730534;NANOG{mouse}:-1.18538629015;DBP:-1.21762425597;TLX2:-1.23849089956;HES1:-1.2689979811;ALX4:-1.33238109367;STAT1,3:-1.42650123533;GATA4:-1.43269509264;NFATC1..3:-1.55551716498;HMX1:-1.81991121532 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10434-106E2;search_select_hide=table117:FF:10434-106E2 | |||
}} | }} | ||
Latest revision as of 14:01, 3 June 2020
| Name: | oral squamous cell carcinoma cell line:Ca9-22 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10752 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10752
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10752
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.759 |
| 10 | 10 | 0.617 |
| 100 | 100 | 0.514 |
| 101 | 101 | 0.606 |
| 102 | 102 | 0.164 |
| 103 | 103 | 0.647 |
| 104 | 104 | 0.891 |
| 105 | 105 | 0.71 |
| 106 | 106 | 0.00338 |
| 107 | 107 | 0.0866 |
| 108 | 108 | 0.853 |
| 109 | 109 | 0.164 |
| 11 | 11 | 0.425 |
| 110 | 110 | 0.673 |
| 111 | 111 | 0.893 |
| 112 | 112 | 0.571 |
| 113 | 113 | 0.308 |
| 114 | 114 | 0.323 |
| 115 | 115 | 0.66 |
| 116 | 116 | 0.29 |
| 117 | 117 | 0.0952 |
| 118 | 118 | 0.923 |
| 119 | 119 | 0.121 |
| 12 | 12 | 0.902 |
| 120 | 120 | 0.982 |
| 121 | 121 | 0.736 |
| 122 | 122 | 0.565 |
| 123 | 123 | 0.682 |
| 124 | 124 | 0.132 |
| 125 | 125 | 0.578 |
| 126 | 126 | 0.677 |
| 127 | 127 | 0.623 |
| 128 | 128 | 0.00126 |
| 129 | 129 | 0.78 |
| 13 | 13 | 0.144 |
| 130 | 130 | 0.734 |
| 131 | 131 | 0.252 |
| 132 | 132 | 0.87 |
| 133 | 133 | 0.0079 |
| 134 | 134 | 0.106 |
| 135 | 135 | 0.034 |
| 136 | 136 | 0.0349 |
| 137 | 137 | 0.0379 |
| 138 | 138 | 0.569 |
| 139 | 139 | 0.2 |
| 14 | 14 | 0.896 |
| 140 | 140 | 0.798 |
| 141 | 141 | 0.668 |
| 142 | 142 | 0.754 |
| 143 | 143 | 0.07 |
| 144 | 144 | 0.309 |
| 145 | 145 | 0.196 |
| 146 | 146 | 0.591 |
| 147 | 147 | 0.994 |
| 148 | 148 | 0.456 |
| 149 | 149 | 0.722 |
| 15 | 15 | 0.215 |
| 150 | 150 | 0.893 |
| 151 | 151 | 0.834 |
| 152 | 152 | 0.692 |
| 153 | 153 | 0.269 |
| 154 | 154 | 0.89 |
| 155 | 155 | 0.325 |
| 156 | 156 | 0.19 |
| 157 | 157 | 0.926 |
| 158 | 158 | 0.46 |
| 159 | 159 | 0.461 |
| 16 | 16 | 0.533 |
| 160 | 160 | 0.217 |
| 161 | 161 | 0.908 |
| 162 | 162 | 0.667 |
| 163 | 163 | 0.975 |
| 164 | 164 | 0.997 |
| 165 | 165 | 0.788 |
| 166 | 166 | 0.375 |
| 167 | 167 | 0.781 |
| 168 | 168 | 0.915 |
| 169 | 169 | 0.313 |
| 17 | 17 | 0.446 |
| 18 | 18 | 0.174 |
| 19 | 19 | 0.128 |
| 2 | 2 | 0.895 |
| 20 | 20 | 0.445 |
| 21 | 21 | 0.571 |
| 22 | 22 | 0.976 |
| 23 | 23 | 0.0948 |
| 24 | 24 | 0.132 |
| 25 | 25 | 0.893 |
| 26 | 26 | 0.841 |
| 27 | 27 | 0.391 |
| 28 | 28 | 0.385 |
| 29 | 29 | 0.783 |
| 3 | 3 | 0.461 |
| 30 | 30 | 0.397 |
| 31 | 31 | 0.113 |
| 32 | 32 | 0.00323 |
| 33 | 33 | 0.767 |
| 34 | 34 | 0.2 |
| 35 | 35 | 0.0382 |
| 36 | 36 | 0.314 |
| 37 | 37 | 0.821 |
| 38 | 38 | 0.817 |
| 39 | 39 | 0.54 |
| 4 | 4 | 0.805 |
| 40 | 40 | 0.701 |
| 41 | 41 | 0.0801 |
| 42 | 42 | 0.83 |
| 43 | 43 | 0.0642 |
| 44 | 44 | 0.418 |
| 45 | 45 | 0.669 |
| 46 | 46 | 0.151 |
| 47 | 47 | 0.987 |
| 48 | 48 | 0.709 |
| 49 | 49 | 0.0796 |
| 5 | 5 | 0.192 |
| 50 | 50 | 0.627 |
| 51 | 51 | 0.651 |
| 52 | 52 | 0.592 |
| 53 | 53 | 0.958 |
| 54 | 54 | 0.896 |
| 55 | 55 | 0.756 |
| 56 | 56 | 0.997 |
| 57 | 57 | 0.673 |
| 58 | 58 | 0.732 |
| 59 | 59 | 0.204 |
| 6 | 6 | 0.916 |
| 60 | 60 | 0.622 |
| 61 | 61 | 0.644 |
| 62 | 62 | 0.214 |
| 63 | 63 | 0.815 |
| 64 | 64 | 0.456 |
| 65 | 65 | 0.117 |
| 66 | 66 | 0.0124 |
| 67 | 67 | 0.422 |
| 68 | 68 | 0.0788 |
| 69 | 69 | 0.523 |
| 7 | 7 | 0.246 |
| 70 | 70 | 0.942 |
| 71 | 71 | 0.442 |
| 72 | 72 | 0.505 |
| 73 | 73 | 0.395 |
| 74 | 74 | 0.00648 |
| 75 | 75 | 0.355 |
| 76 | 76 | 0.989 |
| 77 | 77 | 0.638 |
| 78 | 78 | 0.67 |
| 79 | 79 | 7.14955e-5 |
| 8 | 8 | 0.139 |
| 80 | 80 | 0.0465 |
| 81 | 81 | 0.0539 |
| 82 | 82 | 0.383 |
| 83 | 83 | 0.219 |
| 84 | 84 | 0.673 |
| 85 | 85 | 0.204 |
| 86 | 86 | 0.889 |
| 87 | 87 | 0.00459 |
| 88 | 88 | 0.345 |
| 89 | 89 | 0.487 |
| 9 | 9 | 0.145 |
| 90 | 90 | 0.0732 |
| 91 | 91 | 0.24 |
| 92 | 92 | 0.18 |
| 93 | 93 | 0.656 |
| 94 | 94 | 0.0381 |
| 95 | 95 | 0.27 |
| 96 | 96 | 0.0668 |
| 97 | 97 | 0.714 |
| 98 | 98 | 0.149 |
| 99 | 99 | 0.386 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10752
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102211 oral squamous cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004785 (respiratory system mucosa)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
