FF:11547-120B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004680 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004680 | ||
|accession_numbers=CAGE;DRX008349;DRR009221;DRZ000646;DRZ002031;DRZ011996;DRZ013381 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036994;DRR041360;DRZ007002 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000276 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11547-120B8 | |id=FF:11547-120B8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000276 | ||
|is_obsolete= | |||
|library_id=CNhs11349 | |||
|library_id_phase_based=2:CNhs11349 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11547 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CAGATC.11547 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11547 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.CAGATC.11547 | |||
|name=Mesenchymal Stem Cells - amniotic membrane, donor1 | |name=Mesenchymal Stem Cells - amniotic membrane, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11349,LSID769,release014,COMPLETED | |profile_hcage=CNhs11349,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.051206238195096,0,0,0,0,0.206980214093341,0,-0.174949655803322,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.127372421273706,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.102412476390192,0,-0.145899716966013,0,0,0,0,0,0,0,0,0.223383980553278,0,0,0,0,0,0.0752325666882454,0,-0.0969923612426051,0,0,0.00506884917709545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0544469093379314,0,0,0,-0.0728308873903555,-0.002662361857901,0,0,0,0.102412476390192,0.0871883269683027,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.0511322875137288,-0.0439169571939324,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120B8 | |rna_tube_id=120B8 | ||
|rna_weight_ug=57 | |rna_weight_ug=57 | ||
|rnaseq_library_id=SRhi10002.CAGATC | |||
|sample_age=? | |sample_age=? | ||
|sample_category=primary cells | |||
|sample_cell_catalog=HMSC.AM-500 | |sample_cell_catalog=HMSC.AM-500 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.81339129977205e-208!GO:0005737;cytoplasm;8.14165230629925e-189!GO:0043226;organelle;1.49984038939625e-159!GO:0043229;intracellular organelle;3.86917893538343e-159!GO:0043231;intracellular membrane-bound organelle;7.38915770987271e-158!GO:0043227;membrane-bound organelle;1.10717947299811e-157!GO:0044444;cytoplasmic part;2.65557112100532e-139!GO:0044422;organelle part;2.16172261742393e-115!GO:0044446;intracellular organelle part;6.45962568363154e-114!GO:0032991;macromolecular complex;3.21866712444861e-80!GO:0005515;protein binding;5.42904552203614e-75!GO:0044238;primary metabolic process;8.70522575440782e-72!GO:0044237;cellular metabolic process;9.47680718863836e-71!GO:0030529;ribonucleoprotein complex;5.67644664003014e-70!GO:0043170;macromolecule metabolic process;1.81408313333133e-64!GO:0005739;mitochondrion;1.63326330948325e-60!GO:0043233;organelle lumen;6.90993200349702e-58!GO:0031974;membrane-enclosed lumen;6.90993200349702e-58!GO:0003723;RNA binding;4.12295760682379e-54!GO:0044428;nuclear part;2.34871348229357e-52!GO:0031090;organelle membrane;4.88975474404172e-52!GO:0019538;protein metabolic process;1.37394681611696e-49!GO:0005634;nucleus;2.75415154223935e-47!GO:0016043;cellular component organization and biogenesis;7.51814288481815e-46!GO:0015031;protein transport;1.27230167778143e-44!GO:0044260;cellular macromolecule metabolic process;1.55018634039955e-44!GO:0033036;macromolecule localization;5.52488628847723e-44!GO:0044267;cellular protein metabolic process;1.4155249024226e-43!GO:0005840;ribosome;5.71147572708405e-43!GO:0045184;establishment of protein localization;2.1459453543229e-41!GO:0006412;translation;2.73215260411213e-41!GO:0008104;protein localization;3.90357922458752e-41!GO:0044429;mitochondrial part;1.59853893084642e-40!GO:0043234;protein complex;1.73478874972986e-40!GO:0005829;cytosol;3.53630127599921e-38!GO:0003735;structural constituent of ribosome;6.13673397826738e-38!GO:0009058;biosynthetic process;8.20201398742438e-38!GO:0006396;RNA processing;4.0944388658356e-37!GO:0031967;organelle envelope;1.64225523994283e-36!GO:0031975;envelope;3.85933405893701e-36!GO:0046907;intracellular transport;8.70653152929397e-35!GO:0009059;macromolecule biosynthetic process;5.44171198592893e-34!GO:0033279;ribosomal subunit;1.30726331192561e-33!GO:0044249;cellular biosynthetic process;3.67079204560961e-32!GO:0043283;biopolymer metabolic process;3.75164196328699e-32!GO:0031981;nuclear lumen;3.87560091544684e-32!GO:0016071;mRNA metabolic process;1.1124749172422e-30!GO:0006886;intracellular protein transport;1.95196248246505e-29!GO:0010467;gene expression;3.10671323998691e-29!GO:0008380;RNA splicing;1.53849391408149e-28!GO:0005740;mitochondrial envelope;1.1519342425587e-27!GO:0006397;mRNA processing;9.99816150100986e-27!GO:0006996;organelle organization and biogenesis;1.50501675149042e-26!GO:0031966;mitochondrial membrane;3.02960648849955e-26!GO:0019866;organelle inner membrane;2.95754093857787e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.23149481797188e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.24326794928038e-24!GO:0005743;mitochondrial inner membrane;6.69705492129197e-24!GO:0005783;endoplasmic reticulum;8.15588149775834e-24!GO:0065003;macromolecular complex assembly;1.1274598313335e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.09810183446216e-22!GO:0022607;cellular component assembly;1.31896912095897e-22!GO:0012505;endomembrane system;7.51302507690818e-22!GO:0006119;oxidative phosphorylation;7.76653415366392e-22!GO:0051649;establishment of cellular localization;2.07174804947736e-21!GO:0051641;cellular localization;2.68096653211825e-21!GO:0044445;cytosolic part;1.11130974749404e-20!GO:0043228;non-membrane-bound organelle;1.62497921703264e-20!GO:0043232;intracellular non-membrane-bound organelle;1.62497921703264e-20!GO:0005654;nucleoplasm;1.62635210253665e-20!GO:0048770;pigment granule;5.56433978378305e-20!GO:0042470;melanosome;5.56433978378305e-20!GO:0005681;spliceosome;6.76353376436477e-20!GO:0044455;mitochondrial membrane part;2.8760808599497e-19!GO:0006457;protein folding;5.16553042544589e-19!GO:0044432;endoplasmic reticulum part;1.87005334767399e-18!GO:0005794;Golgi apparatus;2.36293837500772e-18!GO:0015934;large ribosomal subunit;1.14452681518136e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.80890751211094e-17!GO:0016462;pyrophosphatase activity;2.25880693291578e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.3314345257181e-17!GO:0017111;nucleoside-triphosphatase activity;4.3343955390806e-17!GO:0015935;small ribosomal subunit;7.1740024228207e-17!GO:0044451;nucleoplasm part;8.2417398711908e-17!GO:0016874;ligase activity;1.9244033857734e-16!GO:0006512;ubiquitin cycle;2.38174859699263e-16!GO:0043285;biopolymer catabolic process;2.64981767251442e-16!GO:0000166;nucleotide binding;3.05230719791568e-16!GO:0005746;mitochondrial respiratory chain;6.99703127966612e-16!GO:0008134;transcription factor binding;1.31309759426762e-15!GO:0031980;mitochondrial lumen;2.01484462866393e-15!GO:0005759;mitochondrial matrix;2.01484462866393e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.25477487214607e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.51858456636259e-15!GO:0022618;protein-RNA complex assembly;3.02131564848447e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.59381385933933e-15!GO:0030163;protein catabolic process;3.74939977998451e-15!GO:0019941;modification-dependent protein catabolic process;4.7529005534339e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.7529005534339e-15!GO:0044257;cellular protein catabolic process;5.21392359575809e-15!GO:0048193;Golgi vesicle transport;5.83786002284916e-15!GO:0044265;cellular macromolecule catabolic process;6.94311184345634e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.30516635509393e-15!GO:0009057;macromolecule catabolic process;9.80832332492445e-15!GO:0051186;cofactor metabolic process;1.42934425450796e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.98644320835403e-14!GO:0003954;NADH dehydrogenase activity;3.98644320835403e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.98644320835403e-14!GO:0006605;protein targeting;4.69932610434463e-14!GO:0051082;unfolded protein binding;5.9312233751104e-14!GO:0008135;translation factor activity, nucleic acid binding;6.63748168561412e-14!GO:0006259;DNA metabolic process;1.74648855017309e-13!GO:0016192;vesicle-mediated transport;1.96901208100933e-13!GO:0044248;cellular catabolic process;2.93148309902461e-13!GO:0043412;biopolymer modification;4.06168428756279e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.63371921786242e-13!GO:0005761;mitochondrial ribosome;6.67159941131037e-13!GO:0000313;organellar ribosome;6.67159941131037e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.05678086630746e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.10538918572781e-12!GO:0005789;endoplasmic reticulum membrane;1.66110778490328e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.47493349149658e-12!GO:0045271;respiratory chain complex I;2.47493349149658e-12!GO:0005747;mitochondrial respiratory chain complex I;2.47493349149658e-12!GO:0005730;nucleolus;2.54019050160426e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.75252897232979e-12!GO:0042773;ATP synthesis coupled electron transport;2.75252897232979e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.51508401566302e-12!GO:0006464;protein modification process;5.78039042026688e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.99270247360298e-12!GO:0032553;ribonucleotide binding;8.10113364791885e-12!GO:0032555;purine ribonucleotide binding;8.10113364791885e-12!GO:0006732;coenzyme metabolic process;8.68733178258328e-12!GO:0005793;ER-Golgi intermediate compartment;1.15499902438535e-11!GO:0003712;transcription cofactor activity;2.48256759631057e-11!GO:0017076;purine nucleotide binding;3.67560641233495e-11!GO:0003676;nucleic acid binding;5.33466765622275e-11!GO:0012501;programmed cell death;5.61879932758721e-11!GO:0009055;electron carrier activity;5.82488734680389e-11!GO:0003743;translation initiation factor activity;7.21722269534095e-11!GO:0007049;cell cycle;8.52847846547853e-11!GO:0006915;apoptosis;1.42191671647893e-10!GO:0016070;RNA metabolic process;1.69052930711722e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.6172737171726e-10!GO:0000375;RNA splicing, via transesterification reactions;2.6172737171726e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.6172737171726e-10!GO:0009259;ribonucleotide metabolic process;2.96107416269723e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.35298989873253e-10!GO:0048523;negative regulation of cellular process;3.50524499299891e-10!GO:0006413;translational initiation;4.65225788149906e-10!GO:0008219;cell death;5.6743167260285e-10!GO:0016265;death;5.6743167260285e-10!GO:0008565;protein transporter activity;5.80858802495905e-10!GO:0008639;small protein conjugating enzyme activity;6.3880382626225e-10!GO:0019787;small conjugating protein ligase activity;6.95183187266449e-10!GO:0005635;nuclear envelope;7.95664956575073e-10!GO:0006163;purine nucleotide metabolic process;9.87884886217966e-10!GO:0009150;purine ribonucleotide metabolic process;1.02893062430083e-09!GO:0031965;nuclear membrane;1.10332472786723e-09!GO:0006446;regulation of translational initiation;1.27606889614607e-09!GO:0004842;ubiquitin-protein ligase activity;1.30515671455801e-09!GO:0043687;post-translational protein modification;2.0521452243025e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.25422411213603e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.30480103041383e-09!GO:0009260;ribonucleotide biosynthetic process;4.30480103041383e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.44210505626677e-09!GO:0006164;purine nucleotide biosynthetic process;4.44210505626677e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.55797635570977e-09!GO:0016604;nuclear body;5.25223319276636e-09!GO:0009141;nucleoside triphosphate metabolic process;7.09717708254075e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.49486728786002e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.49486728786002e-09!GO:0015986;ATP synthesis coupled proton transport;8.08391467669341e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.08391467669341e-09!GO:0016881;acid-amino acid ligase activity;1.1150144043234e-08!GO:0048519;negative regulation of biological process;1.12687701575514e-08!GO:0009056;catabolic process;1.22051486312026e-08!GO:0003924;GTPase activity;1.62313409701429e-08!GO:0005788;endoplasmic reticulum lumen;1.62813477635499e-08!GO:0019829;cation-transporting ATPase activity;1.65984086911862e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.86847898609252e-08!GO:0030120;vesicle coat;1.86847898609252e-08!GO:0030662;coated vesicle membrane;1.86847898609252e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.09991552505344e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.09991552505344e-08!GO:0042254;ribosome biogenesis and assembly;2.300008104405e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.5118631694935e-08!GO:0005524;ATP binding;2.57399733992e-08!GO:0032559;adenyl ribonucleotide binding;2.64068378019996e-08!GO:0005768;endosome;2.64068378019996e-08!GO:0006974;response to DNA damage stimulus;2.75925718046992e-08!GO:0005773;vacuole;2.79625622294772e-08!GO:0022402;cell cycle process;2.86538627990699e-08!GO:0046034;ATP metabolic process;3.31037941232226e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.66043110133203e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.66043110133203e-08!GO:0044453;nuclear membrane part;3.75435802407229e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.87472857866594e-08!GO:0042623;ATPase activity, coupled;4.51594164362303e-08!GO:0044431;Golgi apparatus part;4.93899156800827e-08!GO:0006913;nucleocytoplasmic transport;5.34049489362021e-08!GO:0009060;aerobic respiration;6.00011920191428e-08!GO:0031988;membrane-bound vesicle;6.45205914351527e-08!GO:0048475;coated membrane;6.45205914351527e-08!GO:0030117;membrane coat;6.45205914351527e-08!GO:0016887;ATPase activity;6.67680085004408e-08!GO:0016023;cytoplasmic membrane-bound vesicle;7.15416360180099e-08!GO:0045333;cellular respiration;8.22755692502836e-08!GO:0043067;regulation of programmed cell death;8.86869674516448e-08!GO:0051169;nuclear transport;1.05365447068155e-07!GO:0043069;negative regulation of programmed cell death;1.05365447068155e-07!GO:0000074;regulation of progression through cell cycle;1.08440353769808e-07!GO:0006461;protein complex assembly;1.08440353769808e-07!GO:0051246;regulation of protein metabolic process;1.23169504582572e-07!GO:0030554;adenyl nucleotide binding;1.23354605423241e-07!GO:0051726;regulation of cell cycle;1.28270999042449e-07!GO:0006399;tRNA metabolic process;1.28270999042449e-07!GO:0042981;regulation of apoptosis;1.31582547751929e-07!GO:0016607;nuclear speck;1.33030463495697e-07!GO:0006754;ATP biosynthetic process;1.33030463495697e-07!GO:0006753;nucleoside phosphate metabolic process;1.33030463495697e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.43305827938235e-07!GO:0007005;mitochondrion organization and biogenesis;1.43305827938235e-07!GO:0006366;transcription from RNA polymerase II promoter;1.53785240890749e-07!GO:0043066;negative regulation of apoptosis;2.77266776213328e-07!GO:0009117;nucleotide metabolic process;2.8130190436206e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.46816317219152e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.46816317219152e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.46816317219152e-07!GO:0006916;anti-apoptosis;4.50478542741223e-07!GO:0050794;regulation of cellular process;4.75189093956834e-07!GO:0000323;lytic vacuole;5.06303493507318e-07!GO:0005764;lysosome;5.06303493507318e-07!GO:0043038;amino acid activation;5.39274350293516e-07!GO:0006418;tRNA aminoacylation for protein translation;5.39274350293516e-07!GO:0043039;tRNA aminoacylation;5.39274350293516e-07!GO:0051187;cofactor catabolic process;5.45562282012432e-07!GO:0009109;coenzyme catabolic process;5.57126446785431e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.0784962969146e-07!GO:0051188;cofactor biosynthetic process;6.0784962969146e-07!GO:0031252;leading edge;7.34554116926067e-07!GO:0065002;intracellular protein transport across a membrane;7.77416926821084e-07!GO:0006099;tricarboxylic acid cycle;7.7752626942486e-07!GO:0046356;acetyl-CoA catabolic process;7.7752626942486e-07!GO:0031982;vesicle;8.3528397438361e-07!GO:0005798;Golgi-associated vesicle;8.54426397048376e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.61324646562585e-07!GO:0008654;phospholipid biosynthetic process;1.00417991287729e-06!GO:0003714;transcription corepressor activity;1.03333622208126e-06!GO:0031410;cytoplasmic vesicle;1.04172901817371e-06!GO:0032446;protein modification by small protein conjugation;1.06938052218904e-06!GO:0016567;protein ubiquitination;1.68919683314993e-06!GO:0005770;late endosome;1.94656248103001e-06!GO:0017038;protein import;1.95497764982586e-06!GO:0016491;oxidoreductase activity;2.15281759387143e-06!GO:0006752;group transfer coenzyme metabolic process;2.45393183597481e-06!GO:0008026;ATP-dependent helicase activity;2.74730441913326e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;2.75994581630539e-06!GO:0045786;negative regulation of progression through cell cycle;2.76362764280772e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.83042415772114e-06!GO:0016787;hydrolase activity;2.83255153539488e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.94222704409611e-06!GO:0006084;acetyl-CoA metabolic process;3.2829718568502e-06!GO:0016564;transcription repressor activity;3.44506562449345e-06!GO:0004298;threonine endopeptidase activity;3.85623649401663e-06!GO:0006281;DNA repair;4.39274539510159e-06!GO:0009719;response to endogenous stimulus;4.39874738923819e-06!GO:0005525;GTP binding;4.7801158418579e-06!GO:0005643;nuclear pore;4.9340465212824e-06!GO:0004386;helicase activity;5.1481291562252e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.68770262684775e-06!GO:0000278;mitotic cell cycle;6.01458964361532e-06!GO:0000139;Golgi membrane;6.69606191604529e-06!GO:0006323;DNA packaging;7.15070457377163e-06!GO:0051789;response to protein stimulus;7.60137984727486e-06!GO:0006986;response to unfolded protein;7.60137984727486e-06!GO:0030532;small nuclear ribonucleoprotein complex;8.26188835923256e-06!GO:0006613;cotranslational protein targeting to membrane;8.45243515591631e-06!GO:0030036;actin cytoskeleton organization and biogenesis;8.53555062452688e-06!GO:0045259;proton-transporting ATP synthase complex;9.49958333690351e-06!GO:0009108;coenzyme biosynthetic process;1.04659893839675e-05!GO:0008361;regulation of cell size;1.47085043101934e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.67069954048323e-05!GO:0000151;ubiquitin ligase complex;1.69593272999144e-05!GO:0005791;rough endoplasmic reticulum;1.91452576010442e-05!GO:0032561;guanyl ribonucleotide binding;1.99531924211884e-05!GO:0019001;guanyl nucleotide binding;1.99531924211884e-05!GO:0050789;regulation of biological process;2.06441173131246e-05!GO:0050657;nucleic acid transport;2.10618791450422e-05!GO:0051236;establishment of RNA localization;2.10618791450422e-05!GO:0050658;RNA transport;2.10618791450422e-05!GO:0030133;transport vesicle;2.12410338410154e-05!GO:0051276;chromosome organization and biogenesis;2.12410338410154e-05!GO:0006403;RNA localization;2.16251158885996e-05!GO:0003713;transcription coactivator activity;2.29604038921052e-05!GO:0016049;cell growth;2.7019364532798e-05!GO:0030867;rough endoplasmic reticulum membrane;2.71406619967317e-05!GO:0007010;cytoskeleton organization and biogenesis;2.80972282503769e-05!GO:0045454;cell redox homeostasis;2.89249513861642e-05!GO:0044440;endosomal part;2.9225597883505e-05!GO:0010008;endosome membrane;2.9225597883505e-05!GO:0031324;negative regulation of cellular metabolic process;3.17594426350068e-05!GO:0046930;pore complex;3.20325533883144e-05!GO:0006364;rRNA processing;3.41409597451048e-05!GO:0030029;actin filament-based process;3.86244853037005e-05!GO:0016072;rRNA metabolic process;5.05249434710614e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.35659880183406e-05!GO:0046474;glycerophospholipid biosynthetic process;5.47582558852835e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.99360991427289e-05!GO:0016568;chromatin modification;6.36960407384808e-05!GO:0000245;spliceosome assembly;6.50693654903584e-05!GO:0006793;phosphorus metabolic process;6.62297797174445e-05!GO:0006796;phosphate metabolic process;6.62297797174445e-05!GO:0005762;mitochondrial large ribosomal subunit;7.3934726580243e-05!GO:0000315;organellar large ribosomal subunit;7.3934726580243e-05!GO:0003697;single-stranded DNA binding;7.56338569771627e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.06844011362349e-05!GO:0031968;organelle outer membrane;8.39609905094634e-05!GO:0043566;structure-specific DNA binding;8.46117901626819e-05!GO:0001558;regulation of cell growth;8.56572410587572e-05!GO:0019867;outer membrane;8.72202758978872e-05!GO:0006612;protein targeting to membrane;8.72416918965507e-05!GO:0005905;coated pit;9.29917834545793e-05!GO:0016853;isomerase activity;9.72169421463906e-05!GO:0016563;transcription activator activity;0.000101747965418472!GO:0019899;enzyme binding;0.00010821790993718!GO:0016740;transferase activity;0.000114674970081722!GO:0005667;transcription factor complex;0.000121993435034448!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00013047368613581!GO:0003724;RNA helicase activity;0.000148593711919339!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000150394021544052!GO:0033116;ER-Golgi intermediate compartment membrane;0.000151969691111001!GO:0016859;cis-trans isomerase activity;0.000157553231526416!GO:0016310;phosphorylation;0.000190445132759149!GO:0043021;ribonucleoprotein binding;0.000223214370641044!GO:0009892;negative regulation of metabolic process;0.000223214370641044!GO:0005048;signal sequence binding;0.000223214370641044!GO:0065004;protein-DNA complex assembly;0.000223662939440837!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000223662939440837!GO:0015399;primary active transmembrane transporter activity;0.000223662939440837!GO:0008092;cytoskeletal protein binding;0.000263665528010453!GO:0008250;oligosaccharyl transferase complex;0.00026374748037726!GO:0051170;nuclear import;0.000265496590255358!GO:0006091;generation of precursor metabolites and energy;0.000296477891800725!GO:0051427;hormone receptor binding;0.000307680038331974!GO:0015630;microtubule cytoskeleton;0.000315030884266003!GO:0030663;COPI coated vesicle membrane;0.000354778154560263!GO:0030126;COPI vesicle coat;0.000354778154560263!GO:0005885;Arp2/3 protein complex;0.000354778154560263!GO:0046467;membrane lipid biosynthetic process;0.000364911769155651!GO:0043623;cellular protein complex assembly;0.00036726242729505!GO:0006606;protein import into nucleus;0.000370979364188963!GO:0004576;oligosaccharyl transferase activity;0.000386590098124742!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000394037691566766!GO:0000314;organellar small ribosomal subunit;0.000448965054273608!GO:0005763;mitochondrial small ribosomal subunit;0.000448965054273608!GO:0046489;phosphoinositide biosynthetic process;0.000451354679236164!GO:0005741;mitochondrial outer membrane;0.00047249240688562!GO:0051028;mRNA transport;0.000485040483515812!GO:0016779;nucleotidyltransferase activity;0.000486406008971833!GO:0005769;early endosome;0.000500648118344322!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000515040342596672!GO:0009165;nucleotide biosynthetic process;0.000558516489144315!GO:0035257;nuclear hormone receptor binding;0.000561537447955862!GO:0006260;DNA replication;0.000608895842132655!GO:0048522;positive regulation of cellular process;0.000630011153175798!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000661556134224219!GO:0007243;protein kinase cascade;0.00067415054788505!GO:0006839;mitochondrial transport;0.000712491533536634!GO:0016044;membrane organization and biogenesis;0.000761308212293099!GO:0007264;small GTPase mediated signal transduction;0.000833515741519043!GO:0051920;peroxiredoxin activity;0.00084361770241033!GO:0006650;glycerophospholipid metabolic process;0.000881359668861163!GO:0030137;COPI-coated vesicle;0.000881359668861163!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000922705997970214!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000947811853185942!GO:0006333;chromatin assembly or disassembly;0.00100620060782116!GO:0006818;hydrogen transport;0.00101443518538035!GO:0030659;cytoplasmic vesicle membrane;0.00104697889152603!GO:0048471;perinuclear region of cytoplasm;0.00107102121717971!GO:0030658;transport vesicle membrane;0.00108368074674022!GO:0015992;proton transport;0.0010935569991842!GO:0018196;peptidyl-asparagine modification;0.0010943139408985!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0010943139408985!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00117129854597824!GO:0030027;lamellipodium;0.00118474111742423!GO:0001726;ruffle;0.00120419855881832!GO:0016126;sterol biosynthetic process;0.00130967331321982!GO:0016481;negative regulation of transcription;0.00134071688029942!GO:0006414;translational elongation;0.00136737910969523!GO:0008610;lipid biosynthetic process;0.00146071104705258!GO:0008186;RNA-dependent ATPase activity;0.00147824924310226!GO:0043284;biopolymer biosynthetic process;0.0014985794260702!GO:0005694;chromosome;0.00151017383336399!GO:0051168;nuclear export;0.00151167770898414!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00153041949799915!GO:0065009;regulation of a molecular function;0.00162429201341159!GO:0006626;protein targeting to mitochondrion;0.0016795078237698!GO:0006891;intra-Golgi vesicle-mediated transport;0.00179143404009831!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00181437792596686!GO:0022890;inorganic cation transmembrane transporter activity;0.00189591669093632!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00193283305228994!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00193283305228994!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00193283305228994!GO:0007050;cell cycle arrest;0.00196566943388297!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00199986064165725!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0020005341627932!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0020005341627932!GO:0030176;integral to endoplasmic reticulum membrane;0.00214503796854181!GO:0043492;ATPase activity, coupled to movement of substances;0.00215684826282227!GO:0048500;signal recognition particle;0.00247625778173157!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00247625778173157!GO:0022403;cell cycle phase;0.00247924660517841!GO:0000087;M phase of mitotic cell cycle;0.00251803758422913!GO:0044262;cellular carbohydrate metabolic process;0.00271113724270502!GO:0030118;clathrin coat;0.002780460224203!GO:0043681;protein import into mitochondrion;0.002780460224203!GO:0016363;nuclear matrix;0.00294038329355625!GO:0042802;identical protein binding;0.00295572095170333!GO:0030521;androgen receptor signaling pathway;0.00298939488307659!GO:0044433;cytoplasmic vesicle part;0.00303217531054645!GO:0008632;apoptotic program;0.00303990768316736!GO:0003729;mRNA binding;0.00305009824711417!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0030906701739356!GO:0007067;mitosis;0.00311413255941089!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00311413255941089!GO:0003899;DNA-directed RNA polymerase activity;0.00316969840222617!GO:0040008;regulation of growth;0.00322843823072334!GO:0019843;rRNA binding;0.00326435728603508!GO:0051252;regulation of RNA metabolic process;0.00329915257401092!GO:0030660;Golgi-associated vesicle membrane;0.00332958822648485!GO:0005813;centrosome;0.00364330062638361!GO:0048468;cell development;0.00371833849036903!GO:0065007;biological regulation;0.00378471829325555!GO:0004004;ATP-dependent RNA helicase activity;0.00378471829325555!GO:0000785;chromatin;0.00378551936713616!GO:0043488;regulation of mRNA stability;0.00391000616474273!GO:0043487;regulation of RNA stability;0.00391000616474273!GO:0030132;clathrin coat of coated pit;0.00404493271669245!GO:0006497;protein amino acid lipidation;0.00427580356934848!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00447193444527761!GO:0045047;protein targeting to ER;0.00447193444527761!GO:0007040;lysosome organization and biogenesis;0.00455424951364112!GO:0007006;mitochondrial membrane organization and biogenesis;0.00457653836152706!GO:0048487;beta-tubulin binding;0.00465059545290545!GO:0030384;phosphoinositide metabolic process;0.00466348192360564!GO:0033673;negative regulation of kinase activity;0.00469123814474014!GO:0006469;negative regulation of protein kinase activity;0.00469123814474014!GO:0006509;membrane protein ectodomain proteolysis;0.00471621863203715!GO:0033619;membrane protein proteolysis;0.00471621863203715!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00473578633717575!GO:0051329;interphase of mitotic cell cycle;0.00473578633717575!GO:0004177;aminopeptidase activity;0.00487252348106458!GO:0030134;ER to Golgi transport vesicle;0.00491741955351218!GO:0012506;vesicle membrane;0.00515159113194086!GO:0030127;COPII vesicle coat;0.00526342690384152!GO:0012507;ER to Golgi transport vesicle membrane;0.00526342690384152!GO:0051128;regulation of cellular component organization and biogenesis;0.00534340204953391!GO:0008047;enzyme activator activity;0.00578727108285154!GO:0042158;lipoprotein biosynthetic process;0.00600376311234689!GO:0051348;negative regulation of transferase activity;0.00627736927468662!GO:0031072;heat shock protein binding;0.00633941996988009!GO:0005815;microtubule organizing center;0.00637652299979336!GO:0005869;dynactin complex;0.00662471502826542!GO:0017166;vinculin binding;0.00670473408997384!GO:0006979;response to oxidative stress;0.00685083531489002!GO:0009967;positive regulation of signal transduction;0.00691410112484177!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00704780759728463!GO:0044427;chromosomal part;0.00721129556385944!GO:0006892;post-Golgi vesicle-mediated transport;0.00732212707989492!GO:0051301;cell division;0.00754089873918157!GO:0016251;general RNA polymerase II transcription factor activity;0.0075428712444275!GO:0051087;chaperone binding;0.0075428712444275!GO:0006695;cholesterol biosynthetic process;0.00798371988476042!GO:0045792;negative regulation of cell size;0.00798614687578209!GO:0030518;steroid hormone receptor signaling pathway;0.00821536425955352!GO:0051325;interphase;0.00874289077993062!GO:0003690;double-stranded DNA binding;0.0088240852137357!GO:0007033;vacuole organization and biogenesis;0.00943074717688496!GO:0016197;endosome transport;0.00951989587988922!GO:0008312;7S RNA binding;0.00951989587988922!GO:0006984;ER-nuclear signaling pathway;0.00954083116049097!GO:0006506;GPI anchor biosynthetic process;0.00958942638006779!GO:0005774;vacuolar membrane;0.00964643866668032!GO:0045045;secretory pathway;0.00966424368356694!GO:0007569;cell aging;0.00970256013562893!GO:0031902;late endosome membrane;0.00980044461639942!GO:0003746;translation elongation factor activity;0.00980044461639942!GO:0006643;membrane lipid metabolic process;0.00983588173460735!GO:0035258;steroid hormone receptor binding;0.0102054939063217!GO:0050811;GABA receptor binding;0.0104765301875234!GO:0006740;NADPH regeneration;0.0104807552332433!GO:0006098;pentose-phosphate shunt;0.0104807552332433!GO:0046519;sphingoid metabolic process;0.0108669404403731!GO:0030308;negative regulation of cell growth;0.0108786096299173!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0110021775943438!GO:0015002;heme-copper terminal oxidase activity;0.0110021775943438!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0110021775943438!GO:0004129;cytochrome-c oxidase activity;0.0110021775943438!GO:0051287;NAD binding;0.0112279246081811!GO:0019222;regulation of metabolic process;0.0113826563417272!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0115118138437303!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0115118138437303!GO:0006383;transcription from RNA polymerase III promoter;0.0116774610659149!GO:0006352;transcription initiation;0.0125875681122754!GO:0030125;clathrin vesicle coat;0.012639116206824!GO:0030665;clathrin coated vesicle membrane;0.012639116206824!GO:0006595;polyamine metabolic process;0.0130897309786139!GO:0006402;mRNA catabolic process;0.0137025531494785!GO:0006505;GPI anchor metabolic process;0.0138743537636993!GO:0005912;adherens junction;0.0138998819720115!GO:0000059;protein import into nucleus, docking;0.014249569672964!GO:0000049;tRNA binding;0.0143730955319739!GO:0007021;tubulin folding;0.0144338047722073!GO:0031124;mRNA 3'-end processing;0.0145556184294871!GO:0016272;prefoldin complex;0.0145556184294871!GO:0007034;vacuolar transport;0.0151698161678513!GO:0008320;protein transmembrane transporter activity;0.01537248823652!GO:0003779;actin binding;0.0155995899638642!GO:0008180;signalosome;0.0158020844585842!GO:0008139;nuclear localization sequence binding;0.0161182948212466!GO:0008286;insulin receptor signaling pathway;0.0161426611756463!GO:0050681;androgen receptor binding;0.0163067165277182!GO:0048518;positive regulation of biological process;0.0163194925185184!GO:0045936;negative regulation of phosphate metabolic process;0.0164264295383793!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0164507947923714!GO:0006672;ceramide metabolic process;0.0165777714738731!GO:0005862;muscle thin filament tropomyosin;0.016661231537839!GO:0000209;protein polyubiquitination;0.0168374521215172!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0182287907508754!GO:0030880;RNA polymerase complex;0.0189433419856334!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0191144078876068!GO:0000096;sulfur amino acid metabolic process;0.0192970235258001!GO:0030119;AP-type membrane coat adaptor complex;0.0193187724837379!GO:0031543;peptidyl-proline dioxygenase activity;0.0194674867226506!GO:0003711;transcription elongation regulator activity;0.0194679482852188!GO:0033559;unsaturated fatty acid metabolic process;0.0204280409977379!GO:0006636;unsaturated fatty acid biosynthetic process;0.0204280409977379!GO:0050790;regulation of catalytic activity;0.0207166329383328!GO:0046483;heterocycle metabolic process;0.0210729524537461!GO:0000339;RNA cap binding;0.0211080868910239!GO:0035035;histone acetyltransferase binding;0.0211924860048114!GO:0008234;cysteine-type peptidase activity;0.0216495420338595!GO:0005096;GTPase activator activity;0.021856916192993!GO:0008022;protein C-terminus binding;0.0218684276702543!GO:0044437;vacuolar part;0.0218684276702543!GO:0030503;regulation of cell redox homeostasis;0.0220165566107694!GO:0045892;negative regulation of transcription, DNA-dependent;0.0220165566107694!GO:0043022;ribosome binding;0.0220679278724412!GO:0019798;procollagen-proline dioxygenase activity;0.0221216175782464!GO:0045893;positive regulation of transcription, DNA-dependent;0.0221216175782464!GO:0005832;chaperonin-containing T-complex;0.0229269738870555!GO:0006644;phospholipid metabolic process;0.0230084456711778!GO:0015631;tubulin binding;0.024138568611151!GO:0008033;tRNA processing;0.0245016472885098!GO:0031529;ruffle organization and biogenesis;0.0245679941747656!GO:0006334;nucleosome assembly;0.0245728992959755!GO:0031625;ubiquitin protein ligase binding;0.0255236512111323!GO:0008147;structural constituent of bone;0.026124706340353!GO:0000082;G1/S transition of mitotic cell cycle;0.0263183348162265!GO:0001725;stress fiber;0.0268520188507024!GO:0032432;actin filament bundle;0.0268520188507024!GO:0007030;Golgi organization and biogenesis;0.0268845971704335!GO:0005684;U2-dependent spliceosome;0.0269206106051057!GO:0005938;cell cortex;0.0269445482309719!GO:0005765;lysosomal membrane;0.0272923337874112!GO:0007265;Ras protein signal transduction;0.0273280866327626!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0279626097154756!GO:0030131;clathrin adaptor complex;0.0282928199644789!GO:0044452;nucleolar part;0.0285163914014624!GO:0006739;NADP metabolic process;0.0286393807409483!GO:0006611;protein export from nucleus;0.0289562028268457!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0292286699864017!GO:0003684;damaged DNA binding;0.0293227116203933!GO:0006082;organic acid metabolic process;0.0294082193912236!GO:0007160;cell-matrix adhesion;0.0294174565863635!GO:0019752;carboxylic acid metabolic process;0.0297035142539785!GO:0045941;positive regulation of transcription;0.0297589983507239!GO:0031418;L-ascorbic acid binding;0.0301382970332414!GO:0031901;early endosome membrane;0.0301646547732438!GO:0044420;extracellular matrix part;0.0318210934655528!GO:0031589;cell-substrate adhesion;0.0318765930742333!GO:0005637;nuclear inner membrane;0.0325212516119156!GO:0006720;isoprenoid metabolic process;0.0327675280615576!GO:0005581;collagen;0.0329408096949275!GO:0030522;intracellular receptor-mediated signaling pathway;0.0331226701748849!GO:0006302;double-strand break repair;0.0331226701748849!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0334601946327852!GO:0000428;DNA-directed RNA polymerase complex;0.0334601946327852!GO:0031497;chromatin assembly;0.0336297673060739!GO:0022408;negative regulation of cell-cell adhesion;0.0349028130421438!GO:0006289;nucleotide-excision repair;0.0350447877062959!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0357028742939862!GO:0003702;RNA polymerase II transcription factor activity;0.036635031530148!GO:0003923;GPI-anchor transamidase activity;0.0370616186515433!GO:0016255;attachment of GPI anchor to protein;0.0370616186515433!GO:0042765;GPI-anchor transamidase complex;0.0370616186515433!GO:0007041;lysosomal transport;0.037115161818453!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0371647810252478!GO:0004197;cysteine-type endopeptidase activity;0.0382737780314883!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0386897777777081!GO:0051336;regulation of hydrolase activity;0.039454691321879!GO:0045926;negative regulation of growth;0.0394622674048633!GO:0042326;negative regulation of phosphorylation;0.0394622674048633!GO:0047485;protein N-terminus binding;0.0395465687987407!GO:0003682;chromatin binding;0.0397201939020318!GO:0008637;apoptotic mitochondrial changes;0.0400951838251158!GO:0046426;negative regulation of JAK-STAT cascade;0.0403118422803703!GO:0030041;actin filament polymerization;0.0403773070464128!GO:0008168;methyltransferase activity;0.0408951630752133!GO:0006518;peptide metabolic process;0.0415023754598888!GO:0030508;thiol-disulfide exchange intermediate activity;0.0417518516969854!GO:0008154;actin polymerization and/or depolymerization;0.0420834125462643!GO:0005925;focal adhesion;0.0423743140931715!GO:0006401;RNA catabolic process;0.0424428674907897!GO:0005099;Ras GTPase activator activity;0.0426439862015293!GO:0004228;gelatinase A activity;0.0429186575114177!GO:0001955;blood vessel maturation;0.0429186575114177!GO:0000075;cell cycle checkpoint;0.0429881386853562!GO:0006607;NLS-bearing substrate import into nucleus;0.0430747863412108!GO:0006897;endocytosis;0.0435661903553531!GO:0010324;membrane invagination;0.0435661903553531!GO:0016741;transferase activity, transferring one-carbon groups;0.0435661903553531!GO:0030032;lamellipodium biogenesis;0.0437954308759238!GO:0006405;RNA export from nucleus;0.0439520154366949!GO:0008652;amino acid biosynthetic process;0.0450919980865397!GO:0043086;negative regulation of catalytic activity;0.0450919980865397!GO:0006767;water-soluble vitamin metabolic process;0.0456494427621254!GO:0031371;ubiquitin conjugating enzyme complex;0.0462533239199617!GO:0008538;proteasome activator activity;0.0463643896691403!GO:0000287;magnesium ion binding;0.0465379363727876!GO:0031123;RNA 3'-end processing;0.0466109151027643!GO:0030140;trans-Golgi network transport vesicle;0.0477525744226088!GO:0031301;integral to organelle membrane;0.0482493461396478!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0484154960610542!GO:0005784;translocon complex;0.04870637302232!GO:0051270;regulation of cell motility;0.0487826131754969!GO:0004674;protein serine/threonine kinase activity;0.0488268693742027!GO:0006354;RNA elongation;0.0491110013884969!GO:0008243;plasminogen activator activity;0.0491968983883932!GO:0001952;regulation of cell-matrix adhesion;0.0492417100098308!GO:0030055;cell-matrix junction;0.049646574179571!GO:0003756;protein disulfide isomerase activity;0.0497776452617253!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0497776452617253!GO:0043495;protein anchor;0.0499288730156328 | |||
|sample_id=11547 | |sample_id=11547 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=amnion | |sample_tissue=amnion | ||
|top_motifs=SRF:2.00796676639;ESR1:1.96790838793;TAL1_TCF{3,4,12}:1.5826099249;TEF:1.42299176955;SPZ1:1.22676159024;TEAD1:1.22245378617;LHX3,4:1.18775126844;SREBF1,2:1.17535875676;ZNF384:1.16701060535;HSF1,2:1.16255086812;NFATC1..3:1.15323081991;GCM1,2:1.13054902625;UFEwm:1.12430174588;GZF1:1.09007195735;GATA4:1.08063681919;NR3C1:1.07195780238;MAFB:1.05926514128;HES1:1.05777983067;ZNF238:1.04248498683;KLF4:1.0397009769;TP53:1.01946850815;HMGA1,2:0.998182860075;GFI1B:0.978334800563;PRDM1:0.944457656117;GTF2I:0.938779723346;EVI1:0.926736584224;HBP1_HMGB_SSRP1_UBTF:0.877235808765;TLX1..3_NFIC{dimer}:0.874251144128;TFAP2{A,C}:0.803222094488;TFAP4:0.788489660401;CDC5L:0.774868887163;GLI1..3:0.770410830802;GTF2A1,2:0.747223996918;FOXD3:0.736566592262;MYBL2:0.727116341318;SMAD1..7,9:0.723482604901;PAX1,9:0.698626377143;TBX4,5:0.689328158813;PATZ1:0.683078868081;RXR{A,B,G}:0.630427422989;MAZ:0.621762447084;SOX17:0.606983178469;ZBTB6:0.592027592412;MZF1:0.584026388145;TFCP2:0.582774276519;HMX1:0.562052368341;ALX4:0.55474342919;DBP:0.536307894912;NHLH1,2:0.527097591676;ARID5B:0.525508903933;ATF6:0.509995713127;EBF1:0.50126877178;NKX6-1,2:0.49749834534;NR1H4:0.489526499969;NFE2L1:0.450116338787;ZNF148:0.442661285668;MYFfamily:0.438232932264;TFAP2B:0.410061970112;HAND1,2:0.401790824801;IKZF1:0.389683916001;NKX3-1:0.371277315616;NKX2-2,8:0.361894210777;MTE{core}:0.356213041027;bHLH_family:0.327233389765;HIC1:0.321762169474;SOX2:0.30553427381;CRX:0.301921218464;HOX{A6,A7,B6,B7}:0.284903245769;EN1,2:0.279517917154;XBP1:0.277218917997;TBP:0.263396765447;ZIC1..3:0.259045260007;MEF2{A,B,C,D}:0.25262381727;NFE2L2:0.248128609042;ATF2:0.237799410213;RREB1:0.216814477188;PAX8:0.206842343122;PAX5:0.205910285721;EGR1..3:0.201254803883;RXRA_VDR{dimer}:0.198354878625;NR6A1:0.189826257608;PAX4:0.182814802117;HOX{A4,D4}:0.180294599095;IRF1,2:0.175374121509;ZFP161:0.165292143696;ZNF423:0.15970530672;NFIX:0.15754426091;TOPORS:0.147179671552;NANOG{mouse}:0.137148794759;XCPE1{core}:0.122540862969;HLF:0.120040997684;SP1:0.109422333087;POU3F1..4:0.101336564085;HNF1A:0.0933296448187;ADNP_IRX_SIX_ZHX:0.0890373298143;MED-1{core}:0.0820812981048;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0670229824108;BACH2:0.0346979973332;HOX{A5,B5}:0.0277419162608;AIRE:0.0194578838371;HNF4A_NR2F1,2:0.0111324954392;LEF1_TCF7_TCF7L1,2:-0.00395101393639;FOXL1:-0.00862298788973;ELK1,4_GABP{A,B1}:-0.0361005621223;HIF1A:-0.0366490670944;NRF1:-0.0399071850803;SOX5:-0.040948804184;NKX2-3_NKX2-5:-0.055705917161;CEBPA,B_DDIT3:-0.057398546662;AHR_ARNT_ARNT2:-0.0937555287886;NFE2:-0.0952424116889;ESRRA:-0.109708380815;PAX3,7:-0.133693899482;PPARG:-0.148806273704;ZNF143:-0.15594907735;REST:-0.184236346625;POU6F1:-0.19484384212;FOS_FOS{B,L1}_JUN{B,D}:-0.207544461207;POU5F1:-0.209815021897;NKX3-2:-0.217660798184;FOSL2:-0.234758297336;STAT1,3:-0.235339565902;FOXO1,3,4:-0.239449717127;YY1:-0.254504501945;FOXM1:-0.256564822399;IRF7:-0.267524096705;ONECUT1,2:-0.270153863161;FOXA2:-0.279897665592;SPIB:-0.292630633033;TFDP1:-0.309573700856;PAX2:-0.310782939657;HOXA9_MEIS1:-0.336809725358;NFKB1_REL_RELA:-0.344071375604;MYB:-0.359728377429;DMAP1_NCOR{1,2}_SMARC:-0.36007095717;FOXN1:-0.372120220934;RFX1:-0.39937443688;RFX2..5_RFXANK_RFXAP:-0.400446376411;SPI1:-0.401407370053;FOX{D1,D2}:-0.413354435519;CREB1:-0.417267127723;ETS1,2:-0.432664181554;TLX2:-0.440836238293;ATF5_CREB3:-0.445034724742;AR:-0.454145141106;IKZF2:-0.497027740366;T:-0.497400538978;ELF1,2,4:-0.537230691743;MTF1:-0.542765034198;NR5A1,2:-0.557754776118;RUNX1..3:-0.564481075758;TGIF1:-0.581315838862;SNAI1..3:-0.585512937406;FOXQ1:-0.604576170106;PAX6:-0.605482982109;NKX2-1,4:-0.613183487727;EP300:-0.620583221006;PRRX1,2:-0.631541664452;VSX1,2:-0.66313900659;E2F1..5:-0.686101392398;GFI1:-0.69481135287;STAT2,4,6:-0.702530026974;ZBTB16:-0.718695654765;ZEB1:-0.725878289486;OCT4_SOX2{dimer}:-0.735673528938;CUX2:-0.73704508207;SOX{8,9,10}:-0.740817597294;CDX1,2,4:-0.754012398859;FOXP1:-0.756847245331;FOX{I1,J2}:-0.760085184165;JUN:-0.769674436421;LMO2:-0.783112372822;MYOD1:-0.80673591587;NFY{A,B,C}:-0.810622815616;RORA:-0.814847943616;NFIL3:-0.815603926155;BPTF:-0.838512019491;GATA6:-0.842866670362;RBPJ:-0.850174623983;ATF4:-0.889969240843;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.903194790404;PITX1..3:-0.985846549248;POU1F1:-0.987385118171;BREu{core}:-0.999679385278;FOX{F1,F2,J1}:-1.00961372013;FOXP3:-1.05078723943;STAT5{A,B}:-1.06916040831;PBX1:-1.24645568228;NANOG:-1.27991109827;POU2F1..3:-1.322883976;PDX1:-1.33554339963;ALX1:-1.44900298793 | |top_motifs=SRF:2.00796676639;ESR1:1.96790838793;TAL1_TCF{3,4,12}:1.5826099249;TEF:1.42299176955;SPZ1:1.22676159024;TEAD1:1.22245378617;LHX3,4:1.18775126844;SREBF1,2:1.17535875676;ZNF384:1.16701060535;HSF1,2:1.16255086812;NFATC1..3:1.15323081991;GCM1,2:1.13054902625;UFEwm:1.12430174588;GZF1:1.09007195735;GATA4:1.08063681919;NR3C1:1.07195780238;MAFB:1.05926514128;HES1:1.05777983067;ZNF238:1.04248498683;KLF4:1.0397009769;TP53:1.01946850815;HMGA1,2:0.998182860075;GFI1B:0.978334800563;PRDM1:0.944457656117;GTF2I:0.938779723346;EVI1:0.926736584224;HBP1_HMGB_SSRP1_UBTF:0.877235808765;TLX1..3_NFIC{dimer}:0.874251144128;TFAP2{A,C}:0.803222094488;TFAP4:0.788489660401;CDC5L:0.774868887163;GLI1..3:0.770410830802;GTF2A1,2:0.747223996918;FOXD3:0.736566592262;MYBL2:0.727116341318;SMAD1..7,9:0.723482604901;PAX1,9:0.698626377143;TBX4,5:0.689328158813;PATZ1:0.683078868081;RXR{A,B,G}:0.630427422989;MAZ:0.621762447084;SOX17:0.606983178469;ZBTB6:0.592027592412;MZF1:0.584026388145;TFCP2:0.582774276519;HMX1:0.562052368341;ALX4:0.55474342919;DBP:0.536307894912;NHLH1,2:0.527097591676;ARID5B:0.525508903933;ATF6:0.509995713127;EBF1:0.50126877178;NKX6-1,2:0.49749834534;NR1H4:0.489526499969;NFE2L1:0.450116338787;ZNF148:0.442661285668;MYFfamily:0.438232932264;TFAP2B:0.410061970112;HAND1,2:0.401790824801;IKZF1:0.389683916001;NKX3-1:0.371277315616;NKX2-2,8:0.361894210777;MTE{core}:0.356213041027;bHLH_family:0.327233389765;HIC1:0.321762169474;SOX2:0.30553427381;CRX:0.301921218464;HOX{A6,A7,B6,B7}:0.284903245769;EN1,2:0.279517917154;XBP1:0.277218917997;TBP:0.263396765447;ZIC1..3:0.259045260007;MEF2{A,B,C,D}:0.25262381727;NFE2L2:0.248128609042;ATF2:0.237799410213;RREB1:0.216814477188;PAX8:0.206842343122;PAX5:0.205910285721;EGR1..3:0.201254803883;RXRA_VDR{dimer}:0.198354878625;NR6A1:0.189826257608;PAX4:0.182814802117;HOX{A4,D4}:0.180294599095;IRF1,2:0.175374121509;ZFP161:0.165292143696;ZNF423:0.15970530672;NFIX:0.15754426091;TOPORS:0.147179671552;NANOG{mouse}:0.137148794759;XCPE1{core}:0.122540862969;HLF:0.120040997684;SP1:0.109422333087;POU3F1..4:0.101336564085;HNF1A:0.0933296448187;ADNP_IRX_SIX_ZHX:0.0890373298143;MED-1{core}:0.0820812981048;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0670229824108;BACH2:0.0346979973332;HOX{A5,B5}:0.0277419162608;AIRE:0.0194578838371;HNF4A_NR2F1,2:0.0111324954392;LEF1_TCF7_TCF7L1,2:-0.00395101393639;FOXL1:-0.00862298788973;ELK1,4_GABP{A,B1}:-0.0361005621223;HIF1A:-0.0366490670944;NRF1:-0.0399071850803;SOX5:-0.040948804184;NKX2-3_NKX2-5:-0.055705917161;CEBPA,B_DDIT3:-0.057398546662;AHR_ARNT_ARNT2:-0.0937555287886;NFE2:-0.0952424116889;ESRRA:-0.109708380815;PAX3,7:-0.133693899482;PPARG:-0.148806273704;ZNF143:-0.15594907735;REST:-0.184236346625;POU6F1:-0.19484384212;FOS_FOS{B,L1}_JUN{B,D}:-0.207544461207;POU5F1:-0.209815021897;NKX3-2:-0.217660798184;FOSL2:-0.234758297336;STAT1,3:-0.235339565902;FOXO1,3,4:-0.239449717127;YY1:-0.254504501945;FOXM1:-0.256564822399;IRF7:-0.267524096705;ONECUT1,2:-0.270153863161;FOXA2:-0.279897665592;SPIB:-0.292630633033;TFDP1:-0.309573700856;PAX2:-0.310782939657;HOXA9_MEIS1:-0.336809725358;NFKB1_REL_RELA:-0.344071375604;MYB:-0.359728377429;DMAP1_NCOR{1,2}_SMARC:-0.36007095717;FOXN1:-0.372120220934;RFX1:-0.39937443688;RFX2..5_RFXANK_RFXAP:-0.400446376411;SPI1:-0.401407370053;FOX{D1,D2}:-0.413354435519;CREB1:-0.417267127723;ETS1,2:-0.432664181554;TLX2:-0.440836238293;ATF5_CREB3:-0.445034724742;AR:-0.454145141106;IKZF2:-0.497027740366;T:-0.497400538978;ELF1,2,4:-0.537230691743;MTF1:-0.542765034198;NR5A1,2:-0.557754776118;RUNX1..3:-0.564481075758;TGIF1:-0.581315838862;SNAI1..3:-0.585512937406;FOXQ1:-0.604576170106;PAX6:-0.605482982109;NKX2-1,4:-0.613183487727;EP300:-0.620583221006;PRRX1,2:-0.631541664452;VSX1,2:-0.66313900659;E2F1..5:-0.686101392398;GFI1:-0.69481135287;STAT2,4,6:-0.702530026974;ZBTB16:-0.718695654765;ZEB1:-0.725878289486;OCT4_SOX2{dimer}:-0.735673528938;CUX2:-0.73704508207;SOX{8,9,10}:-0.740817597294;CDX1,2,4:-0.754012398859;FOXP1:-0.756847245331;FOX{I1,J2}:-0.760085184165;JUN:-0.769674436421;LMO2:-0.783112372822;MYOD1:-0.80673591587;NFY{A,B,C}:-0.810622815616;RORA:-0.814847943616;NFIL3:-0.815603926155;BPTF:-0.838512019491;GATA6:-0.842866670362;RBPJ:-0.850174623983;ATF4:-0.889969240843;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.903194790404;PITX1..3:-0.985846549248;POU1F1:-0.987385118171;BREu{core}:-0.999679385278;FOX{F1,F2,J1}:-1.00961372013;FOXP3:-1.05078723943;STAT5{A,B}:-1.06916040831;PBX1:-1.24645568228;NANOG:-1.27991109827;POU2F1..3:-1.322883976;PDX1:-1.33554339963;ALX1:-1.44900298793 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11547-120B8;search_select_hide=table117:FF:11547-120B8 | |||
}} | }} | ||
Latest revision as of 18:08, 4 June 2020
| Name: | Mesenchymal Stem Cells - amniotic membrane, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11349 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11349
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11349
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.115 |
| 10 | 10 | 0.616 |
| 100 | 100 | 0.257 |
| 101 | 101 | 0.615 |
| 102 | 102 | 0.0823 |
| 103 | 103 | 0.704 |
| 104 | 104 | 0.752 |
| 105 | 105 | 0.181 |
| 106 | 106 | 0.458 |
| 107 | 107 | 0.399 |
| 108 | 108 | 0.958 |
| 109 | 109 | 0.919 |
| 11 | 11 | 0.461 |
| 110 | 110 | 0.92 |
| 111 | 111 | 0.472 |
| 112 | 112 | 0.542 |
| 113 | 113 | 0.656 |
| 114 | 114 | 0.576 |
| 115 | 115 | 0.0309 |
| 116 | 116 | 0.0888 |
| 117 | 117 | 0.32 |
| 118 | 118 | 0.441 |
| 119 | 119 | 0.439 |
| 12 | 12 | 0.326 |
| 120 | 120 | 0.288 |
| 121 | 121 | 0.739 |
| 122 | 122 | 0.254 |
| 123 | 123 | 0.0045 |
| 124 | 124 | 0.321 |
| 125 | 125 | 0.319 |
| 126 | 126 | 0.441 |
| 127 | 127 | 0.969 |
| 128 | 128 | 0.972 |
| 129 | 129 | 0.0893 |
| 13 | 13 | 0.0896 |
| 130 | 130 | 0.266 |
| 131 | 131 | 0.275 |
| 132 | 132 | 0.79 |
| 133 | 133 | 0.436 |
| 134 | 134 | 0.383 |
| 135 | 135 | 0.382 |
| 136 | 136 | 0.569 |
| 137 | 137 | 0.166 |
| 138 | 138 | 0.791 |
| 139 | 139 | 0.765 |
| 14 | 14 | 0.291 |
| 140 | 140 | 0.208 |
| 141 | 141 | 0.0541 |
| 142 | 142 | 0.805 |
| 143 | 143 | 0.655 |
| 144 | 144 | 0.826 |
| 145 | 145 | 0.217 |
| 146 | 146 | 0.555 |
| 147 | 147 | 0.111 |
| 148 | 148 | 0.343 |
| 149 | 149 | 0.0182 |
| 15 | 15 | 0.219 |
| 150 | 150 | 0.42 |
| 151 | 151 | 0.74 |
| 152 | 152 | 0.018 |
| 153 | 153 | 0.522 |
| 154 | 154 | 0.395 |
| 155 | 155 | 0.00686 |
| 156 | 156 | 0.598 |
| 157 | 157 | 0.637 |
| 158 | 158 | 0.0517 |
| 159 | 159 | 0.746 |
| 16 | 16 | 0.163 |
| 160 | 160 | 0.755 |
| 161 | 161 | 0.2 |
| 162 | 162 | 0.311 |
| 163 | 163 | 0.94 |
| 164 | 164 | 0.73 |
| 165 | 165 | 0.413 |
| 166 | 166 | 0.0486 |
| 167 | 167 | 0.812 |
| 168 | 168 | 0.919 |
| 169 | 169 | 0.142 |
| 17 | 17 | 0.94 |
| 18 | 18 | 0.287 |
| 19 | 19 | 0.0182 |
| 2 | 2 | 0.127 |
| 20 | 20 | 0.238 |
| 21 | 21 | 0.107 |
| 22 | 22 | 0.339 |
| 23 | 23 | 0.527 |
| 24 | 24 | 0.774 |
| 25 | 25 | 0.0763 |
| 26 | 26 | 0.292 |
| 27 | 27 | 0.342 |
| 28 | 28 | 0.382 |
| 29 | 29 | 0.813 |
| 3 | 3 | 0.524 |
| 30 | 30 | 0.151 |
| 31 | 31 | 0.692 |
| 32 | 32 | 2.95237e-7 |
| 33 | 33 | 0.28 |
| 34 | 34 | 0.41 |
| 35 | 35 | 0.733 |
| 36 | 36 | 0.0504 |
| 37 | 37 | 0.358 |
| 38 | 38 | 0.238 |
| 39 | 39 | 0.223 |
| 4 | 4 | 0.441 |
| 40 | 40 | 0.333 |
| 41 | 41 | 0.232 |
| 42 | 42 | 0.166 |
| 43 | 43 | 0.574 |
| 44 | 44 | 0.4 |
| 45 | 45 | 0.335 |
| 46 | 46 | 0.878 |
| 47 | 47 | 0.373 |
| 48 | 48 | 0.418 |
| 49 | 49 | 0.418 |
| 5 | 5 | 0.457 |
| 50 | 50 | 0.667 |
| 51 | 51 | 0.955 |
| 52 | 52 | 0.973 |
| 53 | 53 | 0.179 |
| 54 | 54 | 0.541 |
| 55 | 55 | 0.192 |
| 56 | 56 | 0.833 |
| 57 | 57 | 0.537 |
| 58 | 58 | 0.173 |
| 59 | 59 | 0.382 |
| 6 | 6 | 0.23 |
| 60 | 60 | 0.39 |
| 61 | 61 | 0.927 |
| 62 | 62 | 0.247 |
| 63 | 63 | 0.901 |
| 64 | 64 | 0.306 |
| 65 | 65 | 0.837 |
| 66 | 66 | 0.47 |
| 67 | 67 | 0.265 |
| 68 | 68 | 0.891 |
| 69 | 69 | 0.523 |
| 7 | 7 | 0.0661 |
| 70 | 70 | 0.756 |
| 71 | 71 | 0.977 |
| 72 | 72 | 0.872 |
| 73 | 73 | 0.0539 |
| 74 | 74 | 0.412 |
| 75 | 75 | 0.694 |
| 76 | 76 | 0.254 |
| 77 | 77 | 0.16 |
| 78 | 78 | 0.263 |
| 79 | 79 | 0.00404 |
| 8 | 8 | 0.72 |
| 80 | 80 | 0.271 |
| 81 | 81 | 0.863 |
| 82 | 82 | 0.358 |
| 83 | 83 | 0.0861 |
| 84 | 84 | 0.706 |
| 85 | 85 | 0.384 |
| 86 | 86 | 0.606 |
| 87 | 87 | 0.488 |
| 88 | 88 | 0.943 |
| 89 | 89 | 0.28 |
| 9 | 9 | 0.479 |
| 90 | 90 | 0.488 |
| 91 | 91 | 0.888 |
| 92 | 92 | 0.589 |
| 93 | 93 | 0.547 |
| 94 | 94 | 0.909 |
| 95 | 95 | 0.801 |
| 96 | 96 | 0.716 |
| 97 | 97 | 0.538 |
| 98 | 98 | 0.255 |
| 99 | 99 | 0.0413 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11349
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000276 human amniotic membrane cell- fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000276 (human amniotic membrane cell- fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
