FF:10486-107A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004799 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008017;DRR008889;DRZ000314;DRZ001699;DRZ011664;DRZ013049 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000082,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1749 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0100353,FF:0101120,FF:0100762,FF:0102202,FF:0103001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10486-107A9 | |id=FF:10486-107A9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103001 | ||
|is_obsolete= | |||
|library_id=CNhs11273 | |||
|library_id_phase_based=2:CNhs11273 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10486 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10486 | |||
|name=squamous cell lung carcinoma cell line:EBC-1 | |name=squamous cell lung carcinoma cell line:EBC-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11273,LSID758,release008,COMPLETED | |profile_hcage=CNhs11273,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=27.237 | |rna_weight_ug=27.237 | ||
|sample_age=69 | |sample_age=69 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1965 | |sample_cell_catalog=RCB1965 | ||
|sample_cell_line=EBC-1 | |sample_cell_line=EBC-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.05101916351277e-273!GO:0043231;intracellular membrane-bound organelle;1.70457420802017e-227!GO:0043227;membrane-bound organelle;1.84217232148045e-227!GO:0043226;organelle;2.41937785967147e-227!GO:0043229;intracellular organelle;1.16293559357367e-226!GO:0005737;cytoplasm;1.04283356586186e-183!GO:0044422;organelle part;6.28597352915808e-157!GO:0044446;intracellular organelle part;2.0129084648919e-155!GO:0044444;cytoplasmic part;5.24341136422658e-130!GO:0032991;macromolecular complex;5.10672259577636e-113!GO:0030529;ribonucleoprotein complex;7.64626995675979e-102!GO:0044237;cellular metabolic process;9.8282099567667e-101!GO:0005634;nucleus;2.45762584482482e-100!GO:0044238;primary metabolic process;6.43003136029542e-99!GO:0043170;macromolecule metabolic process;9.04648706091093e-95!GO:0044428;nuclear part;1.56897530988488e-94!GO:0043233;organelle lumen;1.03542430479347e-87!GO:0031974;membrane-enclosed lumen;1.03542430479347e-87!GO:0003723;RNA binding;5.44323578145192e-85!GO:0005739;mitochondrion;2.35814606811854e-72!GO:0006396;RNA processing;5.33227269454116e-68!GO:0005515;protein binding;1.93643710859504e-64!GO:0010467;gene expression;7.89168095984034e-62!GO:0043283;biopolymer metabolic process;5.4420942136986e-61!GO:0031981;nuclear lumen;3.50361991939448e-57!GO:0005840;ribosome;4.60404934797565e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.18201681768271e-56!GO:0006412;translation;1.90303122932211e-55!GO:0031090;organelle membrane;4.87805383569443e-55!GO:0043234;protein complex;9.18107613395787e-55!GO:0015031;protein transport;2.7091848767038e-53!GO:0033036;macromolecule localization;7.48908613866755e-52!GO:0003735;structural constituent of ribosome;4.53959777773323e-49!GO:0019538;protein metabolic process;4.68553684816918e-49!GO:0016071;mRNA metabolic process;1.36712745604556e-47!GO:0045184;establishment of protein localization;1.73951577381976e-47!GO:0008104;protein localization;2.82212743362173e-47!GO:0044429;mitochondrial part;9.27555560799428e-46!GO:0016043;cellular component organization and biogenesis;5.71718010023102e-45!GO:0008380;RNA splicing;6.03818346762453e-44!GO:0044267;cellular protein metabolic process;8.54035988927625e-44!GO:0044260;cellular macromolecule metabolic process;7.8988600709247e-43!GO:0031967;organelle envelope;9.65687244161209e-43!GO:0044249;cellular biosynthetic process;2.25056661119779e-42!GO:0031975;envelope;2.40351715347222e-42!GO:0006397;mRNA processing;1.75416713659068e-41!GO:0033279;ribosomal subunit;4.17696116733747e-41!GO:0009058;biosynthetic process;7.13426550770156e-41!GO:0009059;macromolecule biosynthetic process;2.30281139589144e-40!GO:0005829;cytosol;1.58584663086435e-39!GO:0046907;intracellular transport;1.9285159778825e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.3583278152801e-38!GO:0003676;nucleic acid binding;1.16542884513604e-36!GO:0006886;intracellular protein transport;1.3684809119689e-36!GO:0043228;non-membrane-bound organelle;2.8796179183642e-34!GO:0043232;intracellular non-membrane-bound organelle;2.8796179183642e-34!GO:0005654;nucleoplasm;1.75882588450668e-33!GO:0006996;organelle organization and biogenesis;1.44970343950049e-32!GO:0005681;spliceosome;5.27974902241507e-32!GO:0016070;RNA metabolic process;1.60697039389888e-31!GO:0006259;DNA metabolic process;1.71269196252946e-31!GO:0065003;macromolecular complex assembly;1.81093207057882e-31!GO:0044451;nucleoplasm part;2.03961518154036e-28!GO:0005740;mitochondrial envelope;2.12534217069703e-28!GO:0022607;cellular component assembly;2.60849166526498e-27!GO:0019866;organelle inner membrane;5.45908167247977e-27!GO:0000166;nucleotide binding;8.70940749434669e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.41406268416174e-26!GO:0005730;nucleolus;1.97799054988385e-26!GO:0031966;mitochondrial membrane;2.10727011164253e-26!GO:0005743;mitochondrial inner membrane;3.2841282722099e-25!GO:0051649;establishment of cellular localization;3.53679037973796e-25!GO:0051641;cellular localization;2.45322307417171e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.10208302651581e-23!GO:0016462;pyrophosphatase activity;1.20445281778525e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.62120287580206e-23!GO:0017111;nucleoside-triphosphatase activity;2.00855556223614e-23!GO:0012505;endomembrane system;3.40542140042321e-23!GO:0016874;ligase activity;4.52882882371713e-23!GO:0006119;oxidative phosphorylation;5.52293860605142e-23!GO:0044445;cytosolic part;1.21821561451262e-22!GO:0006512;ubiquitin cycle;3.87813918947853e-22!GO:0031980;mitochondrial lumen;2.08833185839969e-21!GO:0005759;mitochondrial matrix;2.08833185839969e-21!GO:0015934;large ribosomal subunit;4.22623850872734e-21!GO:0015935;small ribosomal subunit;4.23755462834594e-21!GO:0042254;ribosome biogenesis and assembly;3.41439035019699e-20!GO:0006974;response to DNA damage stimulus;2.32685388290183e-19!GO:0008135;translation factor activity, nucleic acid binding;3.34064750396112e-19!GO:0044455;mitochondrial membrane part;4.21485446931057e-19!GO:0005761;mitochondrial ribosome;8.15015690093571e-19!GO:0000313;organellar ribosome;8.15015690093571e-19!GO:0022618;protein-RNA complex assembly;9.57899409034446e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;1.86552100214917e-18!GO:0008134;transcription factor binding;2.39488377361003e-18!GO:0019941;modification-dependent protein catabolic process;2.470289498176e-18!GO:0043632;modification-dependent macromolecule catabolic process;2.470289498176e-18!GO:0006511;ubiquitin-dependent protein catabolic process;2.89100281964367e-18!GO:0007049;cell cycle;2.97840100405137e-18!GO:0006457;protein folding;3.08443729547254e-18!GO:0044265;cellular macromolecule catabolic process;3.76517625901898e-18!GO:0044257;cellular protein catabolic process;4.70497223357715e-18!GO:0017076;purine nucleotide binding;5.60641986340887e-18!GO:0032553;ribonucleotide binding;1.07609872934635e-17!GO:0032555;purine ribonucleotide binding;1.07609872934635e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.11411192588426e-17!GO:0006605;protein targeting;1.22734681442125e-17!GO:0043285;biopolymer catabolic process;4.58202995530618e-17!GO:0006281;DNA repair;4.20657147369345e-16!GO:0051186;cofactor metabolic process;4.36746693236705e-16!GO:0005783;endoplasmic reticulum;6.52272838796412e-16!GO:0016887;ATPase activity;2.50382798011704e-15!GO:0044432;endoplasmic reticulum part;2.62692204431252e-15!GO:0006399;tRNA metabolic process;3.28072878130456e-15!GO:0005524;ATP binding;4.20402080869669e-15!GO:0005635;nuclear envelope;5.05665911173333e-15!GO:0005746;mitochondrial respiratory chain;5.05665911173333e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.52974030423662e-15!GO:0030554;adenyl nucleotide binding;6.94622884184341e-15!GO:0005794;Golgi apparatus;8.01535481067982e-15!GO:0032559;adenyl ribonucleotide binding;9.79900367779003e-15!GO:0043412;biopolymer modification;1.04437415389109e-14!GO:0031965;nuclear membrane;1.19774777217556e-14!GO:0048193;Golgi vesicle transport;1.24342687773356e-14!GO:0009057;macromolecule catabolic process;1.31478299723605e-14!GO:0044248;cellular catabolic process;1.61157549573502e-14!GO:0042623;ATPase activity, coupled;1.83185213498925e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.99506391590174e-14!GO:0000375;RNA splicing, via transesterification reactions;1.99506391590174e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.99506391590174e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.78234376405823e-14!GO:0003954;NADH dehydrogenase activity;2.78234376405823e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.78234376405823e-14!GO:0003743;translation initiation factor activity;3.6475369635919e-14!GO:0030163;protein catabolic process;3.6475369635919e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.75817126565685e-14!GO:0048770;pigment granule;6.58805640030006e-14!GO:0042470;melanosome;6.58805640030006e-14!GO:0016192;vesicle-mediated transport;7.05399149016097e-14!GO:0016604;nuclear body;7.8466183283375e-14!GO:0006260;DNA replication;8.35083714173236e-14!GO:0004386;helicase activity;1.274342930598e-13!GO:0051082;unfolded protein binding;1.97181767062042e-13!GO:0006732;coenzyme metabolic process;2.27997061069176e-13!GO:0044453;nuclear membrane part;2.43855415916874e-13!GO:0009719;response to endogenous stimulus;2.46419091673252e-13!GO:0006364;rRNA processing;3.39434813766724e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.46736902995523e-13!GO:0042773;ATP synthesis coupled electron transport;4.46736902995523e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.3040841874254e-13!GO:0016072;rRNA metabolic process;5.41393106403842e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02265172844221e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.19211321168989e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.80522640355994e-12!GO:0045271;respiratory chain complex I;2.80522640355994e-12!GO:0005747;mitochondrial respiratory chain complex I;2.80522640355994e-12!GO:0006464;protein modification process;2.99423018227162e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.33567147906352e-12!GO:0005789;endoplasmic reticulum membrane;3.43329825495821e-12!GO:0008026;ATP-dependent helicase activity;4.8703234981728e-12!GO:0008639;small protein conjugating enzyme activity;5.09279714075112e-12!GO:0022402;cell cycle process;5.18077044609312e-12!GO:0005694;chromosome;5.76552606835482e-12!GO:0005643;nuclear pore;8.1125798429647e-12!GO:0006913;nucleocytoplasmic transport;8.1125798429647e-12!GO:0019787;small conjugating protein ligase activity;9.37654770873543e-12!GO:0006403;RNA localization;1.16030355158474e-11!GO:0004842;ubiquitin-protein ligase activity;1.37433177741915e-11!GO:0006413;translational initiation;1.71721806361712e-11!GO:0050657;nucleic acid transport;2.00406457155059e-11!GO:0051236;establishment of RNA localization;2.00406457155059e-11!GO:0050658;RNA transport;2.00406457155059e-11!GO:0051169;nuclear transport;2.13729984628004e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.89600247005049e-11!GO:0006366;transcription from RNA polymerase II promoter;3.09324935831043e-11!GO:0016607;nuclear speck;3.17533523615116e-11!GO:0065002;intracellular protein transport across a membrane;3.84861787221041e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.83623545927255e-11!GO:0051276;chromosome organization and biogenesis;4.83623545927255e-11!GO:0016881;acid-amino acid ligase activity;5.67658522410111e-11!GO:0003712;transcription cofactor activity;6.95745993822044e-11!GO:0008565;protein transporter activity;7.51801715788871e-11!GO:0043687;post-translational protein modification;8.0542618008452e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.36781934752388e-10!GO:0005768;endosome;1.50562451050315e-10!GO:0051188;cofactor biosynthetic process;3.82108093557656e-10!GO:0006446;regulation of translational initiation;3.96502503833062e-10!GO:0006323;DNA packaging;4.63813473335609e-10!GO:0044427;chromosomal part;6.09502365056193e-10!GO:0006461;protein complex assembly;7.25050565262933e-10!GO:0006163;purine nucleotide metabolic process;7.42875322527181e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.39995677773515e-10!GO:0009259;ribonucleotide metabolic process;8.73609686731445e-10!GO:0012501;programmed cell death;1.50101489578343e-09!GO:0017038;protein import;1.59782646473811e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.68268602647382e-09!GO:0000278;mitotic cell cycle;1.73977222502272e-09!GO:0006164;purine nucleotide biosynthetic process;1.74342420998831e-09!GO:0046930;pore complex;1.79618853806065e-09!GO:0006915;apoptosis;2.12619858741644e-09!GO:0051028;mRNA transport;2.16575528666479e-09!GO:0019829;cation-transporting ATPase activity;2.16575528666479e-09!GO:0016568;chromatin modification;2.64513097348401e-09!GO:0015986;ATP synthesis coupled proton transport;2.82500649760282e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.82500649760282e-09!GO:0016779;nucleotidyltransferase activity;3.45992511890606e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.47274625878937e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.30794972898406e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.30794972898406e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.30794972898406e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.31490852922869e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.31490852922869e-09!GO:0009260;ribonucleotide biosynthetic process;5.14802825483121e-09!GO:0043566;structure-specific DNA binding;5.70192942029964e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.40144242571549e-09!GO:0009199;ribonucleoside triphosphate metabolic process;6.69544171080625e-09!GO:0009108;coenzyme biosynthetic process;6.70554036115238e-09!GO:0007005;mitochondrion organization and biogenesis;7.00049002383675e-09!GO:0050794;regulation of cellular process;7.0356480177473e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.71772656365172e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.71772656365172e-09!GO:0009150;purine ribonucleotide metabolic process;8.11345552407936e-09!GO:0009055;electron carrier activity;8.5026122929064e-09!GO:0044440;endosomal part;1.11166021536647e-08!GO:0010008;endosome membrane;1.11166021536647e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.16585230608915e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.16585230608915e-08!GO:0009141;nucleoside triphosphate metabolic process;1.38431789608074e-08!GO:0043038;amino acid activation;1.54055250052558e-08!GO:0006418;tRNA aminoacylation for protein translation;1.54055250052558e-08!GO:0043039;tRNA aminoacylation;1.54055250052558e-08!GO:0008219;cell death;1.73206374685876e-08!GO:0016265;death;1.73206374685876e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.95226555715464e-08!GO:0032446;protein modification by small protein conjugation;2.11625179342412e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.26161398974149e-08!GO:0016567;protein ubiquitination;2.32144195623962e-08!GO:0005667;transcription factor complex;3.00017425996457e-08!GO:0019222;regulation of metabolic process;3.35227314668055e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.67951590123855e-08!GO:0006754;ATP biosynthetic process;3.75257391927648e-08!GO:0006753;nucleoside phosphate metabolic process;3.75257391927648e-08!GO:0003899;DNA-directed RNA polymerase activity;3.94258265752826e-08!GO:0009056;catabolic process;4.30897625550272e-08!GO:0008033;tRNA processing;5.90807710680338e-08!GO:0003697;single-stranded DNA binding;6.79484541380232e-08!GO:0046034;ATP metabolic process;8.17705827238518e-08!GO:0006888;ER to Golgi vesicle-mediated transport;8.39434382542424e-08!GO:0048475;coated membrane;8.43515044906982e-08!GO:0030117;membrane coat;8.43515044906982e-08!GO:0000151;ubiquitin ligase complex;1.21097644448388e-07!GO:0051726;regulation of cell cycle;1.54419213419062e-07!GO:0006261;DNA-dependent DNA replication;1.6877568037658e-07!GO:0000074;regulation of progression through cell cycle;1.74091943363183e-07!GO:0005793;ER-Golgi intermediate compartment;1.76551423011798e-07!GO:0003724;RNA helicase activity;1.96317748243372e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.36159131443095e-07!GO:0030120;vesicle coat;2.94857815887654e-07!GO:0030662;coated vesicle membrane;2.94857815887654e-07!GO:0009060;aerobic respiration;3.13595696132082e-07!GO:0051246;regulation of protein metabolic process;3.19435312282746e-07!GO:0005770;late endosome;3.30264305277146e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.86243981058519e-07!GO:0016787;hydrolase activity;4.99108499113915e-07!GO:0044431;Golgi apparatus part;5.38604152425874e-07!GO:0022403;cell cycle phase;5.50312562388974e-07!GO:0000314;organellar small ribosomal subunit;5.58720456170161e-07!GO:0005763;mitochondrial small ribosomal subunit;5.58720456170161e-07!GO:0006752;group transfer coenzyme metabolic process;5.75231602422803e-07!GO:0065004;protein-DNA complex assembly;6.15228036647285e-07!GO:0000245;spliceosome assembly;6.99775217091896e-07!GO:0044452;nucleolar part;8.25581033323989e-07!GO:0045333;cellular respiration;8.65890082186224e-07!GO:0016740;transferase activity;1.06179617271118e-06!GO:0000087;M phase of mitotic cell cycle;1.20103573439557e-06!GO:0009117;nucleotide metabolic process;1.49493625463979e-06!GO:0005762;mitochondrial large ribosomal subunit;1.50247375354812e-06!GO:0000315;organellar large ribosomal subunit;1.50247375354812e-06!GO:0004298;threonine endopeptidase activity;1.67119929457843e-06!GO:0008654;phospholipid biosynthetic process;1.8773811087494e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.08988560930421e-06!GO:0043623;cellular protein complex assembly;2.11145207847848e-06!GO:0007067;mitosis;2.37666296718573e-06!GO:0051301;cell division;3.59679597989977e-06!GO:0045259;proton-transporting ATP synthase complex;3.64829637232364e-06!GO:0000785;chromatin;4.18559773735899e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.94884826234524e-06!GO:0051170;nuclear import;5.05091532352841e-06!GO:0003713;transcription coactivator activity;5.05091532352841e-06!GO:0006613;cotranslational protein targeting to membrane;5.2135753985675e-06!GO:0008186;RNA-dependent ATPase activity;5.38448966938181e-06!GO:0016564;transcription repressor activity;5.49294440961016e-06!GO:0006350;transcription;5.63445083026887e-06!GO:0051168;nuclear export;6.15132446755424e-06!GO:0031323;regulation of cellular metabolic process;6.40737048870056e-06!GO:0016563;transcription activator activity;8.89123466585022e-06!GO:0005798;Golgi-associated vesicle;9.38367428001366e-06!GO:0006333;chromatin assembly or disassembly;1.01750132892717e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.15781130249299e-05!GO:0003924;GTPase activity;1.29137688204932e-05!GO:0006606;protein import into nucleus;1.37640044952972e-05!GO:0005657;replication fork;1.37640044952972e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.39959521792155e-05!GO:0051427;hormone receptor binding;1.45274400866623e-05!GO:0031324;negative regulation of cellular metabolic process;1.62047551153488e-05!GO:0004004;ATP-dependent RNA helicase activity;1.81087388141145e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.84198801331289e-05!GO:0042981;regulation of apoptosis;2.00992275653057e-05!GO:0043067;regulation of programmed cell death;2.22128594704871e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.43267542390061e-05!GO:0000279;M phase;2.58535847861806e-05!GO:0031988;membrane-bound vesicle;2.86101988342481e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.9059143703175e-05!GO:0005525;GTP binding;2.93115515068195e-05!GO:0006084;acetyl-CoA metabolic process;2.97606328736756e-05!GO:0006099;tricarboxylic acid cycle;3.10226559866481e-05!GO:0046356;acetyl-CoA catabolic process;3.10226559866481e-05!GO:0035257;nuclear hormone receptor binding;3.10226559866481e-05!GO:0006352;transcription initiation;3.70432918303495e-05!GO:0006626;protein targeting to mitochondrion;4.09578541831886e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.32028977604597e-05!GO:0016491;oxidoreductase activity;4.70296631954342e-05!GO:0006402;mRNA catabolic process;4.72057181323441e-05!GO:0050789;regulation of biological process;4.72920663881386e-05!GO:0048523;negative regulation of cellular process;4.81064945278937e-05!GO:0000139;Golgi membrane;4.98054158816316e-05!GO:0006612;protein targeting to membrane;5.05968033618113e-05!GO:0005769;early endosome;5.1453049007099e-05!GO:0043021;ribonucleoprotein binding;5.5169943142143e-05!GO:0006414;translational elongation;6.08470389250095e-05!GO:0003690;double-stranded DNA binding;6.38421710884498e-05!GO:0051187;cofactor catabolic process;6.52621898645165e-05!GO:0003714;transcription corepressor activity;6.60781310371987e-05!GO:0043681;protein import into mitochondrion;6.61205473078949e-05!GO:0009892;negative regulation of metabolic process;7.24043640166916e-05!GO:0015630;microtubule cytoskeleton;8.13593137018493e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.29863347883518e-05!GO:0046489;phosphoinositide biosynthetic process;8.46860865842681e-05!GO:0048471;perinuclear region of cytoplasm;8.98453017750952e-05!GO:0043069;negative regulation of programmed cell death;9.26464054491243e-05!GO:0006383;transcription from RNA polymerase III promoter;0.00010001080992776!GO:0019899;enzyme binding;0.000102278498130958!GO:0046474;glycerophospholipid biosynthetic process;0.000109689132804928!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000112998636816858!GO:0010468;regulation of gene expression;0.000113056098644174!GO:0003729;mRNA binding;0.000139864752320038!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000141449068819089!GO:0005813;centrosome;0.000154413978685034!GO:0043066;negative regulation of apoptosis;0.000177210667635387!GO:0046483;heterocycle metabolic process;0.000183796518919857!GO:0016251;general RNA polymerase II transcription factor activity;0.000191307595904564!GO:0006091;generation of precursor metabolites and energy;0.000197817129555474!GO:0016197;endosome transport;0.000197831680052452!GO:0032561;guanyl ribonucleotide binding;0.00020426929851678!GO:0019001;guanyl nucleotide binding;0.00020426929851678!GO:0000049;tRNA binding;0.000211631853225073!GO:0005773;vacuole;0.000213769220616516!GO:0006891;intra-Golgi vesicle-mediated transport;0.000215973087068091!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000229597261155042!GO:0006793;phosphorus metabolic process;0.000230462164194026!GO:0006796;phosphate metabolic process;0.000230462164194026!GO:0031982;vesicle;0.000233828180493494!GO:0009109;coenzyme catabolic process;0.000236261733982689!GO:0030880;RNA polymerase complex;0.000244974703946934!GO:0005788;endoplasmic reticulum lumen;0.000262092579989725!GO:0006401;RNA catabolic process;0.000262381508213533!GO:0005815;microtubule organizing center;0.000296388760036638!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000297591190732268!GO:0030867;rough endoplasmic reticulum membrane;0.000308583231287951!GO:0031902;late endosome membrane;0.000313743520354038!GO:0050662;coenzyme binding;0.000328214983410545!GO:0045454;cell redox homeostasis;0.000329315881642262!GO:0032774;RNA biosynthetic process;0.000348116420460045!GO:0016363;nuclear matrix;0.000358504200815358!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000372617239574184!GO:0006302;double-strand break repair;0.000388907290177798!GO:0031410;cytoplasmic vesicle;0.000398999506486649!GO:0006351;transcription, DNA-dependent;0.000417624449393228!GO:0006916;anti-apoptosis;0.000445256366828426!GO:0007264;small GTPase mediated signal transduction;0.000449956348882955!GO:0042802;identical protein binding;0.00045971101297614!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000461178976911676!GO:0015399;primary active transmembrane transporter activity;0.000461178976911676!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000488695523471058!GO:0000428;DNA-directed RNA polymerase complex;0.000488695523471058!GO:0016481;negative regulation of transcription;0.000498674536007607!GO:0005048;signal sequence binding;0.000504589468079729!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00051397910304248!GO:0016853;isomerase activity;0.000539469976167254!GO:0016741;transferase activity, transferring one-carbon groups;0.000576883671962481!GO:0009165;nucleotide biosynthetic process;0.000624750808037136!GO:0045045;secretory pathway;0.000640575794442433!GO:0008250;oligosaccharyl transferase complex;0.000651162215354545!GO:0046467;membrane lipid biosynthetic process;0.000665241649958802!GO:0006506;GPI anchor biosynthetic process;0.000710703904036366!GO:0008168;methyltransferase activity;0.000711256098325004!GO:0033116;ER-Golgi intermediate compartment membrane;0.00074840932313493!GO:0048519;negative regulation of biological process;0.000799699355458289!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000841698512258589!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000841812878783157!GO:0006839;mitochondrial transport;0.000841812878783157!GO:0030663;COPI coated vesicle membrane;0.000844518179491854!GO:0030126;COPI vesicle coat;0.000844518179491854!GO:0000059;protein import into nucleus, docking;0.000855687436689671!GO:0016310;phosphorylation;0.000869514602329612!GO:0006497;protein amino acid lipidation;0.0008850536541121!GO:0015992;proton transport;0.000887907718923771!GO:0032508;DNA duplex unwinding;0.000901761028252428!GO:0032392;DNA geometric change;0.000901761028252428!GO:0031072;heat shock protein binding;0.000971679303740153!GO:0004576;oligosaccharyl transferase activity;0.000983531312910564!GO:0019867;outer membrane;0.000983531312910564!GO:0051252;regulation of RNA metabolic process;0.00100666080180528!GO:0006818;hydrogen transport;0.001013672895769!GO:0051920;peroxiredoxin activity;0.00104082366088555!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00104082366088555!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00104082366088555!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00104082366088555!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00106668928327493!GO:0009116;nucleoside metabolic process;0.00107760164797723!GO:0003746;translation elongation factor activity;0.00108007937707371!GO:0006611;protein export from nucleus;0.00110254020263667!GO:0031968;organelle outer membrane;0.00113114580842072!GO:0006405;RNA export from nucleus;0.00114562994735226!GO:0045786;negative regulation of progression through cell cycle;0.00120187965186396!GO:0005684;U2-dependent spliceosome;0.00120399272715822!GO:0048500;signal recognition particle;0.00121145147642067!GO:0006505;GPI anchor metabolic process;0.00121201727988315!GO:0003711;transcription elongation regulator activity;0.00121670306275151!GO:0000323;lytic vacuole;0.00122500084080851!GO:0005764;lysosome;0.00122500084080851!GO:0051052;regulation of DNA metabolic process;0.00123256483047138!GO:0030118;clathrin coat;0.00129344549357261!GO:0007243;protein kinase cascade;0.00131134120990684!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00139294288455131!GO:0009112;nucleobase metabolic process;0.00139432211259772!GO:0008180;signalosome;0.00142570195828001!GO:0016859;cis-trans isomerase activity;0.00144226565493154!GO:0008094;DNA-dependent ATPase activity;0.00148292666685518!GO:0007006;mitochondrial membrane organization and biogenesis;0.0014934432478799!GO:0003678;DNA helicase activity;0.00164986074864744!GO:0008312;7S RNA binding;0.00172662865632269!GO:0065009;regulation of a molecular function;0.00178325280066156!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00186108235698784!GO:0003684;damaged DNA binding;0.00186108235698784!GO:0009451;RNA modification;0.0018630714011652!GO:0030137;COPI-coated vesicle;0.00198452872760878!GO:0015980;energy derivation by oxidation of organic compounds;0.00207576342065908!GO:0030133;transport vesicle;0.00212587332687077!GO:0051329;interphase of mitotic cell cycle;0.00213309869052928!GO:0006650;glycerophospholipid metabolic process;0.00215251141318843!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00234753910783018!GO:0045047;protein targeting to ER;0.00234753910783018!GO:0042158;lipoprotein biosynthetic process;0.00244001551828758!GO:0051540;metal cluster binding;0.00260906992131486!GO:0051536;iron-sulfur cluster binding;0.00260906992131486!GO:0006268;DNA unwinding during replication;0.00264154389379436!GO:0051325;interphase;0.0027492345033487!GO:0005669;transcription factor TFIID complex;0.00278806310048889!GO:0005741;mitochondrial outer membrane;0.00281761326906656!GO:0045449;regulation of transcription;0.0028425256538662!GO:0051539;4 iron, 4 sulfur cluster binding;0.00292573092509653!GO:0031252;leading edge;0.00294062543917939!GO:0005885;Arp2/3 protein complex;0.00300237313726278!GO:0031497;chromatin assembly;0.00301988270262187!GO:0043596;nuclear replication fork;0.00308406042168874!GO:0004527;exonuclease activity;0.00323376640966254!GO:0030119;AP-type membrane coat adaptor complex;0.003345163825444!GO:0019843;rRNA binding;0.00340292244155518!GO:0030384;phosphoinositide metabolic process;0.00342805502117932!GO:0051789;response to protein stimulus;0.00346063309240277!GO:0006986;response to unfolded protein;0.00346063309240277!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00353429354769346!GO:0003702;RNA polymerase II transcription factor activity;0.00363784921099466!GO:0015631;tubulin binding;0.00379041334919977!GO:0006334;nucleosome assembly;0.00382145804345079!GO:0043492;ATPase activity, coupled to movement of substances;0.00383335072106981!GO:0006400;tRNA modification;0.00394460575915693!GO:0018196;peptidyl-asparagine modification;0.00410452819012357!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00410452819012357!GO:0030131;clathrin adaptor complex;0.00414695112706462!GO:0016272;prefoldin complex;0.00418089440726695!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00432555070749821!GO:0048487;beta-tubulin binding;0.00440521968230292!GO:0000096;sulfur amino acid metabolic process;0.00444328253726816!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00444658565938699!GO:0015002;heme-copper terminal oxidase activity;0.00444658565938699!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00444658565938699!GO:0004129;cytochrome-c oxidase activity;0.00444658565938699!GO:0022890;inorganic cation transmembrane transporter activity;0.00446534017316576!GO:0030176;integral to endoplasmic reticulum membrane;0.00455888092244298!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0046811839793575!GO:0048037;cofactor binding;0.0047061521428402!GO:0032984;macromolecular complex disassembly;0.00478700092003735!GO:0030036;actin cytoskeleton organization and biogenesis;0.0047891120956491!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0048317770362618!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0048317770362618!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00485547448102209!GO:0004518;nuclease activity;0.00489076495346094!GO:0005758;mitochondrial intermembrane space;0.00490899025812463!GO:0008234;cysteine-type peptidase activity;0.00516002787713436!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00520734581157364!GO:0035258;steroid hormone receptor binding;0.00526322537368751!GO:0043624;cellular protein complex disassembly;0.00536914411617697!GO:0019752;carboxylic acid metabolic process;0.00536914411617697!GO:0043022;ribosome binding;0.00544006107974299!GO:0031124;mRNA 3'-end processing;0.00563136340171181!GO:0006338;chromatin remodeling;0.00564818253229388!GO:0030658;transport vesicle membrane;0.00577361538075997!GO:0048146;positive regulation of fibroblast proliferation;0.00610145057422524!GO:0006082;organic acid metabolic process;0.00610145057422524!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00613732005605626!GO:0046966;thyroid hormone receptor binding;0.00614091277616322!GO:0022406;membrane docking;0.00625822038852084!GO:0048278;vesicle docking;0.00625822038852084!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00639231943224122!GO:0005774;vacuolar membrane;0.00650779968750968!GO:0048144;fibroblast proliferation;0.00650792089741821!GO:0048145;regulation of fibroblast proliferation;0.00650792089741821!GO:0003682;chromatin binding;0.00660298617811439!GO:0044438;microbody part;0.00704881246587179!GO:0044439;peroxisomal part;0.00704881246587179!GO:0006904;vesicle docking during exocytosis;0.00717064869491255!GO:0005791;rough endoplasmic reticulum;0.00723058086905143!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00758276512158192!GO:0043189;H4/H2A histone acetyltransferase complex;0.00780482940982655!GO:0008139;nuclear localization sequence binding;0.00784763975044906!GO:0043488;regulation of mRNA stability;0.00802156033281384!GO:0043487;regulation of RNA stability;0.00802156033281384!GO:0005732;small nucleolar ribonucleoprotein complex;0.00825090728750047!GO:0006275;regulation of DNA replication;0.00836297689460953!GO:0005869;dynactin complex;0.00837337818918332!GO:0051287;NAD binding;0.00843893790839748!GO:0043241;protein complex disassembly;0.00849572128602439!GO:0006354;RNA elongation;0.00857556974300626!GO:0046983;protein dimerization activity;0.00878675327606097!GO:0030521;androgen receptor signaling pathway;0.00890388178206602!GO:0046128;purine ribonucleoside metabolic process;0.00906483697917066!GO:0042278;purine nucleoside metabolic process;0.00906483697917066!GO:0031970;organelle envelope lumen;0.00909939819819455!GO:0000178;exosome (RNase complex);0.00917823687569393!GO:0006310;DNA recombination;0.00921583387338302!GO:0007010;cytoskeleton organization and biogenesis;0.00965459339504641!GO:0016044;membrane organization and biogenesis;0.00971941187183173!GO:0007004;telomere maintenance via telomerase;0.00973560000899725!GO:0005637;nuclear inner membrane;0.00974436439789007!GO:0000123;histone acetyltransferase complex;0.0100596693008422!GO:0035267;NuA4 histone acetyltransferase complex;0.0103734399987729!GO:0031529;ruffle organization and biogenesis;0.0105092199606507!GO:0006376;mRNA splice site selection;0.0110646346989242!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0110646346989242!GO:0030659;cytoplasmic vesicle membrane;0.0110865855881607!GO:0043284;biopolymer biosynthetic process;0.0111926977072552!GO:0031903;microbody membrane;0.0114077334708904!GO:0005778;peroxisomal membrane;0.0114077334708904!GO:0000075;cell cycle checkpoint;0.0114153974621864!GO:0045893;positive regulation of transcription, DNA-dependent;0.0114547205494085!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0114674620192459!GO:0006378;mRNA polyadenylation;0.0115186733748815!GO:0032200;telomere organization and biogenesis;0.0118178968175896!GO:0000723;telomere maintenance;0.0118178968175896!GO:0042770;DNA damage response, signal transduction;0.0118232069999376!GO:0008022;protein C-terminus binding;0.0118797694399629!GO:0051087;chaperone binding;0.011914869847879!GO:0006595;polyamine metabolic process;0.0119188870811994!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0120134811601224!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0121568479471291!GO:0044433;cytoplasmic vesicle part;0.0121837090492846!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0121945343792638!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0124013119022674!GO:0046112;nucleobase biosynthetic process;0.0124683059097559!GO:0042393;histone binding;0.0126019357032709!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0126094470359998!GO:0006289;nucleotide-excision repair;0.013239946676514!GO:0000209;protein polyubiquitination;0.0132716302429231!GO:0030132;clathrin coat of coated pit;0.0133554087135832!GO:0006360;transcription from RNA polymerase I promoter;0.0135044977976351!GO:0006284;base-excision repair;0.0135290345365238!GO:0033673;negative regulation of kinase activity;0.0135299330692313!GO:0006469;negative regulation of protein kinase activity;0.0135299330692313!GO:0012506;vesicle membrane;0.0135385505019099!GO:0006144;purine base metabolic process;0.0135385505019099!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0135725123705718!GO:0005832;chaperonin-containing T-complex;0.0135725123705718!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0137485696345731!GO:0010257;NADH dehydrogenase complex assembly;0.0137485696345731!GO:0033108;mitochondrial respiratory chain complex assembly;0.0137485696345731!GO:0030660;Golgi-associated vesicle membrane;0.0138985327766178!GO:0040029;regulation of gene expression, epigenetic;0.0139557668851085!GO:0004674;protein serine/threonine kinase activity;0.013987725852699!GO:0005819;spindle;0.0141885442190239!GO:0044437;vacuolar part;0.0144582294078532!GO:0030134;ER to Golgi transport vesicle;0.014649078828181!GO:0000118;histone deacetylase complex;0.0148157175339891!GO:0006520;amino acid metabolic process;0.0149618610213793!GO:0006355;regulation of transcription, DNA-dependent;0.0149732600927558!GO:0030125;clathrin vesicle coat;0.0150617623608108!GO:0030665;clathrin coated vesicle membrane;0.0150617623608108!GO:0022411;cellular component disassembly;0.0153403400160559!GO:0000228;nuclear chromosome;0.0155705643846973!GO:0006892;post-Golgi vesicle-mediated transport;0.0156810506901464!GO:0004532;exoribonuclease activity;0.0159089533118448!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0159089533118448!GO:0007030;Golgi organization and biogenesis;0.0163214530331656!GO:0031901;early endosome membrane;0.0164403546584529!GO:0000152;nuclear ubiquitin ligase complex;0.0166179965257246!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0166945323998534!GO:0043601;nuclear replisome;0.0172368651872044!GO:0030894;replisome;0.0172368651872044!GO:0019783;small conjugating protein-specific protease activity;0.0172775275625569!GO:0008632;apoptotic program;0.017394691153782!GO:0005905;coated pit;0.0174886774112081!GO:0000775;chromosome, pericentric region;0.0178039185814293!GO:0051348;negative regulation of transferase activity;0.0178310147838652!GO:0004722;protein serine/threonine phosphatase activity;0.0180626258253913!GO:0048522;positive regulation of cellular process;0.0189777938831245!GO:0009119;ribonucleoside metabolic process;0.0189889949200275!GO:0006417;regulation of translation;0.0192053583938608!GO:0006270;DNA replication initiation;0.0193104369044444!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0193511561711499!GO:0008408;3'-5' exonuclease activity;0.0193511561711499!GO:0003725;double-stranded RNA binding;0.0193995328255096!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.019943325892971!GO:0045039;protein import into mitochondrial inner membrane;0.019943325892971!GO:0031625;ubiquitin protein ligase binding;0.0202345632322592!GO:0031123;RNA 3'-end processing;0.0203721303541578!GO:0007034;vacuolar transport;0.0208701793933489!GO:0007033;vacuole organization and biogenesis;0.0209607570469231!GO:0006740;NADPH regeneration;0.021021970172043!GO:0006098;pentose-phosphate shunt;0.021021970172043!GO:0051101;regulation of DNA binding;0.021021970172043!GO:0008538;proteasome activator activity;0.0213295622421395!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0218151680258271!GO:0065007;biological regulation;0.021872296965222!GO:0045941;positive regulation of transcription;0.0221498414966722!GO:0009303;rRNA transcription;0.0221498414966722!GO:0030503;regulation of cell redox homeostasis;0.0225364744629764!GO:0030029;actin filament-based process;0.0225577270430854!GO:0004843;ubiquitin-specific protease activity;0.022560849387505!GO:0046914;transition metal ion binding;0.0227222364999229!GO:0008629;induction of apoptosis by intracellular signals;0.0227962065338631!GO:0000339;RNA cap binding;0.0229132271853868!GO:0045892;negative regulation of transcription, DNA-dependent;0.0230498458264707!GO:0008270;zinc ion binding;0.0234344194833935!GO:0042147;retrograde transport, endosome to Golgi;0.0240104865315847!GO:0006672;ceramide metabolic process;0.0242240264613418!GO:0046822;regulation of nucleocytoplasmic transport;0.0242240264613418!GO:0000792;heterochromatin;0.0248134387578981!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0248134387578981!GO:0008017;microtubule binding;0.0248134387578981!GO:0001726;ruffle;0.0248806398930861!GO:0031371;ubiquitin conjugating enzyme complex;0.0251750353110587!GO:0000781;chromosome, telomeric region;0.0251750353110587!GO:0008361;regulation of cell size;0.0251861104155195!GO:0008092;cytoskeletal protein binding;0.0251861104155195!GO:0030515;snoRNA binding;0.0252941240893412!GO:0006367;transcription initiation from RNA polymerase II promoter;0.025575620606857!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.025581829515744!GO:0044454;nuclear chromosome part;0.0257687143315485!GO:0050790;regulation of catalytic activity;0.0264045938667143!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0266372540580381!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0268843602607464!GO:0006778;porphyrin metabolic process;0.0272351861815147!GO:0033013;tetrapyrrole metabolic process;0.0272351861815147!GO:0005765;lysosomal membrane;0.0273565865415309!GO:0008097;5S rRNA binding;0.0279567924645437!GO:0004526;ribonuclease P activity;0.0282223686201384!GO:0006984;ER-nuclear signaling pathway;0.0282916645970375!GO:0030518;steroid hormone receptor signaling pathway;0.0291247955905333!GO:0030127;COPII vesicle coat;0.0297703092309262!GO:0012507;ER to Golgi transport vesicle membrane;0.0297703092309262!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0298007542107695!GO:0004680;casein kinase activity;0.0307699729242799!GO:0043414;biopolymer methylation;0.0307699729242799!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0307699729242799!GO:0005784;translocon complex;0.0307952615509767!GO:0050811;GABA receptor binding;0.0308516358232709!GO:0051059;NF-kappaB binding;0.0309882783659642!GO:0006643;membrane lipid metabolic process;0.0310498566436242!GO:0008287;protein serine/threonine phosphatase complex;0.031307502239162!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.031498747171399!GO:0051338;regulation of transferase activity;0.0317763215526293!GO:0035035;histone acetyltransferase binding;0.0318285587122045!GO:0006390;transcription from mitochondrial promoter;0.032275199538723!GO:0007265;Ras protein signal transduction;0.033411831309527!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0338346537589028!GO:0000726;non-recombinational repair;0.0343724800101354!GO:0007040;lysosome organization and biogenesis;0.034623437881983!GO:0000030;mannosyltransferase activity;0.0352844408121415!GO:0046519;sphingoid metabolic process;0.0354101114200129!GO:0000776;kinetochore;0.0356535213193156!GO:0045767;regulation of anti-apoptosis;0.0357699434279149!GO:0048012;hepatocyte growth factor receptor signaling pathway;0.0364325581447404!GO:0005008;hepatocyte growth factor receptor activity;0.0364325581447404!GO:0051450;myoblast proliferation;0.0364325581447404!GO:0030508;thiol-disulfide exchange intermediate activity;0.0366464701737894!GO:0008637;apoptotic mitochondrial changes;0.0368282096862857!GO:0004221;ubiquitin thiolesterase activity;0.0371053064647087!GO:0016407;acetyltransferase activity;0.0372927324087717!GO:0051128;regulation of cellular component organization and biogenesis;0.0374676112402856!GO:0032940;secretion by cell;0.037817006169025!GO:0030911;TPR domain binding;0.0379248979321444!GO:0006118;electron transport;0.0384194436608986!GO:0009967;positive regulation of signal transduction;0.0385913890387668!GO:0008426;protein kinase C inhibitor activity;0.0389376909458057!GO:0001522;pseudouridine synthesis;0.0390755586232772!GO:0003677;DNA binding;0.0392359284331437!GO:0001558;regulation of cell growth;0.0393524668734155!GO:0016791;phosphoric monoester hydrolase activity;0.0393524668734155!GO:0032507;maintenance of cellular protein localization;0.0398198917294993!GO:0008610;lipid biosynthetic process;0.0398922584025512!GO:0004177;aminopeptidase activity;0.0405078093703966!GO:0022415;viral reproductive process;0.0408417980695226!GO:0032259;methylation;0.0412322441779928!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0418843022570545!GO:0051098;regulation of binding;0.0427309149297842!GO:0009299;mRNA transcription;0.0432831177135876!GO:0004549;tRNA-specific ribonuclease activity;0.0433046992019796!GO:0030140;trans-Golgi network transport vesicle;0.0436424796369834!GO:0005777;peroxisome;0.0437495611016558!GO:0042579;microbody;0.0437495611016558!GO:0005874;microtubule;0.0440551377633507!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0451472205882709!GO:0006220;pyrimidine nucleotide metabolic process;0.0452739980303055!GO:0016049;cell growth;0.045346995681045!GO:0051015;actin filament binding;0.0454266927617052!GO:0016584;nucleosome positioning;0.0457455944157454!GO:0006607;NLS-bearing substrate import into nucleus;0.0461822311358395!GO:0043549;regulation of kinase activity;0.0462045821791734!GO:0007051;spindle organization and biogenesis;0.0464130382046023!GO:0006278;RNA-dependent DNA replication;0.0470900249452603!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0472101956150822!GO:0006644;phospholipid metabolic process;0.0474124520120422!GO:0050681;androgen receptor binding;0.0481308677553931!GO:0017134;fibroblast growth factor binding;0.0481532719963737!GO:0006749;glutathione metabolic process;0.048347869348701!GO:0004423;iduronate-2-sulfatase activity;0.0496962967476411 | |||
|sample_id=10486 | |sample_id=10486 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=ELK1,4_GABP{A,B1}:2.40287911666;bHLH_family:1.93744048766;SNAI1..3:1.78488528102;ZEB1:1.65167713154;CRX:1.43491339352;ARID5B:1.41507089406;FOX{I1,J2}:1.39782672364;FOXQ1:1.39126680145;FOXN1:1.37817321783;MYOD1:1.29651393549;PPARG:1.23906263098;AHR_ARNT_ARNT2:1.14670345638;NRF1:1.12388735175;NKX6-1,2:1.12050913446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05470132832;FOXD3:0.959529809605;ZBTB16:0.949405931637;PITX1..3:0.894788508273;HIF1A:0.888999135481;CDC5L:0.844029830858;FOXA2:0.826833658386;TEF:0.791693223667;ONECUT1,2:0.776755860688;ADNP_IRX_SIX_ZHX:0.71934898024;SREBF1,2:0.718833343884;ELF1,2,4:0.692528625664;NFE2L2:0.682674363492;YY1:0.66815015367;RFX2..5_RFXANK_RFXAP:0.661821958496;FOXM1:0.631503188704;RFX1:0.615824070398;POU1F1:0.614665083288;T:0.602659996485;NFE2:0.584014552702;FOXP1:0.567542029433;HOXA9_MEIS1:0.553329672471;FOS_FOS{B,L1}_JUN{B,D}:0.488333210687;VSX1,2:0.479054153106;NFY{A,B,C}:0.472817691946;BACH2:0.472391615949;ZNF143:0.449861740209;DBP:0.378197699903;FOSL2:0.361484413544;TOPORS:0.359010856587;FOXP3:0.358345982732;CDX1,2,4:0.353493204388;LHX3,4:0.344606107903;RORA:0.339738518262;HAND1,2:0.336919816881;ATF5_CREB3:0.334828475407;E2F1..5:0.298800342858;TBX4,5:0.29655627572;PDX1:0.296240117962;TFDP1:0.288511488304;ATF4:0.28084087843;TEAD1:0.280628546189;LMO2:0.276831189595;TLX2:0.248554581984;CREB1:0.227154324793;IKZF2:0.224268834694;IKZF1:0.203880511446;OCT4_SOX2{dimer}:0.180049322715;HMGA1,2:0.173754653282;NFIL3:0.161333808256;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.146258190033;HSF1,2:0.138383234104;EN1,2:0.135750295448;NR6A1:0.126332629884;EVI1:0.121877255889;POU6F1:0.093745684416;PAX2:0.0813545094923;ATF2:0.0730932196986;SOX2:0.0632436712158;HOX{A4,D4}:0.055714445126;NFIX:0.0317444517799;HBP1_HMGB_SSRP1_UBTF:0.0292596978672;HNF1A:0.0209183655707;NANOG:0.0172106238928;XBP1:0.0124116991552;FOX{D1,D2}:0.00959223592182;FOX{F1,F2,J1}:0.00700453621171;ATF6:-0.00879130257769;FOXL1:-0.0179320619564;ALX1:-0.0258073940013;JUN:-0.0359135798467;ESR1:-0.0406781009088;ESRRA:-0.0461393782856;PAX8:-0.0481372417654;HLF:-0.0596357336754;RXRA_VDR{dimer}:-0.0635112644592;NKX3-1:-0.0741462850818;CEBPA,B_DDIT3:-0.0745560800492;NFKB1_REL_RELA:-0.0751294074682;IRF1,2:-0.0781156041732;NKX2-2,8:-0.0861457746638;MYB:-0.089599036365;CUX2:-0.0914419213715;LEF1_TCF7_TCF7L1,2:-0.0916942634375;NKX2-1,4:-0.100463624631;HOX{A6,A7,B6,B7}:-0.102413025477;PBX1:-0.118357608049;IRF7:-0.120114805459;TP53:-0.134740999596;BPTF:-0.141007405648;SOX{8,9,10}:-0.14154684747;MED-1{core}:-0.143230042779;RBPJ:-0.149301271848;FOXO1,3,4:-0.157317813588;GATA6:-0.158203149994;NR5A1,2:-0.162706593832;GLI1..3:-0.179824399915;SOX17:-0.189178861766;AIRE:-0.210793914178;DMAP1_NCOR{1,2}_SMARC:-0.210817127875;HNF4A_NR2F1,2:-0.215376999772;SOX5:-0.223296284119;NR1H4:-0.233612818361;NKX3-2:-0.267632029153;AR:-0.279948306687;TAL1_TCF{3,4,12}:-0.290538103805;ZBTB6:-0.297204435691;GFI1:-0.303312692931;ETS1,2:-0.332094554327;MYBL2:-0.334657920239;KLF4:-0.341138990585;REST:-0.342462059903;NKX2-3_NKX2-5:-0.360722589067;BREu{core}:-0.363147476122;ZFP161:-0.368939733846;STAT5{A,B}:-0.374930669083;PRRX1,2:-0.37915881117;SPI1:-0.395130758598;RUNX1..3:-0.409212496049;PAX6:-0.425948925495;SPIB:-0.444888682474;STAT2,4,6:-0.451325687863;PAX5:-0.457087525497;MTE{core}:-0.461788027059;HOX{A5,B5}:-0.463335840812;UFEwm:-0.490550233223;MEF2{A,B,C,D}:-0.491987831484;TLX1..3_NFIC{dimer}:-0.494140119074;EP300:-0.519371051075;ALX4:-0.544967820336;STAT1,3:-0.561586775433;RXR{A,B,G}:-0.571017774926;NHLH1,2:-0.586627272754;ZNF384:-0.591253231041;TFCP2:-0.602595519555;PAX4:-0.60642005977;TFAP2{A,C}:-0.62106905885;PRDM1:-0.632613019305;NFATC1..3:-0.634038948678;ZIC1..3:-0.635160460186;GZF1:-0.636879426721;ZNF238:-0.647573727541;NR3C1:-0.652549457872;EBF1:-0.667631186805;ZNF423:-0.685222823791;GATA4:-0.687560806851;PAX1,9:-0.720599182958;HES1:-0.731529296433;SRF:-0.731963259443;POU2F1..3:-0.766146880135;HIC1:-0.777900484362;HMX1:-0.778537108024;GFI1B:-0.812612380855;GTF2A1,2:-0.812835315726;MTF1:-0.842867832694;ZNF148:-0.846441284134;GTF2I:-0.8498497831;TFAP2B:-0.868029910152;NFE2L1:-0.868836333353;POU3F1..4:-0.90609608512;MYFfamily:-0.943569138717;SP1:-0.996266028086;SPZ1:-1.00357495588;XCPE1{core}:-1.00689312383;MAFB:-1.0176752041;GCM1,2:-1.02587108704;TBP:-1.04045267671;TGIF1:-1.0574574822;PAX3,7:-1.06786182805;POU5F1:-1.11439196279;PATZ1:-1.11529022147;RREB1:-1.14296682957;MAZ:-1.15880684216;SMAD1..7,9:-1.23443752899;EGR1..3:-1.25239768049;MZF1:-1.533244892;NANOG{mouse}:-1.56411535569;TFAP4:-1.60160222188 | |top_motifs=ELK1,4_GABP{A,B1}:2.40287911666;bHLH_family:1.93744048766;SNAI1..3:1.78488528102;ZEB1:1.65167713154;CRX:1.43491339352;ARID5B:1.41507089406;FOX{I1,J2}:1.39782672364;FOXQ1:1.39126680145;FOXN1:1.37817321783;MYOD1:1.29651393549;PPARG:1.23906263098;AHR_ARNT_ARNT2:1.14670345638;NRF1:1.12388735175;NKX6-1,2:1.12050913446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05470132832;FOXD3:0.959529809605;ZBTB16:0.949405931637;PITX1..3:0.894788508273;HIF1A:0.888999135481;CDC5L:0.844029830858;FOXA2:0.826833658386;TEF:0.791693223667;ONECUT1,2:0.776755860688;ADNP_IRX_SIX_ZHX:0.71934898024;SREBF1,2:0.718833343884;ELF1,2,4:0.692528625664;NFE2L2:0.682674363492;YY1:0.66815015367;RFX2..5_RFXANK_RFXAP:0.661821958496;FOXM1:0.631503188704;RFX1:0.615824070398;POU1F1:0.614665083288;T:0.602659996485;NFE2:0.584014552702;FOXP1:0.567542029433;HOXA9_MEIS1:0.553329672471;FOS_FOS{B,L1}_JUN{B,D}:0.488333210687;VSX1,2:0.479054153106;NFY{A,B,C}:0.472817691946;BACH2:0.472391615949;ZNF143:0.449861740209;DBP:0.378197699903;FOSL2:0.361484413544;TOPORS:0.359010856587;FOXP3:0.358345982732;CDX1,2,4:0.353493204388;LHX3,4:0.344606107903;RORA:0.339738518262;HAND1,2:0.336919816881;ATF5_CREB3:0.334828475407;E2F1..5:0.298800342858;TBX4,5:0.29655627572;PDX1:0.296240117962;TFDP1:0.288511488304;ATF4:0.28084087843;TEAD1:0.280628546189;LMO2:0.276831189595;TLX2:0.248554581984;CREB1:0.227154324793;IKZF2:0.224268834694;IKZF1:0.203880511446;OCT4_SOX2{dimer}:0.180049322715;HMGA1,2:0.173754653282;NFIL3:0.161333808256;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.146258190033;HSF1,2:0.138383234104;EN1,2:0.135750295448;NR6A1:0.126332629884;EVI1:0.121877255889;POU6F1:0.093745684416;PAX2:0.0813545094923;ATF2:0.0730932196986;SOX2:0.0632436712158;HOX{A4,D4}:0.055714445126;NFIX:0.0317444517799;HBP1_HMGB_SSRP1_UBTF:0.0292596978672;HNF1A:0.0209183655707;NANOG:0.0172106238928;XBP1:0.0124116991552;FOX{D1,D2}:0.00959223592182;FOX{F1,F2,J1}:0.00700453621171;ATF6:-0.00879130257769;FOXL1:-0.0179320619564;ALX1:-0.0258073940013;JUN:-0.0359135798467;ESR1:-0.0406781009088;ESRRA:-0.0461393782856;PAX8:-0.0481372417654;HLF:-0.0596357336754;RXRA_VDR{dimer}:-0.0635112644592;NKX3-1:-0.0741462850818;CEBPA,B_DDIT3:-0.0745560800492;NFKB1_REL_RELA:-0.0751294074682;IRF1,2:-0.0781156041732;NKX2-2,8:-0.0861457746638;MYB:-0.089599036365;CUX2:-0.0914419213715;LEF1_TCF7_TCF7L1,2:-0.0916942634375;NKX2-1,4:-0.100463624631;HOX{A6,A7,B6,B7}:-0.102413025477;PBX1:-0.118357608049;IRF7:-0.120114805459;TP53:-0.134740999596;BPTF:-0.141007405648;SOX{8,9,10}:-0.14154684747;MED-1{core}:-0.143230042779;RBPJ:-0.149301271848;FOXO1,3,4:-0.157317813588;GATA6:-0.158203149994;NR5A1,2:-0.162706593832;GLI1..3:-0.179824399915;SOX17:-0.189178861766;AIRE:-0.210793914178;DMAP1_NCOR{1,2}_SMARC:-0.210817127875;HNF4A_NR2F1,2:-0.215376999772;SOX5:-0.223296284119;NR1H4:-0.233612818361;NKX3-2:-0.267632029153;AR:-0.279948306687;TAL1_TCF{3,4,12}:-0.290538103805;ZBTB6:-0.297204435691;GFI1:-0.303312692931;ETS1,2:-0.332094554327;MYBL2:-0.334657920239;KLF4:-0.341138990585;REST:-0.342462059903;NKX2-3_NKX2-5:-0.360722589067;BREu{core}:-0.363147476122;ZFP161:-0.368939733846;STAT5{A,B}:-0.374930669083;PRRX1,2:-0.37915881117;SPI1:-0.395130758598;RUNX1..3:-0.409212496049;PAX6:-0.425948925495;SPIB:-0.444888682474;STAT2,4,6:-0.451325687863;PAX5:-0.457087525497;MTE{core}:-0.461788027059;HOX{A5,B5}:-0.463335840812;UFEwm:-0.490550233223;MEF2{A,B,C,D}:-0.491987831484;TLX1..3_NFIC{dimer}:-0.494140119074;EP300:-0.519371051075;ALX4:-0.544967820336;STAT1,3:-0.561586775433;RXR{A,B,G}:-0.571017774926;NHLH1,2:-0.586627272754;ZNF384:-0.591253231041;TFCP2:-0.602595519555;PAX4:-0.60642005977;TFAP2{A,C}:-0.62106905885;PRDM1:-0.632613019305;NFATC1..3:-0.634038948678;ZIC1..3:-0.635160460186;GZF1:-0.636879426721;ZNF238:-0.647573727541;NR3C1:-0.652549457872;EBF1:-0.667631186805;ZNF423:-0.685222823791;GATA4:-0.687560806851;PAX1,9:-0.720599182958;HES1:-0.731529296433;SRF:-0.731963259443;POU2F1..3:-0.766146880135;HIC1:-0.777900484362;HMX1:-0.778537108024;GFI1B:-0.812612380855;GTF2A1,2:-0.812835315726;MTF1:-0.842867832694;ZNF148:-0.846441284134;GTF2I:-0.8498497831;TFAP2B:-0.868029910152;NFE2L1:-0.868836333353;POU3F1..4:-0.90609608512;MYFfamily:-0.943569138717;SP1:-0.996266028086;SPZ1:-1.00357495588;XCPE1{core}:-1.00689312383;MAFB:-1.0176752041;GCM1,2:-1.02587108704;TBP:-1.04045267671;TGIF1:-1.0574574822;PAX3,7:-1.06786182805;POU5F1:-1.11439196279;PATZ1:-1.11529022147;RREB1:-1.14296682957;MAZ:-1.15880684216;SMAD1..7,9:-1.23443752899;EGR1..3:-1.25239768049;MZF1:-1.533244892;NANOG{mouse}:-1.56411535569;TFAP4:-1.60160222188 | ||
|xref= | |||
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Latest revision as of 14:26, 3 June 2020
| Name: | squamous cell lung carcinoma cell line:EBC-1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11273 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11273
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11273
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0706 |
| 10 | 10 | 0.0476 |
| 100 | 100 | 0.0438 |
| 101 | 101 | 0.633 |
| 102 | 102 | 0.826 |
| 103 | 103 | 0.173 |
| 104 | 104 | 0.347 |
| 105 | 105 | 0.514 |
| 106 | 106 | 0.063 |
| 107 | 107 | 0.176 |
| 108 | 108 | 0.703 |
| 109 | 109 | 0.021 |
| 11 | 11 | 0.997 |
| 110 | 110 | 0.247 |
| 111 | 111 | 0.0779 |
| 112 | 112 | 0.954 |
| 113 | 113 | 0.109 |
| 114 | 114 | 0.134 |
| 115 | 115 | 0.023 |
| 116 | 116 | 0.225 |
| 117 | 117 | 0.0183 |
| 118 | 118 | 0.51 |
| 119 | 119 | 0.0975 |
| 12 | 12 | 0.792 |
| 120 | 120 | 0.124 |
| 121 | 121 | 0.944 |
| 122 | 122 | 0.309 |
| 123 | 123 | 0.0256 |
| 124 | 124 | 0.47 |
| 125 | 125 | 0.637 |
| 126 | 126 | 0.641 |
| 127 | 127 | 0.632 |
| 128 | 128 | 0.0168 |
| 129 | 129 | 0.436 |
| 13 | 13 | 0.0171 |
| 130 | 130 | 0.566 |
| 131 | 131 | 0.235 |
| 132 | 132 | 0.236 |
| 133 | 133 | 0.122 |
| 134 | 134 | 0.182 |
| 135 | 135 | 0.063 |
| 136 | 136 | 0.208 |
| 137 | 137 | 0.488 |
| 138 | 138 | 0.912 |
| 139 | 139 | 0.274 |
| 14 | 14 | 0.799 |
| 140 | 140 | 0.489 |
| 141 | 141 | 0.37 |
| 142 | 142 | 0.301 |
| 143 | 143 | 0.0162 |
| 144 | 144 | 0.0285 |
| 145 | 145 | 0.574 |
| 146 | 146 | 0.41 |
| 147 | 147 | 0.997 |
| 148 | 148 | 0.0511 |
| 149 | 149 | 0.947 |
| 15 | 15 | 0.106 |
| 150 | 150 | 0.781 |
| 151 | 151 | 0.733 |
| 152 | 152 | 0.231 |
| 153 | 153 | 0.856 |
| 154 | 154 | 0.941 |
| 155 | 155 | 0.862 |
| 156 | 156 | 0.495 |
| 157 | 157 | 0.948 |
| 158 | 158 | 0.888 |
| 159 | 159 | 0.216 |
| 16 | 16 | 0.788 |
| 160 | 160 | 0.388 |
| 161 | 161 | 0.674 |
| 162 | 162 | 0.893 |
| 163 | 163 | 0.787 |
| 164 | 164 | 0.0761 |
| 165 | 165 | 0.428 |
| 166 | 166 | 0.299 |
| 167 | 167 | 0.0242 |
| 168 | 168 | 0.61 |
| 169 | 169 | 0.46 |
| 17 | 17 | 0.955 |
| 18 | 18 | 0.724 |
| 19 | 19 | 0.638 |
| 2 | 2 | 0.412 |
| 20 | 20 | 0.0624 |
| 21 | 21 | 0.342 |
| 22 | 22 | 0.575 |
| 23 | 23 | 0.148 |
| 24 | 24 | 0.0879 |
| 25 | 25 | 0.448 |
| 26 | 26 | 0.839 |
| 27 | 27 | 0.612 |
| 28 | 28 | 0.305 |
| 29 | 29 | 0.0402 |
| 3 | 3 | 0.407 |
| 30 | 30 | 0.535 |
| 31 | 31 | 0.365 |
| 32 | 32 | 0.0131 |
| 33 | 33 | 0.0739 |
| 34 | 34 | 0.102 |
| 35 | 35 | 0.498 |
| 36 | 36 | 0.0242 |
| 37 | 37 | 0.527 |
| 38 | 38 | 0.533 |
| 39 | 39 | 0.457 |
| 4 | 4 | 0.917 |
| 40 | 40 | 0.0215 |
| 41 | 41 | 0.491 |
| 42 | 42 | 0.219 |
| 43 | 43 | 0.71 |
| 44 | 44 | 0.52 |
| 45 | 45 | 0.635 |
| 46 | 46 | 0.895 |
| 47 | 47 | 0.313 |
| 48 | 48 | 0.535 |
| 49 | 49 | 0.984 |
| 5 | 5 | 0.66 |
| 50 | 50 | 0.705 |
| 51 | 51 | 0.908 |
| 52 | 52 | 0.146 |
| 53 | 53 | 0.747 |
| 54 | 54 | 0.717 |
| 55 | 55 | 0.866 |
| 56 | 56 | 0.928 |
| 57 | 57 | 0.351 |
| 58 | 58 | 0.983 |
| 59 | 59 | 0.404 |
| 6 | 6 | 0.545 |
| 60 | 60 | 0.578 |
| 61 | 61 | 0.302 |
| 62 | 62 | 0.705 |
| 63 | 63 | 0.343 |
| 64 | 64 | 0.937 |
| 65 | 65 | 0.397 |
| 66 | 66 | 0.119 |
| 67 | 67 | 0.905 |
| 68 | 68 | 0.0117 |
| 69 | 69 | 0.208 |
| 7 | 7 | 0.0738 |
| 70 | 70 | 0.0296 |
| 71 | 71 | 0.236 |
| 72 | 72 | 0.921 |
| 73 | 73 | 0.421 |
| 74 | 74 | 0.765 |
| 75 | 75 | 0.0116 |
| 76 | 76 | 0.0887 |
| 77 | 77 | 0.82 |
| 78 | 78 | 0.161 |
| 79 | 79 | 0.0546 |
| 8 | 8 | 0.665 |
| 80 | 80 | 0.573 |
| 81 | 81 | 0.477 |
| 82 | 82 | 0.523 |
| 83 | 83 | 0.538 |
| 84 | 84 | 0.684 |
| 85 | 85 | 0.327 |
| 86 | 86 | 0.462 |
| 87 | 87 | 0.0809 |
| 88 | 88 | 0.82 |
| 89 | 89 | 0.429 |
| 9 | 9 | 0.0919 |
| 90 | 90 | 0.176 |
| 91 | 91 | 0.885 |
| 92 | 92 | 0.588 |
| 93 | 93 | 0.836 |
| 94 | 94 | 0.901 |
| 95 | 95 | 0.201 |
| 96 | 96 | 0.788 |
| 97 | 97 | 0.723 |
| 98 | 98 | 0.501 |
| 99 | 99 | 0.066 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11273
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103001 EBC-1 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102202 (lung squamous cell carcinoma cell line sample)
0103001 (EBC-1 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
