FF:10418-106C4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005781 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008028;DRR008900;DRZ000325;DRZ001710;DRZ011675;DRZ013060 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001255,UBERON:0002100,UBERON:0000483,UBERON:0004645,UBERON:0005910,UBERON:0000479,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0004923,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0002323,UBERON:0000489,UBERON:0003350,UBERON:0005177,UBERON:0000486,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0000365,UBERON:0001556,UBERON:0001008,UBERON:0001256,UBERON:0001259 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:1001319,CL:1000600 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0102868,FF:0100792,FF:0102869,FF:0103137 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100792,FF:0101120 | |fonse_cell_line=FF:0100792,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100792,FF:0101120 | |fonse_cell_line_closure=FF:0100792,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253a5637.CNhs10735.10418-106C4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253a5637.CNhs10735.10418-106C4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253a5637.CNhs10735.10418-106C4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253a5637.CNhs10735.10418-106C4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253a5637.CNhs10735.10418-106C4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10418-106C4 | |id=FF:10418-106C4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103137 | ||
|is_obsolete= | |||
|library_id=CNhs10735 | |||
|library_id_phase_based=2:CNhs10735 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10418 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10418 | |||
|name=transitional-cell carcinoma cell line:5637 | |name=transitional-cell carcinoma cell line:5637 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10735,LSID691,release008,COMPLETED | |profile_hcage=CNhs10735,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=19.726 | |rna_weight_ug=19.726 | ||
|sample_age=68 | |sample_age=68 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1191 | |sample_cell_catalog=RCB1191 | ||
|sample_cell_line=5637 | |sample_cell_line=5637 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.35582852865444e-263!GO:0043226;organelle;8.92558131803834e-217!GO:0043229;intracellular organelle;4.35576667702031e-216!GO:0043231;intracellular membrane-bound organelle;1.43468769403217e-205!GO:0043227;membrane-bound organelle;1.99202003296431e-205!GO:0005737;cytoplasm;3.02861885462594e-170!GO:0044422;organelle part;2.18685086546354e-154!GO:0044446;intracellular organelle part;8.52785513444136e-153!GO:0005634;nucleus;2.72312530024434e-107!GO:0044444;cytoplasmic part;1.10295365073624e-102!GO:0032991;macromolecular complex;6.75775330690799e-102!GO:0044237;cellular metabolic process;1.5506543421437e-99!GO:0044238;primary metabolic process;3.47231426053957e-98!GO:0043170;macromolecule metabolic process;4.46204656592404e-95!GO:0044428;nuclear part;5.95216992114643e-90!GO:0005515;protein binding;4.95481793400338e-86!GO:0030529;ribonucleoprotein complex;3.79779225784755e-82!GO:0003723;RNA binding;3.18784950349028e-76!GO:0043233;organelle lumen;7.78128807646657e-76!GO:0031974;membrane-enclosed lumen;7.78128807646657e-76!GO:0043283;biopolymer metabolic process;3.41236049272087e-64!GO:0016043;cellular component organization and biogenesis;1.86535548745221e-58!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.13194126712435e-57!GO:0010467;gene expression;4.86171432979975e-55!GO:0006396;RNA processing;1.97011558719746e-54!GO:0031981;nuclear lumen;2.25902006202014e-53!GO:0043234;protein complex;9.32680248710766e-53!GO:0005739;mitochondrion;1.15659428017296e-50!GO:0019538;protein metabolic process;1.47892914594005e-49!GO:0006412;translation;3.35870918895798e-48!GO:0043228;non-membrane-bound organelle;9.46761903171805e-47!GO:0043232;intracellular non-membrane-bound organelle;9.46761903171805e-47!GO:0005840;ribosome;2.34573818911266e-45!GO:0031090;organelle membrane;1.13552426624356e-44!GO:0033036;macromolecule localization;1.63107744671144e-44!GO:0044267;cellular protein metabolic process;1.76161481673988e-44!GO:0016071;mRNA metabolic process;2.33954501901316e-44!GO:0044260;cellular macromolecule metabolic process;9.90571077755793e-44!GO:0015031;protein transport;2.01767701286133e-43!GO:0006996;organelle organization and biogenesis;2.03863112526773e-42!GO:0006259;DNA metabolic process;1.92278448773704e-41!GO:0008380;RNA splicing;3.82569715221467e-40!GO:0008104;protein localization;1.04804528665887e-39!GO:0045184;establishment of protein localization;3.25668460695092e-39!GO:0046907;intracellular transport;3.31647908129989e-39!GO:0003735;structural constituent of ribosome;9.84853060409925e-39!GO:0006397;mRNA processing;2.39844730929846e-38!GO:0007049;cell cycle;7.13765638051762e-38!GO:0031967;organelle envelope;2.43756994548724e-37!GO:0031975;envelope;6.20926891360483e-37!GO:0065003;macromolecular complex assembly;1.37777178660564e-36!GO:0044249;cellular biosynthetic process;8.21018888848173e-36!GO:0003676;nucleic acid binding;1.14481233680925e-35!GO:0009058;biosynthetic process;7.32329488816532e-35!GO:0005654;nucleoplasm;1.70421593271562e-34!GO:0044429;mitochondrial part;6.61625069775017e-34!GO:0005829;cytosol;1.07786666503639e-33!GO:0009059;macromolecule biosynthetic process;3.4707397648221e-33!GO:0033279;ribosomal subunit;5.92864689313464e-33!GO:0022607;cellular component assembly;2.59541433922363e-32!GO:0006886;intracellular protein transport;5.5240642113134e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.11365423880577e-31!GO:0000166;nucleotide binding;1.46741298790454e-30!GO:0016070;RNA metabolic process;9.34232286044134e-30!GO:0005681;spliceosome;2.00602347954495e-28!GO:0044451;nucleoplasm part;7.91758496575902e-28!GO:0022402;cell cycle process;7.23780007834373e-27!GO:0051649;establishment of cellular localization;2.02396298380961e-26!GO:0000278;mitotic cell cycle;2.29760828866927e-26!GO:0051641;cellular localization;4.53904936035742e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.29843966814688e-24!GO:0006974;response to DNA damage stimulus;5.6477975582124e-24!GO:0016462;pyrophosphatase activity;1.15621991476619e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.96231087332721e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.44281895450705e-22!GO:0017111;nucleoside-triphosphatase activity;2.54154077964327e-22!GO:0005740;mitochondrial envelope;3.76938139275115e-22!GO:0005694;chromosome;4.30752307515126e-22!GO:0019866;organelle inner membrane;1.16954548632634e-21!GO:0032553;ribonucleotide binding;2.16858143775669e-21!GO:0032555;purine ribonucleotide binding;2.16858143775669e-21!GO:0006281;DNA repair;2.43491778688861e-21!GO:0012505;endomembrane system;3.69266581172541e-21!GO:0017076;purine nucleotide binding;1.11780042808323e-20!GO:0031966;mitochondrial membrane;1.30697297315036e-20!GO:0022403;cell cycle phase;1.38736089132736e-20!GO:0000087;M phase of mitotic cell cycle;3.48001505934768e-20!GO:0044445;cytosolic part;8.70375913823338e-20!GO:0007067;mitosis;9.22228534595563e-20!GO:0051301;cell division;1.40321411565783e-19!GO:0005743;mitochondrial inner membrane;1.41185064241264e-19!GO:0016874;ligase activity;2.27755346651237e-19!GO:0022618;protein-RNA complex assembly;2.44913244691434e-19!GO:0051276;chromosome organization and biogenesis;3.73505223248961e-19!GO:0005730;nucleolus;4.05296345235068e-19!GO:0006119;oxidative phosphorylation;4.31669839675889e-19!GO:0006260;DNA replication;4.32698558354257e-19!GO:0044427;chromosomal part;1.21925752593645e-18!GO:0015935;small ribosomal subunit;2.8047341861882e-18!GO:0008134;transcription factor binding;1.25269704471164e-17!GO:0006605;protein targeting;1.52542217338848e-17!GO:0006457;protein folding;2.30587164590601e-17!GO:0005524;ATP binding;2.47416744084552e-17!GO:0006366;transcription from RNA polymerase II promoter;3.3696692029892e-17!GO:0043285;biopolymer catabolic process;4.02148347049645e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.96599335615734e-17!GO:0009719;response to endogenous stimulus;6.52833252984075e-17!GO:0019941;modification-dependent protein catabolic process;7.03147368508168e-17!GO:0043632;modification-dependent macromolecule catabolic process;7.03147368508168e-17!GO:0032559;adenyl ribonucleotide binding;7.39436509122053e-17!GO:0006512;ubiquitin cycle;1.02699881991556e-16!GO:0000279;M phase;1.02990913374034e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.31715413596801e-16!GO:0044257;cellular protein catabolic process;1.93431974829998e-16!GO:0044265;cellular macromolecule catabolic process;2.87741517423761e-16!GO:0005783;endoplasmic reticulum;2.97912486686939e-16!GO:0005635;nuclear envelope;4.18616038850605e-16!GO:0030554;adenyl nucleotide binding;4.31390452422173e-16!GO:0044455;mitochondrial membrane part;4.92753065602191e-16!GO:0030163;protein catabolic process;7.13326187155014e-16!GO:0015934;large ribosomal subunit;7.30371958565484e-16!GO:0048770;pigment granule;9.00834564413232e-16!GO:0042470;melanosome;9.00834564413232e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.24422814047012e-15!GO:0050794;regulation of cellular process;1.28090431074865e-15!GO:0008135;translation factor activity, nucleic acid binding;1.40101307392955e-15!GO:0031965;nuclear membrane;1.60153071229707e-15!GO:0043412;biopolymer modification;1.9473818404019e-15!GO:0044453;nuclear membrane part;3.08777814191635e-15!GO:0031980;mitochondrial lumen;7.85740407969661e-15!GO:0005759;mitochondrial matrix;7.85740407969661e-15!GO:0009057;macromolecule catabolic process;8.15662650958637e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;8.16849385463998e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;8.89704095410128e-15!GO:0000375;RNA splicing, via transesterification reactions;8.89704095410128e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.89704095410128e-15!GO:0044432;endoplasmic reticulum part;2.01842454283374e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.86167826500394e-14!GO:0006913;nucleocytoplasmic transport;3.43192527273445e-14!GO:0048193;Golgi vesicle transport;3.45902359632154e-14!GO:0006323;DNA packaging;3.64538228174248e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.0251562181276e-13!GO:0005746;mitochondrial respiratory chain;1.34235144384691e-13!GO:0051169;nuclear transport;1.40512810597963e-13!GO:0051726;regulation of cell cycle;1.4683216618399e-13!GO:0006464;protein modification process;1.54900515137072e-13!GO:0042254;ribosome biogenesis and assembly;2.01159526597589e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.77977850338238e-13!GO:0003954;NADH dehydrogenase activity;2.77977850338238e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.77977850338238e-13!GO:0005643;nuclear pore;2.84374405326736e-13!GO:0004386;helicase activity;2.93804259978924e-13!GO:0000074;regulation of progression through cell cycle;3.00997695671391e-13!GO:0050657;nucleic acid transport;4.30691109410912e-13!GO:0051236;establishment of RNA localization;4.30691109410912e-13!GO:0050658;RNA transport;4.30691109410912e-13!GO:0005761;mitochondrial ribosome;4.50882054424832e-13!GO:0000313;organellar ribosome;4.50882054424832e-13!GO:0043687;post-translational protein modification;4.89315462810224e-13!GO:0006403;RNA localization;5.48140527761384e-13!GO:0016604;nuclear body;8.16575859363771e-13!GO:0051082;unfolded protein binding;8.21243771810695e-13!GO:0012501;programmed cell death;8.75670495667716e-13!GO:0006915;apoptosis;1.80084637488466e-12!GO:0005794;Golgi apparatus;1.92070374228172e-12!GO:0003743;translation initiation factor activity;2.37764519166158e-12!GO:0016887;ATPase activity;2.42050076820731e-12!GO:0016192;vesicle-mediated transport;2.491857085805e-12!GO:0044248;cellular catabolic process;5.85383918899816e-12!GO:0006413;translational initiation;7.90534871476629e-12!GO:0006461;protein complex assembly;1.00908127014278e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.53331154597213e-11!GO:0042623;ATPase activity, coupled;1.85429177824699e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.61571213475839e-11!GO:0042773;ATP synthesis coupled electron transport;2.61571213475839e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.33947777362444e-11!GO:0045271;respiratory chain complex I;3.33947777362444e-11!GO:0005747;mitochondrial respiratory chain complex I;3.33947777362444e-11!GO:0005789;endoplasmic reticulum membrane;3.94823014952586e-11!GO:0048523;negative regulation of cellular process;4.86019222401285e-11!GO:0051186;cofactor metabolic process;4.89574657303495e-11!GO:0015630;microtubule cytoskeleton;5.37624923631111e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.48260168827522e-11!GO:0008219;cell death;5.77524560984395e-11!GO:0016265;death;5.77524560984395e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.49799827852567e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.96757081955557e-11!GO:0050789;regulation of biological process;6.99841599574467e-11!GO:0051028;mRNA transport;7.71932287574418e-11!GO:0006446;regulation of translational initiation;1.25381514804715e-10!GO:0003712;transcription cofactor activity;1.33293174571279e-10!GO:0008026;ATP-dependent helicase activity;1.38743220479309e-10!GO:0019222;regulation of metabolic process;1.6908514879689e-10!GO:0016607;nuclear speck;1.79872243911553e-10!GO:0008565;protein transporter activity;2.20218040733415e-10!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.41896478825112e-10!GO:0046930;pore complex;3.03478916613347e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.12433026512845e-10!GO:0000785;chromatin;3.60129834670145e-10!GO:0065002;intracellular protein transport across a membrane;4.45620958035211e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.15615857392116e-10!GO:0017038;protein import;6.57125102401972e-10!GO:0006399;tRNA metabolic process;8.03850104075864e-10!GO:0016568;chromatin modification;8.26628653136567e-10!GO:0009055;electron carrier activity;9.86131286277603e-10!GO:0008639;small protein conjugating enzyme activity;1.03727271163645e-09!GO:0065004;protein-DNA complex assembly;1.34722716506553e-09!GO:0006732;coenzyme metabolic process;1.42978497213039e-09!GO:0031324;negative regulation of cellular metabolic process;1.81054476712618e-09!GO:0004842;ubiquitin-protein ligase activity;2.42695794031259e-09!GO:0051246;regulation of protein metabolic process;2.48971366228942e-09!GO:0006261;DNA-dependent DNA replication;3.50181939658795e-09!GO:0006333;chromatin assembly or disassembly;3.67195866750003e-09!GO:0005819;spindle;3.68391266127366e-09!GO:0019787;small conjugating protein ligase activity;5.18888054772342e-09!GO:0048519;negative regulation of biological process;5.3298839026925e-09!GO:0006364;rRNA processing;6.72687500508976e-09!GO:0005667;transcription factor complex;7.42410148549843e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.65830263440786e-09!GO:0016072;rRNA metabolic process;1.0289114281094e-08!GO:0009892;negative regulation of metabolic process;1.0386196121074e-08!GO:0043067;regulation of programmed cell death;1.32120443509486e-08!GO:0042981;regulation of apoptosis;1.467529649822e-08!GO:0009259;ribonucleotide metabolic process;1.467529649822e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.66891374208028e-08!GO:0043623;cellular protein complex assembly;2.14347123870763e-08!GO:0005793;ER-Golgi intermediate compartment;2.49381505342298e-08!GO:0006163;purine nucleotide metabolic process;3.21351649400619e-08!GO:0000775;chromosome, pericentric region;3.56999039514356e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.15405596679261e-08!GO:0016881;acid-amino acid ligase activity;4.25417011032339e-08!GO:0009060;aerobic respiration;4.373642598196e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.84976692614156e-08!GO:0003924;GTPase activity;5.08925582227151e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.40500603734969e-08!GO:0043566;structure-specific DNA binding;7.76319701464911e-08!GO:0006793;phosphorus metabolic process;1.1097155904899e-07!GO:0006796;phosphate metabolic process;1.1097155904899e-07!GO:0051170;nuclear import;1.38997638509684e-07!GO:0045333;cellular respiration;1.401245245607e-07!GO:0009150;purine ribonucleotide metabolic process;1.40934917737268e-07!GO:0031323;regulation of cellular metabolic process;1.42265379889864e-07!GO:0005813;centrosome;1.42438707376042e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.42438707376042e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.77285798456878e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.77285798456878e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.77285798456878e-07!GO:0032446;protein modification by small protein conjugation;1.79807709142995e-07!GO:0051329;interphase of mitotic cell cycle;1.9338808686226e-07!GO:0016564;transcription repressor activity;2.02174780184645e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.24394829093627e-07!GO:0009056;catabolic process;2.24709409332528e-07!GO:0048475;coated membrane;2.49123306972217e-07!GO:0030117;membrane coat;2.49123306972217e-07!GO:0007010;cytoskeleton organization and biogenesis;2.91923112280942e-07!GO:0007051;spindle organization and biogenesis;2.91923112280942e-07!GO:0006606;protein import into nucleus;3.01182212366172e-07!GO:0051325;interphase;3.07332787711222e-07!GO:0015986;ATP synthesis coupled proton transport;3.1852420178543e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.1852420178543e-07!GO:0007005;mitochondrion organization and biogenesis;3.27820880455342e-07!GO:0006164;purine nucleotide biosynthetic process;3.28032276645878e-07!GO:0043038;amino acid activation;3.35506595989117e-07!GO:0006418;tRNA aminoacylation for protein translation;3.35506595989117e-07!GO:0043039;tRNA aminoacylation;3.35506595989117e-07!GO:0009260;ribonucleotide biosynthetic process;3.49809528934382e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.53642968932473e-07!GO:0016567;protein ubiquitination;3.63527117822684e-07!GO:0000245;spliceosome assembly;3.65484018768947e-07!GO:0009141;nucleoside triphosphate metabolic process;3.81638332926084e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.82431339813263e-07!GO:0005815;microtubule organizing center;4.25934986322968e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.98177261100766e-07!GO:0030120;vesicle coat;5.18830231341065e-07!GO:0030662;coated vesicle membrane;5.18830231341065e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.22012683353116e-07!GO:0005525;GTP binding;5.67581602055587e-07!GO:0003682;chromatin binding;6.21665233395418e-07!GO:0016563;transcription activator activity;6.36682530369949e-07!GO:0016481;negative regulation of transcription;6.37099851121169e-07!GO:0045893;positive regulation of transcription, DNA-dependent;7.37403676761069e-07!GO:0048522;positive regulation of cellular process;7.49708905861572e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.76746436563068e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.76746436563068e-07!GO:0016779;nucleotidyltransferase activity;7.7754447232169e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.8843996854493e-07!GO:0016740;transferase activity;9.26219429105614e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.26219429105614e-07!GO:0003697;single-stranded DNA binding;9.28119500069359e-07!GO:0005657;replication fork;1.01398918667524e-06!GO:0046034;ATP metabolic process;1.09343093053423e-06!GO:0006099;tricarboxylic acid cycle;1.24181932719562e-06!GO:0046356;acetyl-CoA catabolic process;1.24181932719562e-06!GO:0043069;negative regulation of programmed cell death;1.31019869634768e-06!GO:0051188;cofactor biosynthetic process;1.32597859129174e-06!GO:0016310;phosphorylation;1.36226508423481e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.41215865172422e-06!GO:0006350;transcription;1.42170371116436e-06!GO:0016787;hydrolase activity;1.45339168193328e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.77202695633701e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.77202695633701e-06!GO:0000075;cell cycle checkpoint;1.89965365431029e-06!GO:0019829;cation-transporting ATPase activity;1.90056425017213e-06!GO:0005768;endosome;2.06614041650528e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.36741275129361e-06!GO:0009117;nucleotide metabolic process;2.9081641766608e-06!GO:0004298;threonine endopeptidase activity;3.14927717043114e-06!GO:0006916;anti-apoptosis;3.50163511827206e-06!GO:0043066;negative regulation of apoptosis;3.54369936601541e-06!GO:0016363;nuclear matrix;3.63187142214872e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.68024446506013e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.68024446506013e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.70505060314742e-06!GO:0019899;enzyme binding;4.3161165743193e-06!GO:0006754;ATP biosynthetic process;4.35683204633544e-06!GO:0006753;nucleoside phosphate metabolic process;4.35683204633544e-06!GO:0051052;regulation of DNA metabolic process;4.61665780432945e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.87296725243652e-06!GO:0044431;Golgi apparatus part;5.07816285883959e-06!GO:0010468;regulation of gene expression;5.30764951401294e-06!GO:0009108;coenzyme biosynthetic process;5.54543465486141e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.09216775926698e-06!GO:0065007;biological regulation;6.38440576007854e-06!GO:0006084;acetyl-CoA metabolic process;6.49040866060974e-06!GO:0006613;cotranslational protein targeting to membrane;7.45381792307887e-06!GO:0006302;double-strand break repair;7.75881838505688e-06!GO:0045941;positive regulation of transcription;7.80101643854738e-06!GO:0005798;Golgi-associated vesicle;8.30966588610958e-06!GO:0032561;guanyl ribonucleotide binding;8.4930866090533e-06!GO:0019001;guanyl nucleotide binding;8.4930866090533e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.67221502998267e-06!GO:0051168;nuclear export;1.05944927482332e-05!GO:0045259;proton-transporting ATP synthase complex;1.13276050964156e-05!GO:0051427;hormone receptor binding;1.39372158548259e-05!GO:0009109;coenzyme catabolic process;1.66376554901576e-05!GO:0008094;DNA-dependent ATPase activity;1.71328373444793e-05!GO:0006334;nucleosome assembly;1.7234251149938e-05!GO:0003724;RNA helicase activity;2.02686240410815e-05!GO:0045786;negative regulation of progression through cell cycle;2.15800035576853e-05!GO:0006950;response to stress;2.35754558651258e-05!GO:0031497;chromatin assembly;2.46227602242602e-05!GO:0003713;transcription coactivator activity;2.76961568587985e-05!GO:0003690;double-stranded DNA binding;2.86270272259759e-05!GO:0007243;protein kinase cascade;2.97271204456787e-05!GO:0035257;nuclear hormone receptor binding;3.08374981047729e-05!GO:0007088;regulation of mitosis;3.31248963219849e-05!GO:0006752;group transfer coenzyme metabolic process;3.54333554742881e-05!GO:0032774;RNA biosynthetic process;3.60949222892587e-05!GO:0006351;transcription, DNA-dependent;4.53666561178636e-05!GO:0051187;cofactor catabolic process;4.64337716829218e-05!GO:0003714;transcription corepressor activity;4.76971407337189e-05!GO:0031988;membrane-bound vesicle;5.06474664167993e-05!GO:0000776;kinetochore;5.34682393547492e-05!GO:0030036;actin cytoskeleton organization and biogenesis;5.79523245764486e-05!GO:0044440;endosomal part;5.9985547386328e-05!GO:0010008;endosome membrane;5.9985547386328e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.41312968920818e-05!GO:0007017;microtubule-based process;6.90583830919739e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.93215167201153e-05!GO:0031252;leading edge;7.00779812121143e-05!GO:0007059;chromosome segregation;7.08067366715612e-05!GO:0005762;mitochondrial large ribosomal subunit;7.28576747695948e-05!GO:0000315;organellar large ribosomal subunit;7.28576747695948e-05!GO:0003729;mRNA binding;7.91937757329475e-05!GO:0043021;ribonucleoprotein binding;7.92441537458113e-05!GO:0016859;cis-trans isomerase activity;7.9260800646748e-05!GO:0003899;DNA-directed RNA polymerase activity;9.9646958407016e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000105356782953623!GO:0005874;microtubule;0.000111921496436139!GO:0006612;protein targeting to membrane;0.000120203345174149!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000121560839659733!GO:0007264;small GTPase mediated signal transduction;0.000130014151586673!GO:0000151;ubiquitin ligase complex;0.000130329192593551!GO:0048518;positive regulation of biological process;0.000145236350085408!GO:0005769;early endosome;0.000147136590618604!GO:0006352;transcription initiation;0.000147877607271151!GO:0042802;identical protein binding;0.000152965813528045!GO:0006402;mRNA catabolic process;0.00018602362265323!GO:0007093;mitotic cell cycle checkpoint;0.000206055355364499!GO:0008654;phospholipid biosynthetic process;0.000211585280215002!GO:0000059;protein import into nucleus, docking;0.000212987766321129!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000215994136224088!GO:0005788;endoplasmic reticulum lumen;0.000233488878286441!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000249683399999956!GO:0000139;Golgi membrane;0.000287515619119958!GO:0008186;RNA-dependent ATPase activity;0.000310479193862441!GO:0016853;isomerase activity;0.000334288477289021!GO:0006310;DNA recombination;0.000356637720217775!GO:0008250;oligosaccharyl transferase complex;0.000378156599303837!GO:0003678;DNA helicase activity;0.00039108107669822!GO:0031982;vesicle;0.000406294973313972!GO:0007052;mitotic spindle organization and biogenesis;0.000412269371467444!GO:0045449;regulation of transcription;0.00041479907207088!GO:0045892;negative regulation of transcription, DNA-dependent;0.000443579965015989!GO:0051789;response to protein stimulus;0.000450841729942953!GO:0006986;response to unfolded protein;0.000450841729942953!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000461850002552288!GO:0030867;rough endoplasmic reticulum membrane;0.000516286641911213!GO:0030029;actin filament-based process;0.0005240508889415!GO:0003702;RNA polymerase II transcription factor activity;0.000535573075286932!GO:0005770;late endosome;0.000548119475481845!GO:0006383;transcription from RNA polymerase III promoter;0.000550965267895807!GO:0065009;regulation of a molecular function;0.000558775059112961!GO:0005885;Arp2/3 protein complex;0.000585658170542667!GO:0005048;signal sequence binding;0.000612406112180494!GO:0031410;cytoplasmic vesicle;0.000637490400277534!GO:0004576;oligosaccharyl transferase activity;0.000679847989064136!GO:0000314;organellar small ribosomal subunit;0.000701667228359083!GO:0005763;mitochondrial small ribosomal subunit;0.000701667228359083!GO:0005876;spindle microtubule;0.000710798336579803!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000735863783210692!GO:0048471;perinuclear region of cytoplasm;0.000747163139655215!GO:0045454;cell redox homeostasis;0.000750146221876549!GO:0006401;RNA catabolic process;0.000768699955931196!GO:0003684;damaged DNA binding;0.000771024743690092!GO:0000082;G1/S transition of mitotic cell cycle;0.000802024993630898!GO:0009967;positive regulation of signal transduction;0.000828093216264804!GO:0006405;RNA export from nucleus;0.00083395536594518!GO:0004004;ATP-dependent RNA helicase activity;0.00087818690941058!GO:0008092;cytoskeletal protein binding;0.00087818690941058!GO:0004674;protein serine/threonine kinase activity;0.000878222712441353!GO:0008033;tRNA processing;0.000911582902065216!GO:0032508;DNA duplex unwinding;0.000918820755572745!GO:0032392;DNA geometric change;0.000918820755572745!GO:0033116;ER-Golgi intermediate compartment membrane;0.000918820755572745!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000948892480138273!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00096615912983605!GO:0006626;protein targeting to mitochondrion;0.000971653493999002!GO:0051252;regulation of RNA metabolic process;0.00100659740667872!GO:0030521;androgen receptor signaling pathway;0.00100663341529477!GO:0016251;general RNA polymerase II transcription factor activity;0.00104113596091704!GO:0019843;rRNA binding;0.00104113596091704!GO:0030118;clathrin coat;0.0010594118202164!GO:0006275;regulation of DNA replication;0.00111099577139104!GO:0009893;positive regulation of metabolic process;0.00129942476231556!GO:0030176;integral to endoplasmic reticulum membrane;0.00130322479027577!GO:0006417;regulation of translation;0.00131775134346983!GO:0006891;intra-Golgi vesicle-mediated transport;0.00137746292898867!GO:0048500;signal recognition particle;0.00140015017023985!GO:0051920;peroxiredoxin activity;0.00142591823779132!GO:0043681;protein import into mitochondrion;0.00144254784042873!GO:0016044;membrane organization and biogenesis;0.0014640808042862!GO:0006268;DNA unwinding during replication;0.00156879064623181!GO:0005856;cytoskeleton;0.00165086552836728!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00168599063689817!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00169553353554685!GO:0006839;mitochondrial transport;0.00175938825330531!GO:0044452;nucleolar part;0.001770923079109!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00177596390313926!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00177596390313926!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00177596390313926!GO:0015980;energy derivation by oxidation of organic compounds;0.00180648827736632!GO:0030133;transport vesicle;0.00184785042587835!GO:0005684;U2-dependent spliceosome;0.00185765604094041!GO:0005905;coated pit;0.00190576634092269!GO:0009116;nucleoside metabolic process;0.00200165451151658!GO:0006355;regulation of transcription, DNA-dependent;0.00206717466946566!GO:0006338;chromatin remodeling;0.00222215858043971!GO:0008139;nuclear localization sequence binding;0.00232105075141721!GO:0008312;7S RNA binding;0.00246404897991492!GO:0006984;ER-nuclear signaling pathway;0.00250729246713775!GO:0016197;endosome transport;0.00250729246713775!GO:0018196;peptidyl-asparagine modification;0.00258051427784079!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00258051427784079!GO:0009889;regulation of biosynthetic process;0.00268147884361529!GO:0030658;transport vesicle membrane;0.0027713711209111!GO:0031124;mRNA 3'-end processing;0.00278064992958852!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0029276354154035!GO:0030880;RNA polymerase complex;0.00308065833567241!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0030914677268672!GO:0009165;nucleotide biosynthetic process;0.00326870293811481!GO:0045045;secretory pathway;0.0033090451971372!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00338087902395581!GO:0000228;nuclear chromosome;0.00339176829079499!GO:0000792;heterochromatin;0.00341506627005172!GO:0005637;nuclear inner membrane;0.00344337494790506!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00363744055169214!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00370762135162986!GO:0045047;protein targeting to ER;0.00370762135162986!GO:0030119;AP-type membrane coat adaptor complex;0.00370762135162986!GO:0051338;regulation of transferase activity;0.00375364934394413!GO:0030132;clathrin coat of coated pit;0.00377251725696491!GO:0043596;nuclear replication fork;0.00382447467702274!GO:0006892;post-Golgi vesicle-mediated transport;0.00388796833004925!GO:0042393;histone binding;0.00398495743744791!GO:0051087;chaperone binding;0.00398495743744791!GO:0003677;DNA binding;0.00417269272346856!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00429524566873343!GO:0006414;translational elongation;0.00434279330971654!GO:0015631;tubulin binding;0.0043901908843492!GO:0030131;clathrin adaptor complex;0.00445854439156237!GO:0046489;phosphoinositide biosynthetic process;0.00447444874482243!GO:0031326;regulation of cellular biosynthetic process;0.00451144345513484!GO:0043624;cellular protein complex disassembly;0.00451838733037711!GO:0009112;nucleobase metabolic process;0.00461130083564358!GO:0035258;steroid hormone receptor binding;0.00464587233516509!GO:0048468;cell development;0.00478191968439453!GO:0051101;regulation of DNA binding;0.00478191968439453!GO:0004527;exonuclease activity;0.00482136502204131!GO:0000922;spindle pole;0.0048956126581382!GO:0031968;organelle outer membrane;0.0049387559717007!GO:0006611;protein export from nucleus;0.00499147043967573!GO:0043488;regulation of mRNA stability;0.00514168618475325!GO:0043487;regulation of RNA stability;0.00514168618475325!GO:0046474;glycerophospholipid biosynthetic process;0.00548947706488634!GO:0006270;DNA replication initiation;0.00604759440706873!GO:0030134;ER to Golgi transport vesicle;0.00610615400892476!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00618337662032111!GO:0000428;DNA-directed RNA polymerase complex;0.00618337662032111!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00646536212400657!GO:0019867;outer membrane;0.0064781462474268!GO:0030663;COPI coated vesicle membrane;0.00652289789017703!GO:0030126;COPI vesicle coat;0.00652289789017703!GO:0042770;DNA damage response, signal transduction;0.00658206711747421!GO:0031072;heat shock protein binding;0.00667530752129625!GO:0030660;Golgi-associated vesicle membrane;0.00679724509771784!GO:0043549;regulation of kinase activity;0.00691450889489991!GO:0032984;macromolecular complex disassembly;0.00709151857743508!GO:0031325;positive regulation of cellular metabolic process;0.00716872103464345!GO:0005773;vacuole;0.0073184307590156!GO:0016584;nucleosome positioning;0.00734350756658771!GO:0008168;methyltransferase activity;0.00775103216658074!GO:0032200;telomere organization and biogenesis;0.00790078309098852!GO:0000723;telomere maintenance;0.00790078309098852!GO:0001558;regulation of cell growth;0.00791054801463761!GO:0043022;ribosome binding;0.00819052762161241!GO:0016741;transferase activity, transferring one-carbon groups;0.00824497035492362!GO:0006378;mRNA polyadenylation;0.00834903399014117!GO:0043241;protein complex disassembly;0.0083851979439458!GO:0030127;COPII vesicle coat;0.0083851979439458!GO:0012507;ER to Golgi transport vesicle membrane;0.0083851979439458!GO:0043065;positive regulation of apoptosis;0.00857036888629973!GO:0030137;COPI-coated vesicle;0.00857167377148331!GO:0008629;induction of apoptosis by intracellular signals;0.00857167377148331!GO:0040029;regulation of gene expression, epigenetic;0.00864339162570207!GO:0031123;RNA 3'-end processing;0.00873150906187418!GO:0051098;regulation of binding;0.00874489466402304!GO:0030433;ER-associated protein catabolic process;0.00893467162071526!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00893467162071526!GO:0003711;transcription elongation regulator activity;0.00893467162071526!GO:0000725;recombinational repair;0.00893467162071526!GO:0000724;double-strand break repair via homologous recombination;0.00893467162071526!GO:0046966;thyroid hormone receptor binding;0.00925900928990604!GO:0007265;Ras protein signal transduction;0.00929147013059139!GO:0006284;base-excision repair;0.00966105650419677!GO:0006818;hydrogen transport;0.00993148622684425!GO:0005791;rough endoplasmic reticulum;0.00993380212968844!GO:0006376;mRNA splice site selection;0.00993380212968844!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00993380212968844!GO:0000910;cytokinesis;0.0100780019847683!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0101230129602259!GO:0007006;mitochondrial membrane organization and biogenesis;0.0101385926533712!GO:0000323;lytic vacuole;0.0101653485977658!GO:0005764;lysosome;0.0101653485977658!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0102215517489951!GO:0015992;proton transport;0.0104166622290959!GO:0030518;steroid hormone receptor signaling pathway;0.0104205297937136!GO:0004518;nuclease activity;0.0104205297937136!GO:0008632;apoptotic program;0.0106290416992255!GO:0001726;ruffle;0.0106912871320382!GO:0005832;chaperonin-containing T-complex;0.0108595218624069!GO:0016272;prefoldin complex;0.011131578363314!GO:0043068;positive regulation of programmed cell death;0.0112050048283341!GO:0006091;generation of precursor metabolites and energy;0.0115651803217322!GO:0006607;NLS-bearing substrate import into nucleus;0.0116219799975336!GO:0033673;negative regulation of kinase activity;0.0116808286699242!GO:0006469;negative regulation of protein kinase activity;0.0116808286699242!GO:0046467;membrane lipid biosynthetic process;0.0117054665413757!GO:0016126;sterol biosynthetic process;0.0117923698203131!GO:0019887;protein kinase regulator activity;0.011799623005347!GO:0030031;cell projection biogenesis;0.0120132605982251!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121686515398776!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121686515398776!GO:0005741;mitochondrial outer membrane;0.0121686515398776!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0123423792251925!GO:0008180;signalosome;0.013051119720355!GO:0005938;cell cortex;0.013237282467483!GO:0006144;purine base metabolic process;0.013237282467483!GO:0008361;regulation of cell size;0.013237282467483!GO:0000049;tRNA binding;0.0135684632640335!GO:0051540;metal cluster binding;0.0137920816286986!GO:0051536;iron-sulfur cluster binding;0.0137920816286986!GO:0051656;establishment of organelle localization;0.0138285343348979!GO:0006595;polyamine metabolic process;0.0138285343348979!GO:0048146;positive regulation of fibroblast proliferation;0.0139650229054381!GO:0051053;negative regulation of DNA metabolic process;0.0139650229054381!GO:0051287;NAD binding;0.0139921807326332!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0141616907576168!GO:0050681;androgen receptor binding;0.0141616907576168!GO:0000339;RNA cap binding;0.0143926764390039!GO:0050790;regulation of catalytic activity;0.0144573949626305!GO:0000786;nucleosome;0.0144573949626305!GO:0016491;oxidoreductase activity;0.014620515834534!GO:0008283;cell proliferation;0.014695962831942!GO:0045859;regulation of protein kinase activity;0.0149599579094555!GO:0000118;histone deacetylase complex;0.015162062209128!GO:0005083;small GTPase regulator activity;0.015230272685192!GO:0008243;plasminogen activator activity;0.0155459945294756!GO:0006695;cholesterol biosynthetic process;0.0156189035235207!GO:0005669;transcription factor TFIID complex;0.0159091760651049!GO:0019207;kinase regulator activity;0.0160270700346561!GO:0008022;protein C-terminus binding;0.0164951601213951!GO:0031570;DNA integrity checkpoint;0.0164951601213951!GO:0048144;fibroblast proliferation;0.0164951601213951!GO:0048145;regulation of fibroblast proliferation;0.0164951601213951!GO:0003746;translation elongation factor activity;0.0166228862244748!GO:0043256;laminin complex;0.0167390524301948!GO:0030125;clathrin vesicle coat;0.0167897342225147!GO:0030665;clathrin coated vesicle membrane;0.0167897342225147!GO:0051348;negative regulation of transferase activity;0.0170187638981644!GO:0048487;beta-tubulin binding;0.0170219087943501!GO:0030027;lamellipodium;0.0172021310613325!GO:0008538;proteasome activator activity;0.0175814238308158!GO:0008637;apoptotic mitochondrial changes;0.0179461243710577!GO:0000819;sister chromatid segregation;0.0180999457863428!GO:0016049;cell growth;0.0185560379031454!GO:0006289;nucleotide-excision repair;0.0192009370562159!GO:0022415;viral reproductive process;0.0193801654960026!GO:0043433;negative regulation of transcription factor activity;0.0194787728502052!GO:0031901;early endosome membrane;0.019486267681923!GO:0006541;glutamine metabolic process;0.0196038469654965!GO:0050662;coenzyme binding;0.0196552408293319!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0205359607094932!GO:0016301;kinase activity;0.0211872677773582!GO:0043601;nuclear replisome;0.0213916399518213!GO:0030894;replisome;0.0213916399518213!GO:0007050;cell cycle arrest;0.0214366810961048!GO:0051128;regulation of cellular component organization and biogenesis;0.0214755950065915!GO:0046983;protein dimerization activity;0.0216872848194248!GO:0004003;ATP-dependent DNA helicase activity;0.0217863061534408!GO:0017166;vinculin binding;0.0219329707574274!GO:0044454;nuclear chromosome part;0.0220923750217044!GO:0007242;intracellular signaling cascade;0.0221837902135298!GO:0035267;NuA4 histone acetyltransferase complex;0.0221844031326082!GO:0043189;H4/H2A histone acetyltransferase complex;0.0224507431365234!GO:0000070;mitotic sister chromatid segregation;0.0224515522793341!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0227103496912009!GO:0015399;primary active transmembrane transporter activity;0.0227103496912009!GO:0030968;unfolded protein response;0.0227446389203974!GO:0000086;G2/M transition of mitotic cell cycle;0.0232140483234871!GO:0030032;lamellipodium biogenesis;0.0233507809262167!GO:0030659;cytoplasmic vesicle membrane;0.0233507809262167!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.024759290264085!GO:0045792;negative regulation of cell size;0.0249263472772905!GO:0051539;4 iron, 4 sulfur cluster binding;0.0251032352913738!GO:0016791;phosphoric monoester hydrolase activity;0.0251283067476268!GO:0030384;phosphoinositide metabolic process;0.0253340652402256!GO:0016569;covalent chromatin modification;0.0257563904167378!GO:0032259;methylation;0.0259968776706756!GO:0005869;dynactin complex;0.0261727053866295!GO:0000726;non-recombinational repair;0.0264018804016748!GO:0006650;glycerophospholipid metabolic process;0.0273864436259831!GO:0008097;5S rRNA binding;0.0277079363163097!GO:0008047;enzyme activator activity;0.0280701144235199!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0280966891990537!GO:0004860;protein kinase inhibitor activity;0.028292367604332!GO:0046822;regulation of nucleocytoplasmic transport;0.0287812596397826!GO:0031625;ubiquitin protein ligase binding;0.0297547208733363!GO:0007162;negative regulation of cell adhesion;0.0297547208733363!GO:0004448;isocitrate dehydrogenase activity;0.0302729259100703!GO:0043414;biopolymer methylation;0.0303791918105986!GO:0001701;in utero embryonic development;0.0303791918105986!GO:0031529;ruffle organization and biogenesis;0.0303872216181224!GO:0045936;negative regulation of phosphate metabolic process;0.0304257493684817!GO:0000209;protein polyubiquitination;0.0307369688818435!GO:0043631;RNA polyadenylation;0.0308462396520818!GO:0006497;protein amino acid lipidation;0.0309184709939977!GO:0044450;microtubule organizing center part;0.0314098035956683!GO:0030308;negative regulation of cell growth;0.0318152659348154!GO:0006406;mRNA export from nucleus;0.0318152659348154!GO:0008276;protein methyltransferase activity;0.0321360179039807!GO:0007034;vacuolar transport;0.0321360179039807!GO:0042026;protein refolding;0.0322640589054092!GO:0032906;transforming growth factor-beta2 production;0.0325723194097217!GO:0032909;regulation of transforming growth factor-beta2 production;0.0325723194097217!GO:0008652;amino acid biosynthetic process;0.0326012389693767!GO:0051059;NF-kappaB binding;0.0326012389693767!GO:0017056;structural constituent of nuclear pore;0.0326021762428307!GO:0016311;dephosphorylation;0.0326572521667266!GO:0006506;GPI anchor biosynthetic process;0.0329478997782201!GO:0005784;translocon complex;0.0329478997782201!GO:0030155;regulation of cell adhesion;0.0331286323782933!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0338297036075772!GO:0008408;3'-5' exonuclease activity;0.0339366004234182!GO:0000018;regulation of DNA recombination;0.0340217762425377!GO:0007346;regulation of progression through mitotic cell cycle;0.0340585853006901!GO:0007004;telomere maintenance via telomerase;0.0341416057849223!GO:0005652;nuclear lamina;0.0344670274415363!GO:0044433;cytoplasmic vesicle part;0.0347304827754183!GO:0008234;cysteine-type peptidase activity;0.0351838450617077!GO:0022890;inorganic cation transmembrane transporter activity;0.0351838450617077!GO:0012506;vesicle membrane;0.035633062609334!GO:0000178;exosome (RNase complex);0.0366076038732707!GO:0007021;tubulin folding;0.0370284314323378!GO:0009119;ribonucleoside metabolic process;0.0374020018336558!GO:0005092;GDP-dissociation inhibitor activity;0.0376185032214644!GO:0008426;protein kinase C inhibitor activity;0.0379349917362155!GO:0030100;regulation of endocytosis;0.0383024330709994!GO:0016408;C-acyltransferase activity;0.0391346980799142!GO:0006505;GPI anchor metabolic process;0.039326973628144!GO:0006672;ceramide metabolic process;0.0394557322203103!GO:0005875;microtubule associated complex;0.0395555175635499!GO:0030833;regulation of actin filament polymerization;0.0397509602285199!GO:0009966;regulation of signal transduction;0.0403611992911773!GO:0030522;intracellular receptor-mediated signaling pathway;0.0404811900401245!GO:0007266;Rho protein signal transduction;0.0409570134478923!GO:0008536;Ran GTPase binding;0.040986807241224!GO:0046426;negative regulation of JAK-STAT cascade;0.0411574926686307!GO:0030140;trans-Golgi network transport vesicle;0.0413982418746346!GO:0046483;heterocycle metabolic process;0.0415846835719084!GO:0000790;nuclear chromatin;0.0421019542415744!GO:0031577;spindle checkpoint;0.0425658326752358!GO:0035035;histone acetyltransferase binding;0.0431679027985594!GO:0003923;GPI-anchor transamidase activity;0.0431679027985594!GO:0016255;attachment of GPI anchor to protein;0.0431679027985594!GO:0042765;GPI-anchor transamidase complex;0.0431679027985594!GO:0000152;nuclear ubiquitin ligase complex;0.0436569981863603!GO:0000123;histone acetyltransferase complex;0.0437983241150775!GO:0005663;DNA replication factor C complex;0.0441222642375559!GO:0008017;microtubule binding;0.044140309409058!GO:0017134;fibroblast growth factor binding;0.0442174603030946!GO:0009303;rRNA transcription;0.0444195315196701!GO:0008610;lipid biosynthetic process;0.0444442020836226!GO:0006301;postreplication repair;0.0446974660979251!GO:0004721;phosphoprotein phosphatase activity;0.0447768309740799!GO:0047485;protein N-terminus binding;0.0448639580484022!GO:0008537;proteasome activator complex;0.0466215697949027!GO:0000781;chromosome, telomeric region;0.0466765570945923!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0466765570945923!GO:0031902;late endosome membrane;0.0469028948838188!GO:0030496;midbody;0.0469028948838188!GO:0001832;blastocyst growth;0.0470109811108023!GO:0008143;poly(A) binding;0.0480150651350421!GO:0042585;germinal vesicle;0.0484958116122808!GO:0022411;cellular component disassembly;0.0486091396403293!GO:0001824;blastocyst development;0.0492472519285969!GO:0007569;cell aging;0.0493024701649625 | |||
|sample_id=10418 | |sample_id=10418 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=bladder | |sample_tissue=bladder | ||
|top_motifs=TFDP1:2.29932951344;NKX2-3_NKX2-5:1.80314964087;SOX2:1.76120332534;E2F1..5:1.70688352682;FOXQ1:1.57093017568;SNAI1..3:1.56188530902;ZEB1:1.54192612298;TBX4,5:1.50465459419;NFY{A,B,C}:1.43829509213;SOX17:1.35014327654;ADNP_IRX_SIX_ZHX:1.29811238796;XCPE1{core}:1.21705857438;BREu{core}:1.19504420474;POU1F1:1.142349982;RBPJ:1.14127626488;FOX{I1,J2}:1.0319296587;ZNF143:0.933726797551;ELK1,4_GABP{A,B1}:0.912103280402;TBP:0.844850671147;SOX{8,9,10}:0.832338053971;LEF1_TCF7_TCF7L1,2:0.828942480957;VSX1,2:0.810186777027;bHLH_family:0.763806817785;TEAD1:0.755640138115;POU5F1:0.734617483555;NRF1:0.700784122091;EN1,2:0.69527376784;ZFP161:0.686740216607;MYOD1:0.639266303774;NKX2-1,4:0.62812023939;T:0.608779717738;CEBPA,B_DDIT3:0.569763438342;ATF4:0.553079127225;TP53:0.551982356699;TEF:0.5103569989;FOXP1:0.500364844186;POU2F1..3:0.474886202645;XBP1:0.473105531403;PITX1..3:0.461139805673;RORA:0.448494252689;SP1:0.447134504623;TFAP2B:0.443654780609;NR1H4:0.438461557221;CDC5L:0.420058079766;MAZ:0.390663083377;ELF1,2,4:0.379883669588;FOXN1:0.36196979004;PBX1:0.337162635764;GFI1:0.335059430295;FOS_FOS{B,L1}_JUN{B,D}:0.333701051309;PRRX1,2:0.309059830679;FOSL2:0.29958154236;HIC1:0.275073489179;ONECUT1,2:0.271084898008;NKX6-1,2:0.269233300951;NFKB1_REL_RELA:0.262350840741;MED-1{core}:0.257075686949;ZNF148:0.246840957911;ATF2:0.225231248923;MYB:0.22121211472;HSF1,2:0.191084216822;ZNF384:0.183726284256;YY1:0.174950855315;HOXA9_MEIS1:0.174639903971;BPTF:0.163421142788;OCT4_SOX2{dimer}:0.156881628209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.153295027193;PAX8:0.151754002616;RREB1:0.147158473766;NANOG:0.140798324837;IRF7:0.132037089656;TFAP2{A,C}:0.130917988152;PAX3,7:0.130823905893;FOXM1:0.113913420755;ARID5B:0.101145969683;BACH2:0.0940744398734;STAT1,3:0.0915878737051;TLX1..3_NFIC{dimer}:0.080076782521;RFX1:0.0746339157649;MTE{core}:0.0737817255595;PAX1,9:0.0684223401904;GTF2A1,2:0.0637786758805;ATF5_CREB3:0.0593132949651;MTF1:0.0574632543391;NFE2:0.057117968135;HAND1,2:0.0532469459852;EGR1..3:0.0203594117715;GFI1B:0.0179931080774;FOXA2:0.00223234351499;STAT5{A,B}:-0.011380806749;PATZ1:-0.0260405604825;GTF2I:-0.0331729812952;CREB1:-0.0512516697516;HNF1A:-0.0612878390466;NKX2-2,8:-0.0820964231097;POU6F1:-0.107694601726;GATA6:-0.120293918762;RXR{A,B,G}:-0.131065625793;CRX:-0.135429311843;HOX{A6,A7,B6,B7}:-0.136889801768;HIF1A:-0.137193502673;ZNF423:-0.174067617304;NKX3-2:-0.191530643186;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.199518440941;NKX3-1:-0.205964283592;ETS1,2:-0.212579561905;ALX1:-0.217997377508;MZF1:-0.225641100533;FOXD3:-0.231380245458;PDX1:-0.234764958105;IKZF1:-0.236261773321;HNF4A_NR2F1,2:-0.237954626086;TFCP2:-0.2434431589;FOXO1,3,4:-0.253073488046;PAX5:-0.255017298685;CUX2:-0.264357378407;IRF1,2:-0.277472337334;NR6A1:-0.288490737766;HBP1_HMGB_SSRP1_UBTF:-0.297499075009;HLF:-0.302992225495;DMAP1_NCOR{1,2}_SMARC:-0.308539969533;FOX{F1,F2,J1}:-0.312365482734;PAX4:-0.315092573502;SREBF1,2:-0.315880843033;PRDM1:-0.318227318324;HOX{A4,D4}:-0.326464599629;MEF2{A,B,C,D}:-0.333183034392;MYBL2:-0.341494503845;HMGA1,2:-0.359846097566;JUN:-0.363536854533;FOX{D1,D2}:-0.364221583799;HOX{A5,B5}:-0.364341102315;RFX2..5_RFXANK_RFXAP:-0.368766385859;LHX3,4:-0.380237951207;ZBTB6:-0.381875191112;AHR_ARNT_ARNT2:-0.392409447924;RUNX1..3:-0.396328892122;SPIB:-0.403106578792;SPI1:-0.405744981768;ZBTB16:-0.425770407107;PAX6:-0.461059685514;NFE2L1:-0.476326299455;SMAD1..7,9:-0.485269728614;NHLH1,2:-0.489071984229;TLX2:-0.503028890736;NR3C1:-0.506865118995;NR5A1,2:-0.51539508865;NFIL3:-0.521453095534;STAT2,4,6:-0.526728835121;REST:-0.547765131672;SPZ1:-0.549650134801;FOXL1:-0.55026941469;HMX1:-0.550910902751;AR:-0.5799768513;TOPORS:-0.585208016031;POU3F1..4:-0.593349956613;PAX2:-0.599960423171;TAL1_TCF{3,4,12}:-0.604436934868;GZF1:-0.605144089079;NFATC1..3:-0.612756996877;EBF1:-0.613542957249;FOXP3:-0.625591442971;LMO2:-0.64480163355;ESR1:-0.659187870429;IKZF2:-0.677158673686;PPARG:-0.683662165234;NFE2L2:-0.698558280149;SOX5:-0.702125212677;KLF4:-0.734192553173;CDX1,2,4:-0.735302441498;ALX4:-0.766330719234;UFEwm:-0.77855446001;ESRRA:-0.79095201918;EVI1:-0.806372406851;TGIF1:-0.844390252546;ZIC1..3:-0.856302381078;MYFfamily:-0.865119079183;DBP:-0.867006884442;AIRE:-0.874002774322;MAFB:-0.893531603159;ATF6:-0.898182747766;SRF:-0.923155770339;GLI1..3:-0.950131237553;TFAP4:-1.0088222092;NFIX:-1.02301171592;RXRA_VDR{dimer}:-1.07813998045;EP300:-1.09546676702;ZNF238:-1.1091698578;GATA4:-1.11148941024;GCM1,2:-1.35732600097;HES1:-1.42579523715;NANOG{mouse}:-1.49698847632 | |top_motifs=TFDP1:2.29932951344;NKX2-3_NKX2-5:1.80314964087;SOX2:1.76120332534;E2F1..5:1.70688352682;FOXQ1:1.57093017568;SNAI1..3:1.56188530902;ZEB1:1.54192612298;TBX4,5:1.50465459419;NFY{A,B,C}:1.43829509213;SOX17:1.35014327654;ADNP_IRX_SIX_ZHX:1.29811238796;XCPE1{core}:1.21705857438;BREu{core}:1.19504420474;POU1F1:1.142349982;RBPJ:1.14127626488;FOX{I1,J2}:1.0319296587;ZNF143:0.933726797551;ELK1,4_GABP{A,B1}:0.912103280402;TBP:0.844850671147;SOX{8,9,10}:0.832338053971;LEF1_TCF7_TCF7L1,2:0.828942480957;VSX1,2:0.810186777027;bHLH_family:0.763806817785;TEAD1:0.755640138115;POU5F1:0.734617483555;NRF1:0.700784122091;EN1,2:0.69527376784;ZFP161:0.686740216607;MYOD1:0.639266303774;NKX2-1,4:0.62812023939;T:0.608779717738;CEBPA,B_DDIT3:0.569763438342;ATF4:0.553079127225;TP53:0.551982356699;TEF:0.5103569989;FOXP1:0.500364844186;POU2F1..3:0.474886202645;XBP1:0.473105531403;PITX1..3:0.461139805673;RORA:0.448494252689;SP1:0.447134504623;TFAP2B:0.443654780609;NR1H4:0.438461557221;CDC5L:0.420058079766;MAZ:0.390663083377;ELF1,2,4:0.379883669588;FOXN1:0.36196979004;PBX1:0.337162635764;GFI1:0.335059430295;FOS_FOS{B,L1}_JUN{B,D}:0.333701051309;PRRX1,2:0.309059830679;FOSL2:0.29958154236;HIC1:0.275073489179;ONECUT1,2:0.271084898008;NKX6-1,2:0.269233300951;NFKB1_REL_RELA:0.262350840741;MED-1{core}:0.257075686949;ZNF148:0.246840957911;ATF2:0.225231248923;MYB:0.22121211472;HSF1,2:0.191084216822;ZNF384:0.183726284256;YY1:0.174950855315;HOXA9_MEIS1:0.174639903971;BPTF:0.163421142788;OCT4_SOX2{dimer}:0.156881628209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.153295027193;PAX8:0.151754002616;RREB1:0.147158473766;NANOG:0.140798324837;IRF7:0.132037089656;TFAP2{A,C}:0.130917988152;PAX3,7:0.130823905893;FOXM1:0.113913420755;ARID5B:0.101145969683;BACH2:0.0940744398734;STAT1,3:0.0915878737051;TLX1..3_NFIC{dimer}:0.080076782521;RFX1:0.0746339157649;MTE{core}:0.0737817255595;PAX1,9:0.0684223401904;GTF2A1,2:0.0637786758805;ATF5_CREB3:0.0593132949651;MTF1:0.0574632543391;NFE2:0.057117968135;HAND1,2:0.0532469459852;EGR1..3:0.0203594117715;GFI1B:0.0179931080774;FOXA2:0.00223234351499;STAT5{A,B}:-0.011380806749;PATZ1:-0.0260405604825;GTF2I:-0.0331729812952;CREB1:-0.0512516697516;HNF1A:-0.0612878390466;NKX2-2,8:-0.0820964231097;POU6F1:-0.107694601726;GATA6:-0.120293918762;RXR{A,B,G}:-0.131065625793;CRX:-0.135429311843;HOX{A6,A7,B6,B7}:-0.136889801768;HIF1A:-0.137193502673;ZNF423:-0.174067617304;NKX3-2:-0.191530643186;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.199518440941;NKX3-1:-0.205964283592;ETS1,2:-0.212579561905;ALX1:-0.217997377508;MZF1:-0.225641100533;FOXD3:-0.231380245458;PDX1:-0.234764958105;IKZF1:-0.236261773321;HNF4A_NR2F1,2:-0.237954626086;TFCP2:-0.2434431589;FOXO1,3,4:-0.253073488046;PAX5:-0.255017298685;CUX2:-0.264357378407;IRF1,2:-0.277472337334;NR6A1:-0.288490737766;HBP1_HMGB_SSRP1_UBTF:-0.297499075009;HLF:-0.302992225495;DMAP1_NCOR{1,2}_SMARC:-0.308539969533;FOX{F1,F2,J1}:-0.312365482734;PAX4:-0.315092573502;SREBF1,2:-0.315880843033;PRDM1:-0.318227318324;HOX{A4,D4}:-0.326464599629;MEF2{A,B,C,D}:-0.333183034392;MYBL2:-0.341494503845;HMGA1,2:-0.359846097566;JUN:-0.363536854533;FOX{D1,D2}:-0.364221583799;HOX{A5,B5}:-0.364341102315;RFX2..5_RFXANK_RFXAP:-0.368766385859;LHX3,4:-0.380237951207;ZBTB6:-0.381875191112;AHR_ARNT_ARNT2:-0.392409447924;RUNX1..3:-0.396328892122;SPIB:-0.403106578792;SPI1:-0.405744981768;ZBTB16:-0.425770407107;PAX6:-0.461059685514;NFE2L1:-0.476326299455;SMAD1..7,9:-0.485269728614;NHLH1,2:-0.489071984229;TLX2:-0.503028890736;NR3C1:-0.506865118995;NR5A1,2:-0.51539508865;NFIL3:-0.521453095534;STAT2,4,6:-0.526728835121;REST:-0.547765131672;SPZ1:-0.549650134801;FOXL1:-0.55026941469;HMX1:-0.550910902751;AR:-0.5799768513;TOPORS:-0.585208016031;POU3F1..4:-0.593349956613;PAX2:-0.599960423171;TAL1_TCF{3,4,12}:-0.604436934868;GZF1:-0.605144089079;NFATC1..3:-0.612756996877;EBF1:-0.613542957249;FOXP3:-0.625591442971;LMO2:-0.64480163355;ESR1:-0.659187870429;IKZF2:-0.677158673686;PPARG:-0.683662165234;NFE2L2:-0.698558280149;SOX5:-0.702125212677;KLF4:-0.734192553173;CDX1,2,4:-0.735302441498;ALX4:-0.766330719234;UFEwm:-0.77855446001;ESRRA:-0.79095201918;EVI1:-0.806372406851;TGIF1:-0.844390252546;ZIC1..3:-0.856302381078;MYFfamily:-0.865119079183;DBP:-0.867006884442;AIRE:-0.874002774322;MAFB:-0.893531603159;ATF6:-0.898182747766;SRF:-0.923155770339;GLI1..3:-0.950131237553;TFAP4:-1.0088222092;NFIX:-1.02301171592;RXRA_VDR{dimer}:-1.07813998045;EP300:-1.09546676702;ZNF238:-1.1091698578;GATA4:-1.11148941024;GCM1,2:-1.35732600097;HES1:-1.42579523715;NANOG{mouse}:-1.49698847632 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10418-106C4;search_select_hide=table117:FF:10418-106C4 | |||
}} | }} | ||
Latest revision as of 14:00, 3 June 2020
| Name: | transitional-cell carcinoma cell line:5637 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10735 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10735
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10735
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0423 |
| 10 | 10 | 0.312 |
| 100 | 100 | 0.801 |
| 101 | 101 | 0.255 |
| 102 | 102 | 0.969 |
| 103 | 103 | 0.136 |
| 104 | 104 | 0.895 |
| 105 | 105 | 0.419 |
| 106 | 106 | 0.0492 |
| 107 | 107 | 0.363 |
| 108 | 108 | 0.698 |
| 109 | 109 | 0.3 |
| 11 | 11 | 0.0206 |
| 110 | 110 | 0.407 |
| 111 | 111 | 0.704 |
| 112 | 112 | 0.0196 |
| 113 | 113 | 0.699 |
| 114 | 114 | 0.0197 |
| 115 | 115 | 0.652 |
| 116 | 116 | 0.225 |
| 117 | 117 | 0.243 |
| 118 | 118 | 0.216 |
| 119 | 119 | 0.054 |
| 12 | 12 | 0.878 |
| 120 | 120 | 0.59 |
| 121 | 121 | 0.498 |
| 122 | 122 | 0.819 |
| 123 | 123 | 0.184 |
| 124 | 124 | 0.0803 |
| 125 | 125 | 0.824 |
| 126 | 126 | 0.561 |
| 127 | 127 | 0.449 |
| 128 | 128 | 0.0107 |
| 129 | 129 | 0.79 |
| 13 | 13 | 0.977 |
| 130 | 130 | 0.445 |
| 131 | 131 | 0.146 |
| 132 | 132 | 0.922 |
| 133 | 133 | 0.0168 |
| 134 | 134 | 0.27 |
| 135 | 135 | 0.0205 |
| 136 | 136 | 0.279 |
| 137 | 137 | 0.0719 |
| 138 | 138 | 0.141 |
| 139 | 139 | 0.0019 |
| 14 | 14 | 0.963 |
| 140 | 140 | 0.659 |
| 141 | 141 | 0.299 |
| 142 | 142 | 0.486 |
| 143 | 143 | 0.00634 |
| 144 | 144 | 0.0341 |
| 145 | 145 | 0.195 |
| 146 | 146 | 0.747 |
| 147 | 147 | 0.67 |
| 148 | 148 | 0.216 |
| 149 | 149 | 0.00546 |
| 15 | 15 | 0.165 |
| 150 | 150 | 0.87 |
| 151 | 151 | 0.452 |
| 152 | 152 | 0.162 |
| 153 | 153 | 0.576 |
| 154 | 154 | 0.774 |
| 155 | 155 | 0.651 |
| 156 | 156 | 0.911 |
| 157 | 157 | 0.769 |
| 158 | 158 | 0.83 |
| 159 | 159 | 0.332 |
| 16 | 16 | 0.271 |
| 160 | 160 | 0.253 |
| 161 | 161 | 0.755 |
| 162 | 162 | 0.571 |
| 163 | 163 | 0.568 |
| 164 | 164 | 0.124 |
| 165 | 165 | 0.961 |
| 166 | 166 | 0.403 |
| 167 | 167 | 0.644 |
| 168 | 168 | 0.966 |
| 169 | 169 | 0.0113 |
| 17 | 17 | 0.166 |
| 18 | 18 | 0.0687 |
| 19 | 19 | 0.0458 |
| 2 | 2 | 0.69 |
| 20 | 20 | 0.403 |
| 21 | 21 | 0.374 |
| 22 | 22 | 0.091 |
| 23 | 23 | 0.103 |
| 24 | 24 | 0.812 |
| 25 | 25 | 0.631 |
| 26 | 26 | 0.337 |
| 27 | 27 | 0.184 |
| 28 | 28 | 0.852 |
| 29 | 29 | 0.319 |
| 3 | 3 | 0.034 |
| 30 | 30 | 0.908 |
| 31 | 31 | 0.228 |
| 32 | 32 | 0.00121 |
| 33 | 33 | 0.752 |
| 34 | 34 | 0.418 |
| 35 | 35 | 0.0695 |
| 36 | 36 | 0.574 |
| 37 | 37 | 0.0609 |
| 38 | 38 | 0.417 |
| 39 | 39 | 0.848 |
| 4 | 4 | 0.576 |
| 40 | 40 | 0.845 |
| 41 | 41 | 0.201 |
| 42 | 42 | 0.252 |
| 43 | 43 | 0.0655 |
| 44 | 44 | 0.0472 |
| 45 | 45 | 0.82 |
| 46 | 46 | 0.0458 |
| 47 | 47 | 0.176 |
| 48 | 48 | 0.217 |
| 49 | 49 | 0.124 |
| 5 | 5 | 0.164 |
| 50 | 50 | 0.77 |
| 51 | 51 | 0.266 |
| 52 | 52 | 0.711 |
| 53 | 53 | 0.423 |
| 54 | 54 | 0.178 |
| 55 | 55 | 0.562 |
| 56 | 56 | 0.658 |
| 57 | 57 | 0.512 |
| 58 | 58 | 0.297 |
| 59 | 59 | 0.0235 |
| 6 | 6 | 0.508 |
| 60 | 60 | 0.211 |
| 61 | 61 | 0.602 |
| 62 | 62 | 0.048 |
| 63 | 63 | 0.427 |
| 64 | 64 | 0.258 |
| 65 | 65 | 0.103 |
| 66 | 66 | 0.272 |
| 67 | 67 | 0.375 |
| 68 | 68 | 0.0283 |
| 69 | 69 | 0.283 |
| 7 | 7 | 0.661 |
| 70 | 70 | 0.0146 |
| 71 | 71 | 0.172 |
| 72 | 72 | 0.191 |
| 73 | 73 | 0.0794 |
| 74 | 74 | 0.251 |
| 75 | 75 | 0.113 |
| 76 | 76 | 0.943 |
| 77 | 77 | 0.22 |
| 78 | 78 | 1 |
| 79 | 79 | 2.55589e-4 |
| 8 | 8 | 0.0344 |
| 80 | 80 | 0.29 |
| 81 | 81 | 0.0553 |
| 82 | 82 | 6.17331e-4 |
| 83 | 83 | 0.514 |
| 84 | 84 | 0.771 |
| 85 | 85 | 0.00139 |
| 86 | 86 | 0.167 |
| 87 | 87 | 0.915 |
| 88 | 88 | 0.614 |
| 89 | 89 | 0.0515 |
| 9 | 9 | 0.325 |
| 90 | 90 | 0.305 |
| 91 | 91 | 0.589 |
| 92 | 92 | 0.0621 |
| 93 | 93 | 0.874 |
| 94 | 94 | 0.00405 |
| 95 | 95 | 0.584 |
| 96 | 96 | 0.00717 |
| 97 | 97 | 0.535 |
| 98 | 98 | 0.0823 |
| 99 | 99 | 0.972 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10735
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103137 5637 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
1001319 (bladder cell)
1000600 (lower urinary tract cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001255 (urinary bladder)
0002100 (trunk)
0000483 (epithelium)
0004645 (urinary bladder urothelium)
0005910 (transitional epithelium)
0000479 (tissue)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0002323 (body cavity)
0000489 (cavitated compound organ)
0003350 (epithelium of mucosa)
0005177 (trunk region element)
0000486 (multilaminar epithelium)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001556 (lower urinary tract)
0001008 (renal system)
0001256 (wall of urinary bladder)
0001259 (mucosa of urinary bladder)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102868 (bladder transitional cell carcinoma cell line sample)
0100792 (urinary bladder cancer cell line sample)
0102869 (transitional cell carcinoma cell line sample)
0103137 (5637 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
