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(Created page with "{{f5samples |id=FF:11420-118F7 |name=Hair Follicle Dermal Papilla Cells, donor3 |sample_id=11420 |rna_tube_id=118F7 |rna_box=118 |rna_position=F7 |sample_cell_lot=N/A ...")
 
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{{f5samples
{{f5samples
|id=FF:11420-118F7
|DRA_sample_Accession=CAGE@SAMD00005852
|name=Hair Follicle Dermal Papilla Cells, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005852
|sample_id=11420
|accession_numbers=CAGE;DRX008298;DRR009170;DRZ000595;DRZ001980;DRZ011945;DRZ013330
|rna_tube_id=118F7
|accession_numbers_RNASeq=sRNA-Seq;DRX037051;DRR041417;DRZ007059
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0000412,UBERON:0002067,UBERON:0001992,UBERON:0002416
|rna_position=F7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002559,CL:0000346,CL:1000428
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1388.00000
|rna_catalog_number=CA602-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=36 years old adult
|sample_tissue=hair follicle
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=36
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=hair follicle, dermal papilla cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs12030,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10004,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000133,CL:0000134,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000255,CL:0000333,CL:0000346,CL:0000548,CL:0000723,CL:0002320,CL:0002321,CL:0002371,CL:0002559
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000412,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001003,UBERON:0001048,UBERON:0001062,UBERON:0001992,UBERON:0002050,UBERON:0002067,UBERON:0002073,UBERON:0002097,UBERON:0002199,UBERON:0002329,UBERON:0002384,UBERON:0002416,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003102,UBERON:0003104,UBERON:0004016,UBERON:0004120,UBERON:0004121,UBERON:0004290,UBERON:0004923,UBERON:0005086,UBERON:0005291,UBERON:0005423,UBERON:0007376,UBERON:0007383,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000072,FF:0000001,FF:0000071
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr20:55204351..55204377,+!p1@TFAP2C!2.11!161.62!TFAP2C;;chr7:19157248..19157268,-!p1@TWIST1!1.85!186.48!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.78!59.40!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!71.83!PRRX2;;chr6:34204921..34204939,+!p3@HMGA1!1.70!1403.45!HMGA1;;chr11:65686802..65686818,+!p6@DRAP1!1.54!58.02!DRAP1;;chr4:81118647..81118666,+!p1@PRDM8!1.53!42.82!PRDM8;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.15!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!146.42!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.48!33.15!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.01!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.33!55.25!OSR1;;chr2:119605214..119605230,-!p1@EN1!1.31!19.34!EN1;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.34!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!1.30!84.26!FOXD1;;chr5:321810..321877,+!p1@AHRR!1.27!55.25!AHRR;;chr11:65667846..65667868,-!p1@FOSL1!1.25!426.84!FOSL1;;chr12:53614115..53614154,-!p1@RARG!1.24!87.03!RARG;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.39!RUNX3;;chr3:147127177..147127194,+!p2@ZIC1!1.24!16.58!ZIC1;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.54!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!1.19!16.58!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.18!53.87!FOSL1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.18!15.19!GLIS1;;chr11:65687362..65687436,+!p3@DRAP1!1.16!60.78!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.72!CREB3L1;;chr6:34204973..34204990,+!p4@HMGA1!1.10!154.71!HMGA1;;chr3:157823517..157823562,-!p1@SHOX2!1.10!12.43!SHOX2;;chr4:4861385..4861398,+!p1@MSX1!1.08!33.15!MSX1;;chr11:44331576..44331650,-!p1@ALX4!1.08!11.05!ALX4;;chr5:2751762..2751784,-!p1@IRX2!1.08!11.05!IRX2;;chr1:170632250..170632277,+!p7@PRRX1!1.08!11.05!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!1.07!13.81!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!1.04!11.05!HOXB2;;chr2:102091566..102091581,-!p1@RFX8!1.03!9.67!RFX8;;chr5:174151612..174151633,+!p2@MSX2!1.03!9.67!MSX2;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.05!HOXB2;;chr2:239756671..239756732,+!p1@TWIST2!1.01!30.39!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.01!TBX2;;chr17:41622925..41622976,-!p3@ETV4!1.01!13.81!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.02!SNAI2;;chr19:31840130..31840160,-!p2@TSHZ3!0.99!13.81!TSHZ3;;chr11:46299186..46299195,+!p3@CREB3L1!0.98!9.67!CREB3L1;;chr6:34204672..34204692,+!p1@HMGA1!0.97!958.66!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.97!9.67!BNC1;;chr2:176994919..176994931,+!p2@HOXD8!0.97!8.29!HOXD8;;chr2:96012397..96012417,+!p3@KCNIP3!0.97!8.29!KCNIP3;;chr3:147111198..147111225,+!p4@ZIC1!0.97!8.29!ZIC1;;chr9:35732647..35732678,+!p2@CREB3!0.96!46.97!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.67!FOXF1;;chr10:77161133..77161176,-!p3@ZNF503!0.93!16.58!ZNF503;;chr20:42543506..42543549,+!p2@TOX2!0.92!17.96!TOX2;;chr5:72744445..72744466,-!p2@FOXD1!0.92!12.43!FOXD1;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.43!TWIST2;;chr5:134369905..134369972,-!p1@PITX1!0.91!11.05!PITX1;;chr17:46675420..46675465,-!p3@HOXB6!0.91!8.29!HOXB6;;chr16:31076332..31076388,-!p3@ZNF668!0.90!6.91!ZNF668;;chr5:3595977..3595999,+!p1@IRX1!0.90!6.91!IRX1;;chr7:35293685..35293718,-!p1@TBX20!0.90!6.91!TBX20;;chr1:170633058..170633084,+!p5@PRRX1!0.90!6.91!PRRX1;;chr2:114036488..114036504,-!p1@PAX8!0.90!6.91!PAX8;;chr2:176994408..176994492,+!p1@HOXD8!0.90!6.91!HOXD8;;chr3:25470156..25470227,+!p2@RARB!0.90!6.91!RARB;;chr14:24837368..24837401,+!p1@NFATC4!0.89!16.58!NFATC4;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.67!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.91!PRRX1;;chr11:65687158..65687216,+!p4@DRAP1!0.85!37.30!DRAP1;;chr12:53614155..53614187,-!p3@RARG!0.85!12.43!RARG;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.67!HOXB2;;chr17:46621101..46621143,-!p7@HOXB2!0.85!8.29!HOXB2;;chr1:149858461..149858479,+!p1@BOLA1!0.84!2498.86!BOLA1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.91!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!0.82!9.67!TFAP2A;;chr12:124873357..124873401,-!p1@NCOR2!0.81!69.07!NCOR2;;chr2:200322654..200322707,-!p2@SATB2!0.81!8.29!SATB2;;chr2:177001290..177001315,+!p1@HOXD3!0.81!5.53!HOXD3;;chr5:2751785..2751808,-!p2@IRX2!0.81!5.53!IRX2;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.53!IRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.81!5.53!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.81!5.53!RUNX3;;chr20:55205825..55205847,+!p2@TFAP2C!0.81!5.53!TFAP2C;;chr11:65668011..65668020,-!p3@FOSL1!0.81!5.53!FOSL1;;chr12:2986275..2986363,-!p1@FOXM1!0.80!58.02!FOXM1;;chr20:42543441..42543497,+!p1@TOX2!0.79!24.86!TOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.81!TWIST1;;chr17:38256799..38256815,-!p3@NR1D1!0.78!9.67!NR1D1;;chr17:59477275..59477286,+!p3@TBX2!0.78!6.91!TBX2;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.86!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.77!8.29!ETV4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.76!377.11!TAX1BP3;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.10!ETV4;;chr7:150946015..150946070,-!p3@SMARCD3!0.76!11.05!SMARCD3;;chr7:44143925..44143970,+!p1@AEBP1!0.75!114.65!AEBP1;;chr17:46622070..46622109,-!p1@HOXB2!0.75!11.05!HOXB2;;chr15:57511609..57511651,+!p2@TCF12!0.75!8.29!TCF12;;chr19:17356436..17356481,-!p3@NR2F6!0.75!8.29!NR2F6;;chr3:25469724..25469773,+!p1@RARB!0.75!6.91!RARB;;chr4:81104985..81105005,+!p4@PRDM8!0.74!5.53!PRDM8;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!6.91!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.73!6.91!ETV4;;chr6:10415276..10415341,-!p2@TFAP2A!0.73!5.53!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.08!SNAI2;;chr2:172967621..172967637,-!p1@DLX2!0.72!12.43!DLX2;;chr20:39317868..39317884,-!p1@MAFB!0.71!55.25!MAFB;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.20!TCF19;;chr8:72756667..72756736,-!p2@MSC!0.71!6.91!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.71!4.14!PITX1;;chr6:134210243..134210257,+!p1@TCF21!0.71!4.14!TCF21;;chr8:93074803..93074845,-!p1@RUNX1T1!0.71!4.14!RUNX1T1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.71!4.14!RUNX1T1;;chr19:50542543..50542548,+!p2@ZNF473!0.71!4.14!ZNF473;;chr1:170632439..170632465,+!p11@PRRX1!0.71!4.14!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.71!4.14!FOXS1;;chr15:80843472..80843480,+!p22@ARNT2!0.71!4.14!ARNT2;;chr15:80843484..80843499,+!p5@ARNT2!0.71!4.14!ARNT2;;chr16:54320322..54320343,-!p7@IRX3!0.71!4.14!IRX3;;chr16:86612320..86612394,+!p1@FOXL1!0.71!4.14!FOXL1;;chr19:31840278..31840300,-!p5@TSHZ3!0.71!4.14!TSHZ3;;chr2:119605253..119605264,-!p5@EN1!0.71!4.14!EN1;;chr2:176987463..176987479,+!p2@HOXD9!0.71!4.14!HOXD9;;chr2:66662510..66662521,+!p6@MEIS1!0.71!4.14!MEIS1;;chr3:157824001..157824078,-!p2@SHOX2!0.71!4.14!SHOX2;;chr4:299227..299272,-!p1@ZNF732!0.71!4.14!ZNF732;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.14!TBX3;;chrX:136648643..136648711,+!p2@ZIC3!0.71!4.14!ZIC3;;chr20:30193083..30193098,+!p1@ID1!0.70!372.96!ID1;;chr9:35732592..35732640,+!p1@CREB3!0.69!59.40!CREB3;;chr5:174151553..174151610,+!p1@MSX2!0.69!6.91!MSX2;;chr19:50431999..50432026,+!p4@ATF5!0.69!5.53!ATF5;;chr11:65687243..65687276,+!p8@DRAP1!0.69!5.53!DRAP1;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.53!ZNF503;;chr1:8938709..8938720,-!p3@ENO1!0.66!200.30!ENO1;;chr5:176738887..176738934,-!p1@MXD3!0.66!27.63!MXD3;;chr12:2986206..2986258,-!p2@FOXM1!0.66!24.86!FOXM1;;chr21:47063625..47063658,+!p1@PCBP3!0.66!17.96!PCBP3;;chr2:101591314..101591333,+!p2@NPAS2!0.66!4.14!NPAS2;;chr6:45296048..45296082,+!p1@RUNX2!0.66!4.14!RUNX2;;chr20:42295713..42295738,+!p2@MYBL2!0.65!23.48!MYBL2;;chr12:53856284..53856299,+!p3@PCBP2!0.65!11.05!PCBP2;;chr20:39946400..39946423,-!p3@ZHX3!0.65!6.91!ZHX3;;chr9:3526360..3526421,-!p5@RFX3!0.64!6.91!RFX3;;chr20:39946361..39946379,-!p2@ZHX3!0.63!11.05!ZHX3;;chr12:66218003..66218018,+!p9@HMGA2!0.63!4.14!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.77!TBX3;;chr2:208031542..208031595,-!p2@KLF7!0.62!26.25!KLF7;;chr2:28616358..28616380,+!p3@FOSL2!0.62!19.34!FOSL2;;chr19:46272462..46272562,-!p1@SIX5!0.62!15.19!SIX5;;chr7:42276787..42276815,-!p1@GLI3!0.62!9.67!GLI3;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.67!HOXB2;;chr5:72744562..72744573,-!p3@FOXD1!0.62!4.14!FOXD1;;chr1:8938766..8938774,-!p2@ENO1!0.61!256.93!ENO1;;chr12:124873852..124873881,-!p3@NCOR2!0.61!22.10!NCOR2;;chr3:150126759..150126784,+!p2@TSC22D2!0.61!16.58!TSC22D2;;chr14:73360799..73360817,-!p1@DPF3!0.61!12.43!DPF3;;chr19:926001..926046,+!p1@ARID3A!0.61!12.43!ARID3A;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.53!GLI2;;chr9:117150303..117150312,-!p3@AKNA!0.61!4.14!AKNA;;chr19:18392274..18392286,-!p3@JUND!0.60!23.48!JUND;;chr20:32274179..32274213,-!p1@E2F1!0.60!23.48!E2F1;;chr11:65686952..65686975,+!p5@DRAP1!0.60!19.34!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.59!58.02!MYBL2;;chr19:1592828..1592910,-!p2@MBD3!0.59!27.63!MBD3;;chr17:1958388..1958404,+!p1@HIC1!0.59!22.10!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.59!5.53!TBX2;;chr19:7584815..7584829,+!p2@ZNF358!0.59!4.14!ZNF358;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.77!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.58!17.96!ETV1;;chr5:3595934..3595957,+!p2@IRX1!0.58!2.76!IRX1;;chr6:27356595..27356611,+!p6@ZNF391!0.58!2.76!ZNF391;;chr8:72756380..72756427,-!p8@MSC!0.58!2.76!MSC;;chr10:64134045..64134083,+!p3@ZNF365!0.58!2.76!ZNF365;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.76!CREB3L1;;chr12:53613935..53613947,-!p8@RARG!0.58!2.76!RARG;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.76!HMGA2;;chrX:136648279..136648295,+!p1@ZIC3!0.58!2.76!ZIC3;;chr2:5832508..5832524,+!p1@SOX11!0.58!2.76!SOX11;;chr2:74730087..74730102,-!p4@LBX2!0.58!2.76!LBX2;;chr2:96012353..96012378,+!p4@KCNIP3!0.58!2.76!KCNIP3;;chr3:114343039..114343085,-!p8@ZBTB20!0.58!2.76!ZBTB20;;chr3:141121820..141121838,+!p9@ZBTB38!0.58!2.76!ZBTB38;;chr3:147111231..147111281,+!p3@ZIC1!0.58!2.76!ZIC1;;chr3:147114993..147115013,-!p5@ZIC4!0.58!2.76!ZIC4;;chr3:147139053..147139112,+!p5@ZIC1!0.58!2.76!ZIC1;;chr4:109089095..109089144,-!p6@LEF1!0.58!2.76!LEF1;;chr4:111558135..111558198,-!p2@PITX2!0.58!2.76!PITX2;;chr19:38183228..38183242,-!p4@ZNF781!0.58!2.76!ZNF781;;chr19:9420326..9420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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000346;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg38.nobarcode.ctss.bed.gz
|id=FF:11420-118F7
|is_a=EFO:0002091;;FF:0000071
|is_obsolete=
|library_id=CNhs12030
|library_id_phase_based=2:CNhs12030
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11420
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTTTCG.11420
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11420
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTTTCG.11420
|name=Hair Follicle Dermal Papilla Cells, donor3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12030,LSID837,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10004,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=118
|rna_catalog_number=CA602-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1388
|rna_od260/230=
|rna_od260/280=
|rna_position=F7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118F7
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.GTTTCG
|sample_age=36
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=hair follicle, dermal papilla cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=36 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.61339525912934e-211!GO:0005737;cytoplasm;8.22192340915296e-187!GO:0043226;organelle;4.66661548971295e-150!GO:0043229;intracellular organelle;1.15022391678037e-149!GO:0043231;intracellular membrane-bound organelle;5.67798234482553e-149!GO:0043227;membrane-bound organelle;8.34697745236353e-149!GO:0044422;organelle part;7.532063979667e-133!GO:0044444;cytoplasmic part;2.0841082660208e-131!GO:0044446;intracellular organelle part;2.0841082660208e-131!GO:0032991;macromolecular complex;6.10137863424425e-91!GO:0030529;ribonucleoprotein complex;4.05612752608782e-76!GO:0005515;protein binding;1.53231722928683e-75!GO:0005739;mitochondrion;5.64040294168296e-72!GO:0044237;cellular metabolic process;2.74844657524075e-68!GO:0044238;primary metabolic process;2.24765412387264e-67!GO:0043233;organelle lumen;7.51864716126517e-60!GO:0031974;membrane-enclosed lumen;7.51864716126517e-60!GO:0043170;macromolecule metabolic process;5.53515416600975e-58!GO:0031090;organelle membrane;2.45559471177279e-53!GO:0044428;nuclear part;1.15018169863446e-52!GO:0005840;ribosome;4.10112003748766e-52!GO:0003723;RNA binding;6.22986282811868e-50!GO:0044429;mitochondrial part;2.56392001702144e-48!GO:0043234;protein complex;7.32478649070333e-47!GO:0003735;structural constituent of ribosome;1.40343107534763e-46!GO:0006412;translation;2.15390884583491e-46!GO:0019538;protein metabolic process;3.51442810593248e-46!GO:0005634;nucleus;1.1751968381475e-45!GO:0009058;biosynthetic process;1.10168384869243e-44!GO:0016043;cellular component organization and biogenesis;7.44429185819806e-44!GO:0044249;cellular biosynthetic process;2.456640061605e-42!GO:0044260;cellular macromolecule metabolic process;1.46860396544877e-40!GO:0044267;cellular protein metabolic process;6.43707391824561e-40!GO:0031967;organelle envelope;1.84539892788627e-39!GO:0031975;envelope;4.11675541792919e-39!GO:0009059;macromolecule biosynthetic process;1.40805836723869e-38!GO:0033279;ribosomal subunit;2.1618918350217e-38!GO:0005829;cytosol;4.04222251796854e-38!GO:0006396;RNA processing;1.69915632401902e-35!GO:0015031;protein transport;7.26413412301013e-35!GO:0033036;macromolecule localization;4.08224905240631e-33!GO:0005740;mitochondrial envelope;1.9426921641342e-32!GO:0031981;nuclear lumen;3.05116765435169e-32!GO:0008104;protein localization;7.46571829133944e-32!GO:0045184;establishment of protein localization;9.47654566223987e-32!GO:0006996;organelle organization and biogenesis;6.04890822487276e-31!GO:0031966;mitochondrial membrane;6.48742611620558e-31!GO:0043228;non-membrane-bound organelle;1.39543491841272e-30!GO:0043232;intracellular non-membrane-bound organelle;1.39543491841272e-30!GO:0046907;intracellular transport;1.40462346826849e-30!GO:0019866;organelle inner membrane;1.28075071360948e-29!GO:0065003;macromolecular complex assembly;3.14966904236467e-29!GO:0005743;mitochondrial inner membrane;3.05079765995876e-28!GO:0043283;biopolymer metabolic process;1.13166806003584e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.34788506259411e-27!GO:0016071;mRNA metabolic process;7.34793613618212e-27!GO:0022607;cellular component assembly;6.80099690998991e-26!GO:0006886;intracellular protein transport;3.07338681330422e-25!GO:0008380;RNA splicing;8.45200297701476e-24!GO:0006397;mRNA processing;1.30946978900193e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.82385835906948e-22!GO:0006119;oxidative phosphorylation;3.11634862162051e-22!GO:0010467;gene expression;4.57011145926175e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.3695987800808e-22!GO:0044455;mitochondrial membrane part;1.70643638498377e-21!GO:0006259;DNA metabolic process;2.6832181988979e-21!GO:0044445;cytosolic part;5.74018603041055e-21!GO:0015934;large ribosomal subunit;3.06959326789102e-20!GO:0007049;cell cycle;3.70548590470954e-20!GO:0031980;mitochondrial lumen;3.94270855676355e-20!GO:0005759;mitochondrial matrix;3.94270855676355e-20!GO:0012505;endomembrane system;4.05136151914563e-20!GO:0051649;establishment of cellular localization;1.52196366780144e-19!GO:0051641;cellular localization;2.07588402891922e-19!GO:0015935;small ribosomal subunit;3.30079233940584e-19!GO:0051186;cofactor metabolic process;1.5685357042716e-18!GO:0005654;nucleoplasm;1.61176624753285e-18!GO:0000166;nucleotide binding;2.16861638017188e-18!GO:0048770;pigment granule;3.06642427106376e-18!GO:0042470;melanosome;3.06642427106376e-18!GO:0016462;pyrophosphatase activity;3.31262616168716e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.60704603560057e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;5.33063000583711e-18!GO:0005783;endoplasmic reticulum;7.49604863233e-18!GO:0005681;spliceosome;7.5273084412695e-18!GO:0017111;nucleoside-triphosphatase activity;1.27305033678008e-17!GO:0005746;mitochondrial respiratory chain;1.29849297881349e-17!GO:0044432;endoplasmic reticulum part;5.47294755792707e-17!GO:0022402;cell cycle process;9.16749360905753e-17!GO:0000278;mitotic cell cycle;1.84458918842706e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.65677077268013e-16!GO:0008134;transcription factor binding;1.00112847153946e-15!GO:0044451;nucleoplasm part;2.49062395020769e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.77960607208343e-15!GO:0016874;ligase activity;5.5552994461075e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.1717358173811e-15!GO:0003954;NADH dehydrogenase activity;9.1717358173811e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.1717358173811e-15!GO:0006457;protein folding;9.32682746024526e-15!GO:0006732;coenzyme metabolic process;1.95205903318082e-14!GO:0005761;mitochondrial ribosome;2.66670152777507e-14!GO:0000313;organellar ribosome;2.66670152777507e-14!GO:0005794;Golgi apparatus;2.66670152777507e-14!GO:0017076;purine nucleotide binding;3.35731556165052e-14!GO:0005730;nucleolus;4.87615878277796e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.58125157219124e-14!GO:0032553;ribonucleotide binding;6.63027607858848e-14!GO:0032555;purine ribonucleotide binding;6.63027607858848e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.18445361288749e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.03166257810078e-13!GO:0044248;cellular catabolic process;3.82807875761249e-13!GO:0006605;protein targeting;4.16630643808973e-13!GO:0043285;biopolymer catabolic process;4.2379903826973e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.4846506681023e-13!GO:0045271;respiratory chain complex I;6.4846506681023e-13!GO:0005747;mitochondrial respiratory chain complex I;6.4846506681023e-13!GO:0006512;ubiquitin cycle;6.91825490172212e-13!GO:0009055;electron carrier activity;8.72585368533405e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.00547112651216e-12!GO:0042773;ATP synthesis coupled electron transport;1.00547112651216e-12!GO:0005524;ATP binding;1.20353184457067e-12!GO:0009057;macromolecule catabolic process;1.48227215630593e-12!GO:0044265;cellular macromolecule catabolic process;1.66304241933044e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.70420397937539e-12!GO:0022618;protein-RNA complex assembly;1.79983897902286e-12!GO:0030554;adenyl nucleotide binding;1.90365850163703e-12!GO:0051082;unfolded protein binding;2.03753607334022e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.19482931839183e-12!GO:0032559;adenyl ribonucleotide binding;2.56173792442206e-12!GO:0005789;endoplasmic reticulum membrane;3.66504978847659e-12!GO:0022403;cell cycle phase;3.66504978847659e-12!GO:0007067;mitosis;6.60351173210478e-12!GO:0000087;M phase of mitotic cell cycle;7.5718696621809e-12!GO:0043412;biopolymer modification;1.19380456971427e-11!GO:0030163;protein catabolic process;1.41568027999997e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.81567409637378e-11!GO:0048193;Golgi vesicle transport;1.83753470996263e-11!GO:0016491;oxidoreductase activity;1.85286497588154e-11!GO:0044257;cellular protein catabolic process;2.55379990794893e-11!GO:0019941;modification-dependent protein catabolic process;2.71793232413449e-11!GO:0043632;modification-dependent macromolecule catabolic process;2.71793232413449e-11!GO:0009259;ribonucleotide metabolic process;3.68363899944208e-11!GO:0012501;programmed cell death;4.24396360888776e-11!GO:0003712;transcription cofactor activity;4.34110155850057e-11!GO:0006511;ubiquitin-dependent protein catabolic process;5.11367601719876e-11!GO:0008135;translation factor activity, nucleic acid binding;5.41543866700296e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;8.93855553243484e-11!GO:0000375;RNA splicing, via transesterification reactions;8.93855553243484e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.93855553243484e-11!GO:0006915;apoptosis;9.36774553514508e-11!GO:0006464;protein modification process;1.03121126816063e-10!GO:0005793;ER-Golgi intermediate compartment;1.14607814160783e-10!GO:0016192;vesicle-mediated transport;1.60308969932705e-10!GO:0006163;purine nucleotide metabolic process;1.73566769407489e-10!GO:0051276;chromosome organization and biogenesis;2.51386898651738e-10!GO:0009150;purine ribonucleotide metabolic process;2.64165513494135e-10!GO:0008219;cell death;2.87538508903301e-10!GO:0016265;death;2.87538508903301e-10!GO:0042254;ribosome biogenesis and assembly;3.04658583199664e-10!GO:0051726;regulation of cell cycle;3.12983965448966e-10!GO:0009260;ribonucleotide biosynthetic process;3.28906799356066e-10!GO:0065004;protein-DNA complex assembly;3.69673197295812e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;4.70819812191473e-10!GO:0000074;regulation of progression through cell cycle;4.92104570882866e-10!GO:0006164;purine nucleotide biosynthetic process;5.02925528559893e-10!GO:0005694;chromosome;5.20039848144005e-10!GO:0042623;ATPase activity, coupled;5.70398376146537e-10!GO:0044427;chromosomal part;5.88326324083739e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.78066332764433e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.1268353540202e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.520934753508e-10!GO:0006913;nucleocytoplasmic transport;1.03539991586589e-09!GO:0051188;cofactor biosynthetic process;1.25382767497339e-09!GO:0051169;nuclear transport;1.29931282943077e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.33194996565287e-09!GO:0016887;ATPase activity;1.4848764771281e-09!GO:0006334;nucleosome assembly;1.5062535907245e-09!GO:0006323;DNA packaging;1.68326195780718e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.40878582614867e-09!GO:0051301;cell division;2.75799817374858e-09!GO:0006974;response to DNA damage stimulus;2.80406439771879e-09!GO:0000279;M phase;3.60730273924069e-09!GO:0006399;tRNA metabolic process;3.80837365628263e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.02937160565872e-09!GO:0044453;nuclear membrane part;5.03698518683826e-09!GO:0009141;nucleoside triphosphate metabolic process;5.15850082289822e-09!GO:0031497;chromatin assembly;7.20572278526137e-09!GO:0003743;translation initiation factor activity;7.56911018167614e-09!GO:0006091;generation of precursor metabolites and energy;8.20699777182559e-09!GO:0015986;ATP synthesis coupled proton transport;8.65310006592249e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.65310006592249e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.65310006592249e-09!GO:0009144;purine nucleoside triphosphate metabolic process;8.65310006592249e-09!GO:0043687;post-translational protein modification;9.88646553968448e-09!GO:0003676;nucleic acid binding;1.03048082790359e-08!GO:0006333;chromatin assembly or disassembly;1.13656966746865e-08!GO:0006461;protein complex assembly;1.17998458117252e-08!GO:0009117;nucleotide metabolic process;1.47096231274141e-08!GO:0005635;nuclear envelope;1.959154354916e-08!GO:0017038;protein import;2.09476463840734e-08!GO:0009056;catabolic process;2.26250608068297e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.40746147187861e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.40746147187861e-08!GO:0000785;chromatin;2.79231217788485e-08!GO:0046034;ATP metabolic process;2.79231217788485e-08!GO:0019829;cation-transporting ATPase activity;2.79231217788485e-08!GO:0031965;nuclear membrane;3.00918475969357e-08!GO:0009060;aerobic respiration;3.18529437558681e-08!GO:0008639;small protein conjugating enzyme activity;3.2976539290118e-08!GO:0006260;DNA replication;3.51949010830633e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.03348209316288e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.03348209316288e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.03348209316288e-08!GO:0045333;cellular respiration;4.60473163058327e-08!GO:0004842;ubiquitin-protein ligase activity;4.66332084512207e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.21551128599861e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.21551128599861e-08!GO:0008565;protein transporter activity;5.5434944504545e-08!GO:0005839;proteasome core complex (sensu Eukaryota);5.544015382701e-08!GO:0006413;translational initiation;5.89253895684295e-08!GO:0048523;negative regulation of cellular process;8.94086266899715e-08!GO:0065002;intracellular protein transport across a membrane;9.78837400839686e-08!GO:0009108;coenzyme biosynthetic process;1.06031245128294e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.06031245128294e-07!GO:0006446;regulation of translational initiation;1.07638588646591e-07!GO:0043038;amino acid activation;1.1927235469618e-07!GO:0006418;tRNA aminoacylation for protein translation;1.1927235469618e-07!GO:0043039;tRNA aminoacylation;1.1927235469618e-07!GO:0006754;ATP biosynthetic process;1.35294642590336e-07!GO:0006753;nucleoside phosphate metabolic process;1.35294642590336e-07!GO:0030120;vesicle coat;1.35524810388116e-07!GO:0030662;coated vesicle membrane;1.35524810388116e-07!GO:0019787;small conjugating protein ligase activity;1.4893036389126e-07!GO:0007005;mitochondrion organization and biogenesis;1.56700163850239e-07!GO:0009719;response to endogenous stimulus;1.79498945107436e-07!GO:0005643;nuclear pore;2.00862470766598e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.19870134414336e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.38369908249855e-07!GO:0006281;DNA repair;2.76441585993558e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.77155454119476e-07!GO:0016740;transferase activity;2.9856608165583e-07!GO:0048475;coated membrane;2.99764195194575e-07!GO:0030117;membrane coat;2.99764195194575e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.15976579529609e-07!GO:0006364;rRNA processing;3.8995141381092e-07!GO:0043067;regulation of programmed cell death;4.90822785954632e-07!GO:0004298;threonine endopeptidase activity;5.14166365247188e-07!GO:0042981;regulation of apoptosis;5.16390591967755e-07!GO:0016787;hydrolase activity;5.20846562711107e-07!GO:0005788;endoplasmic reticulum lumen;5.92559018174833e-07!GO:0003924;GTPase activity;5.92559018174833e-07!GO:0006752;group transfer coenzyme metabolic process;6.0323015417721e-07!GO:0046930;pore complex;6.89807508659838e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.96104657682263e-07!GO:0005768;endosome;7.06795521046244e-07!GO:0016604;nuclear body;7.37743872150691e-07!GO:0006366;transcription from RNA polymerase II promoter;8.34415105813196e-07!GO:0044431;Golgi apparatus part;9.4235794594361e-07!GO:0016881;acid-amino acid ligase activity;1.07681320367721e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.1500249236016e-06!GO:0016072;rRNA metabolic process;1.1758270192467e-06!GO:0048519;negative regulation of biological process;1.1758270192467e-06!GO:0006793;phosphorus metabolic process;1.1758270192467e-06!GO:0006796;phosphate metabolic process;1.1758270192467e-06!GO:0016779;nucleotidyltransferase activity;1.17629518689483e-06!GO:0006099;tricarboxylic acid cycle;1.22655496391657e-06!GO:0046356;acetyl-CoA catabolic process;1.22655496391657e-06!GO:0045259;proton-transporting ATP synthase complex;1.45528375137918e-06!GO:0051187;cofactor catabolic process;1.60424516183076e-06!GO:0006084;acetyl-CoA metabolic process;2.19810230098715e-06!GO:0000786;nucleosome;2.79849141699038e-06!GO:0015630;microtubule cytoskeleton;3.0773010273357e-06!GO:0051246;regulation of protein metabolic process;3.36221737528632e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.56974689113024e-06!GO:0016070;RNA metabolic process;3.78679105430251e-06!GO:0005762;mitochondrial large ribosomal subunit;4.04279347386023e-06!GO:0000315;organellar large ribosomal subunit;4.04279347386023e-06!GO:0016023;cytoplasmic membrane-bound vesicle;5.48366489472092e-06!GO:0009109;coenzyme catabolic process;5.56655885810918e-06!GO:0031252;leading edge;5.70365983780734e-06!GO:0031988;membrane-bound vesicle;6.06602326956098e-06!GO:0003714;transcription corepressor activity;7.21215387631415e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.4501666439564e-06!GO:0043069;negative regulation of programmed cell death;8.60680442288481e-06!GO:0005667;transcription factor complex;9.74094184118581e-06!GO:0051329;interphase of mitotic cell cycle;9.99923173138896e-06!GO:0008361;regulation of cell size;1.05885519084922e-05!GO:0032446;protein modification by small protein conjugation;1.15589339919091e-05!GO:0016567;protein ubiquitination;1.31619572409056e-05!GO:0003697;single-stranded DNA binding;1.31619572409056e-05!GO:0000139;Golgi membrane;1.41239054151528e-05!GO:0043066;negative regulation of apoptosis;1.47178594261462e-05!GO:0009165;nucleotide biosynthetic process;1.51254350799516e-05!GO:0016310;phosphorylation;1.55802695664056e-05!GO:0016049;cell growth;1.57110933875041e-05!GO:0003713;transcription coactivator activity;1.69808964466714e-05!GO:0051325;interphase;1.74627897960412e-05!GO:0004386;helicase activity;1.77324529910605e-05!GO:0051170;nuclear import;1.82864409925217e-05!GO:0006916;anti-apoptosis;2.1233236138637e-05!GO:0044440;endosomal part;2.36272586269795e-05!GO:0010008;endosome membrane;2.36272586269795e-05!GO:0005798;Golgi-associated vesicle;2.36272586269795e-05!GO:0016563;transcription activator activity;2.45900594046493e-05!GO:0045786;negative regulation of progression through cell cycle;2.69211376238746e-05!GO:0006606;protein import into nucleus;3.06760150141949e-05!GO:0000245;spliceosome assembly;3.4506979574266e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.6242218959928e-05!GO:0008026;ATP-dependent helicase activity;3.68169529261297e-05!GO:0048522;positive regulation of cellular process;3.69735990574632e-05!GO:0001558;regulation of cell growth;3.86284581278426e-05!GO:0051789;response to protein stimulus;4.50507080419954e-05!GO:0006986;response to unfolded protein;4.50507080419954e-05!GO:0005773;vacuole;5.17661574943015e-05!GO:0000151;ubiquitin ligase complex;5.29307741990562e-05!GO:0030867;rough endoplasmic reticulum membrane;5.59946183393349e-05!GO:0005819;spindle;5.78916343755265e-05!GO:0016607;nuclear speck;5.98488834436044e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.20067627801368e-05!GO:0015399;primary active transmembrane transporter activity;6.20067627801368e-05!GO:0005770;late endosome;6.4524218706501e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.63995532030149e-05!GO:0003899;DNA-directed RNA polymerase activity;6.65992277577743e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.93927507282036e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.64100671255884e-05!GO:0005048;signal sequence binding;7.87218188732663e-05!GO:0031982;vesicle;8.51611868666857e-05!GO:0007010;cytoskeleton organization and biogenesis;9.2461528273932e-05!GO:0016853;isomerase activity;9.25431914080603e-05!GO:0031410;cytoplasmic vesicle;9.92463869729208e-05!GO:0019867;outer membrane;0.000109453467421493!GO:0030036;actin cytoskeleton organization and biogenesis;0.000113985611843214!GO:0005905;coated pit;0.000125548415757375!GO:0005813;centrosome;0.000144674781907221!GO:0006082;organic acid metabolic process;0.000147305300253191!GO:0043566;structure-specific DNA binding;0.000147305300253191!GO:0019752;carboxylic acid metabolic process;0.000168228247554196!GO:0031968;organelle outer membrane;0.000175476809091736!GO:0030133;transport vesicle;0.000177780767310518!GO:0016564;transcription repressor activity;0.00018091638650542!GO:0019899;enzyme binding;0.000199235109671213!GO:0006613;cotranslational protein targeting to membrane;0.000207988668696503!GO:0005815;microtubule organizing center;0.000217015425233903!GO:0016568;chromatin modification;0.000240546374270256!GO:0000314;organellar small ribosomal subunit;0.00025939467620602!GO:0005763;mitochondrial small ribosomal subunit;0.00025939467620602!GO:0008654;phospholipid biosynthetic process;0.000265105828587669!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000267529210063286!GO:0051427;hormone receptor binding;0.000296446872039315!GO:0044262;cellular carbohydrate metabolic process;0.000296446872039315!GO:0050794;regulation of cellular process;0.000296446872039315!GO:0045454;cell redox homeostasis;0.000300335165709774!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00034427826568342!GO:0000323;lytic vacuole;0.000348128844916907!GO:0005764;lysosome;0.000348128844916907!GO:0065009;regulation of a molecular function;0.000373259159843942!GO:0005741;mitochondrial outer membrane;0.000417419619023839!GO:0003724;RNA helicase activity;0.000474028075171431!GO:0007243;protein kinase cascade;0.000475215897390476!GO:0005769;early endosome;0.000485122349526899!GO:0050657;nucleic acid transport;0.000485658772744071!GO:0051236;establishment of RNA localization;0.000485658772744071!GO:0050658;RNA transport;0.000485658772744071!GO:0043623;cellular protein complex assembly;0.000510154402612616!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000510782920167715!GO:0043492;ATPase activity, coupled to movement of substances;0.000520054598432653!GO:0006403;RNA localization;0.000544608837671075!GO:0006839;mitochondrial transport;0.000580608876316818!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00059945824423716!GO:0035257;nuclear hormone receptor binding;0.000605822417912595!GO:0031324;negative regulation of cellular metabolic process;0.000619087815236499!GO:0006118;electron transport;0.000619087815236499!GO:0030029;actin filament-based process;0.000662162878109528!GO:0005885;Arp2/3 protein complex;0.000666518098287263!GO:0015992;proton transport;0.000718220285720285!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000735026201866303!GO:0009967;positive regulation of signal transduction;0.000773488752904944!GO:0019843;rRNA binding;0.000804359105861904!GO:0008047;enzyme activator activity;0.000811923195998933!GO:0005525;GTP binding;0.000812801273034826!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000820145621133273!GO:0022890;inorganic cation transmembrane transporter activity;0.000919288410608146!GO:0043681;protein import into mitochondrion;0.000929275581258685!GO:0006818;hydrogen transport;0.000948288218204028!GO:0008610;lipid biosynthetic process;0.00115391936138925!GO:0051920;peroxiredoxin activity;0.00118894531256204!GO:0007050;cell cycle arrest;0.00128503852705211!GO:0048518;positive regulation of biological process;0.00136596506252853!GO:0043284;biopolymer biosynthetic process;0.00137993714578381!GO:0008250;oligosaccharyl transferase complex;0.00138746559915916!GO:0016126;sterol biosynthetic process;0.00139131636566363!GO:0043021;ribonucleoprotein binding;0.00153883099227343!GO:0030663;COPI coated vesicle membrane;0.00156087528516725!GO:0030126;COPI vesicle coat;0.00156087528516725!GO:0004576;oligosaccharyl transferase activity;0.00157272668090084!GO:0008092;cytoskeletal protein binding;0.00158375925453077!GO:0051168;nuclear export;0.00159531006379826!GO:0006612;protein targeting to membrane;0.00160308308060918!GO:0030132;clathrin coat of coated pit;0.00160829270575999!GO:0051252;regulation of RNA metabolic process;0.001718754466202!GO:0040008;regulation of growth;0.00173114720204056!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00179381040285696!GO:0030137;COPI-coated vesicle;0.0018146073867366!GO:0006261;DNA-dependent DNA replication;0.00183202085849362!GO:0007006;mitochondrial membrane organization and biogenesis;0.00195004568520778!GO:0046474;glycerophospholipid biosynthetic process;0.00206916899633737!GO:0030176;integral to endoplasmic reticulum membrane;0.00209232523858266!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00221040295339453!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00221040295339453!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00221040295339453!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00224824663912883!GO:0015002;heme-copper terminal oxidase activity;0.00224824663912883!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00224824663912883!GO:0004129;cytochrome-c oxidase activity;0.00224824663912883!GO:0048468;cell development;0.00228874204917506!GO:0030658;transport vesicle membrane;0.00245925868666321!GO:0016044;membrane organization and biogenesis;0.00254710482497502!GO:0050662;coenzyme binding;0.00257060911150369!GO:0006979;response to oxidative stress;0.00258864168234165!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00276788223520316!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00276788223520316!GO:0005791;rough endoplasmic reticulum;0.00283413236531958!GO:0042802;identical protein binding;0.00294173085762254!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00294422331776929!GO:0005774;vacuolar membrane;0.00304396996397572!GO:0007088;regulation of mitosis;0.00306757785509807!GO:0003684;damaged DNA binding;0.00306757785509807!GO:0008632;apoptotic program;0.00310792335865044!GO:0006414;translational elongation;0.00313650639539669!GO:0007051;spindle organization and biogenesis;0.00321495390264601!GO:0030118;clathrin coat;0.00323520206012137!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00330774722344821!GO:0018196;peptidyl-asparagine modification;0.00372163478530388!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00372163478530388!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00376844076227475!GO:0045792;negative regulation of cell size;0.00377018424467813!GO:0008186;RNA-dependent ATPase activity;0.00380314549755077!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00383141689670983!GO:0031902;late endosome membrane;0.00390157876163378!GO:0043488;regulation of mRNA stability;0.00394173898120353!GO:0043487;regulation of RNA stability;0.00394173898120353!GO:0016859;cis-trans isomerase activity;0.00398483396085068!GO:0008033;tRNA processing;0.00400571915687107!GO:0046483;heterocycle metabolic process;0.00403875902886469!GO:0006626;protein targeting to mitochondrion;0.00409074790994079!GO:0017166;vinculin binding;0.00409101752514874!GO:0006520;amino acid metabolic process;0.00423847783048316!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00440868738855032!GO:0032561;guanyl ribonucleotide binding;0.00442010489709407!GO:0019001;guanyl nucleotide binding;0.00442010489709407!GO:0048487;beta-tubulin binding;0.00442622930215194!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0045019427927869!GO:0005684;U2-dependent spliceosome;0.00458771055090531!GO:0030308;negative regulation of cell growth;0.00467953819162992!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00474596024291891!GO:0046519;sphingoid metabolic process;0.00483179203463836!GO:0008139;nuclear localization sequence binding;0.00489251786543809!GO:0009892;negative regulation of metabolic process;0.00530926228304264!GO:0003746;translation elongation factor activity;0.00545448179619097!GO:0005874;microtubule;0.00555567555021119!GO:0030660;Golgi-associated vesicle membrane;0.00605295151088274!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00611687567248106!GO:0008094;DNA-dependent ATPase activity;0.00614425922207966!GO:0005096;GTPase activator activity;0.00626631221207649!GO:0050790;regulation of catalytic activity;0.00628296992532434!GO:0051028;mRNA transport;0.00648682830905801!GO:0030027;lamellipodium;0.00659549743140619!GO:0044437;vacuolar part;0.00661352825394152!GO:0006778;porphyrin metabolic process;0.00670478541953479!GO:0033013;tetrapyrrole metabolic process;0.00670478541953479!GO:0006695;cholesterol biosynthetic process;0.00677714941016521!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00706859167052205!GO:0008022;protein C-terminus binding;0.00717461380690861!GO:0045941;positive regulation of transcription;0.00720608803124062!GO:0000082;G1/S transition of mitotic cell cycle;0.00726640557384953!GO:0044452;nucleolar part;0.00730240601026436!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00822942773071714!GO:0005765;lysosomal membrane;0.00829222473228718!GO:0045936;negative regulation of phosphate metabolic process;0.00829222473228718!GO:0046467;membrane lipid biosynthetic process;0.00835515910928468!GO:0030134;ER to Golgi transport vesicle;0.00846090092082832!GO:0000059;protein import into nucleus, docking;0.0084677315595567!GO:0001726;ruffle;0.00863322970491564!GO:0030880;RNA polymerase complex;0.00880388580693378!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0088169345747022!GO:0030127;COPII vesicle coat;0.00899435371560505!GO:0012507;ER to Golgi transport vesicle membrane;0.00899435371560505!GO:0004004;ATP-dependent RNA helicase activity;0.00901221088624982!GO:0050789;regulation of biological process;0.00916267637066559!GO:0048037;cofactor binding;0.00934115695705581!GO:0031072;heat shock protein binding;0.00967501400386613!GO:0046426;negative regulation of JAK-STAT cascade;0.00975523108500207!GO:0000775;chromosome, pericentric region;0.00986315486282578!GO:0006595;polyamine metabolic process;0.0104341096984155!GO:0006611;protein export from nucleus;0.010490046734431!GO:0006672;ceramide metabolic process;0.0108473714438701!GO:0019206;nucleoside kinase activity;0.010959307637831!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0111410558766879!GO:0007346;regulation of progression through mitotic cell cycle;0.0111856998529591!GO:0048471;perinuclear region of cytoplasm;0.0118231092646015!GO:0030659;cytoplasmic vesicle membrane;0.0118829995139077!GO:0005862;muscle thin filament tropomyosin;0.0122107553757639!GO:0045893;positive regulation of transcription, DNA-dependent;0.0123297128324118!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0137503587809996!GO:0006740;NADPH regeneration;0.0137581018185107!GO:0006098;pentose-phosphate shunt;0.0137581018185107!GO:0006289;nucleotide-excision repair;0.0137762121316329!GO:0031301;integral to organelle membrane;0.0137762121316329!GO:0016363;nuclear matrix;0.0137839702523997!GO:0046489;phosphoinositide biosynthetic process;0.0138294916804451!GO:0004177;aminopeptidase activity;0.0143414322754806!GO:0004527;exonuclease activity;0.0144224037867102!GO:0051287;NAD binding;0.014453301126667!GO:0000096;sulfur amino acid metabolic process;0.0151678911714115!GO:0007264;small GTPase mediated signal transduction;0.0152335952464946!GO:0042168;heme metabolic process;0.0153242299422782!GO:0006790;sulfur metabolic process;0.0155804105477141!GO:0045926;negative regulation of growth;0.0157084824120923!GO:0000075;cell cycle checkpoint;0.0164176902432062!GO:0051087;chaperone binding;0.0164651439105919!GO:0031529;ruffle organization and biogenesis;0.0164651439105919!GO:0005657;replication fork;0.0165457370209522!GO:0006509;membrane protein ectodomain proteolysis;0.0165457370209522!GO:0033619;membrane protein proteolysis;0.0165457370209522!GO:0032508;DNA duplex unwinding;0.0171010674334834!GO:0032392;DNA geometric change;0.0171010674334834!GO:0005832;chaperonin-containing T-complex;0.0175717321917986!GO:0030125;clathrin vesicle coat;0.0177256319227801!GO:0030665;clathrin coated vesicle membrane;0.0177256319227801!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0178880392189535!GO:0000428;DNA-directed RNA polymerase complex;0.0178880392189535!GO:0035258;steroid hormone receptor binding;0.0178880392189535!GO:0044433;cytoplasmic vesicle part;0.0179286363365674!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0181351318189159!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0184918010896922!GO:0006733;oxidoreduction coenzyme metabolic process;0.0190091816121563!GO:0015631;tubulin binding;0.0194942284785839!GO:0003678;DNA helicase activity;0.0198164764823371!GO:0005869;dynactin complex;0.0199286013582963!GO:0051540;metal cluster binding;0.020477907938627!GO:0051536;iron-sulfur cluster binding;0.020477907938627!GO:0030119;AP-type membrane coat adaptor complex;0.0205822033326245!GO:0006383;transcription from RNA polymerase III promoter;0.0207909926154568!GO:0006891;intra-Golgi vesicle-mediated transport;0.0210736463901998!GO:0003711;transcription elongation regulator activity;0.0212463945675322!GO:0031124;mRNA 3'-end processing;0.0214947402716097!GO:0008538;proteasome activator activity;0.0214947402716097!GO:0042326;negative regulation of phosphorylation;0.0216244909349123!GO:0008243;plasminogen activator activity;0.0216440182579541!GO:0006220;pyrimidine nucleotide metabolic process;0.0217035789151456!GO:0006354;RNA elongation;0.0218873024335706!GO:0031272;regulation of pseudopodium formation;0.0221061733157638!GO:0031269;pseudopodium formation;0.0221061733157638!GO:0031344;regulation of cell projection organization and biogenesis;0.0221061733157638!GO:0031268;pseudopodium organization and biogenesis;0.0221061733157638!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0221061733157638!GO:0031274;positive regulation of pseudopodium formation;0.0221061733157638!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0221061733157638!GO:0016481;negative regulation of transcription;0.0224543524324417!GO:0004674;protein serine/threonine kinase activity;0.0232405930276604!GO:0006779;porphyrin biosynthetic process;0.0232407503547719!GO:0033014;tetrapyrrole biosynthetic process;0.0232407503547719!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0235508548224726!GO:0000049;tRNA binding;0.0237084603709319!GO:0015036;disulfide oxidoreductase activity;0.0239679279078896!GO:0043433;negative regulation of transcription factor activity;0.0250838029617504!GO:0006892;post-Golgi vesicle-mediated transport;0.0257678466168649!GO:0030041;actin filament polymerization;0.0261971508642769!GO:0009262;deoxyribonucleotide metabolic process;0.0267958658449172!GO:0006650;glycerophospholipid metabolic process;0.0269656454495599!GO:0006897;endocytosis;0.0271047101201752!GO:0010324;membrane invagination;0.0271047101201752!GO:0016408;C-acyltransferase activity;0.0271827506130307!GO:0048500;signal recognition particle;0.0272209562858584!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0273550281257189!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0273550281257189!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0273550281257189!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0276865422130739!GO:0016301;kinase activity;0.027711297303344!GO:0031418;L-ascorbic acid binding;0.0285435149796834!GO:0005092;GDP-dissociation inhibitor activity;0.0288726779289651!GO:0009124;nucleoside monophosphate biosynthetic process;0.028958265484476!GO:0009123;nucleoside monophosphate metabolic process;0.028958265484476!GO:0000339;RNA cap binding;0.0291851988114061!GO:0016791;phosphoric monoester hydrolase activity;0.0297799783615027!GO:0044438;microbody part;0.0297934567986701!GO:0044439;peroxisomal part;0.0297934567986701!GO:0003690;double-stranded DNA binding;0.0303823786110533!GO:0043065;positive regulation of apoptosis;0.0303823786110533!GO:0030521;androgen receptor signaling pathway;0.0304361366160079!GO:0030131;clathrin adaptor complex;0.0304593705510638!GO:0006950;response to stress;0.0305113445239367!GO:0007033;vacuole organization and biogenesis;0.0305520758662833!GO:0006268;DNA unwinding during replication;0.0308657764117683!GO:0006635;fatty acid beta-oxidation;0.0310961406225015!GO:0006007;glucose catabolic process;0.0312788827067362!GO:0000030;mannosyltransferase activity;0.0317803624504998!GO:0009966;regulation of signal transduction;0.0318268177043882!GO:0005637;nuclear inner membrane;0.0320518931802449!GO:0043068;positive regulation of programmed cell death;0.03239190469425!GO:0012506;vesicle membrane;0.0324790595363808!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0334324649272472!GO:0006302;double-strand break repair;0.0340687220154531!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0348531600649519!GO:0032981;mitochondrial respiratory chain complex I assembly;0.035134354374347!GO:0010257;NADH dehydrogenase complex assembly;0.035134354374347!GO:0033108;mitochondrial respiratory chain complex assembly;0.035134354374347!GO:0006352;transcription initiation;0.0355180151549691!GO:0019318;hexose metabolic process;0.0356640792157404!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.035712504273496!GO:0007242;intracellular signaling cascade;0.0358885730098804!GO:0004518;nuclease activity;0.0359175165031491!GO:0030833;regulation of actin filament polymerization;0.0368595281104636!GO:0003779;actin binding;0.0370367443718506!GO:0006984;ER-nuclear signaling pathway;0.0371625276930378!GO:0007040;lysosome organization and biogenesis;0.0380703598559315!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0381164275008877!GO:0033559;unsaturated fatty acid metabolic process;0.0391242133254201!GO:0006636;unsaturated fatty acid biosynthetic process;0.0391242133254201!GO:0007265;Ras protein signal transduction;0.0391790678518862!GO:0031903;microbody membrane;0.0394637752249836!GO:0005778;peroxisomal membrane;0.0394637752249836!GO:0043130;ubiquitin binding;0.0394894887948449!GO:0032182;small conjugating protein binding;0.0394894887948449!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.040830722821673!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.040830722821673!GO:0048144;fibroblast proliferation;0.0413340675673132!GO:0048145;regulation of fibroblast proliferation;0.0413340675673132!GO:0006739;NADP metabolic process;0.0413756123997313!GO:0005996;monosaccharide metabolic process;0.041591791913852!GO:0009166;nucleotide catabolic process;0.041591791913852!GO:0046822;regulation of nucleocytoplasmic transport;0.041961807837444!GO:0008312;7S RNA binding;0.0421504901140554!GO:0030911;TPR domain binding;0.0422668517020391!GO:0005784;translocon complex;0.0422947851154278!GO:0051537;2 iron, 2 sulfur cluster binding;0.0426149675537429!GO:0032507;maintenance of cellular protein localization;0.0438227253478241!GO:0000910;cytokinesis;0.0438357405056939!GO:0007021;tubulin folding;0.0441562704875322!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.044185341811679!GO:0016311;dephosphorylation;0.0444363405073212!GO:0043022;ribosome binding;0.0446182382561872!GO:0018193;peptidyl-amino acid modification;0.045125623602549!GO:0008180;signalosome;0.0455671805655123!GO:0016584;nucleosome positioning;0.0457399661820606!GO:0046979;TAP2 binding;0.0461606063786598!GO:0046977;TAP binding;0.0461606063786598!GO:0046978;TAP1 binding;0.0461606063786598!GO:0050811;GABA receptor binding;0.0461606063786598!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0473580370999104!GO:0003729;mRNA binding;0.0478048800455946!GO:0048146;positive regulation of fibroblast proliferation;0.04797127325053!GO:0006749;glutathione metabolic process;0.04797127325053!GO:0008637;apoptotic mitochondrial changes;0.0483703526169647!GO:0006497;protein amino acid lipidation;0.0490891824984395!GO:0006401;RNA catabolic process;0.0492177824090448!GO:0006807;nitrogen compound metabolic process;0.0494625734630409!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0496524446964476!GO:0045047;protein targeting to ER;0.0496524446964476!GO:0030508;thiol-disulfide exchange intermediate activity;0.0496524446964476!GO:0045334;clathrin-coated endocytic vesicle;0.0496590148804893!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0498077592992621
|sample_id=11420
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=hair follicle
|top_motifs=HES1:2.42005990871;GTF2A1,2:1.78654914346;POU2F1..3:1.63711116942;ZNF238:1.5581711626;PBX1:1.46022563213;PAX1,9:1.07160132294;TP53:1.02170092604;GFI1:1.0029707412;TFAP2{A,C}:0.997400426144;GLI1..3:0.989492028346;ESR1:0.984358056655;RXR{A,B,G}:0.922935565593;SRF:0.915914238441;HMX1:0.7984839588;ZNF423:0.791893579847;TLX1..3_NFIC{dimer}:0.766881236131;EBF1:0.742842985416;TEAD1:0.734644050603;TBP:0.716873558445;IKZF1:0.715602590232;NR5A1,2:0.691915213779;ZBTB6:0.68487122033;HAND1,2:0.673815506873;GFI1B:0.66291664761;TFCP2:0.60136991823;TFAP4:0.585656280421;MTF1:0.584436807476;TOPORS:0.56298977157;GZF1:0.557881604574;HOX{A5,B5}:0.552470088763;BACH2:0.524112485914;ZNF148:0.513776995513;NFE2L1:0.46755873109;SOX{8,9,10}:0.449485442386;SPZ1:0.434481880377;TFDP1:0.41619167011;NFE2:0.407074212289;FOS_FOS{B,L1}_JUN{B,D}:0.402744413631;TFAP2B:0.359950552332;LEF1_TCF7_TCF7L1,2:0.358627488429;ZIC1..3:0.358412980144;HIC1:0.351764318212;ESRRA:0.344386861646;STAT5{A,B}:0.341239276632;AR:0.327102942637;EN1,2:0.306908500624;PRRX1,2:0.296653910925;NFE2L2:0.296499126758;NR1H4:0.284570988788;PAX8:0.276452618734;NR3C1:0.275471456412;E2F1..5:0.272897445376;RXRA_VDR{dimer}:0.267878194992;GTF2I:0.220676975542;NFIX:0.218340384718;CRX:0.188391898554;PPARG:0.185464832325;SOX17:0.184976868726;HOXA9_MEIS1:0.17424025705;ONECUT1,2:0.173413297119;NFATC1..3:0.171206475987;POU6F1:0.163779791767;NFY{A,B,C}:0.161504122746;NANOG:0.15283986282;TAL1_TCF{3,4,12}:0.143989373704;HNF1A:0.143386929727;TBX4,5:0.12474262446;MEF2{A,B,C,D}:0.119897297138;CDC5L:0.0812346758709;REST:0.0656714557499;UFEwm:0.0318325950991;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.031637448948;MYB:0.0181406163523;XCPE1{core}:0.00663620036334;YY1:0.00352137861382;ALX4:0.00171528078355;POU3F1..4:0.000431483319529;NANOG{mouse}:-0.0200606171773;FOXL1:-0.0246237141523;RUNX1..3:-0.0482354405079;bHLH_family:-0.0490874495308;MTE{core}:-0.0629971217307;NKX3-2:-0.0667040417008;XBP1:-0.0722023756464;MAFB:-0.0780453052222;PAX5:-0.090149184246;FOSL2:-0.0916988228512;KLF4:-0.105628613848;LHX3,4:-0.11965948286;ETS1,2:-0.124233192445;NKX2-3_NKX2-5:-0.127676644249;MYBL2:-0.150276917926;JUN:-0.152241343745;HLF:-0.161528431619;NFKB1_REL_RELA:-0.164805304686;HOX{A6,A7,B6,B7}:-0.166155190967;MZF1:-0.168150994253;NR6A1:-0.170583666653;AIRE:-0.172636192384;STAT2,4,6:-0.174215394821;SP1:-0.181341954514;NKX2-2,8:-0.194115218504;ATF6:-0.201665180466;HNF4A_NR2F1,2:-0.204064418684;ARID5B:-0.217064373742;DBP:-0.247131058316;SPIB:-0.261339665438;PAX2:-0.273186998715;POU5F1:-0.2766708434;HSF1,2:-0.301086033872;MED-1{core}:-0.318716820115;POU1F1:-0.32068731709;GATA6:-0.320756342835;PATZ1:-0.325493607939;PAX3,7:-0.334743274312;MAZ:-0.343367514695;IRF1,2:-0.390549675354;EGR1..3:-0.405108105275;RFX2..5_RFXANK_RFXAP:-0.430327941334;DMAP1_NCOR{1,2}_SMARC:-0.432669698989;FOX{F1,F2,J1}:-0.439306355593;PRDM1:-0.44086027498;RREB1:-0.456684455167;ZNF143:-0.462702054357;CUX2:-0.474562665339;SPI1:-0.481761931762;FOXM1:-0.485835812267;TGIF1:-0.491678778705;CEBPA,B_DDIT3:-0.497491137247;GCM1,2:-0.497895320836;RFX1:-0.534112748803;SNAI1..3:-0.540134543739;HIF1A:-0.562284951897;FOXA2:-0.595296084943;FOXO1,3,4:-0.599484543555;ELF1,2,4:-0.601272258296;SOX5:-0.602443164378;OCT4_SOX2{dimer}:-0.615605780707;T:-0.616399539399;PAX6:-0.640993325544;NKX2-1,4:-0.652912320752;VSX1,2:-0.663787771192;AHR_ARNT_ARNT2:-0.664163717773;ATF5_CREB3:-0.672048851322;MYFfamily:-0.696768048013;LMO2:-0.698162813458;ELK1,4_GABP{A,B1}:-0.6983033086;NHLH1,2:-0.706157996891;CREB1:-0.706730371356;ALX1:-0.715808264001;NFIL3:-0.717866737772;ZNF384:-0.758656274736;ZFP161:-0.767762904915;SOX2:-0.787295528773;HBP1_HMGB_SSRP1_UBTF:-0.789760706959;NRF1:-0.802867739963;EP300:-0.805691607971;PITX1..3:-0.811067927027;SMAD1..7,9:-0.816093131224;GATA4:-0.830185105916;HOX{A4,D4}:-0.859160178589;IRF7:-0.866243765504;ZEB1:-0.872854026589;ADNP_IRX_SIX_ZHX:-0.936870676384;FOX{I1,J2}:-0.951479102065;RORA:-0.963788820153;BREu{core}:-0.970746565629;NKX3-1:-0.974524046913;MYOD1:-0.980284957666;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01390080512;NKX6-1,2:-1.01777631111;RBPJ:-1.03170202597;FOXQ1:-1.0653528127;TLX2:-1.09346439886;PDX1:-1.09942653748;FOX{D1,D2}:-1.19139812716;ATF2:-1.23083024342;ATF4:-1.23498929023;FOXP3:-1.25015397484;STAT1,3:-1.5033953596;BPTF:-1.53599061932;HMGA1,2:-1.56167261322;EVI1:-1.61337032772;ZBTB16:-1.6287458623;IKZF2:-1.64868240304;SREBF1,2:-1.66904713576;PAX4:-1.77433245149;FOXN1:-1.83656949927;CDX1,2,4:-1.90683830211;FOXP1:-2.05678304904;FOXD3:-2.12797111309;TEF:-2.37861532231
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11420-118F7;search_select_hide=table117:FF:11420-118F7
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Hair Follicle Dermal Papilla Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12030
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuehair follicle
dev stage36 years old adult
sexfemale
age36
cell typehair follicle, dermal papilla cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1388
catalog numberCA602-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005852
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12030 CAGE DRX008298 DRR009170
Accession ID Hg19

Library idBAMCTSS
CNhs12030 DRZ000595 DRZ001980
Accession ID Hg38

Library idBAMCTSS
CNhs12030 DRZ011945 DRZ013330
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005852
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GTTTCG sRNA-Seq DRX037051 DRR041417
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GTTTCG DRZ007059


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.159
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0419
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.575
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.349
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.281
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.377
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed1.034
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte1.215
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus1.201
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.479
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.377
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.377
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12030

Jaspar motifP-value
MA0002.25.68674e-4
MA0003.10.125
MA0004.10.991
MA0006.10.167
MA0007.10.067
MA0009.10.627
MA0014.10.97
MA0017.10.754
MA0018.20.029
MA0019.10.187
MA0024.10.467
MA0025.10.229
MA0027.10.886
MA0028.10.0541
MA0029.10.791
MA0030.10.255
MA0031.10.00157
MA0035.20.898
MA0038.10.571
MA0039.20.478
MA0040.10.964
MA0041.10.312
MA0042.10.47
MA0043.12.97726e-6
MA0046.10.0146
MA0047.20.592
MA0048.10.288
MA0050.10.273
MA0051.10.573
MA0052.10.00646
MA0055.10.0627
MA0057.10.12
MA0058.10.62
MA0059.10.315
MA0060.10.0104
MA0061.10.545
MA0062.20.00435
MA0065.20.111
MA0066.10.43
MA0067.10.122
MA0068.10.157
MA0069.10.51
MA0070.10.195
MA0071.10.695
MA0072.10.816
MA0073.10.615
MA0074.10.402
MA0076.10.006
MA0077.10.489
MA0078.10.96
MA0079.20.797
MA0080.20.107
MA0081.10.51
MA0083.10.00273
MA0084.10.733
MA0087.10.638
MA0088.10.114
MA0090.10.00922
MA0091.10.0594
MA0092.10.046
MA0093.10.845
MA0099.22.11266e-14
MA0100.10.434
MA0101.10.852
MA0102.20.00215
MA0103.10.184
MA0104.20.652
MA0105.10.245
MA0106.10.0877
MA0107.10.886
MA0108.23.6015e-5
MA0111.10.386
MA0112.20.00455
MA0113.10.285
MA0114.10.351
MA0115.10.508
MA0116.10.122
MA0117.10.506
MA0119.10.141
MA0122.10.681
MA0124.10.901
MA0125.10.973
MA0131.10.172
MA0135.10.0288
MA0136.10.146
MA0137.20.237
MA0138.20.066
MA0139.10.901
MA0140.10.923
MA0141.10.106
MA0142.10.163
MA0143.10.431
MA0144.10.936
MA0145.10.154
MA0146.10.0642
MA0147.10.985
MA0148.10.614
MA0149.10.137
MA0150.10.00625
MA0152.10.531
MA0153.10.144
MA0154.10.0813
MA0155.10.133
MA0156.10.262
MA0157.10.164
MA0159.10.671
MA0160.10.071
MA0162.10.0475
MA0163.10.0474
MA0164.10.547
MA0258.10.027
MA0259.10.668



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12030

Novel motifP-value
10.765
100.857
1000.933
1010.227
1020.827
1030.807
1040.544
1050.105
1060.0292
1070.0129
1080.909
1090.0284
110.0803
1100.166
1110.624
1120.671
1130.183
1140.333
1150.856
1160.149
1170.476
1180.898
1190.156
120.161
1200.264
1210.375
1220.44
1230.411
1240.481
1250.868
1260.438
1270.108
1280.191
1290.706
130.788
1300.00998
1310.979
1320.939
1330.785
1340.73
1350.161
1360.509
1370.493
1380.815
1390.522
140.575
1400.975
1410.663
1420.00706
1430.0255
1440.891
1450.179
1460.0444
1470.244
1480.34
1490.202
150.567
1500.195
1510.55
1520.0431
1530.354
1540.64
1550.322
1560.322
1570.998
1580.0975
1590.506
160.209
1600.0563
1610.635
1620.0209
1630.467
1640.622
1650.222
1660.138
1670.487
1680.774
1690.0371
170.147
180.262
190.0554
20.277
200.287
210.738
220.0824
230.201
240.179
250.597
260.00315
270.293
280.263
290.767
30.634
300.168
310.511
320.0124
330.25
340.29
350.854
360.831
370.227
380.643
390.56
40.686
400.0493
410.693
420.752
430.132
440.476
450.237
460.0617
470.501
480.167
490.263
50.863
500.365
510.452
520.205
530.962
540.659
550.672
560.511
570.339
580.959
590.0246
60.988
600.332
610.425
620.59
630.217
640.313
650.167
660.279
670.753
680.403
690.106
70.851
700.876
710.112
720.955
730.0377
740.743
750.863
760.55
770.0116
780.652
790.442
80.0833
800.799
810.675
820.496
830.448
840.203
850.119
860.842
870.0324
880.191
890.515
90.0963
900.132
910.0487
920.887
930.784
940.387
950.122
960.348
970.412
980.131
990.0109



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12030


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002559 (hair follicle cell)
0000346 (hair follicle dermal papilla cell)
1000428 (stem cell of epidermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0000412 (dermal papilla)
0002067 (dermis)
0001992 (papillary layer of dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000071 (human hair follicle dermal papilla cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)

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