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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005584
|DRA_sample_Accession=CAGE@SAMD00005584
|accession_numbers=CAGE;DRX008708;DRR009580;DRZ001005;DRZ002390
|accession_numbers=CAGE;DRX008708;DRR009580;DRZ001005;DRZ002390;DRZ012355;DRZ013740
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000007,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002530,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000007,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002530,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10180
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10180
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10180
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10180
|name=pituitary gland - adult, donor10196
|name=pituitary gland - adult, donor10196
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[35]=35&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=RFX1:3.50377996178;LHX3,4:3.44258808165;ALX1:3.33206867987;POU6F1:2.72396209933;RFX2..5_RFXANK_RFXAP:2.47661433186;ADNP_IRX_SIX_ZHX:2.37651977111;ATF6:2.33211812166;AIRE:2.257639025;FOXP3:2.05444961297;ATF2:2.04428374357;FOXN1:2.00936720316;POU1F1:1.95980234543;AR:1.89126607717;REST:1.83600135169;NRF1:1.8161414488;RREB1:1.65188367378;ONECUT1,2:1.64531052261;SNAI1..3:1.6442454742;MYOD1:1.61187214216;CREB1:1.51652948646;MYFfamily:1.50991523852;MAFB:1.50708077652;ZEB1:1.4513392871;GATA4:1.42193646257;CUX2:1.40975042612;FOXA2:1.40432624956;PAX1,9:1.40017817851;TGIF1:1.3830337221;HIF1A:1.38044843057;SREBF1,2:1.36823609707;LMO2:1.3452330938;AHR_ARNT_ARNT2:1.33590867249;JUN:1.30216753226;TEF:1.23369791128;XBP1:1.1893255708;NHLH1,2:1.17173189036;GCM1,2:1.1350271866;ATF4:1.10074114663;HMGA1,2:1.0842785572;ARID5B:1.07585207764;BPTF:1.06854352767;HOX{A6,A7,B6,B7}:1.05811866153;NKX3-2:1.03079159341;FOX{D1,D2}:1.00788179533;PRDM1:1.00262188064;HAND1,2:0.989538343004;EP300:0.970463524633;EGR1..3:0.961817557248;ZFP161:0.951109833056;TBX4,5:0.949989478782;NKX2-3_NKX2-5:0.923475336283;MTF1:0.918394745339;NANOG:0.915915221355;YY1:0.892954608045;MED-1{core}:0.880030127401;HMX1:0.87552963238;NKX6-1,2:0.863867148807;ESRRA:0.860461277868;PAX4:0.854475582291;PRRX1,2:0.843566373027;HIC1:0.807598500892;TLX2:0.79860127023;ZNF143:0.791778573801;GFI1B:0.773607404061;MAZ:0.702585492901;ATF5_CREB3:0.698672693604;PAX6:0.698286652533;GTF2I:0.678664046844;ELK1,4_GABP{A,B1}:0.669612353055;ZIC1..3:0.62518972214;SP1:0.614767576219;PATZ1:0.574533018068;ZBTB6:0.535631483464;HOX{A4,D4}:0.529312436539;HOXA9_MEIS1:0.508028105475;STAT1,3:0.503424579567;KLF4:0.503321507704;EVI1:0.497828361297;STAT2,4,6:0.49121125902;POU3F1..4:0.440068012145;SOX17:0.421883411121;MZF1:0.411015858123;IKZF2:0.409836500541;TBP:0.394667507573;GFI1:0.389390254944;VSX1,2:0.382243562035;IRF7:0.38015435168;PAX5:0.374159411024;SMAD1..7,9:0.371818612773;NFIX:0.352467535769;MTE{core}:0.321865150962;SOX5:0.288488041874;DBP:0.286329573724;ZBTB16:0.270565820216;CDC5L:0.270478943635;NFIL3:0.268926911697;NR3C1:0.265395963307;TFAP2B:0.249344266908;NR1H4:0.240684791173;LEF1_TCF7_TCF7L1,2:0.229471955144;MEF2{A,B,C,D}:0.19717909577;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.164798926515;PITX1..3:0.164721711609;RBPJ:0.138773385021;OCT4_SOX2{dimer}:0.114528701117;FOX{F1,F2,J1}:0.0990219424086;FOXQ1:0.0937497240633;BREu{core}:0.0797324268502;FOXP1:0.0721763467396;PDX1:0.055346484309;PAX8:0.0446773722261;CDX1,2,4:0.0421827605111;FOXM1:0.0295846423941;SOX{8,9,10}:0.018192872644;FOXD3:0.0175836585382;RORA:0.0151744045582;TOPORS:0.0145815728135;ZNF423:0.00860380520507;TAL1_TCF{3,4,12}:0.000585040423519;IKZF1:-0.0279924385538;CEBPA,B_DDIT3:-0.092784870159;MYBL2:-0.110143785234;NFE2L1:-0.114312059835;CRX:-0.125369878473;FOX{I1,J2}:-0.137812711883;PAX3,7:-0.158959077504;IRF1,2:-0.17651068925;GATA6:-0.202530406437;SPIB:-0.243108955523;PBX1:-0.254539354827;SOX2:-0.2647916932;EBF1:-0.272549014493;FOXO1,3,4:-0.282560407167;NKX2-1,4:-0.285088953466;ELF1,2,4:-0.285558631896;GLI1..3:-0.294801963204;SPZ1:-0.296400781818;NFY{A,B,C}:-0.297276226154;HBP1_HMGB_SSRP1_UBTF:-0.302028890332;HNF1A:-0.309091475641;ALX4:-0.309402933599;TLX1..3_NFIC{dimer}:-0.311814775691;ZNF238:-0.344167262978;NKX3-1:-0.404107854908;NFE2:-0.432718787838;TEAD1:-0.432864472777;FOSL2:-0.445601162515;NANOG{mouse}:-0.456987375562;PAX2:-0.491673202881;ZNF384:-0.502373011165;ETS1,2:-0.516072178541;UFEwm:-0.524217483303;DMAP1_NCOR{1,2}_SMARC:-0.537185180144;SPI1:-0.537374279364;TFAP4:-0.566663554275;BACH2:-0.568012726676;HSF1,2:-0.600044086855;PPARG:-0.618072127815;FOS_FOS{B,L1}_JUN{B,D}:-0.67887540972;NR6A1:-0.697561472751;HLF:-0.70531156432;GZF1:-0.718270434087;TP53:-0.723228306617;POU2F1..3:-0.748088855712;XCPE1{core}:-0.748635164746;RXRA_VDR{dimer}:-0.760479828445;GTF2A1,2:-0.760963458638;NR5A1,2:-0.778847774527;NFATC1..3:-0.819002832854;NFKB1_REL_RELA:-0.822910623893;NFE2L2:-0.857056491193;MYB:-0.863018937184;TFAP2{A,C}:-0.879886878058;HNF4A_NR2F1,2:-0.888338148401;RUNX1..3:-0.91725171879;HOX{A5,B5}:-0.938431525722;TFCP2:-1.03651592612;ESR1:-1.0368461614;TFDP1:-1.04054834926;FOXL1:-1.06981392956;T:-1.07164100554;bHLH_family:-1.07751983804;RXR{A,B,G}:-1.15771406362;POU5F1:-1.21897710659;E2F1..5:-1.32957529129;SRF:-1.35597912393;STAT5{A,B}:-1.39562832554;EN1,2:-1.43656120757;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.56640441235;ZNF148:-1.61245466233;NKX2-2,8:-1.80035370656;HES1:-2.24848063024
|top_motifs=RFX1:3.50377996178;LHX3,4:3.44258808165;ALX1:3.33206867987;POU6F1:2.72396209933;RFX2..5_RFXANK_RFXAP:2.47661433186;ADNP_IRX_SIX_ZHX:2.37651977111;ATF6:2.33211812166;AIRE:2.257639025;FOXP3:2.05444961297;ATF2:2.04428374357;FOXN1:2.00936720316;POU1F1:1.95980234543;AR:1.89126607717;REST:1.83600135169;NRF1:1.8161414488;RREB1:1.65188367378;ONECUT1,2:1.64531052261;SNAI1..3:1.6442454742;MYOD1:1.61187214216;CREB1:1.51652948646;MYFfamily:1.50991523852;MAFB:1.50708077652;ZEB1:1.4513392871;GATA4:1.42193646257;CUX2:1.40975042612;FOXA2:1.40432624956;PAX1,9:1.40017817851;TGIF1:1.3830337221;HIF1A:1.38044843057;SREBF1,2:1.36823609707;LMO2:1.3452330938;AHR_ARNT_ARNT2:1.33590867249;JUN:1.30216753226;TEF:1.23369791128;XBP1:1.1893255708;NHLH1,2:1.17173189036;GCM1,2:1.1350271866;ATF4:1.10074114663;HMGA1,2:1.0842785572;ARID5B:1.07585207764;BPTF:1.06854352767;HOX{A6,A7,B6,B7}:1.05811866153;NKX3-2:1.03079159341;FOX{D1,D2}:1.00788179533;PRDM1:1.00262188064;HAND1,2:0.989538343004;EP300:0.970463524633;EGR1..3:0.961817557248;ZFP161:0.951109833056;TBX4,5:0.949989478782;NKX2-3_NKX2-5:0.923475336283;MTF1:0.918394745339;NANOG:0.915915221355;YY1:0.892954608045;MED-1{core}:0.880030127401;HMX1:0.87552963238;NKX6-1,2:0.863867148807;ESRRA:0.860461277868;PAX4:0.854475582291;PRRX1,2:0.843566373027;HIC1:0.807598500892;TLX2:0.79860127023;ZNF143:0.791778573801;GFI1B:0.773607404061;MAZ:0.702585492901;ATF5_CREB3:0.698672693604;PAX6:0.698286652533;GTF2I:0.678664046844;ELK1,4_GABP{A,B1}:0.669612353055;ZIC1..3:0.62518972214;SP1:0.614767576219;PATZ1:0.574533018068;ZBTB6:0.535631483464;HOX{A4,D4}:0.529312436539;HOXA9_MEIS1:0.508028105475;STAT1,3:0.503424579567;KLF4:0.503321507704;EVI1:0.497828361297;STAT2,4,6:0.49121125902;POU3F1..4:0.440068012145;SOX17:0.421883411121;MZF1:0.411015858123;IKZF2:0.409836500541;TBP:0.394667507573;GFI1:0.389390254944;VSX1,2:0.382243562035;IRF7:0.38015435168;PAX5:0.374159411024;SMAD1..7,9:0.371818612773;NFIX:0.352467535769;MTE{core}:0.321865150962;SOX5:0.288488041874;DBP:0.286329573724;ZBTB16:0.270565820216;CDC5L:0.270478943635;NFIL3:0.268926911697;NR3C1:0.265395963307;TFAP2B:0.249344266908;NR1H4:0.240684791173;LEF1_TCF7_TCF7L1,2:0.229471955144;MEF2{A,B,C,D}:0.19717909577;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.164798926515;PITX1..3:0.164721711609;RBPJ:0.138773385021;OCT4_SOX2{dimer}:0.114528701117;FOX{F1,F2,J1}:0.0990219424086;FOXQ1:0.0937497240633;BREu{core}:0.0797324268502;FOXP1:0.0721763467396;PDX1:0.055346484309;PAX8:0.0446773722261;CDX1,2,4:0.0421827605111;FOXM1:0.0295846423941;SOX{8,9,10}:0.018192872644;FOXD3:0.0175836585382;RORA:0.0151744045582;TOPORS:0.0145815728135;ZNF423:0.00860380520507;TAL1_TCF{3,4,12}:0.000585040423519;IKZF1:-0.0279924385538;CEBPA,B_DDIT3:-0.092784870159;MYBL2:-0.110143785234;NFE2L1:-0.114312059835;CRX:-0.125369878473;FOX{I1,J2}:-0.137812711883;PAX3,7:-0.158959077504;IRF1,2:-0.17651068925;GATA6:-0.202530406437;SPIB:-0.243108955523;PBX1:-0.254539354827;SOX2:-0.2647916932;EBF1:-0.272549014493;FOXO1,3,4:-0.282560407167;NKX2-1,4:-0.285088953466;ELF1,2,4:-0.285558631896;GLI1..3:-0.294801963204;SPZ1:-0.296400781818;NFY{A,B,C}:-0.297276226154;HBP1_HMGB_SSRP1_UBTF:-0.302028890332;HNF1A:-0.309091475641;ALX4:-0.309402933599;TLX1..3_NFIC{dimer}:-0.311814775691;ZNF238:-0.344167262978;NKX3-1:-0.404107854908;NFE2:-0.432718787838;TEAD1:-0.432864472777;FOSL2:-0.445601162515;NANOG{mouse}:-0.456987375562;PAX2:-0.491673202881;ZNF384:-0.502373011165;ETS1,2:-0.516072178541;UFEwm:-0.524217483303;DMAP1_NCOR{1,2}_SMARC:-0.537185180144;SPI1:-0.537374279364;TFAP4:-0.566663554275;BACH2:-0.568012726676;HSF1,2:-0.600044086855;PPARG:-0.618072127815;FOS_FOS{B,L1}_JUN{B,D}:-0.67887540972;NR6A1:-0.697561472751;HLF:-0.70531156432;GZF1:-0.718270434087;TP53:-0.723228306617;POU2F1..3:-0.748088855712;XCPE1{core}:-0.748635164746;RXRA_VDR{dimer}:-0.760479828445;GTF2A1,2:-0.760963458638;NR5A1,2:-0.778847774527;NFATC1..3:-0.819002832854;NFKB1_REL_RELA:-0.822910623893;NFE2L2:-0.857056491193;MYB:-0.863018937184;TFAP2{A,C}:-0.879886878058;HNF4A_NR2F1,2:-0.888338148401;RUNX1..3:-0.91725171879;HOX{A5,B5}:-0.938431525722;TFCP2:-1.03651592612;ESR1:-1.0368461614;TFDP1:-1.04054834926;FOXL1:-1.06981392956;T:-1.07164100554;bHLH_family:-1.07751983804;RXR{A,B,G}:-1.15771406362;POU5F1:-1.21897710659;E2F1..5:-1.32957529129;SRF:-1.35597912393;STAT5{A,B}:-1.39562832554;EN1,2:-1.43656120757;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.56640441235;ZNF148:-1.61245466233;NKX2-2,8:-1.80035370656;HES1:-2.24848063024
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10180-103C9;search_select_hide=table117:FF:10180-103C9
}}
}}

Latest revision as of 12:25, 3 June 2020

Name:pituitary gland - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13805
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepituitary gland
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005584
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13805 CAGE DRX008708 DRR009580
Accession ID Hg19

Library idBAMCTSS
CNhs13805 DRZ001005 DRZ002390
Accession ID Hg38

Library idBAMCTSS
CNhs13805 DRZ012355 DRZ013740
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.177
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.402
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.345
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0.849
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid1.551
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.206
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.263
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.327
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0303
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.166
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.932
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.138
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.768
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0515
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.206
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0279
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.352
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.206
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.663
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0538
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.345
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13805

Jaspar motifP-value
MA0002.20.00555
MA0003.10.215
MA0004.10.282
MA0006.10.293
MA0007.10.604
MA0009.10.672
MA0014.10.927
MA0017.10.0256
MA0018.22.49177e-4
MA0019.10.729
MA0024.10.292
MA0025.10.666
MA0027.10.193
MA0028.10.494
MA0029.10.223
MA0030.10.0561
MA0031.10.944
MA0035.20.0619
MA0038.10.867
MA0039.20.287
MA0040.10.918
MA0041.10.471
MA0042.10.425
MA0043.10.00744
MA0046.10.192
MA0047.20.192
MA0048.10.0365
MA0050.10.033
MA0051.10.232
MA0052.10.582
MA0055.10.0312
MA0057.10.362
MA0058.10.287
MA0059.10.0634
MA0060.10.456
MA0061.10.00122
MA0062.20.899
MA0065.21.68275e-4
MA0066.10.0862
MA0067.10.851
MA0068.10.0872
MA0069.10.77
MA0070.10.745
MA0071.10.0911
MA0072.10.462
MA0073.10.451
MA0074.10.0612
MA0076.10.0939
MA0077.10.823
MA0078.10.191
MA0079.20.545
MA0080.23.17484e-10
MA0081.10.105
MA0083.16.04598e-4
MA0084.10.498
MA0087.10.432
MA0088.10.542
MA0090.10.723
MA0091.10.694
MA0092.10.233
MA0093.10.301
MA0099.22.94101e-15
MA0100.10.563
MA0101.17.89905e-4
MA0102.20.579
MA0103.10.144
MA0104.20.305
MA0105.10.00216
MA0106.10.0344
MA0107.13.35378e-4
MA0108.20.497
MA0111.10.792
MA0112.25.51689e-4
MA0113.10.901
MA0114.10.00574
MA0115.10.801
MA0116.10.0108
MA0117.10.53
MA0119.10.0209
MA0122.10.281
MA0124.10.87
MA0125.10.326
MA0131.10.89
MA0135.10.0252
MA0136.12.57381e-6
MA0137.20.175
MA0138.20.0485
MA0139.10.473
MA0140.10.00346
MA0141.10.0271
MA0142.10.868
MA0143.10.437
MA0144.10.673
MA0145.10.0998
MA0146.10.00886
MA0147.10.219
MA0148.10.131
MA0149.10.0391
MA0150.10.00758
MA0152.10.739
MA0153.10.766
MA0154.10.0106
MA0155.10.455
MA0156.10.00258
MA0157.10.229
MA0159.10.258
MA0160.10.0482
MA0162.10.0605
MA0163.13.48736e-5
MA0164.10.487
MA0258.10.00552
MA0259.10.755



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13805

Novel motifP-value
10.142
100.0569
1000.545
1010.765
1020.922
1030.123
1040.382
1050.419
1063.98295e-4
1070.0147
1080.733
1090.025
110.0428
1100.137
1110.188
1120.778
1130.361
1140.247
1150.964
1160.0836
1170.0806
1180.268
1190.129
120.982
1200.162
1210.735
1220.592
1230.466
1240.925
1250.26
1260.19
1270.357
1280.0444
1290.229
130.00818
1300.103
1310.167
1320.777
1330.0114
1340.558
1350.042
1360.167
1370.0181
1380.759
1390.683
140.996
1400.742
1410.955
1420.934
1430.0604
1440.564
1450.0913
1460.221
1470.802
1480.0446
1490.204
150.13
1500.132
1510.465
1520.0246
1530.852
1540.914
1550.755
1560.464
1570.326
1580.0501
1590.0149
160.163
1600.0353
1610.39
1620.836
1630.833
1640.189
1650.21
1660.752
1670.763
1680.0597
1690.00402
170.0648
180.11
190.139
20.517
200.747
210.0382
220.0493
230.0271
240.0678
250.699
260.0012
270.559
280.737
290.049
30.117
300.894
310.862
320.018
330.109
340.374
350.774
360.216
370.101
380.158
390.13
40.922
400.103
410.257
420.493
430.0913
440.262
450.455
460.0734
470.199
480.103
490.121
50.345
500.203
510.347
520.112
530.565
540.351
550.616
560.693
570.27
580.629
590.0184
60.409
600.0167
610.207
620.157
630.0394
640.272
650.0604
660.142
670.46
680.391
690.284
70.121
700.206
710.0426
720.956
730.0524
740.598
750.0997
760.769
770.0971
780.0228
790.71
80.0573
800.716
810.32
820.56
830.0457
840.366
850.165
860.218
875.59295e-4
880.41
890.579
90.239
900.344
910.639
920.761
930.534
940.284
950.11
960.496
970.842
980.601
990.281



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13805


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000007 (pituitary gland)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010162 (human pituitary gland - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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