FFCP PHASE1:Hg19::chr10:102505552..102505563,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:102505552..102505563,+ to FFCP PHASE1:Hg19::chr10:102505552..102505563,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5076 | |EntrezGene=5076 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8616 | |HGNC=8616 | ||
|TSSclassifier=strong | |||
|UniProt=Q02962 | |UniProt=Q02962 | ||
|association_with_transcript=84bp_to_ENST00000355243,ENST00000361791,ENST00000370294,ENST00000370296,ENST00000428433,NM_000278,NM_003987,NM_003988,NM_003989,NM_003990,uc001krk.3,uc001krl.3,uc001krm.3,uc001krn.3,uc001kro.3,uc010qps.1_5end | |||
|cluster_id=chr10:102505552..102505563,+ | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_5_at_PAX2_5end | |||
|id=chr10:102505552..102505563,+ | |||
|ontology_enrichment_celltype=CL:1000507!4.56e-30!12;CL:1000494!4.56e-30!12;CL:1000497!2.67e-29!18;CL:0002518!2.67e-29!18;CL:1000449!3.87e-22!16;CL:0002681!1.10e-16!13;CL:0002584!1.10e-16!13;CL:0000239!8.65e-15!3;CL:1000615!8.65e-15!3;CL:0002306!8.65e-15!3;CL:0000650!2.12e-07!3;CL:1000618!2.12e-07!3;CL:1001318!2.12e-07!3;CL:0002173!2.12e-07!3;CL:1000500!2.12e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000650;3.01e-40;2!CL:1000500;3.01e-40;2!CL:1000618;3.01e-40;2!CL:1001318;3.01e-40;2!CL:0002173;3.01e-40;2!CL:1000507;7.55e-32;10!CL:1000494;7.55e-32;10!CL:1000497;4.98e-29;17!CL:0002518;4.98e-29;17!CL:1000449;2.06e-21;15!CL:0000669;1.04e-20;4!CL:0002681;1.97e-15;12!CL:0002584;1.97e-15;12!CL:1000746;2.82e-12;7!CL:1000612;2.82e-12;7!CL:0000239;7.50e-08;3!CL:1000615;7.50e-08;3!CL:0002306;7.50e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000650,3.68e-40,2;CL:1000500,3.68e-40,2;CL:1000618,3.68e-40,2;CL:1001318,3.68e-40,2;CL:0002173,3.68e-40,2;CL:1000507,8.18e-32,10;CL:1000494,8.18e-32,10;CL:1000497,5.13e-29,17;CL:0002518,5.13e-29,17;CL:1000449,2.17e-21,15;CL:0000669,1.15e-20,4;CL:0002681,1.92e-15,12;CL:0002584,1.92e-15,12;CL:1000746,2.98e-12,7;CL:1000612,2.98e-12,7;CL:0000239,6.78e-08,3;CL:1000615,6.78e-08,3;CL:0002306,6.78e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0003918;1.78e-18;10!UBERON:0007687;1.78e-18;10!UBERON:0007297;1.82e-11;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002113!4.87e-41!27;UBERON:0003918!4.87e-41!27;UBERON:0005095!4.87e-41!27;UBERON:0007687!4.87e-41!27;UBERON:0000489!1.75e-38!32;UBERON:0006554!3.99e-30!44;UBERON:0009773!4.56e-30!12;UBERON:0001231!4.56e-30!12;UBERON:0004810!4.56e-30!12;UBERON:0000080!1.86e-29!18;UBERON:0002120!1.86e-29!18;UBERON:0004875!1.86e-29!18;UBERON:0005721!1.86e-29!18;UBERON:0005754!1.86e-29!18;UBERON:0007297!1.86e-29!18;UBERON:0001008!2.33e-29!45;UBERON:0004876!2.80e-26!20;UBERON:0006555!8.43e-26!17;UBERON:0005103!8.43e-26!17;UBERON:0000083!8.43e-26!17;UBERON:0009201!8.43e-26!17;UBERON:0004819!8.43e-26!17;UBERON:0006553!8.43e-26!17;UBERON:0003074!8.43e-26!17;UBERON:0003060!8.43e-26!17;UBERON:0003887!6.45e-25!21;UBERON:0000058!1.24e-23!26;UBERON:0004211!3.87e-22!16;UBERON:0001285!3.87e-22!16;UBERON:0007684!3.87e-22!16;UBERON:0003220!3.87e-22!16;UBERON:0004208!3.87e-22!16;UBERON:0003064!2.47e-21!37;UBERON:0005172!1.22e-20!55;UBERON:0005173!1.22e-20!55;UBERON:0003135!9.25e-20!11;UBERON:0002417!3.27e-18!61;UBERON:0000916!3.27e-18!61;UBERON:0001851!3.05e-17!16;UBERON:0003886!4.04e-17!63;UBERON:0001225!1.10e-16!13;UBERON:0008987!1.10e-16!13;UBERON:0003103!1.15e-15!69;UBERON:0006947!2.45e-15!3;UBERON:0004054!2.45e-15!3;UBERON:0002553!5.16e-15!70;UBERON:0006853!8.65e-15!3;UBERON:0007685!8.65e-15!3;UBERON:0004134!8.65e-15!3;UBERON:0000473!6.16e-14!8;UBERON:0000353!1.58e-12!17;UBERON:0003101!4.68e-12!22;UBERON:0000079!4.68e-12!22;UBERON:0005904!1.29e-11!4;UBERON:0005177!6.32e-10!107;UBERON:0000464!7.41e-09!104;UBERON:0009569!4.74e-08!113;UBERON:0003133!1.54e-07!48;UBERON:0003567!2.12e-07!3;UBERON:0003838!2.12e-07!3;UBERON:0005169!2.12e-07!3;UBERON:0002321!2.12e-07!3;UBERON:0005215!2.12e-07!3;UBERON:0002303!2.12e-07!3;UBERON:0002319!2.12e-07!3;UBERON:0000991!3.99e-07!21;UBERON:0009196!3.99e-07!21;UBERON:0009117!3.99e-07!21;UBERON:0005564!3.99e-07!21;UBERON:0005156!4.92e-07!59;UBERON:0000990!4.92e-07!59;UBERON:0004176!8.98e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0003567;3.01e-40;2!UBERON:0003838;3.01e-40;2!UBERON:0003586;3.01e-40;2!UBERON:0005169;3.01e-40;2!UBERON:0002321;3.01e-40;2!UBERON:0005215;3.01e-40;2!UBERON:0002303;3.01e-40;2!UBERON:0002319;3.01e-40;2!UBERON:0002113;6.21e-40;24!UBERON:0011143;6.21e-40;24!UBERON:0000489;4.74e-33;29!UBERON:0006554;5.99e-32;30!UBERON:0001008;5.99e-32;30!UBERON:0004211;7.55e-32;10!UBERON:0009773;7.55e-32;10!UBERON:0001231;7.55e-32;10!UBERON:0004810;7.55e-32;10!UBERON:0006947;8.12e-28;3!UBERON:0004054;8.12e-28;3!UBERON:0001301;1.53e-21;1!UBERON:0001000;1.88e-21;1!UBERON:0005352;1.88e-21;1!UBERON:0006555;2.06e-21;15!UBERON:0004819;2.06e-21;15!UBERON:0001285;2.06e-21;15!UBERON:0007684;2.06e-21;15!UBERON:0005904;3.82e-21;4!UBERON:0003891;1.04e-20;4!UBERON:0001225;1.97e-15;12!UBERON:0008987;1.97e-15;12!UBERON:0005172;5.24e-15;52!UBERON:0005173;5.24e-15;52!UBERON:0001851;1.75e-12;15!UBERON:0000353;1.75e-12;15!UBERON:0000074;2.82e-12;7!UBERON:0001229;2.82e-12;7!UBERON:0002417;2.13e-10;58!UBERON:0000916;2.13e-10;58!UBERON:0000058;4.75e-09;10!UBERON:0003135;2.62e-08;11!UBERON:0003103;6.07e-08;61!UBERON:0006853;7.50e-08;3!UBERON:0007685;7.50e-08;3!UBERON:0004134;7.50e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,3.34e-48,26;UBERON:0003918,3.34e-48,26;UBERON:0011143,3.34e-48,26;UBERON:0005095,3.34e-48,26;UBERON:0007687,3.34e-48,26;UBERON:0000489,2.03e-40,31;UBERON:0003567,3.68e-40,2;UBERON:0003838,3.68e-40,2;UBERON:0003586,3.68e-40,2;UBERON:0005169,3.68e-40,2;UBERON:0002321,3.68e-40,2;UBERON:0005215,3.68e-40,2;UBERON:0002303,3.68e-40,2;UBERON:0002319,3.68e-40,2;UBERON:0004810,8.18e-32,10;UBERON:0006555,5.34e-31,16;UBERON:0004819,5.34e-31,16;UBERON:0006947,8.12e-28,3;UBERON:0004054,8.12e-28,3;UBERON:0006554,1.29e-26,47;UBERON:0001008,4.66e-26,48;UBERON:0005172,3.84e-23,54;UBERON:0005173,3.84e-23,54;UBERON:0005103,5.53e-23,8;UBERON:0000083,5.53e-23,8;UBERON:0009201,5.53e-23,8;UBERON:0006553,5.53e-23,8;UBERON:0003074,5.53e-23,8;UBERON:0003060,5.53e-23,8;UBERON:0001301,1.53e-21,1;UBERON:0001000,1.88e-21,1;UBERON:0005352,1.88e-21,1;UBERON:0004211,2.17e-21,15;UBERON:0009773,2.17e-21,15;UBERON:0001231,2.17e-21,15;UBERON:0001285,2.17e-21,15;UBERON:0007684,2.17e-21,15;UBERON:0004208,2.17e-21,15;UBERON:0005904,3.82e-21,4;UBERON:0002417,8.33e-21,60;UBERON:0000916,8.33e-21,60;UBERON:0003891,1.15e-20,4;UBERON:0000080,1.62e-20,9;UBERON:0002120,1.62e-20,9;UBERON:0004875,1.62e-20,9;UBERON:0005721,1.62e-20,9;UBERON:0005754,1.62e-20,9;UBERON:0007297,1.62e-20,9;UBERON:0003103,2.50e-18,68;UBERON:0000058,3.61e-17,19;UBERON:0004876,6.36e-17,11;UBERON:0003887,1.42e-15,12;UBERON:0001225,1.92e-15,12;UBERON:0008987,1.92e-15,12;UBERON:0001851,1.71e-12,15;UBERON:0000353,1.71e-12,15;UBERON:0010532,2.98e-12,7;UBERON:0000074,2.98e-12,7;UBERON:0001229,2.98e-12,7;UBERON:0001230,2.98e-12,7;UBERON:0003220,2.98e-12,7;UBERON:0005749,2.98e-12,7;UBERON:0004199,2.98e-12,7;UBERON:0004209,2.98e-12,7;UBERON:0004198,2.98e-12,7;UBERON:0005177,3.08e-12,101;UBERON:0009569,5.34e-11,112;UBERON:0003135,2.62e-08,11;UBERON:0006853,6.78e-08,3;UBERON:0007685,6.78e-08,3;UBERON:0004134,6.78e-08,3;UBERON:0003104,1.44e-07,160;UBERON:0009142,1.44e-07,160;UBERON:0003064,5.03e-07,28 | |||
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|short_description=p5@PAX2 | |||
}} | }} |
Latest revision as of 22:11, 15 September 2015
Short description: | p5@PAX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PAX2_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | 84bp_to_ENST00000355243, ENST00000361791, ENST00000370294, ENST00000370296, ENST00000428433, NM_000278, NM_003987, NM_003988, NM_003989, NM_003990, uc001krk.3, uc001krl.3, uc001krm.3, uc001krn.3, uc001kro.3, uc010qps.1_5end |
EntrezGene: | PAX2 |
HGNC: | 8616 |
UniProt: | Q02962 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesangial cell | 3.68e-40 | 2 |
kidney interstitial cell | 3.68e-40 | 2 |
juxtaglomerular complex cell | 3.68e-40 | 2 |
renal interstitial pericyte | 3.68e-40 | 2 |
extraglomerular mesangial cell | 3.68e-40 | 2 |
kidney tubule cell | 8.18e-32 | 10 |
nephron tubule epithelial cell | 8.18e-32 | 10 |
kidney cell | 5.13e-29 | 17 |
kidney epithelial cell | 5.13e-29 | 17 |
epithelial cell of nephron | 2.17e-21 | 15 |
pericyte cell | 1.15e-20 | 4 |
kidney cortical cell | 1.92e-15 | 12 |
renal cortical epithelial cell | 1.92e-15 | 12 |
glomerular cell | 2.98e-12 | 7 |
kidney corpuscule cell | 2.98e-12 | 7 |
brush border epithelial cell | 6.78e-08 | 3 |
kidney cortex tubule cell | 6.78e-08 | 3 |
epithelial cell of proximal tubule | 6.78e-08 | 3 |