FF:10067-101I4: Difference between revisions

Latest revision as of 12:19, 3 June 2020

Name:	rectum, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11777
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	rectum
dev stage	19 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A912096
catalog number	Cat:RtHFN: Rectum
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005076

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11777		CAGE		DRX008715		DRR009587

Accession ID Hg19

Library id		BAM		CTSS
CNhs11777		DRZ001012		DRZ002397

Accession ID Hg38

Library id		BAM		CTSS
CNhs11777		DRZ012362		DRZ013747

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0538
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.203
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.282
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.573
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.162
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0.451
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.282
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.538
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.282
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.386
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.668
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.507
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.196
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.282
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.155
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.282
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.451
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.869
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.182
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.451
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.451
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.591
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11777

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.56274e-5
MA0003.1	MA0003.1	0.314
MA0004.1	MA0004.1	0.202
MA0006.1	MA0006.1	0.971
MA0007.1	MA0007.1	0.425
MA0009.1	MA0009.1	0.102
MA0014.1	MA0014.1	0.354
MA0017.1	MA0017.1	0.0604
MA0018.2	MA0018.2	0.875
MA0019.1	MA0019.1	0.501
MA0024.1	MA0024.1	0.243
MA0025.1	MA0025.1	0.334
MA0027.1	MA0027.1	0.32
MA0028.1	MA0028.1	0.00767
MA0029.1	MA0029.1	0.918
MA0030.1	MA0030.1	0.42
MA0031.1	MA0031.1	0.857
MA0035.2	MA0035.2	0.259
MA0038.1	MA0038.1	0.174
MA0039.2	MA0039.2	0.679
MA0040.1	MA0040.1	0.744
MA0041.1	MA0041.1	0.507
MA0042.1	MA0042.1	0.798
MA0043.1	MA0043.1	0.295
MA0046.1	MA0046.1	1.9669e-6
MA0047.2	MA0047.2	0.865
MA0048.1	MA0048.1	0.577
MA0050.1	MA0050.1	0.114
MA0051.1	MA0051.1	0.086
MA0052.1	MA0052.1	0.562
MA0055.1	MA0055.1	0.0426
MA0057.1	MA0057.1	0.724
MA0058.1	MA0058.1	0.0936
MA0059.1	MA0059.1	0.0142
MA0060.1	MA0060.1	0.907
MA0061.1	MA0061.1	0.00383
MA0062.2	MA0062.2	5.46889e-5
MA0065.2	MA0065.2	0.00119
MA0066.1	MA0066.1	0.00692
MA0067.1	MA0067.1	0.146
MA0068.1	MA0068.1	0.00118
MA0069.1	MA0069.1	0.516
MA0070.1	MA0070.1	0.448
MA0071.1	MA0071.1	0.0681
MA0072.1	MA0072.1	0.0758
MA0073.1	MA0073.1	0.366
MA0074.1	MA0074.1	0.442
MA0076.1	MA0076.1	0.00399
MA0077.1	MA0077.1	0.586
MA0078.1	MA0078.1	0.487
MA0079.2	MA0079.2	0.65
MA0080.2	MA0080.2	1.96989e-6
MA0081.1	MA0081.1	0.0335
MA0083.1	MA0083.1	0.0162
MA0084.1	MA0084.1	0.554
MA0087.1	MA0087.1	0.696
MA0088.1	MA0088.1	0.198
MA0090.1	MA0090.1	0.764
MA0091.1	MA0091.1	0.853
MA0092.1	MA0092.1	0.541
MA0093.1	MA0093.1	0.212
MA0099.2	MA0099.2	8.06385e-19
MA0100.1	MA0100.1	0.725
MA0101.1	MA0101.1	0.0092
MA0102.2	MA0102.2	0.249
MA0103.1	MA0103.1	0.352
MA0104.2	MA0104.2	0.0297
MA0105.1	MA0105.1	1.36636e-6
MA0106.1	MA0106.1	0.0194
MA0107.1	MA0107.1	0.00868
MA0108.2	MA0108.2	9.63317e-6
MA0111.1	MA0111.1	0.773
MA0112.2	MA0112.2	6.5125e-5
MA0113.1	MA0113.1	0.296
MA0114.1	MA0114.1	0.0539
MA0115.1	MA0115.1	0.102
MA0116.1	MA0116.1	4.09546e-4
MA0117.1	MA0117.1	0.374
MA0119.1	MA0119.1	0.189
MA0122.1	MA0122.1	0.506
MA0124.1	MA0124.1	0.54
MA0125.1	MA0125.1	0.323
MA0131.1	MA0131.1	0.826
MA0135.1	MA0135.1	0.318
MA0136.1	MA0136.1	5.82489e-11
MA0137.2	MA0137.2	0.857
MA0138.2	MA0138.2	0.883
MA0139.1	MA0139.1	0.0768
MA0140.1	MA0140.1	0.069
MA0141.1	MA0141.1	0.0122
MA0142.1	MA0142.1	0.053
MA0143.1	MA0143.1	0.489
MA0144.1	MA0144.1	0.696
MA0145.1	MA0145.1	0.356
MA0146.1	MA0146.1	0.0903
MA0147.1	MA0147.1	0.0229
MA0148.1	MA0148.1	0.572
MA0149.1	MA0149.1	0.0219
MA0150.1	MA0150.1	2.0405e-7
MA0152.1	MA0152.1	0.117
MA0153.1	MA0153.1	2.64571e-5
MA0154.1	MA0154.1	0.00262
MA0155.1	MA0155.1	0.79
MA0156.1	MA0156.1	1.21135e-5
MA0157.1	MA0157.1	0.238
MA0159.1	MA0159.1	0.0063
MA0160.1	MA0160.1	0.00471
MA0162.1	MA0162.1	0.443
MA0163.1	MA0163.1	3.05532e-8
MA0164.1	MA0164.1	0.455
MA0258.1	MA0258.1	0.0103
MA0259.1	MA0259.1	0.28

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11777

Novel motif	Logo	P-value
1	1	0.0199
10	10	0.0652
100	100	0.337
101	101	0.941
102	102	0.545
103	103	0.0595
104	104	0.507
105	105	0.828
106	106	0.327
107	107	0.877
108	108	0.92
109	109	0.00318
11	11	0.0539
110	110	0.14
111	111	0.0458
112	112	0.127
113	113	0.158
114	114	0.00325
115	115	0.89
116	116	0.795
117	117	0.00651
118	118	0.132
119	119	0.509
12	12	0.479
120	120	0.134
121	121	0.682
122	122	0.442
123	123	0.0489
124	124	0.513
125	125	0.581
126	126	0.21
127	127	0.0762
128	128	0.954
129	129	0.432
13	13	0.0497
130	130	0.782
131	131	0.753
132	132	0.163
133	133	0.338
134	134	0.977
135	135	0.901
136	136	0.259
137	137	0.198
138	138	0.756
139	139	0.16
14	14	0.564
140	140	0.77
141	141	0.0962
142	142	0.852
143	143	0.00641
144	144	0.841
145	145	0.984
146	146	0.38
147	147	0.7
148	148	0.24
149	149	0.346
15	15	0.0331
150	150	0.418
151	151	0.619
152	152	0.313
153	153	0.595
154	154	0.603
155	155	0.58
156	156	0.111
157	157	0.438
158	158	0.61
159	159	0.337
16	16	0.11
160	160	0.425
161	161	0.224
162	162	0.324
163	163	0.711
164	164	0.0722
165	165	0.583
166	166	0.121
167	167	0.0555
168	168	0.158
169	169	0.00808
17	17	0.364
18	18	0.0483
19	19	0.602
2	2	0.668
20	20	0.178
21	21	0.329
22	22	0.256
23	23	0.62
24	24	0.0356
25	25	0.303
26	26	0.0791
27	27	0.596
28	28	0.551
29	29	0.00622
3	3	0.0979
30	30	0.346
31	31	0.899
32	32	0.108
33	33	0.135
34	34	0.572
35	35	0.111
36	36	0.0207
37	37	0.0149
38	38	0.329
39	39	0.821
4	4	0.615
40	40	0.113
41	41	0.0218
42	42	0.203
43	43	0.105
44	44	0.419
45	45	0.947
46	46	0.0613
47	47	0.0359
48	48	0.123
49	49	0.161
5	5	0.237
50	50	0.987
51	51	0.535
52	52	0.676
53	53	0.657
54	54	0.685
55	55	0.06
56	56	0.56
57	57	0.343
58	58	0.339
59	59	0.0926
6	6	0.955
60	60	0.476
61	61	0.105
62	62	0.146
63	63	0.236
64	64	0.403
65	65	0.346
66	66	0.112
67	67	0.325
68	68	0.126
69	69	0.671
7	7	0.18
70	70	0.0192
71	71	0.0164
72	72	0.292
73	73	0.0503
74	74	0.44
75	75	0.00771
76	76	0.337
77	77	0.304
78	78	0.105
79	79	0.455
8	8	0.109
80	80	0.444
81	81	0.366
82	82	0.165
83	83	0.64
84	84	0.671
85	85	0.176
86	86	0.126
87	87	0.00366
88	88	0.703
89	89	0.13
9	9	0.73
90	90	0.0401
91	91	0.818
92	92	0.5
93	93	0.0359
94	94	0.068
95	95	0.0103
96	96	0.29
97	97	0.984
98	98	0.186
99	99	0.674

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11777

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010067 human rectum - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001052 (rectum)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010067 (human rectum - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005076
-|accession_numbers=CAGE;DRX008715;DRR009587;DRZ001012;DRZ002397
+|accession_numbers=CAGE;DRX008715;DRR009587;DRZ001012;DRZ002397;DRZ012362;DRZ013747
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001052,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.48!304.08!HAND2;;chr6:134210243..134210257,+!p1@TCF21!2.20!156.15!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.99!119.62!FOXF1;;chr7:27192185..27192209,-!p1@HOXA3!1.88!74.88!HOXA3;;chr4:174451350..174451363,-!p3@HAND2!1.86!71.23!HAND2;;chr4:41750731..41750748,-!p1@PHOX2B!1.82!65.75!PHOX2B;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.81!63.92!PEG3;;chr1:201979743..201979762,+!p1@ELF3!1.80!62.09!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.75!55.70!ZBED1;;chr13:72441315..72441454,-!p1@DACH1!1.74!105.93!DACH1;;chr19:46800289..46800327,+!p2@HIF3A!1.72!51.14!HIF3A;;chr19:46801639..46801699,+!p1@HIF3A!1.71!50.22!HIF3A;;chr11:71955210..71955227,-!p1@PHOX2A!1.71!50.22!PHOX2A;;chr8:10588010..10588030,-!p1@SOX7!1.67!45.66!SOX7;;chr1:40105299..40105326,-!p1@HEYL!1.64!42.92!HEYL;;chr17:1959369..1959388,+!p2@HIC1!1.63!105.93!HIC1;;chr2:19558373..19558392,-!p1@OSR1!1.62!106.84!OSR1;;chr1:201979703..201979721,+!p2@ELF3!1.61!40.18!ELF3;;chr20:62680984..62680999,-!p1@SOX18!1.59!50.22!SOX18;;chr20:20348740..20348757,+!p1@INSM1!1.58!37.44!INSM1;;chr5:149546334..149546364,+!p1@CDX1!1.58!37.44!CDX1;;chr17:46671108..46671147,-!p1@HOXB5!1.57!36.53!HOXB5;;chr2:145277882..145277967,-!p3@ZEB2!1.55!58.44!ZEB2;;chr10:101292684..101292706,+!p1@NKX2-3!1.55!34.70!NKX2-3;;chr10:131762504..131762555,-!p1@EBF3!1.55!34.70!EBF3;;chr9:128509663..128509715,+!p1@PBX3!1.54!110.49!PBX3;;chr20:42984330..42984364,+!p2@HNF4A!1.53!32.87!HNF4A;;chr6:1389789..1389821,+!p1@FOXF2!1.51!42.92!FOXF2;;chr12:103351444..103351461,+!p1@ASCL1!1.49!30.13!ASCL1;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.39!IRF8;;chr13:72441074..72441172,-!p2@DACH1!1.44!26.48!DACH1;;chr2:5832508..5832524,+!p1@SOX11!1.42!25.57!SOX11;;chr5:50679228..50679288,+!p1@ISL1!1.42!25.57!ISL1;;chr22:38380543..38380569,-!p1@SOX10!1.41!24.66!SOX10;;chr2:177001290..177001315,+!p1@HOXD3!1.41!24.66!HOXD3;;chrX:84498989..84499003,+!p1@ZNF711!1.39!31.96!ZNF711;;chr5:134369879..134369898,-!p2@PITX1!1.39!23.74!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!1.39!23.74!HOXA9;;chr19:46367576..46367592,+!p1@FOXA3!1.39!23.74!FOXA3;;chr7:113726357..113726443,+!p1@FOXP2!1.37!38.35!FOXP2;;chr17:46682321..46682362,-!p1@HOXB6!1.36!21.92!HOXB6;;chr2:176969228..176969260,+!p1@HOXD11!1.36!21.92!HOXD11;;chr18:19749541..19749557,+!p1@GATA6!1.33!62.09!GATA6;;chr2:66662895..66662907,+!p3@MEIS1!1.32!24.66!MEIS1;;chr21:39870339..39870443,-!p1@ERG!1.32!20.09!ERG;;chr2:66662281..66662308,+!p1@MEIS1!1.30!64.83!MEIS1;;chr8:25902876..25902936,-!p1@EBF2!1.30!19.18!EBF2;;chr7:27224842..27224872,-!p1@HOXA11!1.28!18.26!HOXA11;;chr2:122042770..122042785,-!p1@TFCP2L1!1.28!18.26!TFCP2L1;;chr1:214161272..214161322,+!p1@PROX1!1.27!24.66!PROX1;;chr5:158526917..158526932,-!p1@EBF1!1.26!42.01!EBF1;;chr8:55370487..55370503,+!p1@SOX17!1.26!17.35!SOX17;;chr12:115122318..115122331,-!p2@TBX3!1.26!17.35!TBX3;;chr7:113726226..113726245,+!p3@FOXP2!1.24!16.44!FOXP2;;chr2:176969179..176969226,+!p2@HOXD11!1.24!16.44!HOXD11;;chr2:60780753..60780800,-!p1@BCL11A!1.23!77.62!BCL11A;;chr16:79634624..79634642,-!p1@MAF!1.23!62.09!MAF;;chr8:106330656..106330684,+!p1@ZFPM2!1.23!42.01!ZFPM2;;chr7:15726296..15726315,-!p1@MEOX2!1.22!15.52!MEOX2;;chr7:27183263..27183284,-!p2@HOXA5!1.22!15.52!HOXA5;;chr2:176973498..176973524,+!p1@HOXD10!1.22!15.52!HOXD10;;chr4:41750839..41750850,-!p2@PHOX2B!1.22!15.52!PHOX2B;;chr10:70320074..70320106,+!p1@TET1!1.21!30.13!TET1;;chr16:79634595..79634620,-!p2@MAF!1.21!27.39!MAF;;chr20:50159198..50159299,-!p1@NFATC2!1.21!21.92!NFATC2;;chr17:1958388..1958404,+!p1@HIC1!1.20!94.06!HIC1;;chr1:61548374..61548415,+!p4@NFIA!1.20!27.39!NFIA;;chr15:96873984..96873999,+!p3@NR2F2!1.19!105.01!NR2F2;;chr20:51588873..51588953,+!p1@TSHZ2!1.19!19.18!TSHZ2;;chr20:43029862..43029900,+!p1@HNF4A!1.19!14.61!HNF4A;;chr7:27183291..27183324,-!p1@HOXA5!1.19!14.61!HOXA5;;chr2:66662249..66662267,+!p2@MEIS1!1.18!53.88!MEIS1;;chr7:42276787..42276815,-!p1@GLI3!1.18!37.44!GLI3;;chr18:53068911..53068935,-!p4@TCF4!1.17!15.52!TCF4;;chr6:1389824..1389840,+!p3@FOXF2!1.17!13.70!FOXF2;;chr2:5832493..5832507,+!p2@SOX11!1.17!13.70!SOX11;;chr1:2461692..2461710,-!p1@HES5!1.17!13.70!HES5;;chr15:61521417..61521460,-!p2@RORA!1.16!30.13!RORA;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.83!TCF12;;chr5:134369905..134369972,-!p1@PITX1!1.15!20.09!PITX1;;chr19:33793430..33793447,-!p1@CEBPA!1.14!53.88!CEBPA;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!1.14!16.44!PRDM11;;chr13:28543285..28543314,-!p2@CDX2!1.14!12.78!CDX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.14!12.78!MLXIPL;;chr1:164528942..164528964,+!p11@PBX1!1.14!12.78!PBX1;;chr20:30433396..30433414,-!p1@FOXS1!1.14!12.78!FOXS1;;chrX:84499081..84499115,+!p2@ZNF711!1.13!18.26!ZNF711;;chr2:166326200..166326216,+!p1@CSRNP3!1.13!18.26!CSRNP3;;chr1:61548225..61548299,+!p1@NFIA!1.12!159.80!NFIA;;chr3:71355163..71355209,-!p5@FOXP1!1.11!16.44!FOXP1;;chr3:25470156..25470227,+!p2@RARB!1.11!11.87!RARB;;chr4:174450089..174450153,-!p2@HAND2!1.11!11.87!HAND2;;chr11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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001046;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/rectum%252c%2520fetal%252c%2520donor1.CNhs11777.10067-101I4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/rectum%252c%2520fetal%252c%2520donor1.CNhs11777.10067-101I4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/rectum%252c%2520fetal%252c%2520donor1.CNhs11777.10067-101I4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/rectum%252c%2520fetal%252c%2520donor1.CNhs11777.10067-101I4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/rectum%252c%2520fetal%252c%2520donor1.CNhs11777.10067-101I4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10067-101I4
 |is_a=EFO:0002091;;FF:0010067
 |is_obsolete=
 |library_id=CNhs11777
-|library_id_phase_based=1:CNhs11777
+|library_id_phase_based=2:CNhs11777
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10067
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10067
 |name=rectum, fetal, donor1
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11777,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 89: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10067-101I4;search_select_hide=table117:FF:10067-101I4
 }}

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FF:10067-101I4: Difference between revisions

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Latest revision as of 12:19, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0