FF:11420-118F7: Difference between revisions

Latest revision as of 17:59, 4 June 2020

Name:	Hair Follicle Dermal Papilla Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12030
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	hair follicle
dev stage	36 years old adult
sex	female
age	36
cell type	hair follicle, dermal papilla cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1388
catalog number	CA602-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005852

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12030		CAGE		DRX008298		DRR009170

Accession ID Hg19

Library id		BAM		CTSS
CNhs12030		DRZ000595		DRZ001980

Accession ID Hg38

Library id		BAM		CTSS
CNhs12030		DRZ011945		DRZ013330

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005852

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.GTTTCG		sRNA-Seq		DRX037051		DRR041417

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.GTTTCG		DRZ007059

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.159
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0419
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.575
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.349
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.281
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.377
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	1.034
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	1.215
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	1.201
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.479
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.377
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.377
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12030

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.68674e-4
MA0003.1	MA0003.1	0.125
MA0004.1	MA0004.1	0.991
MA0006.1	MA0006.1	0.167
MA0007.1	MA0007.1	0.067
MA0009.1	MA0009.1	0.627
MA0014.1	MA0014.1	0.97
MA0017.1	MA0017.1	0.754
MA0018.2	MA0018.2	0.029
MA0019.1	MA0019.1	0.187
MA0024.1	MA0024.1	0.467
MA0025.1	MA0025.1	0.229
MA0027.1	MA0027.1	0.886
MA0028.1	MA0028.1	0.0541
MA0029.1	MA0029.1	0.791
MA0030.1	MA0030.1	0.255
MA0031.1	MA0031.1	0.00157
MA0035.2	MA0035.2	0.898
MA0038.1	MA0038.1	0.571
MA0039.2	MA0039.2	0.478
MA0040.1	MA0040.1	0.964
MA0041.1	MA0041.1	0.312
MA0042.1	MA0042.1	0.47
MA0043.1	MA0043.1	2.97726e-6
MA0046.1	MA0046.1	0.0146
MA0047.2	MA0047.2	0.592
MA0048.1	MA0048.1	0.288
MA0050.1	MA0050.1	0.273
MA0051.1	MA0051.1	0.573
MA0052.1	MA0052.1	0.00646
MA0055.1	MA0055.1	0.0627
MA0057.1	MA0057.1	0.12
MA0058.1	MA0058.1	0.62
MA0059.1	MA0059.1	0.315
MA0060.1	MA0060.1	0.0104
MA0061.1	MA0061.1	0.545
MA0062.2	MA0062.2	0.00435
MA0065.2	MA0065.2	0.111
MA0066.1	MA0066.1	0.43
MA0067.1	MA0067.1	0.122
MA0068.1	MA0068.1	0.157
MA0069.1	MA0069.1	0.51
MA0070.1	MA0070.1	0.195
MA0071.1	MA0071.1	0.695
MA0072.1	MA0072.1	0.816
MA0073.1	MA0073.1	0.615
MA0074.1	MA0074.1	0.402
MA0076.1	MA0076.1	0.006
MA0077.1	MA0077.1	0.489
MA0078.1	MA0078.1	0.96
MA0079.2	MA0079.2	0.797
MA0080.2	MA0080.2	0.107
MA0081.1	MA0081.1	0.51
MA0083.1	MA0083.1	0.00273
MA0084.1	MA0084.1	0.733
MA0087.1	MA0087.1	0.638
MA0088.1	MA0088.1	0.114
MA0090.1	MA0090.1	0.00922
MA0091.1	MA0091.1	0.0594
MA0092.1	MA0092.1	0.046
MA0093.1	MA0093.1	0.845
MA0099.2	MA0099.2	2.11266e-14
MA0100.1	MA0100.1	0.434
MA0101.1	MA0101.1	0.852
MA0102.2	MA0102.2	0.00215
MA0103.1	MA0103.1	0.184
MA0104.2	MA0104.2	0.652
MA0105.1	MA0105.1	0.245
MA0106.1	MA0106.1	0.0877
MA0107.1	MA0107.1	0.886
MA0108.2	MA0108.2	3.6015e-5
MA0111.1	MA0111.1	0.386
MA0112.2	MA0112.2	0.00455
MA0113.1	MA0113.1	0.285
MA0114.1	MA0114.1	0.351
MA0115.1	MA0115.1	0.508
MA0116.1	MA0116.1	0.122
MA0117.1	MA0117.1	0.506
MA0119.1	MA0119.1	0.141
MA0122.1	MA0122.1	0.681
MA0124.1	MA0124.1	0.901
MA0125.1	MA0125.1	0.973
MA0131.1	MA0131.1	0.172
MA0135.1	MA0135.1	0.0288
MA0136.1	MA0136.1	0.146
MA0137.2	MA0137.2	0.237
MA0138.2	MA0138.2	0.066
MA0139.1	MA0139.1	0.901
MA0140.1	MA0140.1	0.923
MA0141.1	MA0141.1	0.106
MA0142.1	MA0142.1	0.163
MA0143.1	MA0143.1	0.431
MA0144.1	MA0144.1	0.936
MA0145.1	MA0145.1	0.154
MA0146.1	MA0146.1	0.0642
MA0147.1	MA0147.1	0.985
MA0148.1	MA0148.1	0.614
MA0149.1	MA0149.1	0.137
MA0150.1	MA0150.1	0.00625
MA0152.1	MA0152.1	0.531
MA0153.1	MA0153.1	0.144
MA0154.1	MA0154.1	0.0813
MA0155.1	MA0155.1	0.133
MA0156.1	MA0156.1	0.262
MA0157.1	MA0157.1	0.164
MA0159.1	MA0159.1	0.671
MA0160.1	MA0160.1	0.071
MA0162.1	MA0162.1	0.0475
MA0163.1	MA0163.1	0.0474
MA0164.1	MA0164.1	0.547
MA0258.1	MA0258.1	0.027
MA0259.1	MA0259.1	0.668

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12030

Novel motif	Logo	P-value
1	1	0.765
10	10	0.857
100	100	0.933
101	101	0.227
102	102	0.827
103	103	0.807
104	104	0.544
105	105	0.105
106	106	0.0292
107	107	0.0129
108	108	0.909
109	109	0.0284
11	11	0.0803
110	110	0.166
111	111	0.624
112	112	0.671
113	113	0.183
114	114	0.333
115	115	0.856
116	116	0.149
117	117	0.476
118	118	0.898
119	119	0.156
12	12	0.161
120	120	0.264
121	121	0.375
122	122	0.44
123	123	0.411
124	124	0.481
125	125	0.868
126	126	0.438
127	127	0.108
128	128	0.191
129	129	0.706
13	13	0.788
130	130	0.00998
131	131	0.979
132	132	0.939
133	133	0.785
134	134	0.73
135	135	0.161
136	136	0.509
137	137	0.493
138	138	0.815
139	139	0.522
14	14	0.575
140	140	0.975
141	141	0.663
142	142	0.00706
143	143	0.0255
144	144	0.891
145	145	0.179
146	146	0.0444
147	147	0.244
148	148	0.34
149	149	0.202
15	15	0.567
150	150	0.195
151	151	0.55
152	152	0.0431
153	153	0.354
154	154	0.64
155	155	0.322
156	156	0.322
157	157	0.998
158	158	0.0975
159	159	0.506
16	16	0.209
160	160	0.0563
161	161	0.635
162	162	0.0209
163	163	0.467
164	164	0.622
165	165	0.222
166	166	0.138
167	167	0.487
168	168	0.774
169	169	0.0371
17	17	0.147
18	18	0.262
19	19	0.0554
2	2	0.277
20	20	0.287
21	21	0.738
22	22	0.0824
23	23	0.201
24	24	0.179
25	25	0.597
26	26	0.00315
27	27	0.293
28	28	0.263
29	29	0.767
3	3	0.634
30	30	0.168
31	31	0.511
32	32	0.0124
33	33	0.25
34	34	0.29
35	35	0.854
36	36	0.831
37	37	0.227
38	38	0.643
39	39	0.56
4	4	0.686
40	40	0.0493
41	41	0.693
42	42	0.752
43	43	0.132
44	44	0.476
45	45	0.237
46	46	0.0617
47	47	0.501
48	48	0.167
49	49	0.263
5	5	0.863
50	50	0.365
51	51	0.452
52	52	0.205
53	53	0.962
54	54	0.659
55	55	0.672
56	56	0.511
57	57	0.339
58	58	0.959
59	59	0.0246
6	6	0.988
60	60	0.332
61	61	0.425
62	62	0.59
63	63	0.217
64	64	0.313
65	65	0.167
66	66	0.279
67	67	0.753
68	68	0.403
69	69	0.106
7	7	0.851
70	70	0.876
71	71	0.112
72	72	0.955
73	73	0.0377
74	74	0.743
75	75	0.863
76	76	0.55
77	77	0.0116
78	78	0.652
79	79	0.442
8	8	0.0833
80	80	0.799
81	81	0.675
82	82	0.496
83	83	0.448
84	84	0.203
85	85	0.119
86	86	0.842
87	87	0.0324
88	88	0.191
89	89	0.515
9	9	0.0963
90	90	0.132
91	91	0.0487
92	92	0.887
93	93	0.784
94	94	0.387
95	95	0.122
96	96	0.348
97	97	0.412
98	98	0.131
99	99	0.0109

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12030

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000071 human hair follicle dermal papilla cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002559 (hair follicle cell)
0000346 (hair follicle dermal papilla cell)
1000428 (stem cell of epidermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0000412 (dermal papilla)
0002067 (dermis)
0001992 (papillary layer of dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000071 (human hair follicle dermal papilla cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008190
+|DRA_sample_Accession=CAGE@SAMD00005852
-|accession_numbers=CAGE;DRX008298;DRR009170;DRZ000595;DRZ001980
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005852
+|accession_numbers=CAGE;DRX008298;DRR009170;DRZ000595;DRZ001980;DRZ011945;DRZ013330
+|accession_numbers_RNASeq=sRNA-Seq;DRX037051;DRR041417;DRZ007059
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0000412,UBERON:0002067,UBERON:0001992,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002559,CL:0000346,CL:1000428
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:55204351..55204377,+!p1@TFAP2C!2.11!161.62!TFAP2C;;chr7:19157248..19157268,-!p1@TWIST1!1.85!186.48!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.78!59.40!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!71.83!PRRX2;;chr6:34204921..34204939,+!p3@HMGA1!1.70!1403.45!HMGA1;;chr11:65686802..65686818,+!p6@DRAP1!1.54!58.02!DRAP1;;chr4:81118647..81118666,+!p1@PRDM8!1.53!42.82!PRDM8;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.15!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!146.42!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.48!33.15!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.01!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.33!55.25!OSR1;;chr2:119605214..119605230,-!p1@EN1!1.31!19.34!EN1;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.34!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!1.30!84.26!FOXD1;;chr5:321810..321877,+!p1@AHRR!1.27!55.25!AHRR;;chr11:65667846..65667868,-!p1@FOSL1!1.25!426.84!FOSL1;;chr12:53614115..53614154,-!p1@RARG!1.24!87.03!RARG;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.39!RUNX3;;chr3:147127177..147127194,+!p2@ZIC1!1.24!16.58!ZIC1;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.54!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!1.19!16.58!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.18!53.87!FOSL1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.18!15.19!GLIS1;;chr11:65687362..65687436,+!p3@DRAP1!1.16!60.78!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.72!CREB3L1;;chr6:34204973..34204990,+!p4@HMGA1!1.10!154.71!HMGA1;;chr3:157823517..157823562,-!p1@SHOX2!1.10!12.43!SHOX2;;chr4:4861385..4861398,+!p1@MSX1!1.08!33.15!MSX1;;chr11:44331576..44331650,-!p1@ALX4!1.08!11.05!ALX4;;chr5:2751762..2751784,-!p1@IRX2!1.08!11.05!IRX2;;chr1:170632250..170632277,+!p7@PRRX1!1.08!11.05!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!1.07!13.81!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!1.04!11.05!HOXB2;;chr2:102091566..102091581,-!p1@RFX8!1.03!9.67!RFX8;;chr5:174151612..174151633,+!p2@MSX2!1.03!9.67!MSX2;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.05!HOXB2;;chr2:239756671..239756732,+!p1@TWIST2!1.01!30.39!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.01!TBX2;;chr17:41622925..41622976,-!p3@ETV4!1.01!13.81!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.02!SNAI2;;chr19:31840130..31840160,-!p2@TSHZ3!0.99!13.81!TSHZ3;;chr11:46299186..46299195,+!p3@CREB3L1!0.98!9.67!CREB3L1;;chr6:34204672..34204692,+!p1@HMGA1!0.97!958.66!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.97!9.67!BNC1;;chr2:176994919..176994931,+!p2@HOXD8!0.97!8.29!HOXD8;;chr2:96012397..96012417,+!p3@KCNIP3!0.97!8.29!KCNIP3;;chr3:147111198..147111225,+!p4@ZIC1!0.97!8.29!ZIC1;;chr9:35732647..35732678,+!p2@CREB3!0.96!46.97!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.67!FOXF1;;chr10:77161133..77161176,-!p3@ZNF503!0.93!16.58!ZNF503;;chr20:42543506..42543549,+!p2@TOX2!0.92!17.96!TOX2;;chr5:72744445..72744466,-!p2@FOXD1!0.92!12.43!FOXD1;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.43!TWIST2;;chr5:134369905..134369972,-!p1@PITX1!0.91!11.05!PITX1;;chr17:46675420..46675465,-!p3@HOXB6!0.91!8.29!HOXB6;;chr16:31076332..31076388,-!p3@ZNF668!0.90!6.91!ZNF668;;chr5:3595977..3595999,+!p1@IRX1!0.90!6.91!IRX1;;chr7:35293685..35293718,-!p1@TBX20!0.90!6.91!TBX20;;chr1:170633058..170633084,+!p5@PRRX1!0.90!6.91!PRRX1;;chr2:114036488..114036504,-!p1@PAX8!0.90!6.91!PAX8;;chr2:176994408..176994492,+!p1@HOXD8!0.90!6.91!HOXD8;;chr3:25470156..25470227,+!p2@RARB!0.90!6.91!RARB;;chr14:24837368..24837401,+!p1@NFATC4!0.89!16.58!NFATC4;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.67!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.91!PRRX1;;chr11:65687158..65687216,+!p4@DRAP1!0.85!37.30!DRAP1;;chr12:53614155..53614187,-!p3@RARG!0.85!12.43!RARG;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.67!HOXB2;;chr17:46621101..46621143,-!p7@HOXB2!0.85!8.29!HOXB2;;chr1:149858461..149858479,+!p1@BOLA1!0.84!2498.86!BOLA1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.91!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!0.82!9.67!TFAP2A;;chr12:124873357..124873401,-!p1@NCOR2!0.81!69.07!NCOR2;;chr2:200322654..200322707,-!p2@SATB2!0.81!8.29!SATB2;;chr2:177001290..177001315,+!p1@HOXD3!0.81!5.53!HOXD3;;chr5:2751785..2751808,-!p2@IRX2!0.81!5.53!IRX2;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.53!IRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.81!5.53!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.81!5.53!RUNX3;;chr20:55205825..55205847,+!p2@TFAP2C!0.81!5.53!TFAP2C;;chr11:65668011..65668020,-!p3@FOSL1!0.81!5.53!FOSL1;;chr12:2986275..2986363,-!p1@FOXM1!0.80!58.02!FOXM1;;chr20:42543441..42543497,+!p1@TOX2!0.79!24.86!TOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.81!TWIST1;;chr17:38256799..38256815,-!p3@NR1D1!0.78!9.67!NR1D1;;chr17:59477275..59477286,+!p3@TBX2!0.78!6.91!TBX2;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.86!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.77!8.29!ETV4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.76!377.11!TAX1BP3;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.10!ETV4;;chr7:150946015..150946070,-!p3@SMARCD3!0.76!11.05!SMARCD3;;chr7:44143925..44143970,+!p1@AEBP1!0.75!114.65!AEBP1;;chr17:46622070..46622109,-!p1@HOXB2!0.75!11.05!HOXB2;;chr15:57511609..57511651,+!p2@TCF12!0.75!8.29!TCF12;;chr19:17356436..17356481,-!p3@NR2F6!0.75!8.29!NR2F6;;chr3:25469724..25469773,+!p1@RARB!0.75!6.91!RARB;;chr4:81104985..81105005,+!p4@PRDM8!0.74!5.53!PRDM8;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!6.91!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.73!6.91!ETV4;;chr6:10415276..10415341,-!p2@TFAP2A!0.73!5.53!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.08!SNAI2;;chr2:172967621..172967637,-!p1@DLX2!0.72!12.43!DLX2;;chr20:39317868..39317884,-!p1@MAFB!0.71!55.25!MAFB;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.20!TCF19;;chr8:72756667..72756736,-!p2@MSC!0.71!6.91!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.71!4.14!PITX1;;chr6:134210243..134210257,+!p1@TCF21!0.71!4.14!TCF21;;chr8:93074803..93074845,-!p1@RUNX1T1!0.71!4.14!RUNX1T1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.71!4.14!RUNX1T1;;chr19:50542543..50542548,+!p2@ZNF473!0.71!4.14!ZNF473;;chr1:170632439..170632465,+!p11@PRRX1!0.71!4.14!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.71!4.14!FOXS1;;chr15:80843472..80843480,+!p22@ARNT2!0.71!4.14!ARNT2;;chr15:80843484..80843499,+!p5@ARNT2!0.71!4.14!ARNT2;;chr16:54320322..54320343,-!p7@IRX3!0.71!4.14!IRX3;;chr16:86612320..86612394,+!p1@FOXL1!0.71!4.14!FOXL1;;chr19:31840278..31840300,-!p5@TSHZ3!0.71!4.14!TSHZ3;;chr2:119605253..119605264,-!p5@EN1!0.71!4.14!EN1;;chr2:176987463..176987479,+!p2@HOXD9!0.71!4.14!HOXD9;;chr2:66662510..66662521,+!p6@MEIS1!0.71!4.14!MEIS1;;chr3:157824001..157824078,-!p2@SHOX2!0.71!4.14!SHOX2;;chr4:299227..299272,-!p1@ZNF732!0.71!4.14!ZNF732;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.14!TBX3;;chrX:136648643..136648711,+!p2@ZIC3!0.71!4.14!ZIC3;;chr20:30193083..30193098,+!p1@ID1!0.70!372.96!ID1;;chr9:35732592..35732640,+!p1@CREB3!0.69!59.40!CREB3;;chr5:174151553..174151610,+!p1@MSX2!0.69!6.91!MSX2;;chr19:50431999..50432026,+!p4@ATF5!0.69!5.53!ATF5;;chr11:65687243..65687276,+!p8@DRAP1!0.69!5.53!DRAP1;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.53!ZNF503;;chr1:8938709..8938720,-!p3@ENO1!0.66!200.30!ENO1;;chr5:176738887..176738934,-!p1@MXD3!0.66!27.63!MXD3;;chr12:2986206..2986258,-!p2@FOXM1!0.66!24.86!FOXM1;;chr21:47063625..47063658,+!p1@PCBP3!0.66!17.96!PCBP3;;chr2:101591314..101591333,+!p2@NPAS2!0.66!4.14!NPAS2;;chr6:45296048..45296082,+!p1@RUNX2!0.66!4.14!RUNX2;;chr20:42295713..42295738,+!p2@MYBL2!0.65!23.48!MYBL2;;chr12:53856284..53856299,+!p3@PCBP2!0.65!11.05!PCBP2;;chr20:39946400..39946423,-!p3@ZHX3!0.65!6.91!ZHX3;;chr9:3526360..3526421,-!p5@RFX3!0.64!6.91!RFX3;;chr20:39946361..39946379,-!p2@ZHX3!0.63!11.05!ZHX3;;chr12:66218003..66218018,+!p9@HMGA2!0.63!4.14!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.77!TBX3;;chr2:208031542..208031595,-!p2@KLF7!0.62!26.25!KLF7;;chr2:28616358..28616380,+!p3@FOSL2!0.62!19.34!FOSL2;;chr19:46272462..46272562,-!p1@SIX5!0.62!15.19!SIX5;;chr7:42276787..42276815,-!p1@GLI3!0.62!9.67!GLI3;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.67!HOXB2;;chr5:72744562..72744573,-!p3@FOXD1!0.62!4.14!FOXD1;;chr1:8938766..8938774,-!p2@ENO1!0.61!256.93!ENO1;;chr12:124873852..124873881,-!p3@NCOR2!0.61!22.10!NCOR2;;chr3:150126759..150126784,+!p2@TSC22D2!0.61!16.58!TSC22D2;;chr14:73360799..73360817,-!p1@DPF3!0.61!12.43!DPF3;;chr19:926001..926046,+!p1@ARID3A!0.61!12.43!ARID3A;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.53!GLI2;;chr9:117150303..117150312,-!p3@AKNA!0.61!4.14!AKNA;;chr19:18392274..18392286,-!p3@JUND!0.60!23.48!JUND;;chr20:32274179..32274213,-!p1@E2F1!0.60!23.48!E2F1;;chr11:65686952..65686975,+!p5@DRAP1!0.60!19.34!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.59!58.02!MYBL2;;chr19:1592828..1592910,-!p2@MBD3!0.59!27.63!MBD3;;chr17:1958388..1958404,+!p1@HIC1!0.59!22.10!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.59!5.53!TBX2;;chr19:7584815..7584829,+!p2@ZNF358!0.59!4.14!ZNF358;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.77!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.58!17.96!ETV1;;chr5:3595934..3595957,+!p2@IRX1!0.58!2.76!IRX1;;chr6:27356595..27356611,+!p6@ZNF391!0.58!2.76!ZNF391;;chr8:72756380..72756427,-!p8@MSC!0.58!2.76!MSC;;chr10:64134045..64134083,+!p3@ZNF365!0.58!2.76!ZNF365;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.76!CREB3L1;;chr12:53613935..53613947,-!p8@RARG!0.58!2.76!RARG;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.76!HMGA2;;chrX:136648279..136648295,+!p1@ZIC3!0.58!2.76!ZIC3;;chr2:5832508..5832524,+!p1@SOX11!0.58!2.76!SOX11;;chr2:74730087..74730102,-!p4@LBX2!0.58!2.76!LBX2;;chr2:96012353..96012378,+!p4@KCNIP3!0.58!2.76!KCNIP3;;chr3:114343039..114343085,-!p8@ZBTB20!0.58!2.76!ZBTB20;;chr3:141121820..141121838,+!p9@ZBTB38!0.58!2.76!ZBTB38;;chr3:147111231..147111281,+!p3@ZIC1!0.58!2.76!ZIC1;;chr3:147114993..147115013,-!p5@ZIC4!0.58!2.76!ZIC4;;chr3:147139053..147139112,+!p5@ZIC1!0.58!2.76!ZIC1;;chr4:109089095..109089144,-!p6@LEF1!0.58!2.76!LEF1;;chr4:111558135..111558198,-!p2@PITX2!0.58!2.76!PITX2;;chr19:38183228..38183242,-!p4@ZNF781!0.58!2.76!ZNF781;;chr19:9420326..942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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000346;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000221
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11420-118F7
 |is_a=EFO:0002091;;FF:0000071
 |is_obsolete=
 |library_id=CNhs12030
-|library_id_phase_based=1:CNhs12030
+|library_id_phase_based=2:CNhs12030
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11420
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTTTCG.11420
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11420
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTTTCG.11420
 |name=Hair Follicle Dermal Papilla Cells, donor3
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12030,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10004,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 67: / Line 82: @@
 |rna_tube_id=118F7
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10004.GTTTCG
 |sample_age=36
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
 |top_motifs=HES1:2.42005990871;GTF2A1,2:1.78654914346;POU2F1..3:1.63711116942;ZNF238:1.5581711626;PBX1:1.46022563213;PAX1,9:1.07160132294;TP53:1.02170092604;GFI1:1.0029707412;TFAP2{A,C}:0.997400426144;GLI1..3:0.989492028346;ESR1:0.984358056655;RXR{A,B,G}:0.922935565593;SRF:0.915914238441;HMX1:0.7984839588;ZNF423:0.791893579847;TLX1..3_NFIC{dimer}:0.766881236131;EBF1:0.742842985416;TEAD1:0.734644050603;TBP:0.716873558445;IKZF1:0.715602590232;NR5A1,2:0.691915213779;ZBTB6:0.68487122033;HAND1,2:0.673815506873;GFI1B:0.66291664761;TFCP2:0.60136991823;TFAP4:0.585656280421;MTF1:0.584436807476;TOPORS:0.56298977157;GZF1:0.557881604574;HOX{A5,B5}:0.552470088763;BACH2:0.524112485914;ZNF148:0.513776995513;NFE2L1:0.46755873109;SOX{8,9,10}:0.449485442386;SPZ1:0.434481880377;TFDP1:0.41619167011;NFE2:0.407074212289;FOS_FOS{B,L1}_JUN{B,D}:0.402744413631;TFAP2B:0.359950552332;LEF1_TCF7_TCF7L1,2:0.358627488429;ZIC1..3:0.358412980144;HIC1:0.351764318212;ESRRA:0.344386861646;STAT5{A,B}:0.341239276632;AR:0.327102942637;EN1,2:0.306908500624;PRRX1,2:0.296653910925;NFE2L2:0.296499126758;NR1H4:0.284570988788;PAX8:0.276452618734;NR3C1:0.275471456412;E2F1..5:0.272897445376;RXRA_VDR{dimer}:0.267878194992;GTF2I:0.220676975542;NFIX:0.218340384718;CRX:0.188391898554;PPARG:0.185464832325;SOX17:0.184976868726;HOXA9_MEIS1:0.17424025705;ONECUT1,2:0.173413297119;NFATC1..3:0.171206475987;POU6F1:0.163779791767;NFY{A,B,C}:0.161504122746;NANOG:0.15283986282;TAL1_TCF{3,4,12}:0.143989373704;HNF1A:0.143386929727;TBX4,5:0.12474262446;MEF2{A,B,C,D}:0.119897297138;CDC5L:0.0812346758709;REST:0.0656714557499;UFEwm:0.0318325950991;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.031637448948;MYB:0.0181406163523;XCPE1{core}:0.00663620036334;YY1:0.00352137861382;ALX4:0.00171528078355;POU3F1..4:0.000431483319529;NANOG{mouse}:-0.0200606171773;FOXL1:-0.0246237141523;RUNX1..3:-0.0482354405079;bHLH_family:-0.0490874495308;MTE{core}:-0.0629971217307;NKX3-2:-0.0667040417008;XBP1:-0.0722023756464;MAFB:-0.0780453052222;PAX5:-0.090149184246;FOSL2:-0.0916988228512;KLF4:-0.105628613848;LHX3,4:-0.11965948286;ETS1,2:-0.124233192445;NKX2-3_NKX2-5:-0.127676644249;MYBL2:-0.150276917926;JUN:-0.152241343745;HLF:-0.161528431619;NFKB1_REL_RELA:-0.164805304686;HOX{A6,A7,B6,B7}:-0.166155190967;MZF1:-0.168150994253;NR6A1:-0.170583666653;AIRE:-0.172636192384;STAT2,4,6:-0.174215394821;SP1:-0.181341954514;NKX2-2,8:-0.194115218504;ATF6:-0.201665180466;HNF4A_NR2F1,2:-0.204064418684;ARID5B:-0.217064373742;DBP:-0.247131058316;SPIB:-0.261339665438;PAX2:-0.273186998715;POU5F1:-0.2766708434;HSF1,2:-0.301086033872;MED-1{core}:-0.318716820115;POU1F1:-0.32068731709;GATA6:-0.320756342835;PATZ1:-0.325493607939;PAX3,7:-0.334743274312;MAZ:-0.343367514695;IRF1,2:-0.390549675354;EGR1..3:-0.405108105275;RFX2..5_RFXANK_RFXAP:-0.430327941334;DMAP1_NCOR{1,2}_SMARC:-0.432669698989;FOX{F1,F2,J1}:-0.439306355593;PRDM1:-0.44086027498;RREB1:-0.456684455167;ZNF143:-0.462702054357;CUX2:-0.474562665339;SPI1:-0.481761931762;FOXM1:-0.485835812267;TGIF1:-0.491678778705;CEBPA,B_DDIT3:-0.497491137247;GCM1,2:-0.497895320836;RFX1:-0.534112748803;SNAI1..3:-0.540134543739;HIF1A:-0.562284951897;FOXA2:-0.595296084943;FOXO1,3,4:-0.599484543555;ELF1,2,4:-0.601272258296;SOX5:-0.602443164378;OCT4_SOX2{dimer}:-0.615605780707;T:-0.616399539399;PAX6:-0.640993325544;NKX2-1,4:-0.652912320752;VSX1,2:-0.663787771192;AHR_ARNT_ARNT2:-0.664163717773;ATF5_CREB3:-0.672048851322;MYFfamily:-0.696768048013;LMO2:-0.698162813458;ELK1,4_GABP{A,B1}:-0.6983033086;NHLH1,2:-0.706157996891;CREB1:-0.706730371356;ALX1:-0.715808264001;NFIL3:-0.717866737772;ZNF384:-0.758656274736;ZFP161:-0.767762904915;SOX2:-0.787295528773;HBP1_HMGB_SSRP1_UBTF:-0.789760706959;NRF1:-0.802867739963;EP300:-0.805691607971;PITX1..3:-0.811067927027;SMAD1..7,9:-0.816093131224;GATA4:-0.830185105916;HOX{A4,D4}:-0.859160178589;IRF7:-0.866243765504;ZEB1:-0.872854026589;ADNP_IRX_SIX_ZHX:-0.936870676384;FOX{I1,J2}:-0.951479102065;RORA:-0.963788820153;BREu{core}:-0.970746565629;NKX3-1:-0.974524046913;MYOD1:-0.980284957666;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01390080512;NKX6-1,2:-1.01777631111;RBPJ:-1.03170202597;FOXQ1:-1.0653528127;TLX2:-1.09346439886;PDX1:-1.09942653748;FOX{D1,D2}:-1.19139812716;ATF2:-1.23083024342;ATF4:-1.23498929023;FOXP3:-1.25015397484;STAT1,3:-1.5033953596;BPTF:-1.53599061932;HMGA1,2:-1.56167261322;EVI1:-1.61337032772;ZBTB16:-1.6287458623;IKZF2:-1.64868240304;SREBF1,2:-1.66904713576;PAX4:-1.77433245149;FOXN1:-1.83656949927;CDX1,2,4:-1.90683830211;FOXP1:-2.05678304904;FOXD3:-2.12797111309;TEF:-2.37861532231
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11420-118F7;search_select_hide=table117:FF:11420-118F7
 }}

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