FF:10600-108E6: Difference between revisions

Latest revision as of 14:30, 3 June 2020

Name:	myxofibrosarcoma cell line:MFH-ino
Species:	Human (Homo sapiens)
Library ID:	CNhs11729
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ANATOMICAL SYSTEM
dev stage	NA
sex	female
age	unknown
cell type	fibroblast
cell line	MFH-ino
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004833

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11729		CAGE		DRX007958		DRR008830

Accession ID Hg19

Library id		BAM		CTSS
CNhs11729		DRZ000255		DRZ001640

Accession ID Hg38

Library id		BAM		CTSS
CNhs11729		DRZ011605		DRZ012990

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0439
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.46
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.195
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-8.558604e-4
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0502
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0483
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0346
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0957
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.357
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.423
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.147
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11729

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.546
MA0003.1	MA0003.1	0.0778
MA0004.1	MA0004.1	0.505
MA0006.1	MA0006.1	0.857
MA0007.1	MA0007.1	0.914
MA0009.1	MA0009.1	0.0355
MA0014.1	MA0014.1	0.881
MA0017.1	MA0017.1	0.305
MA0018.2	MA0018.2	0.181
MA0019.1	MA0019.1	0.132
MA0024.1	MA0024.1	1.25114e-6
MA0025.1	MA0025.1	0.16
MA0027.1	MA0027.1	0.732
MA0028.1	MA0028.1	0.763
MA0029.1	MA0029.1	0.0948
MA0030.1	MA0030.1	0.958
MA0031.1	MA0031.1	0.597
MA0035.2	MA0035.2	0.894
MA0038.1	MA0038.1	0.00926
MA0039.2	MA0039.2	0.911
MA0040.1	MA0040.1	0.968
MA0041.1	MA0041.1	0.31
MA0042.1	MA0042.1	0.192
MA0043.1	MA0043.1	0.0107
MA0046.1	MA0046.1	0.986
MA0047.2	MA0047.2	0.691
MA0048.1	MA0048.1	0.0187
MA0050.1	MA0050.1	0.755
MA0051.1	MA0051.1	0.431
MA0052.1	MA0052.1	0.0807
MA0055.1	MA0055.1	0.227
MA0057.1	MA0057.1	0.524
MA0058.1	MA0058.1	0.0873
MA0059.1	MA0059.1	0.506
MA0060.1	MA0060.1	1.22086e-9
MA0061.1	MA0061.1	8.85966e-4
MA0062.2	MA0062.2	0.0408
MA0065.2	MA0065.2	0.09
MA0066.1	MA0066.1	0.856
MA0067.1	MA0067.1	0.447
MA0068.1	MA0068.1	0.0287
MA0069.1	MA0069.1	0.647
MA0070.1	MA0070.1	0.0495
MA0071.1	MA0071.1	0.587
MA0072.1	MA0072.1	0.656
MA0073.1	MA0073.1	0.323
MA0074.1	MA0074.1	0.262
MA0076.1	MA0076.1	0.686
MA0077.1	MA0077.1	0.266
MA0078.1	MA0078.1	0.82
MA0079.2	MA0079.2	0.622
MA0080.2	MA0080.2	1.67718e-9
MA0081.1	MA0081.1	0.00424
MA0083.1	MA0083.1	0.109
MA0084.1	MA0084.1	0.836
MA0087.1	MA0087.1	0.712
MA0088.1	MA0088.1	0.0156
MA0090.1	MA0090.1	7.72903e-6
MA0091.1	MA0091.1	0.667
MA0092.1	MA0092.1	0.975
MA0093.1	MA0093.1	0.499
MA0099.2	MA0099.2	7.275e-8
MA0100.1	MA0100.1	0.588
MA0101.1	MA0101.1	0.143
MA0102.2	MA0102.2	0.00251
MA0103.1	MA0103.1	0.00293
MA0104.2	MA0104.2	0.492
MA0105.1	MA0105.1	5.99065e-4
MA0106.1	MA0106.1	0.669
MA0107.1	MA0107.1	0.0292
MA0108.2	MA0108.2	0.11
MA0111.1	MA0111.1	0.923
MA0112.2	MA0112.2	0.0698
MA0113.1	MA0113.1	0.979
MA0114.1	MA0114.1	0.589
MA0115.1	MA0115.1	0.727
MA0116.1	MA0116.1	0.0474
MA0117.1	MA0117.1	0.823
MA0119.1	MA0119.1	0.446
MA0122.1	MA0122.1	0.917
MA0124.1	MA0124.1	0.632
MA0125.1	MA0125.1	0.0989
MA0131.1	MA0131.1	0.29
MA0135.1	MA0135.1	0.694
MA0136.1	MA0136.1	6.99984e-10
MA0137.2	MA0137.2	0.135
MA0138.2	MA0138.2	0.0414
MA0139.1	MA0139.1	0.522
MA0140.1	MA0140.1	0.275
MA0141.1	MA0141.1	0.0414
MA0142.1	MA0142.1	0.105
MA0143.1	MA0143.1	0.904
MA0144.1	MA0144.1	0.956
MA0145.1	MA0145.1	0.265
MA0146.1	MA0146.1	0.778
MA0147.1	MA0147.1	0.811
MA0148.1	MA0148.1	0.596
MA0149.1	MA0149.1	0.509
MA0150.1	MA0150.1	0.889
MA0152.1	MA0152.1	0.479
MA0153.1	MA0153.1	0.913
MA0154.1	MA0154.1	0.00863
MA0155.1	MA0155.1	0.105
MA0156.1	MA0156.1	0.00194
MA0157.1	MA0157.1	0.682
MA0159.1	MA0159.1	0.00388
MA0160.1	MA0160.1	0.79
MA0162.1	MA0162.1	0.943
MA0163.1	MA0163.1	0.0023
MA0164.1	MA0164.1	0.629
MA0258.1	MA0258.1	0.023
MA0259.1	MA0259.1	0.491

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11729

Novel motif	Logo	P-value
1	1	0.883
10	10	0.296
100	100	0.96
101	101	0.362
102	102	0.317
103	103	0.458
104	104	0.967
105	105	0.51
106	106	0.0567
107	107	0.318
108	108	0.371
109	109	0.184
11	11	0.176
110	110	0.386
111	111	0.945
112	112	0.218
113	113	0.324
114	114	0.395
115	115	0.436
116	116	0.871
117	117	0.235
118	118	0.574
119	119	0.442
12	12	0.0439
120	120	0.104
121	121	0.939
122	122	0.582
123	123	0.243
124	124	0.687
125	125	0.244
126	126	0.154
127	127	0.425
128	128	0.277
129	129	0.71
13	13	0.212
130	130	0.084
131	131	0.523
132	132	0.487
133	133	0.841
134	134	0.95
135	135	0.0203
136	136	0.837
137	137	0.147
138	138	0.797
139	139	0.0132
14	14	0.323
140	140	0.211
141	141	0.344
142	142	0.302
143	143	0.463
144	144	0.316
145	145	0.804
146	146	0.314
147	147	0.4
148	148	0.00808
149	149	0.0252
15	15	0.983
150	150	0.559
151	151	0.353
152	152	0.408
153	153	0.159
154	154	0.494
155	155	0.0854
156	156	0.687
157	157	0.677
158	158	0.0832
159	159	0.618
16	16	0.653
160	160	0.947
161	161	0.206
162	162	0.598
163	163	0.556
164	164	0.47
165	165	0.845
166	166	0.713
167	167	0.884
168	168	0.377
169	169	0.318
17	17	0.579
18	18	0.742
19	19	0.246
2	2	0.207
20	20	0.824
21	21	0.637
22	22	0.741
23	23	0.281
24	24	0.135
25	25	0.975
26	26	0.891
27	27	0.356
28	28	0.972
29	29	0.33
3	3	0.0877
30	30	0.324
31	31	0.219
32	32	0.328
33	33	0.201
34	34	0.152
35	35	0.173
36	36	0.172
37	37	0.344
38	38	0.481
39	39	0.33
4	4	0.341
40	40	0.262
41	41	0.534
42	42	0.717
43	43	0.235
44	44	0.015
45	45	0.882
46	46	0.908
47	47	0.408
48	48	0.242
49	49	0.862
5	5	0.817
50	50	0.563
51	51	0.947
52	52	0.694
53	53	0.52
54	54	0.376
55	55	0.926
56	56	0.872
57	57	0.242
58	58	0.471
59	59	0.0811
6	6	0.405
60	60	0.16
61	61	0.523
62	62	0.866
63	63	0.129
64	64	0.556
65	65	0.18
66	66	0.00111
67	67	0.961
68	68	0.195
69	69	0.98
7	7	0.359
70	70	0.0203
71	71	0.283
72	72	0.238
73	73	0.394
74	74	0.475
75	75	0.17
76	76	0.377
77	77	0.0681
78	78	0.598
79	79	0.00389
8	8	0.944
80	80	0.961
81	81	0.924
82	82	0.0314
83	83	0.233
84	84	0.0046
85	85	0.00386
86	86	0.112
87	87	0.713
88	88	0.357
89	89	0.714
9	9	0.943
90	90	0.87
91	91	0.0266
92	92	0.236
93	93	0.726
94	94	0.875
95	95	0.333
96	96	0.459
97	97	0.126
98	98	0.046
99	99	0.425

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11729

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002620 skin fibroblast
DOID:1907 malignant fibroxanthoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100460 fibrosarcoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
4231 (histiocytoma)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
1907 (malignant fibroxanthoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007852
+|DRA_sample_Accession=CAGE@SAMD00004833
-|accession_numbers=CAGE;DRX007958;DRR008830;DRZ000255;DRZ001640
+|accession_numbers=CAGE;DRX007958;DRR008830;DRZ000255;DRZ001640;DRZ011605;DRZ012990
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!2.12!156.63!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.90!128.83!TFAP2A;;chr1:197886461..197886558,+!p1@LHX9!1.72!51.64!LHX9;;chr2:176969228..176969260,+!p1@HOXD11!1.54!33.48!HOXD11;;chr8:106330656..106330684,+!p1@ZFPM2!1.53!84.56!ZFPM2;;chr2:223163706..223163730,-!p1@PAX3!1.51!31.21!PAX3;;chr17:7492684..7492778,-!p2@SOX15!1.50!63.56!SOX15;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.57!ZBED1;;chr6:10412576..10412599,-!p5@TFAP2A!1.34!21.00!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!1.32!19.86!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.28!21.00!GATA3;;chr8:106330696..106330719,+!p2@ZFPM2!1.27!22.13!ZFPM2;;chr2:176969179..176969226,+!p2@HOXD11!1.27!17.59!HOXD11;;chr8:67525443..67525459,-!p2@MYBL1!1.26!25.54!MYBL1;;chr11:46299199..46299233,+!p1@CREB3L1!1.25!85.69!CREB3L1;;chr14:73360799..73360817,-!p1@DPF3!1.23!54.48!DPF3;;chr6:10415484..10415508,-!p3@TFAP2A!1.21!15.32!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!1.20!36.32!FOXC2;;chr12:66218255..66218304,+!p3@HMGA2!1.19!39.16!HMGA2;;chr10:8096772..8096787,+!p2@GATA3!1.19!17.03!GATA3;;chr6:10412392..10412409,-!p4@TFAP2A!1.19!16.46!TFAP2A;;chr12:66218003..66218018,+!p9@HMGA2!1.18!17.03!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!1.15!95.34!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!1.15!18.16!HOXB7;;chr6:85474299..85474324,-!p1@TBX18!1.14!22.70!TBX18;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.46!TFAP2C;;chr10:8096631..8096660,+!p1@GATA3!1.14!15.32!GATA3;;chr15:67418119..67418162,+!p5@SMAD3!1.12!13.62!SMAD3;;chr10:48355030..48355090,+!p1@ZNF488!1.11!15.32!ZNF488;;chr2:185463247..185463263,+!p1@ZNF804A!1.10!20.43!ZNF804A;;chr6:45390025..45390076,+!p2@RUNX2!1.07!26.11!RUNX2;;chr6:45390002..45390023,+!p6@RUNX2!1.06!18.16!RUNX2;;chr12:66218598..66218645,+!p2@HMGA2!1.03!45.97!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.03!38.59!FOSL1;;chr1:6479968..6479986,-!p1@HES2!1.03!9.65!HES2;;chr14:61116183..61116208,-!p1@SIX1!1.02!36.32!SIX1;;chr12:77459306..77459365,-!p1@E2F7!1.01!118.04!E2F7;;chr8:67525473..67525518,-!p1@MYBL1!1.01!21.57!MYBL1;;chr12:66218378..66218401,+!p6@HMGA2!0.99!13.62!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.19!CREB3L1;;chr15:96874012..96874042,+!p2@NR2F2!0.95!73.21!NR2F2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.70!TWIST1;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!34.05!ZFHX4;;chr3:157823517..157823562,-!p1@SHOX2!0.92!7.95!SHOX2;;chr17:17726907..17726958,-!p2@SREBF1!0.90!45.40!SREBF1;;chr2:19558373..19558392,-!p1@OSR1!0.90!19.86!OSR1;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.16!TWIST1;;chr2:200323414..200323455,-!p1@SATB2!0.90!15.32!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.90!10.22!HMGA2;;chr20:21494684..21494708,-!p1@NKX2-2!0.89!6.81!NKX2-2;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.81!HOXD8;;chrX:66763856..66763896,+!p1@AR!0.88!9.65!AR;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.27!CREB5;;chr9:22447422..22447483,+!p1@DMRTA1!0.86!6.24!DMRTA1;;chr12:3068544..3068597,+!p1@TEAD4!0.85!39.16!TEAD4;;chr14:62162285..62162296,+!p3@HIF1A!0.84!32.92!HIF1A;;chr5:321810..321877,+!p1@AHRR!0.84!19.86!AHRR;;chr3:150126759..150126784,+!p2@TSC22D2!0.83!28.38!TSC22D2;;chr19:42636586..42636607,-!p1@POU2F2!0.82!16.46!POU2F2;;chr3:114343870..114343887,-!p9@ZBTB20!0.82!5.68!ZBTB20;;chr6:45389835..45389861,+!p7@RUNX2!0.81!9.08!RUNX2;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.40!DRAP1;;chr15:67418047..67418093,+!p4@SMAD3!0.80!6.81!SMAD3;;chr3:114343826..114343869,-!p4@ZBTB20!0.79!10.78!ZBTB20;;chr6:45390077..45390105,+!p9@RUNX2!0.79!6.81!RUNX2;;chr17:46682321..46682362,-!p1@HOXB6!0.79!5.11!HOXB6;;chr12:2986275..2986363,-!p1@FOXM1!0.78!55.05!FOXM1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.78!48.24!PPP1R13L;;chr17:41277372..41277418,-!p1@BRCA1!0.78!19.86!BRCA1;;chr9:115818951..115819011,-!p1@ZFP37!0.78!16.46!ZFP37;;chr17:41623009..41623053,-!p4@ETV4!0.78!8.51!ETV4;;chr15:96873921..96873946,+!p1@NR2F2!0.75!145.28!NR2F2;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.57!ETV4;;chr12:80084737..80084763,-!p3@PAWR!0.75!18.73!PAWR;;chr15:96874244..96874259,+!p5@NR2F2!0.75!11.92!NR2F2;;chr17:41622834..41622883,-!p6@ETV4!0.75!5.68!ETV4;;chr12:54694758..54694805,-!p1@NFE2!0.75!5.68!NFE2;;chr15:96874216..96874236,+!p13@NR2F2!0.74!7.38!NR2F2;;chr2:185463158..185463181,+!p2@ZNF804A!0.74!4.54!ZNF804A;;chr4:111558135..111558198,-!p2@PITX2!0.74!4.54!PITX2;;chr4:1873011..1873063,+!p2@WHSC1!0.72!15.89!WHSC1;;chr18:19749541..19749557,+!p1@GATA6!0.72!14.76!GATA6;;chr8:67525524..67525543,-!p3@MYBL1!0.72!7.38!MYBL1;;chr3:169381420..169381535,-!p1@MECOM!0.72!5.11!MECOM;;chr14:62162258..62162269,+!p2@HIF1A!0.71!44.83!HIF1A;;chr12:80084303..80084332,-!p1@PAWR!0.71!27.24!PAWR;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.24!MYBL2;;chr6:45389791..45389832,+!p3@RUNX2!0.71!11.35!RUNX2;;chr20:42295745..42295765,+!p1@MYBL2!0.70!74.91!MYBL2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.97!GLIS2;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.43!FOXD1;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.38!DRAP1;;chr5:43067636..43067674,+!p6@ZNF131!0.70!5.68!ZNF131;;chr16:31076332..31076388,-!p3@ZNF668!0.70!3.97!ZNF668;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.70!3.97!SEBOX;;chr17:46687935..46687950,-!p3@HOXB7!0.70!3.97!HOXB7;;chr3:138665937..138665968,-!p1@FOXL2!0.70!3.97!FOXL2;;chr20:306489..306564,+!p1@SOX12!0.69!48.24!SOX12;;chr5:176738887..176738934,-!p1@MXD3!0.69!29.51!MXD3;;chr9:109625229..109625282,+!p2@ZNF462!0.69!6.81!ZNF462;;chr6:20402102..20402152,+!p1@E2F3!0.68!17.59!E2F3;;chr6:126240380..126240430,+!p2@NCOA7!0.68!10.78!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.68!7.95!HMGA2;;chr17:41623075..41623101,-!p9@ETV4!0.68!4.54!ETV4;;chr17:46622229..46622257,-!p6@HOXB2!0.68!4.54!HOXB2;;chr19:45971246..45971265,+!p1@FOSB!0.67!80.02!FOSB;;chr19:57946684..57946723,+!p1@ZNF749!0.67!47.10!ZNF749;;chr14:62162224..62162254,+!p1@HIF1A!0.66!611.21!HIF1A;;chr11:65667846..65667868,-!p1@FOSL1!0.65!107.83!FOSL1;;chr4:26322419..26322479,+!p2@RBPJ!0.65!49.37!RBPJ;;chr19:48774586..48774670,+!p1@ZNF114!0.65!4.54!ZNF114;;chr19:56152437..56152467,+!p3@ZNF580!0.64!19.86!ZNF580;;chr2:239148671..239148686,-!p1@HES6!0.64!14.19!HES6;;chr20:50721803..50721857,-!p2@ZFP64!0.64!5.68!ZFP64;;chr6:45390300..45390335,+!p4@RUNX2!0.64!5.68!RUNX2;;chr11:707063..707088,-!p4@DEAF1!0.64!4.54!DEAF1;;chr12:66218443..66218461,+!p8@HMGA2!0.64!4.54!HMGA2;;chr4:81105027..81105039,+!p3@PRDM8!0.64!3.97!PRDM8;;chr4:299227..299272,-!p1@ZNF732!0.64!3.41!ZNF732;;chr6:45389985..45389996,+!p18@RUNX2!0.64!3.41!RUNX2;;chrX:66763914..66763933,+!p3@AR!0.64!3.41!AR;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.41!FOXC2;;chr17:7493405..7493419,-!p1@SOX15!0.64!3.41!SOX15;;chr12:66218420..66218439,+!p12@HMGA2!0.64!3.41!HMGA2;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.84!GATA2;;chrX:66763815..66763854,+!p2@AR!0.63!4.54!AR;;chr19:45909594..45909625,-!p2@PPP1R13L!0.62!17.03!PPP1R13L;;chr9:2158443..2158481,+!p2@SMARCA2!0.62!10.22!SMARCA2;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.51!TOX2;;chr6:85473156..85473210,-!p2@TBX18!0.62!3.97!TBX18;;chr3:12329320..12329338,+!p4@PPARG!0.62!3.41!PPARG;;chr12:66218836..66218888,+!p1@HMGA2!0.61!34.62!HMGA2;;chr15:96874927..96874938,+!p8@NR2F2!0.61!7.38!NR2F2;;chr1:247171347..247171366,-!p2@ZNF695!0.61!6.24!ZNF695;;chr6:34204672..34204692,+!p1@HMGA1!0.60!413.15!HMGA1;;chr12:19592602..19592648,+!p1@AEBP2!0.60!42.00!AEBP2;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.38!GLI2;;chr20:62462566..62462631,-!p1@ZBTB46!0.60!6.24!ZBTB46;;chr6:42419649..42419673,-!p3@TRERF1!0.60!5.68!TRERF1;;chr20:32274179..32274213,-!p1@E2F1!0.59!23.27!E2F1;;chr5:43120995..43121052,+!p1@ZNF131!0.59!17.59!ZNF131;;chr12:80085061..80085119,-!p6@PAWR!0.59!5.11!PAWR;;chr6:34204921..34204939,+!p3@HMGA1!0.58!104.99!HMGA1;;chr17:17740287..17740307,-!p1@SREBF1!0.58!91.94!SREBF1;;chr16:67596498..67596520,+!p2@CTCF!0.58!11.92!CTCF;;chr19:37096139..37096170,-!p2@ZNF529!0.58!9.08!ZNF529;;chr19:47922750..47922795,-!p1@MEIS3!0.58!5.11!MEIS3;;chr1:44513995..44514031,+!p1@KLF17!0.58!2.84!KLF17;;chr21:38071430..38071456,+!p1@SIM2!0.58!2.84!SIM2;;chr7:27190547..27190591,-!p1@HOXA6!0.58!2.84!HOXA6;;chr8:77593448..77593471,+!p2@ZFHX4!0.58!2.84!ZFHX4;;chr12:54402745..54402788,+!p1@HOXC8!0.58!2.84!HOXC8;;chr13:100634130..100634143,+!p3@ZIC2!0.58!2.84!ZIC2;;chr2:172967276..172967296,-!p3@DLX2!0.58!2.84!DLX2;;chr3:138665969..138665993,-!p2@FOXL2!0.58!2.84!FOXL2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.58!2.84!SEBOX;;chr17:41622982..41623001,-!p11@ETV4!0.58!2.84!ETV4;;chr18:55102598..55102623,+!p1@ONECUT2!0.58!2.84!ONECUT2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.57!362.08!ZFP36L2;;chr1:226595741..226595818,-!p1@PARP1!0.57!175.36!PARP1;;chr12:2986206..2986258,-!p2@FOXM1!0.57!19.86!FOXM1;;chr10:63809013..63809041,+!p3@ARID5B!0.57!18.16!ARID5B;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.76!TOX2;;chr10:94449703..94449718,+!p1@HHEX!0.57!12.49!HHEX;;chr19:37096194..37096235,+!p1@ZNF382!0.57!10.22!ZNF382;;chr19:56092252..56092287,-!p2@ZNF579!0.57!9.08!ZNF579;;chr17:7388010..7388017,-!p5@ZBTB4!0.57!5.11!ZBTB4;;chr2:239756739..239756755,+!p2@TWIST2!0.57!5.11!TWIST2;;chr17:41622765..41622821,-!p2@ETV4!0.57!4.54!ETV4;;chr1:205601000..205601055,-!p2@ELK4!0.56!13.05!ELK4;;chr19:31840313..31840380,-!p1@TSHZ3!0.56!7.95!TSHZ3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.56!2.84!GLIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.56!2.84!HMGA2;;chr8:28243813..28243839,-!p4@ZNF395!0.55!5.11!ZNF395;;chr15:56535722..56535764,-!p3@RFX7!0.55!3.97!RFX7;;chr8:49833978..49833996,-!p1@SNAI2!0.54!64.13!SNAI2;;chr9:14314131..14314147,-!p2@NFIB!0.54!17.03!NFIB;;chr19:44952635..44952668,-!p1@ZNF229!0.54!15.32!ZNF229;;chr13:74708029..74708077,-!p2@KLF12!0.54!8.51!KLF12;;chr1:153939955..153940009,+!p2@CREB3L4!0.54!6.81!CREB3L4;;chr6:45390269..45390298,+!p5@RUNX2!0.54!4.54!RUNX2;;chr19:56152361..56152434,+!p1@ZNF580!0.53!82.29!ZNF580;;chr14:45722360..45722415,-!p1@MIS18BP1!0.53!47.67!MIS18BP1;;chr19:49865646..49865718,-!p1@TEAD2!0.53!26.11!TEAD2;;chr10:114710098..114710130,+!p2@TCF7L2!0.53!22.70!TCF7L2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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10600-108E6
 |is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF:0000210;;FF:0100460
 |is_obsolete=
 |library_id=CNhs11729
+|library_id_phase_based=2:CNhs11729
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10600
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10600
 |name=myxofibrosarcoma cell line:MFH-ino
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11729,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 75: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=108E6
+|rna_tube_id=1.08E+08
 |rna_weight_ug=34.01343
 |sample_age=unknown
@@ Line 88: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10600-108E6;search_select_hide=table117:FF:10600-108E6
 }}

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FF:10600-108E6: Difference between revisions

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Latest revision as of 14:30, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0