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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008196
|DRA_sample_Accession=CAGE@SAMD00004821
|accession_numbers=CAGE;DRX008304;DRR009176;DRZ000601;DRZ001986
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004821
|accession_numbers=CAGE;DRX008304;DRR009176;DRZ000601;DRZ001986;DRZ011951;DRZ013336
|accession_numbers_RNASeq=sRNA-Seq;DRX037250;DRR041616;DRZ007258
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!2.19!315.27!C11orf9;;chr4:174451370..174451387,-!p1@HAND2!2.14!137.47!HAND2;;chr18:19749386..19749404,+!p2@GATA6!1.77!82.31!GATA6;;chr8:11561684..11561751,+!p1@GATA4!1.77!58.44!GATA4;;chr2:19558373..19558392,-!p1@OSR1!1.75!145.29!OSR1;;chr11:32457075..32457095,-!p1@WT1!1.69!47.74!WT1;;chr18:19749541..19749557,+!p1@GATA6!1.67!138.29!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!145.29!CREB3L1;;chr8:37963466..37963506,+!p3@ASH2L!1.43!32.51!ASH2L;;chr16:86544113..86544145,+!p1@FOXF1!1.40!30.04!FOXF1;;chr5:92919375..92919438,+!p6@NR2F1!1.39!25.52!NR2F1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.39!23.46!SEBOX;;chr1:197886461..197886558,+!p1@LHX9!1.36!21.81!LHX9;;chr5:92918919..92918942,+!p1@NR2F1!1.33!88.49!NR2F1;;chr11:46299539..46299620,+!p2@CREB3L1!1.28!30.04!CREB3L1;;chr15:83953397..83953425,-!p1@BNC1!1.26!19.76!BNC1;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.41!HAND2;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!37.04!ZFPM2;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.40!HIC1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.70!TCF21;;chr17:46655704..46655718,-!p2@HOXB4!0.99!13.17!HOXB4;;chr8:37963407..37963454,+!p2@ASH2L!0.98!26.34!ASH2L;;chr19:46801639..46801699,+!p1@HIF3A!0.98!8.64!HIF3A;;chr4:174451350..174451363,-!p3@HAND2!0.98!8.64!HAND2;;chr8:106330696..106330719,+!p2@ZFPM2!0.97!10.70!ZFPM2;;chr12:57504975..57505019,-!p2@STAT6!0.95!32.93!STAT6;;chr5:92918894..92918912,+!p2@NR2F1!0.94!25.93!NR2F1;;chr8:49833948..49833973,-!p2@SNAI2!0.93!49.80!SNAI2;;chr11:32457413..32457431,-!p2@WT1!0.92!7.41!WT1;;chr17:46622070..46622109,-!p1@HOXB2!0.90!16.05!HOXB2;;chr1:221052840..221052875,+!p4@HLX!0.90!8.23!HLX;;chr1:201979743..201979762,+!p1@ELF3!0.90!7.00!ELF3;;chrY:21906594..21906622,-!p1@KDM5D!0.90!7.00!KDM5D;;chr7:42276787..42276815,-!p1@GLI3!0.89!18.93!GLI3;;chr16:67881588..67881612,-!p2@CENPT!0.89!9.47!CENPT;;chr18:19749353..19749367,+!p4@GATA6!0.88!6.59!GATA6;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.59!TBX20;;chr11:32456954..32456965,-!p4@WT1!0.88!6.59!WT1;;chr11:125034605..125034636,+!p2@PKNOX2!0.86!6.17!PKNOX2;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.17!SNAI2;;chr19:45260775..45260838,+!p5@BCL3!0.84!7.82!BCL3;;chr5:92918860..92918871,+!p10@NR2F1!0.84!6.59!NR2F1;;chr7:44143925..44143970,+!p1@AEBP1!0.83!137.88!AEBP1;;chr17:1958388..1958404,+!p1@HIC1!0.83!39.10!HIC1;;chr7:19157248..19157268,-!p1@TWIST1!0.83!16.87!TWIST1;;chr14:21994337..21994442,-!p1@SALL2!0.83!16.87!SALL2;;chr1:221052776..221052799,+!p1@HLX!0.83!10.70!HLX;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.52!TWIST2;;chr17:46621937..46621966,-!p2@HOXB2!0.81!15.64!HOXB2;;chr16:79633894..79633954,-!p3@MAF!0.81!11.11!MAF;;chr17:46622114..46622138,-!p4@HOXB2!0.81!8.64!HOXB2;;chr2:121493425..121493474,+!p1@GLI2!0.80!12.35!GLI2;;chr2:239756739..239756755,+!p2@TWIST2!0.80!9.47!TWIST2;;chr2:66662281..66662308,+!p1@MEIS1!0.78!18.52!MEIS1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.77!4.94!SEBOX;;chr5:92919312..92919334,+!p13@NR2F1!0.77!4.94!NR2F1;;chr19:49865646..49865718,-!p1@TEAD2!0.76!44.86!TEAD2;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.59!TEAD2;;chr9:16870659..16870675,-!p2@BNC2!0.75!5.76!BNC2;;chr5:92918768..92918783,+!p8@NR2F1!0.74!4.53!NR2F1;;chr8:55370487..55370503,+!p1@SOX17!0.74!4.53!SOX17;;chr11:125034640..125034655,+!p1@PKNOX2!0.74!4.53!PKNOX2;;chr12:54447637..54447659,+!p4@HOXC4!0.74!4.53!HOXC4;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.23!GATA6;;chr17:59477233..59477263,+!p1@TBX2!0.71!13.99!TBX2;;chr9:96717629..96717644,-!p1@BARX1!0.71!4.12!BARX1;;chr7:27153454..27153469,-!p2@HOXA3!0.71!4.12!HOXA3;;chr1:201979703..201979721,+!p2@ELF3!0.71!4.12!ELF3;;chr7:150945754..150945789,-!p2@SMARCD3!0.70!13.58!SMARCD3;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.82!AEBP1;;chr1:221052733..221052749,+!p2@HLX!0.70!5.35!HLX;;chr6:19837592..19837621,+!p1@ID4!0.69!26.75!ID4;;chr7:19157043..19157088,-!p2@TWIST1!0.69!10.70!TWIST1;;chr15:37390850..37390909,-!p3@MEIS2!0.69!8.23!MEIS2;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.94!HOXC4;;chr17:46675420..46675465,-!p3@HOXB6!0.68!4.53!HOXB6;;chr4:2263809..2263854,-!p1@MXD4!0.67!165.86!MXD4;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.19!NFIX;;chr7:42276822..42276895,-!p2@GLI3!0.67!12.35!GLI3;;chr2:121493492..121493537,+!p2@GLI2!0.67!6.59!GLI2;;chr5:92918956..92918969,+!p4@NR2F1!0.67!4.12!NR2F1;;chr17:38498594..38498661,+!p2@RARA!0.66!13.58!RARA;;chr5:92919100..92919135,+!p3@NR2F1!0.66!4.53!NR2F1;;chr16:8962853..8962878,-!p1@CARHSP1!0.65!241.59!CARHSP1;;chr6:21597765..21597779,+!p2@SOX4!0.64!31.69!SOX4;;chr17:46655730..46655791,-!p1@HOXB4!0.64!9.47!HOXB4;;chr16:8962202..8962222,-!p3@CARHSP1!0.64!6.59!CARHSP1;;chr19:13134772..13134822,+!p2@NFIX!0.64!5.35!NFIX;;chr19:31840313..31840380,-!p1@TSHZ3!0.63!9.47!TSHZ3;;chr15:67430351..67430366,+!p10@SMAD3!0.63!3.29!SMAD3;;chr17:46621146..46621180,-!p10@HOXB2!0.63!3.29!HOXB2;;chr8:37963559..37963568,+!p6@ASH2L!0.63!3.29!ASH2L;;chr11:46299443..46299459,+!p4@CREB3L1!0.63!3.29!CREB3L1;;chr8:48650715..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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg38.nobarcode.ctss.bed.gz
|id=FF:11524-119I3
|id=FF:11524-119I3
|is_a=EFO:0002091;;FF:0000077;;FF:0000210
|is_a=EFO:0002091;;FF:0000077;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs11335
|library_id=CNhs11335
|library_ids=CNhs11335
|library_id_phase_based=2:CNhs11335
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11524
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.ACAGTG.11524
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11524
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.ACAGTG.11524
|name=Hepatic Stellate Cells (lipocyte), donor1
|name=Hepatic Stellate Cells (lipocyte), donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11335,LSID768,release014,COMPLETED
|profile_hcage=CNhs11335,LSID768,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|profile_srnaseq=SRhi10015,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 89: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:2.31665055124;GLI1..3:2.19685194119;ZNF423:1.93349072449;HOX{A5,B5}:1.91350887065;RXRA_VDR{dimer}:1.69340427647;TFAP4:1.47910930477;EBF1:1.43337578942;TFCP2:1.38612789999;TLX1..3_NFIC{dimer}:1.35694127044;ESR1:1.32253880387;LHX3,4:1.28849350232;GTF2A1,2:1.28475011251;ZNF238:1.24641983659;ZNF148:1.19877619479;XCPE1{core}:1.06330113555;TEAD1:1.02406062767;SMAD1..7,9:1.023019051;SRF:1.00232378824;NR6A1:0.945466306788;HAND1,2:0.910918431832;GTF2I:0.870867536247;NANOG:0.863081683037;PAX5:0.829867648812;HNF1A:0.814851231556;NR5A1,2:0.787902452892;ZIC1..3:0.760309597875;HIC1:0.719642832799;IKZF1:0.712007525181;NR1H4:0.706925272729;PATZ1:0.697896165806;TFAP2{A,C}:0.679793438569;MAZ:0.672887838896;SP1:0.666233465644;ZBTB6:0.660022050112;RREB1:0.658217590059;DBP:0.652846053869;EP300:0.652655740198;ATF6:0.637089305984;bHLH_family:0.601373667691;EN1,2:0.596969735694;GZF1:0.582562776851;MYBL2:0.552722087405;HES1:0.543095850589;HOXA9_MEIS1:0.522114461282;TP53:0.503096826431;ZNF384:0.491956076167;SPZ1:0.491530702728;CRX:0.490125983354;TBP:0.465590043641;HNF4A_NR2F1,2:0.452794252958;TFAP2B:0.436571522759;REST:0.431895006304;MZF1:0.421625081354;LEF1_TCF7_TCF7L1,2:0.408523028206;PBX1:0.408202958353;FOXM1:0.356154335782;GFI1B:0.3509944833;MTE{core}:0.333761332887;STAT2,4,6:0.325399620114;TBX4,5:0.307178207358;TOPORS:0.303188962146;STAT5{A,B}:0.301591687236;SOX17:0.286681187797;AR:0.271333374859;XBP1:0.216064607832;GFI1:0.20869170355;GATA6:0.194771484582;ESRRA:0.188711319084;HOX{A6,A7,B6,B7}:0.176628353464;ONECUT1,2:0.152549579643;RXR{A,B,G}:0.132960958238;MEF2{A,B,C,D}:0.120216745282;NFE2L2:0.114572173603;LMO2:0.111044655509;KLF4:0.106985848329;CDC5L:0.0999668250514;UFEwm:0.0778414213173;NKX3-1:0.0750630209568;PAX1,9:0.0702513612778;HMX1:0.0510289064097;EGR1..3:0.021642280953;NKX2-3_NKX2-5:0.0160381283334;RORA:-0.00578738292813;NR3C1:-0.00912849962997;NFATC1..3:-0.0280177893438;FOXP3:-0.0310155453762;NFY{A,B,C}:-0.0324621083134;FOS_FOS{B,L1}_JUN{B,D}:-0.0353276141437;EVI1:-0.0478589918028;HSF1,2:-0.0566534577172;POU5F1:-0.0601275893344;HOX{A4,D4}:-0.0639188690618;NANOG{mouse}:-0.0678455974236;NFE2L1:-0.0691845137503;RFX1:-0.0750142357059;PRRX1,2:-0.113612651836;SOX5:-0.121414723165;ALX4:-0.128795290535;SOX{8,9,10}:-0.136436125371;GCM1,2:-0.147713333055;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.153606912419;HLF:-0.159166926313;JUN:-0.161679917713;GATA4:-0.177328498026;ZNF143:-0.178300744622;POU2F1..3:-0.18634234134;NFKB1_REL_RELA:-0.192262624553;BACH2:-0.192428429747;NFE2:-0.209334380011;MTF1:-0.211088986664;YY1:-0.228104515367;NHLH1,2:-0.228134163116;ETS1,2:-0.231152827213;POU3F1..4:-0.231960168768;ADNP_IRX_SIX_ZHX:-0.25280245161;HMGA1,2:-0.254930197591;SNAI1..3:-0.257746113475;PRDM1:-0.260617159422;MED-1{core}:-0.272331498129;FOX{D1,D2}:-0.284057550825;MAFB:-0.291586593689;FOSL2:-0.295823113189;FOX{F1,F2,J1}:-0.296497239588;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.29674206513;RUNX1..3:-0.310358535391;AHR_ARNT_ARNT2:-0.322175040568;NKX6-1,2:-0.323909948366;MYFfamily:-0.324549412351;NFIX:-0.350370915245;STAT1,3:-0.35286275241;E2F1..5:-0.366386096081;NKX2-2,8:-0.36771453073;MYOD1:-0.408220504453;PPARG:-0.408456099975;NKX3-2:-0.414429950309;POU6F1:-0.450334589077;BREu{core}:-0.46845587027;FOXL1:-0.479532098893;CEBPA,B_DDIT3:-0.481476762701;PAX8:-0.492706046771;SOX2:-0.500464111817;OCT4_SOX2{dimer}:-0.50875621711;HIF1A:-0.522283840273;TFDP1:-0.534293723773;NKX2-1,4:-0.545945451634;SPIB:-0.551672642719;PAX3,7:-0.561386813859;ATF2:-0.563547806077;PAX6:-0.572014677716;TEF:-0.582663588747;CUX2:-0.602145433503;ZEB1:-0.607112705263;ARID5B:-0.612605883191;PAX4:-0.615658206008;CDX1,2,4:-0.629694431619;T:-0.645191732131;ZFP161:-0.655080901097;TGIF1:-0.659997715785;NFIL3:-0.699469489176;IRF1,2:-0.702246451972;SPI1:-0.704471793623;FOX{I1,J2}:-0.706774589247;IRF7:-0.735718138883;NRF1:-0.765189074908;FOXA2:-0.771378854557;TLX2:-0.773771883332;AIRE:-0.807912334358;FOXO1,3,4:-0.825555379438;RBPJ:-0.833848362218;POU1F1:-0.847256494284;MYB:-0.85676633534;HBP1_HMGB_SSRP1_UBTF:-0.874684020243;PDX1:-0.912094541265;VSX1,2:-0.922285939168;PAX2:-0.990573559289;FOXP1:-1.00194096059;FOXQ1:-1.00702917586;ELK1,4_GABP{A,B1}:-1.0395289252;PITX1..3:-1.04328239008;ATF4:-1.05537494238;DMAP1_NCOR{1,2}_SMARC:-1.06295932715;RFX2..5_RFXANK_RFXAP:-1.0803128785;ATF5_CREB3:-1.14000389775;ELF1,2,4:-1.17646187919;SREBF1,2:-1.22151676531;CREB1:-1.23641508536;FOXD3:-1.24624304519;ALX1:-1.29995388505;BPTF:-1.34091643063;IKZF2:-1.70671925774;ZBTB16:-1.84302840142;FOXN1:-1.9962878125
|top_motifs=TAL1_TCF{3,4,12}:2.31665055124;GLI1..3:2.19685194119;ZNF423:1.93349072449;HOX{A5,B5}:1.91350887065;RXRA_VDR{dimer}:1.69340427647;TFAP4:1.47910930477;EBF1:1.43337578942;TFCP2:1.38612789999;TLX1..3_NFIC{dimer}:1.35694127044;ESR1:1.32253880387;LHX3,4:1.28849350232;GTF2A1,2:1.28475011251;ZNF238:1.24641983659;ZNF148:1.19877619479;XCPE1{core}:1.06330113555;TEAD1:1.02406062767;SMAD1..7,9:1.023019051;SRF:1.00232378824;NR6A1:0.945466306788;HAND1,2:0.910918431832;GTF2I:0.870867536247;NANOG:0.863081683037;PAX5:0.829867648812;HNF1A:0.814851231556;NR5A1,2:0.787902452892;ZIC1..3:0.760309597875;HIC1:0.719642832799;IKZF1:0.712007525181;NR1H4:0.706925272729;PATZ1:0.697896165806;TFAP2{A,C}:0.679793438569;MAZ:0.672887838896;SP1:0.666233465644;ZBTB6:0.660022050112;RREB1:0.658217590059;DBP:0.652846053869;EP300:0.652655740198;ATF6:0.637089305984;bHLH_family:0.601373667691;EN1,2:0.596969735694;GZF1:0.582562776851;MYBL2:0.552722087405;HES1:0.543095850589;HOXA9_MEIS1:0.522114461282;TP53:0.503096826431;ZNF384:0.491956076167;SPZ1:0.491530702728;CRX:0.490125983354;TBP:0.465590043641;HNF4A_NR2F1,2:0.452794252958;TFAP2B:0.436571522759;REST:0.431895006304;MZF1:0.421625081354;LEF1_TCF7_TCF7L1,2:0.408523028206;PBX1:0.408202958353;FOXM1:0.356154335782;GFI1B:0.3509944833;MTE{core}:0.333761332887;STAT2,4,6:0.325399620114;TBX4,5:0.307178207358;TOPORS:0.303188962146;STAT5{A,B}:0.301591687236;SOX17:0.286681187797;AR:0.271333374859;XBP1:0.216064607832;GFI1:0.20869170355;GATA6:0.194771484582;ESRRA:0.188711319084;HOX{A6,A7,B6,B7}:0.176628353464;ONECUT1,2:0.152549579643;RXR{A,B,G}:0.132960958238;MEF2{A,B,C,D}:0.120216745282;NFE2L2:0.114572173603;LMO2:0.111044655509;KLF4:0.106985848329;CDC5L:0.0999668250514;UFEwm:0.0778414213173;NKX3-1:0.0750630209568;PAX1,9:0.0702513612778;HMX1:0.0510289064097;EGR1..3:0.021642280953;NKX2-3_NKX2-5:0.0160381283334;RORA:-0.00578738292813;NR3C1:-0.00912849962997;NFATC1..3:-0.0280177893438;FOXP3:-0.0310155453762;NFY{A,B,C}:-0.0324621083134;FOS_FOS{B,L1}_JUN{B,D}:-0.0353276141437;EVI1:-0.0478589918028;HSF1,2:-0.0566534577172;POU5F1:-0.0601275893344;HOX{A4,D4}:-0.0639188690618;NANOG{mouse}:-0.0678455974236;NFE2L1:-0.0691845137503;RFX1:-0.0750142357059;PRRX1,2:-0.113612651836;SOX5:-0.121414723165;ALX4:-0.128795290535;SOX{8,9,10}:-0.136436125371;GCM1,2:-0.147713333055;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.153606912419;HLF:-0.159166926313;JUN:-0.161679917713;GATA4:-0.177328498026;ZNF143:-0.178300744622;POU2F1..3:-0.18634234134;NFKB1_REL_RELA:-0.192262624553;BACH2:-0.192428429747;NFE2:-0.209334380011;MTF1:-0.211088986664;YY1:-0.228104515367;NHLH1,2:-0.228134163116;ETS1,2:-0.231152827213;POU3F1..4:-0.231960168768;ADNP_IRX_SIX_ZHX:-0.25280245161;HMGA1,2:-0.254930197591;SNAI1..3:-0.257746113475;PRDM1:-0.260617159422;MED-1{core}:-0.272331498129;FOX{D1,D2}:-0.284057550825;MAFB:-0.291586593689;FOSL2:-0.295823113189;FOX{F1,F2,J1}:-0.296497239588;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.29674206513;RUNX1..3:-0.310358535391;AHR_ARNT_ARNT2:-0.322175040568;NKX6-1,2:-0.323909948366;MYFfamily:-0.324549412351;NFIX:-0.350370915245;STAT1,3:-0.35286275241;E2F1..5:-0.366386096081;NKX2-2,8:-0.36771453073;MYOD1:-0.408220504453;PPARG:-0.408456099975;NKX3-2:-0.414429950309;POU6F1:-0.450334589077;BREu{core}:-0.46845587027;FOXL1:-0.479532098893;CEBPA,B_DDIT3:-0.481476762701;PAX8:-0.492706046771;SOX2:-0.500464111817;OCT4_SOX2{dimer}:-0.50875621711;HIF1A:-0.522283840273;TFDP1:-0.534293723773;NKX2-1,4:-0.545945451634;SPIB:-0.551672642719;PAX3,7:-0.561386813859;ATF2:-0.563547806077;PAX6:-0.572014677716;TEF:-0.582663588747;CUX2:-0.602145433503;ZEB1:-0.607112705263;ARID5B:-0.612605883191;PAX4:-0.615658206008;CDX1,2,4:-0.629694431619;T:-0.645191732131;ZFP161:-0.655080901097;TGIF1:-0.659997715785;NFIL3:-0.699469489176;IRF1,2:-0.702246451972;SPI1:-0.704471793623;FOX{I1,J2}:-0.706774589247;IRF7:-0.735718138883;NRF1:-0.765189074908;FOXA2:-0.771378854557;TLX2:-0.773771883332;AIRE:-0.807912334358;FOXO1,3,4:-0.825555379438;RBPJ:-0.833848362218;POU1F1:-0.847256494284;MYB:-0.85676633534;HBP1_HMGB_SSRP1_UBTF:-0.874684020243;PDX1:-0.912094541265;VSX1,2:-0.922285939168;PAX2:-0.990573559289;FOXP1:-1.00194096059;FOXQ1:-1.00702917586;ELK1,4_GABP{A,B1}:-1.0395289252;PITX1..3:-1.04328239008;ATF4:-1.05537494238;DMAP1_NCOR{1,2}_SMARC:-1.06295932715;RFX2..5_RFXANK_RFXAP:-1.0803128785;ATF5_CREB3:-1.14000389775;ELF1,2,4:-1.17646187919;SREBF1,2:-1.22151676531;CREB1:-1.23641508536;FOXD3:-1.24624304519;ALX1:-1.29995388505;BPTF:-1.34091643063;IKZF2:-1.70671925774;ZBTB16:-1.84302840142;FOXN1:-1.9962878125
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11524-119I3;search_select_hide=table117:FF:11524-119I3
}}
}}

Latest revision as of 18:06, 4 June 2020

Name:Hepatic Stellate Cells (lipocyte), donor1
Species:Human (Homo sapiens)
Library ID:CNhs11335
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typeadipocyte, lipocyte of liver
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC5305
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004821
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11335 CAGE DRX008304 DRR009176
Accession ID Hg19

Library idBAMCTSS
CNhs11335 DRZ000601 DRZ001986
Accession ID Hg38

Library idBAMCTSS
CNhs11335 DRZ011951 DRZ013336
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004821
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.ACAGTG sRNA-Seq DRX037250 DRR041616
Accession ID Hg19

Library idBAMCTSS
SRhi10015.ACAGTG DRZ007258


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.21
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0188
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.387
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.241
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0295
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.485
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.258
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.261
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.021
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.305
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0946
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.15
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.54
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.423
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.349
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.709
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.485
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11335

Jaspar motifP-value
MA0002.20.988
MA0003.10.239
MA0004.10.746
MA0006.10.238
MA0007.10.0599
MA0009.10.263
MA0014.10.897
MA0017.10.098
MA0018.26.54865e-4
MA0019.10.611
MA0024.10.00368
MA0025.10.0864
MA0027.10.302
MA0028.10.00407
MA0029.10.0778
MA0030.10.393
MA0031.10.344
MA0035.20.035
MA0038.10.0561
MA0039.20.485
MA0040.10.599
MA0041.10.306
MA0042.10.798
MA0043.17.15612e-5
MA0046.14.68085e-6
MA0047.20.567
MA0048.10.604
MA0050.11.03412e-5
MA0051.10.00383
MA0052.10.396
MA0055.10.147
MA0057.10.331
MA0058.10.428
MA0059.10.859
MA0060.10.265
MA0061.10.75
MA0062.21.90516e-7
MA0065.20.423
MA0066.10.45
MA0067.10.00101
MA0068.10.852
MA0069.10.977
MA0070.10.0252
MA0071.10.097
MA0072.10.945
MA0073.10.873
MA0074.10.317
MA0076.15.47735e-5
MA0077.10.575
MA0078.10.584
MA0079.20.537
MA0080.21.00055e-5
MA0081.10.0227
MA0083.12.08279e-4
MA0084.10.778
MA0087.10.26
MA0088.10.951
MA0090.11.78923e-4
MA0091.10.00561
MA0092.10.0379
MA0093.10.694
MA0099.20.874
MA0100.10.272
MA0101.10.447
MA0102.20.00104
MA0103.10.749
MA0104.20.276
MA0105.10.878
MA0106.10.235
MA0107.10.573
MA0108.29.77038e-7
MA0111.10.286
MA0112.20.0117
MA0113.10.0171
MA0114.10.157
MA0115.10.872
MA0116.10.498
MA0117.10.226
MA0119.10.108
MA0122.10.853
MA0124.10.365
MA0125.10.633
MA0131.10.111
MA0135.10.47
MA0136.15.27802e-10
MA0137.20.909
MA0138.20.26
MA0139.10.786
MA0140.10.134
MA0141.10.115
MA0142.10.517
MA0143.10.705
MA0144.10.257
MA0145.10.0928
MA0146.10.0503
MA0147.10.376
MA0148.10.517
MA0149.10.447
MA0150.10.149
MA0152.10.601
MA0153.12.93136e-5
MA0154.10.253
MA0155.10.021
MA0156.17.90517e-7
MA0157.10.316
MA0159.10.593
MA0160.10.251
MA0162.10.149
MA0163.10.536
MA0164.10.644
MA0258.10.0455
MA0259.10.313



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11335

Novel motifP-value
10.781
100.0937
1000.652
1010.587
1020.588
1030.66
1040.369
1050.0559
1060.0823
1070.00971
1080.848
1090.481
110.258
1100.183
1110.231
1120.615
1130.364
1140.589
1150.534
1160.0265
1170.335
1180.942
1190.715
120.583
1200.969
1210.878
1220.354
1230.00938
1240.659
1250.205
1260.83
1270.959
1280.0855
1290.897
130.869
1300.214
1310.588
1320.22
1330.348
1340.244
1350.223
1360.53
1370.141
1380.367
1390.832
140.953
1400.989
1410.575
1420.875
1430.186
1440.726
1450.439
1460.238
1470.621
1480.447
1490.00998
150.788
1500.321
1510.502
1520.104
1530.163
1540.398
1550.3
1560.531
1570.258
1580.0646
1590.93
160.108
1600.0421
1610.582
1620.161
1630.611
1640.68
1650.229
1660.0841
1670.0647
1680.817
1690.0429
170.271
180.163
190.0603
20.104
200.307
210.876
220.0896
230.195
240.733
250.579
260.0681
270.356
280.337
290.626
30.935
300.0403
310.354
321.25526e-11
330.768
340.0763
350.722
360.19
370.567
380.81
390.17
40.483
400.224
410.381
420.913
430.306
440.749
450.149
460.322
470.677
480.377
490.367
50.891
500.35
510.328
520.252
530.683
540.435
550.964
560.408
570.738
580.483
590.0599
60.442
600.332
610.882
620.648
630.273
640.387
650.143
660.624
670.864
680.0533
690.139
70.823
700.291
710.623
720.751
730.22
740.563
750.747
760.234
770.0158
780.595
790.148
80.2
800.81
810.784
820.412
830.828
840.771
850.115
860.738
870.417
880.574
890.195
90.352
900.0286
910.196
920.659
930.904
940.852
950.689
960.856
970.5
980.976
990.00259



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11335


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000632 (hepatic stellate cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000077 (hepatic stellate cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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