FFCP PHASE1:Hg19::chr2:176989037..176989043,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:176989037..176989043,+
|short_description=p@chr2:176989037..176989043,+
|description=CAGE_peak_at_chr2:176989037..176989043,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:176989037..176989043,+ | |||
|description=CAGE_peak_at_chr2:176989037..176989043,+ | |||
|id=chr2:176989037..176989043,+ | |||
|ontology_enrichment_celltype=CL:0002681!2.49e-12!13;CL:0002584!2.49e-12!13;CL:1000449!1.94e-09!16;CL:1000497!4.64e-08!18;CL:0002518!4.64e-08!18;CL:0002078!1.70e-07!44;CL:1000612!2.13e-07!7;CL:1000746!2.13e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000239;8.07e-15;3!CL:1000615;8.07e-15;3!CL:0002306;8.07e-15;3!CL:0002681;2.82e-14;12!CL:0002584;2.82e-14;12!CL:0002581;3.64e-12;1!CL:1000449;1.81e-11;15!CL:0002078;4.38e-11;45!CL:1000497;3.82e-10;17!CL:0002518;3.82e-10;17!CL:0002188;1.76e-09;5!CL:0000115;2.45e-09;36!CL:0002138;5.35e-08;6!CL:0002139;3.26e-07;24!CL:1000746;5.18e-07;7!CL:1000612;5.18e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,4.28e-15,3;CL:1000615,4.28e-15,3;CL:0002306,4.28e-15,3;CL:0002681,2.29e-14,12;CL:0002584,2.29e-14,12;CL:0002078,5.23e-14,45;CL:0002581,2.93e-12,1;CL:1000449,1.54e-11,15;CL:1000497,3.31e-10,17;CL:0002518,3.31e-10,17;CL:0000115,4.25e-10,36;CL:0002188,2.00e-09,5;CL:0005020,5.17e-08,6;CL:0002138,5.17e-08,6;CL:0005022,5.17e-08,6;CL:0002139,3.54e-07,24;CL:1000746,5.67e-07,7;CL:1000612,5.67e-07,7 | |||
|ontology_enrichment_development_v019=CL:0005022;5.35e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3347;3.64e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,4.53e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0001225!2.49e-12!13;UBERON:0008987!2.49e-12!13;UBERON:0003887!3.15e-12!21;UBERON:0002113!7.08e-12!27;UBERON:0003918!7.08e-12!27;UBERON:0005095!7.08e-12!27;UBERON:0007687!7.08e-12!27;UBERON:0004876!7.52e-12!20;UBERON:0000489!1.10e-11!32;UBERON:0000080!1.31e-11!18;UBERON:0002120!1.31e-11!18;UBERON:0004875!1.31e-11!18;UBERON:0005721!1.31e-11!18;UBERON:0005754!1.31e-11!18;UBERON:0007297!1.31e-11!18;UBERON:0006554!1.48e-10!44;UBERON:0006555!2.03e-10!17;UBERON:0005103!2.03e-10!17;UBERON:0000083!2.03e-10!17;UBERON:0009201!2.03e-10!17;UBERON:0004819!2.03e-10!17;UBERON:0006553!2.03e-10!17;UBERON:0003074!2.03e-10!17;UBERON:0003060!2.03e-10!17;UBERON:0001008!3.54e-10!45;UBERON:0003064!7.33e-10!37;UBERON:0001851!1.94e-09!16;UBERON:0004211!1.94e-09!16;UBERON:0001285!1.94e-09!16;UBERON:0007684!1.94e-09!16;UBERON:0003220!1.94e-09!16;UBERON:0004208!1.94e-09!16;UBERON:0000353!1.05e-08!17;UBERON:0003886!7.41e-08!63;UBERON:0000074!2.13e-07!7;UBERON:0001229!2.13e-07!7;UBERON:0001230!2.13e-07!7;UBERON:0005749!2.13e-07!7;UBERON:0004199!2.13e-07!7;UBERON:0004209!2.13e-07!7;UBERON:0004198!2.13e-07!7;UBERON:0000058!6.40e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0006853;8.07e-15;3!UBERON:0007685;8.07e-15;3!UBERON:0004134;8.07e-15;3!UBERON:0001225;2.82e-14;12!UBERON:0008987;2.82e-14;12!UBERON:0001473;1.96e-12;8!UBERON:0004536;1.96e-12;8!UBERON:0006558;1.96e-12;8!UBERON:0006834;3.64e-12;1!UBERON:0001851;1.81e-11;15!UBERON:0006555;1.81e-11;15!UBERON:0000353;1.81e-11;15!UBERON:0004819;1.81e-11;15!UBERON:0001285;1.81e-11;15!UBERON:0007684;1.81e-11;15!UBERON:0002465;4.66e-10;10!UBERON:0002113;3.10e-07;24!UBERON:0011143;3.10e-07;24!UBERON:0000074;5.18e-07;7!UBERON:0001229;5.18e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,4.28e-15,3;UBERON:0007685,4.28e-15,3;UBERON:0004134,4.28e-15,3;UBERON:0001225,2.29e-14,12;UBERON:0008987,2.29e-14,12;UBERON:0001473,1.49e-12,8;UBERON:0004536,1.49e-12,8;UBERON:0006558,1.49e-12,8;UBERON:0006834,3.65e-12,1;UBERON:0001851,1.54e-11,15;UBERON:0004211,1.54e-11,15;UBERON:0009773,1.54e-11,15;UBERON:0000353,1.54e-11,15;UBERON:0001231,1.54e-11,15;UBERON:0001285,1.54e-11,15;UBERON:0007684,1.54e-11,15;UBERON:0004208,1.54e-11,15;UBERON:0006555,7.84e-11,16;UBERON:0004819,7.84e-11,16;UBERON:0002465,3.75e-10,10;UBERON:0010532,5.67e-07,7;UBERON:0000074,5.67e-07,7;UBERON:0001229,5.67e-07,7;UBERON:0001230,5.67e-07,7;UBERON:0003220,5.67e-07,7;UBERON:0005749,5.67e-07,7;UBERON:0004199,5.67e-07,7;UBERON:0004209,5.67e-07,7;UBERON:0004198,5.67e-07,7;UBERON:0005406,9.44e-07,2;UBERON:0002113,9.95e-07,26;UBERON:0003918,9.95e-07,26;UBERON:0011143,9.95e-07,26;UBERON:0005095,9.95e-07,26;UBERON:0007687,9.95e-07,26 | |||
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| ||
|short_description=p@chr2:176989037..176989043,+ | |||
}} | }} |
Latest revision as of 02:46, 29 July 2015
Short description: | p@chr2:176989037..176989043, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:176989037..176989043, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 4.28e-15 | 3 |
kidney cortex tubule cell | 4.28e-15 | 3 |
epithelial cell of proximal tubule | 4.28e-15 | 3 |
kidney cortical cell | 2.29e-14 | 12 |
renal cortical epithelial cell | 2.29e-14 | 12 |
meso-epithelial cell | 5.23e-14 | 45 |
perirenal preadipocyte | 2.93e-12 | 1 |
epithelial cell of nephron | 1.54e-11 | 15 |
kidney cell | 3.31e-10 | 17 |
kidney epithelial cell | 3.31e-10 | 17 |
endothelial cell | 4.25e-10 | 36 |
glomerular endothelial cell | 2.00e-09 | 5 |
lymphangioblast | 5.17e-08 | 6 |
endothelial cell of lymphatic vessel | 5.17e-08 | 6 |
vascular lymphangioblast | 5.17e-08 | 6 |
endothelial cell of vascular tree | 3.54e-07 | 24 |
glomerular cell | 5.67e-07 | 7 |
kidney corpuscule cell | 5.67e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 4.28e-15 | 3 |
region of nephron tubule | 4.28e-15 | 3 |
proximal tubule | 4.28e-15 | 3 |
cortex of kidney | 2.29e-14 | 12 |
renal parenchyma | 2.29e-14 | 12 |
lymphatic vessel | 1.49e-12 | 8 |
lymph vasculature | 1.49e-12 | 8 |
lymphatic part of lymphoid system | 1.49e-12 | 8 |
uterus or analog | 3.65e-12 | 1 |
cortex | 1.54e-11 | 15 |
nephron epithelium | 1.54e-11 | 15 |
renal tubule | 1.54e-11 | 15 |
parenchyma | 1.54e-11 | 15 |
nephron tubule | 1.54e-11 | 15 |
nephron | 1.54e-11 | 15 |
uriniferous tubule | 1.54e-11 | 15 |
nephrogenic mesenchyme | 1.54e-11 | 15 |
excretory tube | 7.84e-11 | 16 |
kidney epithelium | 7.84e-11 | 16 |
lymphoid system | 3.75e-10 | 10 |
primitive nephron | 5.67e-07 | 7 |
renal glomerulus | 5.67e-07 | 7 |
renal corpuscle | 5.67e-07 | 7 |
glomerular capsule | 5.67e-07 | 7 |
metanephric mesenchyme | 5.67e-07 | 7 |
glomerular tuft | 5.67e-07 | 7 |
S-shaped body | 5.67e-07 | 7 |
renal vesicle | 5.67e-07 | 7 |
comma-shaped body | 5.67e-07 | 7 |
perirenal fat | 9.44e-07 | 2 |
kidney | 9.95e-07 | 26 |
kidney mesenchyme | 9.95e-07 | 26 |
upper urinary tract | 9.95e-07 | 26 |
kidney rudiment | 9.95e-07 | 26 |
kidney field | 9.95e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 4.53e-12 | 1 |