FF:12240-129G8: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	chorionic membrane cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12380
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	chorion
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	NA
company	NA
collaboration	Hiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004848

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12380		CAGE		DRX008542		DRR009414

Accession ID Hg19

Library id		BAM		CTSS
CNhs12380		DRZ000839		DRZ002224

Accession ID Hg38

Library id		BAM		CTSS
CNhs12380		DRZ012189		DRZ013574

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004848

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10013.TTAGGC		sRNA-Seq		DRX037204		DRR041570

Accession ID Hg19

Library id		BAM		CTSS
SRhi10013.TTAGGC		DRZ007212

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.203
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.291
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.186
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.186
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.186
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.962
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.111
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.315
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.711
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.885
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.415
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.315
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.699
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.304
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.186
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.623
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.186
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.186
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	1.105
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00295
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.483
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.415
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0.365
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.186
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.157
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.359
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	1.305
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.186
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0.186
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.186
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	2.03
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12380

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.927
MA0003.1	MA0003.1	0.251
MA0004.1	MA0004.1	0.417
MA0006.1	MA0006.1	0.293
MA0007.1	MA0007.1	0.322
MA0009.1	MA0009.1	0.835
MA0014.1	MA0014.1	0.289
MA0017.1	MA0017.1	0.484
MA0018.2	MA0018.2	0.042
MA0019.1	MA0019.1	0.0618
MA0024.1	MA0024.1	0.00192
MA0025.1	MA0025.1	0.674
MA0027.1	MA0027.1	0.91
MA0028.1	MA0028.1	0.0676
MA0029.1	MA0029.1	0.484
MA0030.1	MA0030.1	0.526
MA0031.1	MA0031.1	0.0615
MA0035.2	MA0035.2	0.972
MA0038.1	MA0038.1	0.0229
MA0039.2	MA0039.2	0.642
MA0040.1	MA0040.1	0.825
MA0041.1	MA0041.1	0.818
MA0042.1	MA0042.1	0.958
MA0043.1	MA0043.1	0.0231
MA0046.1	MA0046.1	0.0555
MA0047.2	MA0047.2	0.0251
MA0048.1	MA0048.1	0.477
MA0050.1	MA0050.1	0.0741
MA0051.1	MA0051.1	0.187
MA0052.1	MA0052.1	0.403
MA0055.1	MA0055.1	0.548
MA0057.1	MA0057.1	0.509
MA0058.1	MA0058.1	0.466
MA0059.1	MA0059.1	0.822
MA0060.1	MA0060.1	8.64811e-8
MA0061.1	MA0061.1	0.202
MA0062.2	MA0062.2	0.00168
MA0065.2	MA0065.2	0.0423
MA0066.1	MA0066.1	0.125
MA0067.1	MA0067.1	0.149
MA0068.1	MA0068.1	0.198
MA0069.1	MA0069.1	0.99
MA0070.1	MA0070.1	0.824
MA0071.1	MA0071.1	0.967
MA0072.1	MA0072.1	0.541
MA0073.1	MA0073.1	0.883
MA0074.1	MA0074.1	0.312
MA0076.1	MA0076.1	0.00564
MA0077.1	MA0077.1	0.258
MA0078.1	MA0078.1	0.787
MA0079.2	MA0079.2	0.332
MA0080.2	MA0080.2	0.673
MA0081.1	MA0081.1	0.407
MA0083.1	MA0083.1	0.654
MA0084.1	MA0084.1	0.934
MA0087.1	MA0087.1	0.768
MA0088.1	MA0088.1	0.446
MA0090.1	MA0090.1	3.94883e-4
MA0091.1	MA0091.1	0.232
MA0092.1	MA0092.1	0.207
MA0093.1	MA0093.1	0.296
MA0099.2	MA0099.2	0.0162
MA0100.1	MA0100.1	0.171
MA0101.1	MA0101.1	0.821
MA0102.2	MA0102.2	0.772
MA0103.1	MA0103.1	0.00217
MA0104.2	MA0104.2	0.206
MA0105.1	MA0105.1	0.0212
MA0106.1	MA0106.1	0.301
MA0107.1	MA0107.1	0.452
MA0108.2	MA0108.2	0.00279
MA0111.1	MA0111.1	0.349
MA0112.2	MA0112.2	4.53127e-4
MA0113.1	MA0113.1	0.169
MA0114.1	MA0114.1	0.0957
MA0115.1	MA0115.1	0.453
MA0116.1	MA0116.1	0.00936
MA0117.1	MA0117.1	0.956
MA0119.1	MA0119.1	0.487
MA0122.1	MA0122.1	0.861
MA0124.1	MA0124.1	0.916
MA0125.1	MA0125.1	0.715
MA0131.1	MA0131.1	0.759
MA0135.1	MA0135.1	0.0965
MA0136.1	MA0136.1	0.136
MA0137.2	MA0137.2	0.524
MA0138.2	MA0138.2	0.658
MA0139.1	MA0139.1	0.205
MA0140.1	MA0140.1	0.972
MA0141.1	MA0141.1	0.765
MA0142.1	MA0142.1	0.0606
MA0143.1	MA0143.1	0.205
MA0144.1	MA0144.1	0.0142
MA0145.1	MA0145.1	0.0499
MA0146.1	MA0146.1	0.484
MA0147.1	MA0147.1	0.575
MA0148.1	MA0148.1	0.0612
MA0149.1	MA0149.1	0.661
MA0150.1	MA0150.1	0.791
MA0152.1	MA0152.1	0.0584
MA0153.1	MA0153.1	0.955
MA0154.1	MA0154.1	0.00908
MA0155.1	MA0155.1	0.35
MA0156.1	MA0156.1	0.12
MA0157.1	MA0157.1	0.147
MA0159.1	MA0159.1	0.0457
MA0160.1	MA0160.1	0.618
MA0162.1	MA0162.1	0.0907
MA0163.1	MA0163.1	0.0121
MA0164.1	MA0164.1	0.52
MA0258.1	MA0258.1	0.0679
MA0259.1	MA0259.1	0.891

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12380

Novel motif	Logo	P-value
1	1	0.149
10	10	0.344
100	100	0.956
101	101	0.514
102	102	0.597
103	103	0.0413
104	104	0.789
105	105	0.418
106	106	0.00651
107	107	0.0105
108	108	0.104
109	109	0.0394
11	11	0.193
110	110	0.067
111	111	0.427
112	112	0.108
113	113	0.00221
114	114	0.072
115	115	0.814
116	116	0.39
117	117	0.0826
118	118	0.0569
119	119	0.0695
12	12	0.345
120	120	0.0139
121	121	0.832
122	122	0.279
123	123	0.187
124	124	0.359
125	125	0.566
126	126	0.293
127	127	0.542
128	128	0.144
129	129	0.272
13	13	0.124
130	130	0.0733
131	131	0.483
132	132	0.202
133	133	0.274
134	134	0.21
135	135	0.487
136	136	0.229
137	137	0.742
138	138	0.398
139	139	0.331
14	14	0.93
140	140	0.714
141	141	0.967
142	142	0.381
143	143	0.856
144	144	0.661
145	145	0.201
146	146	0.43
147	147	0.378
148	148	0.457
149	149	0.103
15	15	0.156
150	150	0.174
151	151	0.309
152	152	0.0769
153	153	0.471
154	154	0.833
155	155	0.32
156	156	0.691
157	157	0.55
158	158	0.157
159	159	0.72
16	16	0.0503
160	160	0.136
161	161	0.52
162	162	0.623
163	163	0.641
164	164	0.236
165	165	0.228
166	166	0.802
167	167	0.872
168	168	0.57
169	169	0.0163
17	17	0.0534
18	18	0.246
19	19	0.0646
2	2	0.431
20	20	0.89
21	21	0.763
22	22	0.282
23	23	0.00946
24	24	0.946
25	25	0.664
26	26	0.153
27	27	0.253
28	28	0.841
29	29	0.151
3	3	0.132
30	30	0.266
31	31	0.494
32	32	0.00688
33	33	0.417
34	34	0.81
35	35	0.439
36	36	0.521
37	37	0.146
38	38	0.503
39	39	0.284
4	4	0.706
40	40	0.069
41	41	0.774
42	42	0.908
43	43	0.14
44	44	0.0449
45	45	0.276
46	46	0.118
47	47	0.746
48	48	0.451
49	49	0.365
5	5	0.258
50	50	0.618
51	51	0.388
52	52	0.3
53	53	0.491
54	54	0.739
55	55	0.0469
56	56	0.749
57	57	0.251
58	58	0.73
59	59	0.0554
6	6	0.77
60	60	0.048
61	61	0.853
62	62	0.3
63	63	0.423
64	64	0.426
65	65	0.0883
66	66	0.103
67	67	0.648
68	68	0.73
69	69	0.513
7	7	0.21
70	70	0.0116
71	71	0.105
72	72	0.326
73	73	0.126
74	74	0.849
75	75	0.157
76	76	0.79
77	77	0.032
78	78	0.314
79	79	0.143
8	8	0.218
80	80	0.831
81	81	0.438
82	82	0.0857
83	83	0.548
84	84	0.127
85	85	0.00658
86	86	0.924
87	87	0.354
88	88	0.606
89	89	0.0806
9	9	0.477
90	90	0.51
91	91	0.375
92	92	0.23
93	93	0.96
94	94	0.125
95	95	0.398
96	96	0.95
97	97	0.194
98	98	0.441
99	99	0.446

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12380

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000038 human chorionic membrane stem cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002541 (chorionic membrane mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000476 (acellular anatomical structure)
0000478 (extraembryonic structure)
0000158 (membranous layer)
0003124 (chorion)
0000920 (egg chorion)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000038 (human chorionic membrane stem cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004848
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004848
+|accession_numbers=CAGE;DRX008542;DRR009414;DRZ000839;DRZ002224;DRZ012189;DRZ013574
+|accession_numbers_RNASeq=sRNA-Seq;DRX037204;DRR041570;DRZ007212
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000476,UBERON:0000478,UBERON:0000158,UBERON:0003124,UBERON:0000920
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002541
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:8096631..8096660,+!p1@GATA3!2.49!372.06!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.41!254.79!PEG3;;chr3:12330560..12330579,+!p1@PPARG!2.35!252.66!PPARG;;chr19:45971246..45971265,+!p1@FOSB!2.27!3231.26!FOSB;;chr6:53013620..53013644,-!p1@GCM1!2.22!166.84!GCM1;;chr10:8096772..8096787,+!p2@GATA3!2.13!158.31!GATA3;;chr2:46524897..46524911,+!p2@EPAS1!1.99!258.52!EPAS1;;chr14:75746722..75746777,+!p2@FOS!1.99!123.13!FOS;;chr1:6479968..6479986,-!p1@HES2!1.99!96.48!HES2;;chr14:75745523..75745537,+!p1@FOS!1.93!9349.96!FOS;;chrX:70316005..70316034,+!p2@FOXO4!1.81!110.87!FOXO4;;chr10:8097321..8097348,+!p4@GATA3!1.76!57.03!GATA3;;chr20:55204351..55204377,+!p1@TFAP2C!1.74!68.23!TFAP2C;;chr9:110252035..110252057,-!p1@KLF4!1.72!780.90!KLF4;;chr11:2291814..2291825,-!p2@ASCL2!1.72!51.70!ASCL2;;chr1:209979467..209979494,-!p1@IRF6!1.66!50.11!IRF6;;chr2:46612891..46612907,+!p10@EPAS1!1.62!40.51!EPAS1;;chr6:10412600..10412637,-!p1@TFAP2A!1.61!64.50!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.61!48.51!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.60!38.91!IRX2;;chr5:2751762..2751784,-!p1@IRX2!1.58!37.31!IRX2;;chr6:10415484..10415508,-!p3@TFAP2A!1.57!36.25!TFAP2A;;chr8:102504651..102504683,+!p1@GRHL2!1.56!35.71!GRHL2;;chr3:111314186..111314204,-!p1@ZBED2!1.53!33.05!ZBED2;;chr11:12696102..12696113,+!p5@TEAD1!1.52!31.98!TEAD1;;chr10:114710244..114710257,+!p3@TCF7L2!1.51!82.62!TCF7L2;;chr13:73633131..73633149,+!p1@KLF5!1.50!311.29!KLF5;;chr16:85932760..85932775,+!p1@IRF8!1.50!30.92!IRF8;;chr1:212782094..212782109,+!p1@ATF3!1.49!776.63!ATF3;;chr1:201979743..201979762,+!p1@ELF3!1.49!29.85!ELF3;;chr17:48072574..48072597,-!p1@DLX3!1.49!29.85!DLX3;;chr10:8097295..8097320,+!p6@GATA3!1.47!28.25!GATA3;;chr6:53013605..53013616,-!p2@GCM1!1.46!27.72!GCM1;;chr1:201979703..201979721,+!p2@ELF3!1.45!27.18!ELF3;;chr5:137804484..137804498,+!p2@EGR1!1.43!100.74!EGR1;;chr7:1577899..1577943,+!p3@MAFK!1.42!25.59!MAFK;;chr2:68592406..68592424,+!p1@PLEK!1.42!25.05!PLEK;;chr8:135708787..135708805,-!p2@ZFAT!1.41!24.52!ZFAT;;chr14:75746781..75746799,+!p6@FOS!1.41!24.52!FOS;;chr4:174451370..174451387,-!p1@HAND2!1.39!23.45!HAND2;;chr10:8095593..8095625,+!p3@GATA3!1.37!26.12!GATA3;;chr19:33793430..33793447,-!p1@CEBPA!1.35!87.95!CEBPA;;chr14:75746705..75746720,+!p8@FOS!1.34!20.79!FOS;;chr3:128206762..128206781,-!p2@GATA2!1.33!123.13!GATA2;;chr4:87857474..87857489,+!p7@AFF1!1.32!34.11!AFF1;;chr6:10419884..10419898,-!p11@TFAP2A!1.32!19.72!TFAP2A;;chr2:46524878..46524891,+!p3@EPAS1!1.31!34.11!EPAS1;;chr14:75747296..75747329,+!p4@FOS!1.31!19.19!FOS;;chrX:70316072..70316085,+!p4@FOXO4!1.31!19.19!FOXO4;;chr9:77112244..77112262,+!p1@RORB!1.30!21.32!RORB;;chr1:59249732..59249749,-!p2@JUN!1.29!216.95!JUN;;chr19:45977697..45977713,+!p4@FOSB!1.28!18.12!FOSB;;chr19:45977993..45978005,+!p6@FOSB!1.27!17.59!FOSB;;chrX:70319128..70319142,+!p3@FOXO4!1.27!17.59!FOXO4;;chr8:102504690..102504704,+!p3@GRHL2!1.27!17.59!GRHL2;;chr14:35872453..35872485,-!p2@NFKBIA!1.26!42.11!NFKBIA;;chr19:45974032..45974054,+!p9@FOSB!1.26!17.06!FOSB;;chr19:45977759..45977770,+!p10@FOSB!1.26!17.06!FOSB;;chr8:102504979..102505010,+!p2@GRHL2!1.26!17.06!GRHL2;;chr19:20278043..20278054,+!p2@ZNF486!1.24!16.52!ZNF486;;chr19:45972203..45972226,+!p5@FOSB!1.24!16.52!FOSB;;chr19:929027..929051,+!p4@ARID3A!1.24!16.52!ARID3A;;chrX:70316101..70316112,+!p5@FOXO4!1.24!16.52!FOXO4;;chr5:137801160..137801176,+!p1@EGR1!1.23!1563.39!EGR1;;chrX:56258844..56258882,+!p1@KLF8!1.23!21.85!KLF8;;chr12:19556960..19556982,+!p10@AEBP2!1.23!15.99!AEBP2;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.46!SPI1;;chr1:40367668..40367684,-!p2@MYCL1!1.22!15.46!MYCL1;;chr16:31076332..31076388,-!p3@ZNF668!1.22!15.46!ZNF668;;chr5:137804130..137804156,+!p5@EGR1!1.20!15.99!EGR1;;chr3:128212033..128212051,-!p1@GATA2!1.20!14.92!GATA2;;chr11:2292226..2292270,-!p1@ASCL2!1.20!14.92!ASCL2;;chr17:7493405..7493419,-!p1@SOX15!1.19!14.39!SOX15;;chr9:127358120..127358170,-!p3@NR6A1!1.19!14.39!NR6A1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.18!122.60!PPP1R13L;;chr13:73636252..73636307,+!p2@KLF5!1.18!16.52!KLF5;;chr2:46602879..46602899,+!p8@EPAS1!1.17!16.52!EPAS1;;chr3:39196049..39196062,-!p5@CSRNP1!1.17!13.86!CSRNP1;;chr1:42801540..42801562,-!p4@FOXJ3!1.17!13.86!FOXJ3;;chr2:46602901..46602926,+!p7@EPAS1!1.16!18.12!EPAS1;;chr5:137804357..137804390,+!p4@EGR1!1.16!15.99!EGR1;;chr7:96654133..96654150,-!p1@DLX5!1.16!13.33!DLX5;;chr3:189507432..189507459,+!p1@TP63!1.16!13.33!TP63;;chr3:101568349..101568365,+!p1@NFKBIZ!1.13!643.91!NFKBIZ;;chr8:99956662..99956684,+!p1@OSR2!1.13!19.19!OSR2;;chr21:36260773..36260804,-!p7@RUNX1!1.13!17.06!RUNX1;;chr7:28725715..28725727,+!p3@CREB5!1.13!14.92!CREB5;;chr6:10412392..10412409,-!p4@TFAP2A!1.13!14.39!TFAP2A;;chr13:73636516..73636532,+!p3@KLF5!1.12!13.86!KLF5;;chr19:45974146..45974170,+!p7@FOSB!1.12!12.26!FOSB;;chr22:19748231..19748317,+!p1@TBX1!1.12!12.26!TBX1;;chr2:10091815..10091864,+!p1@GRHL1!1.11!15.99!GRHL1;;chr2:157189180..157189290,-!p1@NR4A2!1.10!61.30!NR4A2;;chr19:45977916..45977932,+!p13@FOSB!1.10!11.73!FOSB;;chr7:115670804..115670825,-!p1@TFEC!1.09!11.19!TFEC;;chrX:131547625..131547644,-!p4@MBNL3!1.09!11.19!MBNL3;;chr20:39317868..39317884,-!p1@MAFB!1.08!130.59!MAFB;;chr19:22235279..22235301,+!p1@ZNF257!1.07!20.26!ZNF257;;chr19:17356189..17356221,-!p2@NR2F6!1.07!17.59!NR2F6;;chr20:62680984..62680999,-!p1@SOX18!1.07!14.39!SOX18;;chr5:137804405..137804444,+!p3@EGR1!1.07!12.79!EGR1;;chr6:10419768..10419819,-!p6@TFAP2A!1.07!10.66!TFAP2A;;chr14:75747250..75747267,+!p5@FOS!1.07!10.66!FOS;;chr20:18038521..18038571,-!p1@OVOL2!1.07!10.66!OVOL2;;chr10:64576105..64576133,-!p1@EGR2!1.06!21.85!EGR2;;chr11:12696071..12696086,+!p3@TEAD1!1.06!13.86!TEAD1;;chr14:35873947..35873965,-!p1@NFKBIA!1.05!653.50!NFKBIA;;chr9:102584159..102584174,+!p2@NR4A3!1.05!18.66!NR4A3;;chr12:19556998..19557013,+!p6@AEBP2!1.05!10.13!AEBP2;;chr3:32023232..32023273,+!p1@ZNF860!1.04!14.39!ZNF860;;chr2:46524537..46524553,+!p1@EPAS1!1.03!958.93!EPAS1;;chr3:141719209..141719215,-!p10@TFDP2!1.03!9.59!TFDP2;;chr10:8100691..8100732,+!p5@GATA3!1.03!9.59!GATA3;;chr21:39870339..39870443,-!p1@ERG!1.03!9.59!ERG;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.59!TFAP2A;;chr14:75746687..75746702,+!p10@FOS!1.03!9.59!FOS;;chr1:59249688..59249703,-!p3@JUN!1.01!57.03!JUN;;chr10:51572408..51572454,+!p3@NCOA4!1.01!54.90!NCOA4;;chr11:2292201..2292212,-!p3@ASCL2!1.00!9.06!ASCL2;;chr2:16080659..16080685,+!p1@MYCN!1.00!9.06!MYCN;;chr16:67881534..67881549,-!p4@CENPT!1.00!9.06!CENPT;;chr1:59249707..59249727,-!p1@JUN!0.99!376.32!JUN;;chr19:53496768..53496799,-!p1@ZNF702P!0.99!13.86!ZNF702P;;chr19:20278012..20278034,+!p1@ZNF486!0.97!72.49!ZNF486;;chr14:35872962..35873025,-!p3@NFKBIA!0.97!21.32!NFKBIA;;chr19:926055..926068,+!p2@ARID3A!0.97!18.66!ARID3A;;chr2:46612334..46612349,+!p6@EPAS1!0.97!11.19!EPAS1;;chr8:28243785..28243799,-!p6@ZNF395!0.97!10.13!ZNF395;;chr16:67881588..67881612,-!p2@CENPT!0.96!11.19!CENPT;;chr7:1577952..1577963,+!p8@MAFK!0.95!8.00!MAFK;;chr19:12902289..12902307,+!p1@JUNB!0.94!1819.25!JUNB;;chr4:87857491..87857519,+!p10@AFF1!0.94!10.66!AFF1;;chr13:45010939..45011033,-!p1@TSC22D1!0.93!517.58!TSC22D1;;chr6:126240442..126240459,+!p4@NCOA7!0.93!9.59!NCOA7;;chrX:56258900..56258917,+!p4@KLF8!0.93!7.46!KLF8;;chr12:52445218..52445237,+!p1@NR4A1!0.92!96.48!NR4A1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.92!73.56!ZNF595;;chr10:35484053..35484076,+!p1@CREM!0.92!18.66!CREM;;chrX:129244655..129244697,-!p4@ELF4!0.92!13.33!ELF4;;chr6:1312325..1312340,+!p1@FOXQ1!0.92!12.26!FOXQ1;;chr19:45972701..45972774,+!p2@FOSB!0.92!10.13!FOSB;;chr22:38598086..38598105,+!p1@MAFF!0.90!77.29!MAFF;;chr1:41827095..41827155,+!p1@FOXO6!0.90!9.59!FOXO6;;chr1:23694556..23694584,-!p6@ZNF436!0.90!9.06!ZNF436;;chr19:45974005..45974026,+!p11@FOSB!0.90!6.93!FOSB;;chr19:48773337..48773339,+!p2@ZNF114!0.90!6.93!ZNF114;;chr12:19556947..19556956,+!p14@AEBP2!0.90!6.93!AEBP2;;chr17:80797886..80797906,-!p1@ZNF750!0.90!6.93!ZNF750;;chr3:24536253..24536328,-!p1@THRB!0.89!13.33!THRB;;chr7:28725740..28725778,+!p1@CREB5!0.87!60.23!CREB5;;chr2:70314240..70314256,+!p4@PCBP1!0.87!13.86!PCBP1;;chr20:50179368..50179392,-!p2@NFATC2!0.87!8.53!NFATC2;;chr2:46524865..46524870,+!p9@EPAS1!0.87!7.46!EPAS1;;chr20:18038486..18038520,-!p2@OVOL2!0.87!6.40!OVOL2;;chr10:8097357..8097368,+!p15@GATA3!0.87!6.40!GATA3;;chr13:73636310..73636330,+!p5@KLF5!0.87!6.40!KLF5;;chr19:926001..926046,+!p1@ARID3A!0.86!22.92!ARID3A;;chr18:3449720..3449749,+!p2@TGIF1!0.86!13.86!TGIF1;;chr8:28243813..28243839,-!p4@ZNF395!0.86!11.73!ZNF395;;chr19:11925071..11925113,+!p1@ZNF440!0.85!46.91!ZNF440;;chr10:3824332..3824425,-!p4@KLF6!0.85!10.13!KLF6;;chr18:51690935..51690957,-!p8@MBD2!0.85!9.06!MBD2;;chr2:231084820..231084836,-!p5@SP110!0.84!6.93!SP110;;chr14:75746579..75746605,+!p9@FOS!0.84!5.86!FOS;;chr6:10419824..10419840,-!p9@TFAP2A!0.84!5.86!TFAP2A;;chr6:29648890..29648944,-!p1@ZFP57!0.84!5.86!ZFP57;;chr7:96635178..96635181,+!p1@DLX6!0.84!5.86!DLX6;;chr8:81787006..81787031,-!p2@ZNF704!0.84!5.86!ZNF704;;chr1:23694532..23694549,-!p8@ZNF436!0.84!5.86!ZNF436;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.86!KDM5D;;chrX:56258885..56258896,+!p5@KLF8!0.84!5.86!KLF8;;chr2:70142232..70142251,+!p1@MXD1!0.83!34.65!MXD1;;chr8:80679993..80680011,-!p1@HEY1!0.83!8.53!HEY1;;chr12:72056800..72056834,+!p1@THAP2!0.83!8.00!THAP2;;chr15:96869511..96869525,+!p16@NR2F2!0.83!6.40!NR2F2;;chr8:103667935..103667960,-!p1@KLF10!0.82!269.72!KLF10;;chr10:111967345..111967422,+!p1@MXI1!0.82!98.08!MXI1;;chrX:129244454..129244488,-!p1@ELF4!0.82!43.18!ELF4;;chr7:1577111..1577132,+!p4@MAFK!0.82!6.40!MAFK;;chrX:106960285..106960299,-!p1@TSC22D3!0.81!158.31!TSC22D3;;chr8:22550982..22550999,-!p1@EGR3!0.81!16.52!EGR3;;chr6:126240380..126240430,+!p2@NCOA7!0.81!14.92!NCOA7;;chr14:75988771..75988826,+!p1@BATF!0.81!7.46!BATF;;chr10:48355030..48355090,+!p1@ZNF488!0.80!6.93!ZNF488;;chr12:54778471..54778528,-!p1@ZNF385A!0.80!5.33!ZNF385A;;chr14:75745247..75745251,+!p14@FOS!0.80!5.33!FOS;;chr14:75746613..75746623,+!p11@FOS!0.80!5.33!FOS;;chr19:52408192..52408200,-!p4@ZNF6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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002541;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg38.nobarcode.ctss.bed.gz
 |id=FF:12240-129G8
 |is_a=EFO:0002091;;FF:0000038
 |is_obsolete=
+|library_id=CNhs12380
+|library_id_phase_based=2:CNhs12380
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12240
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TTAGGC.12240
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12240
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TTAGGC.12240
 |name=chorionic membrane cells, donor3
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12380,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10013,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
 |repeat_enrich_byfamily=0,0,0.092776003344243,0,0.337487646980437,0,0,0.403776552812639,0,0.69152956375746,0.436437392474308,0,0,0,0.185552006688486,0,0,0,0,0,0.185552006688486,0,0,0,0.648104558465361,0,0.092776003344243,0,0.157572468746099,0,0.623380936669003,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.185552006688486,0,0.767247756669534,0.315144937492197,0,0,0.315144937492197,0,0,0,0,0.133357447633264,0,0,0,0,0,0,0,0.317831351190158,0,0,-0.097343627213097,0,0,0,0,0,0,0,0.127821549634822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192309447136098,-0.211197402695869,0,0.185552006688486,0.092776003344243,0,-0.0980353512377064,0.394885026882785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.185552006688486,0,0,0.706725800632587,0.932094032603026,0,0,0.185552006688486,0,0,0
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@@ Line 62: / Line 82: @@
 |rna_tube_id=129G8
 |rna_weight_ug=11.46042
+|rnaseq_library_id=SRhi10013.TTAGGC
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 84: / Line 106: @@
 |top_motifs=NKX2-1,4:2.26814339562;EP300:2.21924163455;HMX1:2.06347404371;UFEwm:1.95381577387;FOXL1:1.81299465544;IKZF1:1.80428687345;TBP:1.71079587481;STAT2,4,6:1.58561133193;SNAI1..3:1.56545158888;FOXO1,3,4:1.55284775736;RORA:1.5211736619;FOXM1:1.50817244524;FOX{D1,D2}:1.43133931365;GZF1:1.30628910101;BPTF:1.24010809959;GCM1,2:1.23043272391;EBF1:1.214529136;T:1.13259325945;HOXA9_MEIS1:1.09249897285;AR:1.08159231628;HIF1A:1.07868194363;EVI1:1.04556665299;PAX4:1.04372897535;EN1,2:1.04040397822;IRF7:0.985129877356;TBX4,5:0.981179186657;ALX4:0.968274726851;TLX2:0.950107435593;SMAD1..7,9:0.89463098363;CDC5L:0.875660188651;TEAD1:0.871045864307;RXRA_VDR{dimer}:0.865837147583;FOXP3:0.794499785755;MAFB:0.789578915805;XCPE1{core}:0.779966501305;IRF1,2:0.765057342822;AIRE:0.718724048471;HSF1,2:0.693512233342;SPZ1:0.673640059266;HMGA1,2:0.637078037087;HLF:0.594155276833;ZBTB16:0.564177582814;ZEB1:0.547130168572;MYBL2:0.543823874552;GLI1..3:0.537896049116;POU3F1..4:0.526990387636;KLF4:0.513352800083;PAX1,9:0.502332014245;POU2F1..3:0.497016607247;TFAP2{A,C}:0.472237045642;NKX3-2:0.467494726068;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.466461863589;SOX5:0.448633778001;ARID5B:0.409971463919;ZNF148:0.401383973414;TP53:0.341505731536;GATA6:0.332600916587;ONECUT1,2:0.321473226365;NR6A1:0.319548246249;FOS_FOS{B,L1}_JUN{B,D}:0.312073302743;BACH2:0.281802187824;PPARG:0.269580262161;SRF:0.268747853172;ZBTB6:0.264754131952;NKX2-2,8:0.246082841813;MED-1{core}:0.241042559506;ESR1:0.232563977717;bHLH_family:0.217195501921;SP1:0.206616506137;FOXN1:0.194764707326;MYOD1:0.178493234517;ATF6:0.174187770384;POU1F1:0.158838521336;NFKB1_REL_RELA:0.153279847264;ZNF238:0.14161408756;NFIL3:0.129765065257;FOSL2:0.127464612161;IKZF2:0.0897318809261;RXR{A,B,G}:0.087406985661;MAZ:0.0850174610345;SPI1:0.0811765940092;STAT1,3:0.073164294;ETS1,2:0.0500858676584;GATA4:0.0402293752865;HOX{A4,D4}:0.0309832165727;PRDM1:0.0208055297304;PAX2:0.00877069651787;MTE{core}:-0.00684878206289;HOX{A6,A7,B6,B7}:-0.0106100063383;PAX3,7:-0.0141834324317;NKX3-1:-0.0179250604255;HNF1A:-0.0494673494362;FOXQ1:-0.060142744369;XBP1:-0.0610326062512;SPIB:-0.0634640415936;GTF2I:-0.0683702329794;RUNX1..3:-0.0737630043156;TFAP4:-0.0748954045735;JUN:-0.100360934712;ZNF384:-0.100721532266;CEBPA,B_DDIT3:-0.125116313544;ZNF423:-0.138922950196;TFCP2:-0.139565795807;NANOG{mouse}:-0.141554789754;DBP:-0.151013735962;PAX8:-0.186313068248;NFE2:-0.205545798664;NR1H4:-0.211302388894;NFATC1..3:-0.226093697213;PATZ1:-0.231267819708;HNF4A_NR2F1,2:-0.231795206429;SOX17:-0.259784044607;OCT4_SOX2{dimer}:-0.29643254572;SREBF1,2:-0.321354307198;CREB1:-0.326017993405;TAL1_TCF{3,4,12}:-0.377872900314;NR3C1:-0.380795991072;HAND1,2:-0.384885122559;ELF1,2,4:-0.392061613138;TOPORS:-0.405736815145;ATF4:-0.427153989149;TEF:-0.452952105419;ATF2:-0.45798852593;TLX1..3_NFIC{dimer}:-0.464542041611;MYFfamily:-0.486228870303;POU6F1:-0.490599953735;MEF2{A,B,C,D}:-0.492292553359;ATF5_CREB3:-0.503179314789;TFAP2B:-0.503725430782;MTF1:-0.532094735172;FOX{I1,J2}:-0.539665826804;ZIC1..3:-0.54140654104;ZFP161:-0.545269138959;HIC1:-0.566519389586;DMAP1_NCOR{1,2}_SMARC:-0.605107174564;REST:-0.611297537959;EGR1..3:-0.627715089487;FOXD3:-0.632267821823;HES1:-0.633604846333;RREB1:-0.65426968149;FOX{F1,F2,J1}:-0.66299846474;MZF1:-0.675083688009;CDX1,2,4:-0.685167362619;RFX2..5_RFXANK_RFXAP:-0.68915560161;ELK1,4_GABP{A,B1}:-0.693566509402;GTF2A1,2:-0.705236981521;PAX6:-0.722188305834;STAT5{A,B}:-0.770513165331;TGIF1:-0.784518301017;NFE2L1:-0.793464390256;HOX{A5,B5}:-0.833615260491;RFX1:-0.841226618191;HBP1_HMGB_SSRP1_UBTF:-0.843852301419;NFE2L2:-0.851743017568;ESRRA:-0.863993369336;CUX2:-0.907754939158;PDX1:-0.913205400546;PAX5:-0.918001559931;VSX1,2:-0.92814905498;LMO2:-0.935148864446;AHR_ARNT_ARNT2:-0.944743456856;E2F1..5:-0.953078947619;ALX1:-0.968014647978;NHLH1,2:-0.981596576301;GFI1B:-1.01984318362;LEF1_TCF7_TCF7L1,2:-1.0257812254;ZNF143:-1.03537137585;NFY{A,B,C}:-1.09862429486;SOX2:-1.12180906441;NRF1:-1.13667208926;MYB:-1.15864520908;GFI1:-1.16125930554;FOXP1:-1.16664004359;SOX{8,9,10}:-1.24015574208;PITX1..3:-1.25271078539;NFIX:-1.36774345967;NKX2-3_NKX2-5:-1.42845948715;PRRX1,2:-1.44765852392;BREu{core}:-1.45898106034;YY1:-1.45995466856;RBPJ:-1.54394688303;FOXA2:-1.55703863894;PBX1:-1.56144466078;ADNP_IRX_SIX_ZHX:-1.56499472558;NR5A1,2:-1.64055019847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.68011478333;LHX3,4:-1.78405853562;TFDP1:-1.80455850369;CRX:-2.12749331887;POU5F1:-2.1726388458;NANOG:-2.36988958196;NKX6-1,2:-2.67279176287
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12240-129G8;search_select_hide=table117:FF:12240-129G8
 }}

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FF:12240-129G8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:36, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0