FFCP PHASE1:Hg19::chr2:177016336..177016350,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3233 | |EntrezGene=3233 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5138 | |HGNC=5138 | ||
|TSSclassifier=strong | |||
|UniProt=P09016 | |UniProt=P09016 | ||
|association_with_transcript=223bp_to_NM_014621,uc002uks.2_5end | |association_with_transcript=223bp_to_NM_014621,uc002uks.2_5end | ||
|cluster_id=chr2:177016336..177016350,+ | |||
|description=CAGE_peak_1_at_HOXD4_5end | |description=CAGE_peak_1_at_HOXD4_5end | ||
|id=chr2:177016336..177016350,+ | |id=chr2:177016336..177016350,+ | ||
|ontology_enrichment_celltype=CL:1000507!3.89e-17!12;CL:1000494!3.89e-17!12;CL:1000449!1.83e-14!16;CL:1000497!1.94e-14!18;CL:0002518!1.94e-14!18;CL:0002620!2.32e-13!23;CL:0002681!5.08e-10!13;CL:0002584!5.08e-10!13;CL:0000239!8.80e-07!3;CL:1000615!8.80e-07!3;CL:0002306!8.80e-07!3 | |ontology_enrichment_celltype=CL:1000507!3.89e-17!12;CL:1000494!3.89e-17!12;CL:1000449!1.83e-14!16;CL:1000497!1.94e-14!18;CL:0002518!1.94e-14!18;CL:0002620!2.32e-13!23;CL:0002681!5.08e-10!13;CL:0002584!5.08e-10!13;CL:0000239!8.80e-07!3;CL:1000615!8.80e-07!3;CL:0002306!8.80e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:1000507;8.18e-47;10!CL:1000494;8.18e-47;10!CL:1000449;7.98e-37;15!CL:1000497;3.15e-32;17!CL:0002518;3.15e-32;17!CL:0002681;1.60e-24;12!CL:0002584;1.60e-24;12!CL:0000239;8.92e-16;3!CL:1000615;8.92e-16;3!CL:0002306;8.92e-16;3!CL:0000650;1.93e-10;2!CL:1000500;1.93e-10;2!CL:1000618;1.93e-10;2!CL:1001318;1.93e-10;2!CL:0002173;1.93e-10;2!CL:0000159;4.01e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.44e-46,10;CL:1000494,1.44e-46,10;CL:1000449,1.36e-36,15;CL:1000497,5.03e-32,17;CL:0002518,5.03e-32,17;CL:0002681,2.91e-24,12;CL:0002584,2.91e-24,12;CL:0000239,9.20e-16,3;CL:1000615,9.20e-16,3;CL:0002306,9.20e-16,3;CL:0000650,3.50e-10,2;CL:1000500,3.50e-10,2;CL:1000618,3.50e-10,2;CL:1001318,3.50e-10,2;CL:0002173,3.50e-10,2;CL:0000159,4.02e-10,2 | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.56e-11;2 | |||
|ontology_enrichment_disease=DOID:17!2.54e-08!5;DOID:450!2.54e-08!5;DOID:66!2.54e-08!5;DOID:423!2.54e-08!5;DOID:0080000!2.54e-08!5;DOID:11722!2.54e-08!5 | |ontology_enrichment_disease=DOID:17!2.54e-08!5;DOID:450!2.54e-08!5;DOID:66!2.54e-08!5;DOID:423!2.54e-08!5;DOID:0080000!2.54e-08!5;DOID:11722!2.54e-08!5 | ||
|ontology_enrichment_disease_v019=DOID:0060084;5.05e-07;3!DOID:127;5.05e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.63e-07,3;DOID:127,2.63e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000489!3.42e-22!32;UBERON:0000080!1.16e-17!18;UBERON:0002120!1.16e-17!18;UBERON:0004875!1.16e-17!18;UBERON:0005721!1.16e-17!18;UBERON:0005754!1.16e-17!18;UBERON:0007297!1.16e-17!18;UBERON:0009773!3.89e-17!12;UBERON:0001231!3.89e-17!12;UBERON:0004810!3.89e-17!12;UBERON:0006554!7.74e-17!44;UBERON:0003887!1.51e-16!21;UBERON:0001008!2.71e-16!45;UBERON:0006555!4.78e-16!17;UBERON:0005103!4.78e-16!17;UBERON:0000083!4.78e-16!17;UBERON:0009201!4.78e-16!17;UBERON:0004819!4.78e-16!17;UBERON:0006553!4.78e-16!17;UBERON:0003074!4.78e-16!17;UBERON:0003060!4.78e-16!17;UBERON:0002113!8.03e-16!27;UBERON:0003918!8.03e-16!27;UBERON:0005095!8.03e-16!27;UBERON:0007687!8.03e-16!27;UBERON:0004876!1.88e-15!20;UBERON:0004211!1.83e-14!16;UBERON:0001285!1.83e-14!16;UBERON:0007684!1.83e-14!16;UBERON:0003220!1.83e-14!16;UBERON:0004208!1.83e-14!16;UBERON:0000058!8.46e-13!26;UBERON:0002199!3.09e-12!45;UBERON:0002416!3.09e-12!45;UBERON:0003064!3.14e-11!37;UBERON:0002097!1.39e-10!40;UBERON:0001225!5.08e-10!13;UBERON:0008987!5.08e-10!13;UBERON:0003103!5.75e-10!69;UBERON:0003076!8.73e-10!15;UBERON:0003057!8.73e-10!15;UBERON:0005172!1.42e-08!55;UBERON:0005173!1.42e-08!55;UBERON:0003886!1.60e-08!63;UBERON:0002553!7.88e-08!70;UBERON:0001851!9.98e-08!16;UBERON:0000475!1.15e-07!365;UBERON:0002417!3.54e-07!61;UBERON:0000916!3.54e-07!61;UBERON:0002298!3.67e-07!8;UBERON:0000353!3.80e-07!17;UBERON:0005910!4.51e-07!6;UBERON:0006947!6.95e-07!3;UBERON:0004054!6.95e-07!3;UBERON:0006853!8.80e-07!3;UBERON:0007685!8.80e-07!3;UBERON:0004134!8.80e-07!3;UBERON:0005177!9.93e-07!107 | |ontology_enrichment_uberon=UBERON:0000489!3.42e-22!32;UBERON:0000080!1.16e-17!18;UBERON:0002120!1.16e-17!18;UBERON:0004875!1.16e-17!18;UBERON:0005721!1.16e-17!18;UBERON:0005754!1.16e-17!18;UBERON:0007297!1.16e-17!18;UBERON:0009773!3.89e-17!12;UBERON:0001231!3.89e-17!12;UBERON:0004810!3.89e-17!12;UBERON:0006554!7.74e-17!44;UBERON:0003887!1.51e-16!21;UBERON:0001008!2.71e-16!45;UBERON:0006555!4.78e-16!17;UBERON:0005103!4.78e-16!17;UBERON:0000083!4.78e-16!17;UBERON:0009201!4.78e-16!17;UBERON:0004819!4.78e-16!17;UBERON:0006553!4.78e-16!17;UBERON:0003074!4.78e-16!17;UBERON:0003060!4.78e-16!17;UBERON:0002113!8.03e-16!27;UBERON:0003918!8.03e-16!27;UBERON:0005095!8.03e-16!27;UBERON:0007687!8.03e-16!27;UBERON:0004876!1.88e-15!20;UBERON:0004211!1.83e-14!16;UBERON:0001285!1.83e-14!16;UBERON:0007684!1.83e-14!16;UBERON:0003220!1.83e-14!16;UBERON:0004208!1.83e-14!16;UBERON:0000058!8.46e-13!26;UBERON:0002199!3.09e-12!45;UBERON:0002416!3.09e-12!45;UBERON:0003064!3.14e-11!37;UBERON:0002097!1.39e-10!40;UBERON:0001225!5.08e-10!13;UBERON:0008987!5.08e-10!13;UBERON:0003103!5.75e-10!69;UBERON:0003076!8.73e-10!15;UBERON:0003057!8.73e-10!15;UBERON:0005172!1.42e-08!55;UBERON:0005173!1.42e-08!55;UBERON:0003886!1.60e-08!63;UBERON:0002553!7.88e-08!70;UBERON:0001851!9.98e-08!16;UBERON:0000475!1.15e-07!365;UBERON:0002417!3.54e-07!61;UBERON:0000916!3.54e-07!61;UBERON:0002298!3.67e-07!8;UBERON:0000353!3.80e-07!17;UBERON:0005910!4.51e-07!6;UBERON:0006947!6.95e-07!3;UBERON:0004054!6.95e-07!3;UBERON:0006853!8.80e-07!3;UBERON:0007685!8.80e-07!3;UBERON:0004134!8.80e-07!3;UBERON:0005177!9.93e-07!107 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;8.18e-47;10!UBERON:0009773;8.18e-47;10!UBERON:0001231;8.18e-47;10!UBERON:0004810;8.18e-47;10!UBERON:0006555;7.98e-37;15!UBERON:0004819;7.98e-37;15!UBERON:0001285;7.98e-37;15!UBERON:0007684;7.98e-37;15!UBERON:0000489;5.78e-34;29!UBERON:0006554;1.02e-32;30!UBERON:0001008;1.02e-32;30!UBERON:0002113;2.14e-31;24!UBERON:0011143;2.14e-31;24!UBERON:0001225;1.60e-24;12!UBERON:0008987;1.60e-24;12!UBERON:0001851;2.31e-19;15!UBERON:0000353;2.31e-19;15!UBERON:0006947;5.07e-16;3!UBERON:0004054;5.07e-16;3!UBERON:0006853;8.92e-16;3!UBERON:0007685;8.92e-16;3!UBERON:0004134;8.92e-16;3!UBERON:0001896;1.22e-14;3!UBERON:0005290;1.22e-14;3!UBERON:0005904;3.93e-12;4!UBERON:0003567;1.93e-10;2!UBERON:0003838;1.93e-10;2!UBERON:0003586;1.93e-10;2!UBERON:0005169;1.93e-10;2!UBERON:0002321;1.93e-10;2!UBERON:0005215;1.93e-10;2!UBERON:0002303;1.93e-10;2!UBERON:0002319;1.93e-10;2!UBERON:0005172;5.79e-09;52!UBERON:0005173;5.79e-09;52!UBERON:0004175;1.02e-07;21!UBERON:0002298;1.49e-07;6!UBERON:0005910;2.12e-07;6!UBERON:0003103;2.75e-07;61!UBERON:0002417;6.49e-07;58!UBERON:0000916;6.49e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.44e-46,10;UBERON:0000489,4.24e-41,31;UBERON:0006555,5.49e-41,16;UBERON:0004819,5.49e-41,16;UBERON:0002113,8.82e-39,26;UBERON:0003918,8.82e-39,26;UBERON:0011143,8.82e-39,26;UBERON:0005095,8.82e-39,26;UBERON:0007687,8.82e-39,26;UBERON:0004211,1.36e-36,15;UBERON:0009773,1.36e-36,15;UBERON:0001231,1.36e-36,15;UBERON:0001285,1.36e-36,15;UBERON:0007684,1.36e-36,15;UBERON:0004208,1.36e-36,15;UBERON:0006554,9.39e-26,47;UBERON:0001008,3.91e-25,48;UBERON:0001225,2.91e-24,12;UBERON:0008987,2.91e-24,12;UBERON:0001851,3.70e-19,15;UBERON:0000353,3.70e-19,15;UBERON:0005172,6.97e-17,54;UBERON:0005173,6.97e-17,54;UBERON:0003103,1.42e-16,68;UBERON:0006947,4.85e-16,3;UBERON:0004054,4.85e-16,3;UBERON:0006853,9.20e-16,3;UBERON:0007685,9.20e-16,3;UBERON:0004134,9.20e-16,3;UBERON:0002417,7.43e-15,60;UBERON:0000916,7.43e-15,60;UBERON:0001896,2.05e-14,3;UBERON:0005290,2.05e-14,3;UBERON:0010096,2.05e-14,3;UBERON:0000080,3.79e-13,9;UBERON:0002120,3.79e-13,9;UBERON:0004875,3.79e-13,9;UBERON:0005721,3.79e-13,9;UBERON:0005754,3.79e-13,9;UBERON:0007297,3.79e-13,9;UBERON:0005904,3.81e-12,4;UBERON:0004876,1.04e-10,11;UBERON:0003567,3.50e-10,2;UBERON:0003838,3.50e-10,2;UBERON:0003586,3.50e-10,2;UBERON:0005169,3.50e-10,2;UBERON:0002321,3.50e-10,2;UBERON:0005215,3.50e-10,2;UBERON:0002303,3.50e-10,2;UBERON:0002319,3.50e-10,2;UBERON:0003887,8.59e-10,12;UBERON:0005103,1.36e-09,8;UBERON:0000083,1.36e-09,8;UBERON:0009201,1.36e-09,8;UBERON:0006553,1.36e-09,8;UBERON:0003074,1.36e-09,8;UBERON:0003060,1.36e-09,8;UBERON:0005177,1.23e-08,101;UBERON:0000058,1.34e-08,19;UBERON:0003076,1.60e-07,15;UBERON:0003057,1.60e-07,15;UBERON:0009569,1.63e-07,112;UBERON:0005910,1.80e-07,6;UBERON:0002298,1.92e-07,6 | |||
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| ||
|short_description=p1@HOXD4 | |short_description=p1@HOXD4 | ||
}} | }} |
Latest revision as of 09:27, 18 September 2015
Short description: | p1@HOXD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 223bp_to_NM_014621, uc002uks.2_5end |
EntrezGene: | HOXD4 |
HGNC: | 5138 |
UniProt: | P09016 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.44e-46 | 10 |
nephron tubule epithelial cell | 1.44e-46 | 10 |
epithelial cell of nephron | 1.36e-36 | 15 |
kidney cell | 5.03e-32 | 17 |
kidney epithelial cell | 5.03e-32 | 17 |
kidney cortical cell | 2.91e-24 | 12 |
renal cortical epithelial cell | 2.91e-24 | 12 |
brush border epithelial cell | 9.20e-16 | 3 |
kidney cortex tubule cell | 9.20e-16 | 3 |
epithelial cell of proximal tubule | 9.20e-16 | 3 |
mesangial cell | 3.50e-10 | 2 |
kidney interstitial cell | 3.50e-10 | 2 |
juxtaglomerular complex cell | 3.50e-10 | 2 |
renal interstitial pericyte | 3.50e-10 | 2 |
extraglomerular mesangial cell | 3.50e-10 | 2 |
seromucus secreting cell | 4.02e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.63e-07 | 3 |
leiomyoma | 2.63e-07 | 3 |