FF:10179-103C8: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	pineal gland - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13804
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pineal gland
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005293

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13804		CAGE		DRX008706		DRR009578

Accession ID Hg19

Library id		BAM		CTSS
CNhs13804		DRZ001003		DRZ002388

Accession ID Hg38

Library id		BAM		CTSS
CNhs13804		DRZ012353		DRZ013738

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.447
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.426
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.113
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.186
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.216
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.497
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.332
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0178
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0.956
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.811
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0247
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.723
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.186
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.929
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.316
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0908
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	1.189
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.646
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.541
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.186
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.186
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.186
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	1.319
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13804

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0245
MA0003.1	MA0003.1	0.302
MA0004.1	MA0004.1	0.354
MA0006.1	MA0006.1	0.286
MA0007.1	MA0007.1	0.227
MA0009.1	MA0009.1	0.387
MA0014.1	MA0014.1	0.45
MA0017.1	MA0017.1	0.0135
MA0018.2	MA0018.2	4.76074e-7
MA0019.1	MA0019.1	0.618
MA0024.1	MA0024.1	0.393
MA0025.1	MA0025.1	0.23
MA0027.1	MA0027.1	0.791
MA0028.1	MA0028.1	0.196
MA0029.1	MA0029.1	0.906
MA0030.1	MA0030.1	0.581
MA0031.1	MA0031.1	0.827
MA0035.2	MA0035.2	0.323
MA0038.1	MA0038.1	0.113
MA0039.2	MA0039.2	0.162
MA0040.1	MA0040.1	0.981
MA0041.1	MA0041.1	0.423
MA0042.1	MA0042.1	0.505
MA0043.1	MA0043.1	0.253
MA0046.1	MA0046.1	0.199
MA0047.2	MA0047.2	0.0521
MA0048.1	MA0048.1	0.0643
MA0050.1	MA0050.1	0.00737
MA0051.1	MA0051.1	0.0337
MA0052.1	MA0052.1	0.0305
MA0055.1	MA0055.1	0.0153
MA0057.1	MA0057.1	0.664
MA0058.1	MA0058.1	0.269
MA0059.1	MA0059.1	0.023
MA0060.1	MA0060.1	0.162
MA0061.1	MA0061.1	0.00783
MA0062.2	MA0062.2	0.0131
MA0065.2	MA0065.2	0.00345
MA0066.1	MA0066.1	0.145
MA0067.1	MA0067.1	0.129
MA0068.1	MA0068.1	0.576
MA0069.1	MA0069.1	0.782
MA0070.1	MA0070.1	0.635
MA0071.1	MA0071.1	0.635
MA0072.1	MA0072.1	0.156
MA0073.1	MA0073.1	0.333
MA0074.1	MA0074.1	0.559
MA0076.1	MA0076.1	0.558
MA0077.1	MA0077.1	0.73
MA0078.1	MA0078.1	0.767
MA0079.2	MA0079.2	0.882
MA0080.2	MA0080.2	5.67053e-10
MA0081.1	MA0081.1	0.0465
MA0083.1	MA0083.1	0.139
MA0084.1	MA0084.1	0.302
MA0087.1	MA0087.1	0.824
MA0088.1	MA0088.1	0.0933
MA0090.1	MA0090.1	0.226
MA0091.1	MA0091.1	0.526
MA0092.1	MA0092.1	0.27
MA0093.1	MA0093.1	0.401
MA0099.2	MA0099.2	3.91547e-7
MA0100.1	MA0100.1	0.958
MA0101.1	MA0101.1	0.0043
MA0102.2	MA0102.2	0.141
MA0103.1	MA0103.1	0.287
MA0104.2	MA0104.2	0.34
MA0105.1	MA0105.1	0.00449
MA0106.1	MA0106.1	0.0258
MA0107.1	MA0107.1	0.00362
MA0108.2	MA0108.2	0.536
MA0111.1	MA0111.1	0.429
MA0112.2	MA0112.2	0.00538
MA0113.1	MA0113.1	0.124
MA0114.1	MA0114.1	0.0121
MA0115.1	MA0115.1	0.963
MA0116.1	MA0116.1	0.00599
MA0117.1	MA0117.1	0.824
MA0119.1	MA0119.1	0.0589
MA0122.1	MA0122.1	0.481
MA0124.1	MA0124.1	0.815
MA0125.1	MA0125.1	0.191
MA0131.1	MA0131.1	0.924
MA0135.1	MA0135.1	5.08768e-4
MA0136.1	MA0136.1	1.55569e-10
MA0137.2	MA0137.2	0.316
MA0138.2	MA0138.2	0.37
MA0139.1	MA0139.1	0.461
MA0140.1	MA0140.1	0.312
MA0141.1	MA0141.1	0.0851
MA0142.1	MA0142.1	0.786
MA0143.1	MA0143.1	0.643
MA0144.1	MA0144.1	0.0508
MA0145.1	MA0145.1	0.312
MA0146.1	MA0146.1	0.0146
MA0147.1	MA0147.1	0.201
MA0148.1	MA0148.1	0.0189
MA0149.1	MA0149.1	0.104
MA0150.1	MA0150.1	0.0398
MA0152.1	MA0152.1	0.686
MA0153.1	MA0153.1	0.42
MA0154.1	MA0154.1	0.0281
MA0155.1	MA0155.1	0.591
MA0156.1	MA0156.1	3.22759e-8
MA0157.1	MA0157.1	0.189
MA0159.1	MA0159.1	0.0592
MA0160.1	MA0160.1	0.434
MA0162.1	MA0162.1	0.0517
MA0163.1	MA0163.1	4.97684e-5
MA0164.1	MA0164.1	0.464
MA0258.1	MA0258.1	0.0923
MA0259.1	MA0259.1	0.525

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13804

Novel motif	Logo	P-value
1	1	0.0775
10	10	0.0327
100	100	0.18
101	101	0.926
102	102	0.92
103	103	0.0847
104	104	0.213
105	105	0.786
106	106	0.0197
107	107	0.0371
108	108	0.924
109	109	0.00657
11	11	0.024
110	110	0.0426
111	111	0.0194
112	112	0.969
113	113	0.565
114	114	0.344
115	115	0.696
116	116	0.39
117	117	0.00925
118	118	0.0153
119	119	0.175
12	12	0.981
120	120	0.104
121	121	0.346
122	122	0.793
123	123	0.217
124	124	0.703
125	125	0.544
126	126	0.287
127	127	0.949
128	128	0.194
129	129	0.347
13	13	0.00639
130	130	0.266
131	131	0.0417
132	132	0.581
133	133	0.0173
134	134	0.794
135	135	0.507
136	136	0.0143
137	137	0.948
138	138	0.499
139	139	0.618
14	14	0.985
140	140	0.544
141	141	0.569
142	142	0.567
143	143	0.29
144	144	0.512
145	145	0.0582
146	146	0.154
147	147	0.153
148	148	0.0936
149	149	0.204
15	15	0.0482
150	150	0.18
151	151	0.457
152	152	0.0314
153	153	0.665
154	154	0.864
155	155	0.633
156	156	0.979
157	157	0.441
158	158	0.0269
159	159	0.029
16	16	0.0939
160	160	0.0303
161	161	0.0742
162	162	0.716
163	163	0.794
164	164	0.00648
165	165	0.0329
166	166	0.966
167	167	0.356
168	168	0.222
169	169	0.0135
17	17	0.071
18	18	0.184
19	19	0.264
2	2	0.681
20	20	0.184
21	21	0.109
22	22	0.271
23	23	0.236
24	24	0.0383
25	25	0.459
26	26	1.22735e-4
27	27	0.83
28	28	0.801
29	29	0.00817
3	3	0.0406
30	30	0.677
31	31	0.918
32	32	0.0363
33	33	0.0625
34	34	0.742
35	35	0.955
36	36	0.126
37	37	0.0601
38	38	0.319
39	39	0.235
4	4	0.836
40	40	0.0304
41	41	0.251
42	42	0.294
43	43	0.121
44	44	0.114
45	45	0.765
46	46	0.0465
47	47	0.0638
48	48	0.0456
49	49	0.17
5	5	0.358
50	50	0.25
51	51	0.34
52	52	0.545
53	53	0.668
54	54	0.385
55	55	0.512
56	56	0.448
57	57	0.143
58	58	0.335
59	59	0.0747
6	6	0.553
60	60	0.112
61	61	0.0451
62	62	0.303
63	63	0.0487
64	64	0.301
65	65	0.168
66	66	0.179
67	67	0.356
68	68	0.332
69	69	0.192
7	7	0.166
70	70	0.00577
71	71	0.00428
72	72	0.518
73	73	0.0364
74	74	0.846
75	75	0.0285
76	76	0.227
77	77	0.157
78	78	0.0589
79	79	0.26
8	8	0.0137
80	80	0.871
81	81	0.24
82	82	0.867
83	83	0.229
84	84	0.335
85	85	0.305
86	86	0.466
87	87	3.04717e-4
88	88	0.959
89	89	0.367
9	9	0.793
90	90	0.0905
91	91	0.775
92	92	0.584
93	93	0.833
94	94	0.0553
95	95	0.0336
96	96	0.639
97	97	0.774
98	98	0.326
99	99	0.197

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13804

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010160 human pineal gland - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001905 (pineal body)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0002757 (regional part of epithalamus)
0010134 (secretory circumventricular organ)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005408 (circumventricular organ)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
0001899 (epithalamus)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010160 (human pineal gland - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005293
+|accession_numbers=CAGE;DRX008706;DRR009578;DRZ001003;DRZ002388;DRZ012353;DRZ013738
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001905,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0002757,UBERON:0010134,UBERON:0002530,UBERON:0010317,UBERON:0005408,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949,UBERON:0001899
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.24!1733.00!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.08!1188.72!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.83!671.77!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.58!381.42!OTX2;;chr9:77112244..77112262,+!p1@RORB!2.38!263.57!RORB;;chr11:122852529..122852549,-!p1@BSX!2.36!226.07!BSX;;chr2:182545234..182545252,-!p1@NEUROD1!2.25!176.78!NEUROD1;;chr13:72441315..72441454,-!p1@DACH1!2.21!309.64!DACH1;;chr10:35484053..35484076,+!p1@CREM!2.20!379.81!CREM;;chr5:134871645..134871660,-!p1@NEUROG1!2.16!144.64!NEUROG1;;chr12:55413721..55413728,+!p3@NEUROD4!2.14!138.21!NEUROD4;;chr12:55413694..55413703,+!p2@NEUROD4!2.12!130.71!NEUROD4;;chr12:54779511..54779577,-!p5@ZNF385A!2.11!128.57!ZNF385A;;chr3:52002194..52002250,-!p5@PCBP4!2.08!118.93!PCBP4;;chr19:3772220..3772236,-!p1@RAX2!1.94!85.18!RAX2;;chr1:40105299..40105326,-!p1@HEYL!1.92!83.03!HEYL;;chr14:57277098..57277116,-!p3@OTX2!1.91!80.89!OTX2;;chr1:157069495..157069541,-!p2@ETV3L!1.87!73.93!ETV3L;;chr1:157069619..157069633,-!p3@ETV3L!1.85!69.64!ETV3L;;chr8:53166899..53166914,-!p3@ST18!1.80!62.14!ST18;;chr1:216896752..216896778,-!p1@ESRRG!1.79!60.00!ESRRG;;chr11:122852557..122852570,-!p2@BSX!1.77!57.32!BSX;;chr12:26277817..26277863,-!p2@BHLHE41!1.76!75.00!BHLHE41;;chr12:26277956..26277980,-!p1@BHLHE41!1.72!176.25!BHLHE41;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.43!ZNF483;;chr1:165414325..165414369,-!p1@RXRG!1.69!48.21!RXRG;;chr5:124084493..124084524,-!p2@ZNF608!1.66!98.03!ZNF608;;chr2:166326200..166326216,+!p1@CSRNP3!1.66!64.82!CSRNP3;;chr1:10754477..10754517,-!p1@CASZ1!1.64!69.11!CASZ1;;chr11:31832658..31832681,-!p1@PAX6!1.63!41.25!PAX6;;chr15:57511609..57511651,+!p2@TCF12!1.62!67.50!TCF12;;chr2:223163706..223163730,-!p1@PAX3!1.60!39.11!PAX3;;chr9:77112225..77112238,+!p2@RORB!1.59!37.50!RORB;;chr8:53162037..53162058,-!p5@ST18!1.54!33.75!ST18;;chr10:35484090..35484104,+!p6@CREM!1.53!33.21!CREM;;chr9:139094988..139095012,-!p1@LHX3!1.52!32.14!LHX3;;chr21:47063625..47063658,+!p1@PCBP3!1.51!130.71!PCBP3;;chr3:114173720..114173794,-!p6@ZBTB20!1.51!31.61!ZBTB20;;chr14:57277163..57277168,-!p4@OTX2!1.51!31.61!OTX2;;chr14:57272369..57272391,-!p2@OTX2!1.51!31.07!OTX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.50!46.07!ZNF385A;;chr13:72441074..72441172,-!p2@DACH1!1.48!29.46!DACH1;;chr7:63505799..63505904,+!p1@ZNF727!1.48!28.93!ZNF727;;chr1:180199393..180199426,+!p1@LHX4!1.47!28.39!LHX4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.39!ZBED1;;chr15:76629123..76629151,+!p1@ISL2!1.45!30.00!ISL2;;chr17:7492684..7492778,-!p2@SOX15!1.44!54.64!SOX15;;chr15:61521417..61521460,-!p2@RORA!1.43!56.78!RORA;;chr17:37764128..37764258,-!p1@NEUROD2!1.41!24.64!NEUROD2;;chr1:244219775..244219893,+!p2@ZNF238!1.39!32.14!ZNF238;;chr1:8877692..8877732,-!p1@RERE!1.38!180.00!RERE;;chr8:135522475..135522486,-!p16@ZFAT!1.37!22.50!ZFAT;;chr7:100065686..100065701,-!p2@TSC22D4!1.34!20.89!TSC22D4;;chr11:31832610..31832639,-!p5@PAX6!1.34!20.89!PAX6;;chr10:64133910..64133925,+!p5@ZNF365!1.32!19.82!ZNF365;;chr1:157069555..157069569,-!p4@ETV3L!1.32!19.82!ETV3L;;chr19:54041669..54041697,+!p2@ZNF331!1.31!19.29!ZNF331;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.31!19.29!ZNF676;;chr17:53342311..53342400,+!p1@HLF!1.30!21.43!HLF;;chr21:34442439..34442455,+!p1@OLIG1!1.30!18.75!OLIG1;;chr2:157198916..157198978,-!p2@NR4A2!1.28!62.14!NR4A2;;chr12:26277929..26277955,-!p3@BHLHE41!1.27!25.18!BHLHE41;;chr19:38183208..38183225,-!p1@ZNF781!1.27!22.50!ZNF781;;chr19:38183228..38183242,-!p4@ZNF781!1.27!17.68!ZNF781;;chr20:62796052..62796067,+!p5@MYT1!1.27!17.68!MYT1;;chr8:22550982..22550999,-!p1@EGR3!1.25!47.14!EGR3;;chr9:109625401..109625458,+!p1@ZNF462!1.25!43.93!ZNF462;;chr13:72441506..72441562,-!p3@DACH1!1.25!16.61!DACH1;;chr16:67198633..67198671,+!p1@HSF4!1.25!16.61!HSF4;;chr19:38085768..38085821,+!p1@ZNF540!1.24!24.64!ZNF540;;chr7:74072135..74072171,+!p2@GTF2I!1.23!49.28!GTF2I;;chr3:128212033..128212051,-!p1@GATA2!1.23!16.07!GATA2;;chr3:128206762..128206781,-!p2@GATA2!1.22!94.82!GATA2;;chr7:149470641..149470694,-!p1@ZNF467!1.22!70.18!ZNF467;;chr17:38465441..38465481,+!p6@RARA!1.22!19.29!RARA;;chr22:38380543..38380569,-!p1@SOX10!1.22!15.54!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.21!117.85!NR1D1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.21!32.68!ZNF395;;chr1:151032142..151032195,+!p5@MLLT11!1.21!28.93!MLLT11;;chr10:64134120..64134183,+!p1@ZNF365!1.20!17.68!ZNF365;;chr12:54778471..54778528,-!p1@ZNF385A!1.20!15.00!ZNF385A;;chr20:20348740..20348757,+!p1@INSM1!1.20!15.00!INSM1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.19!14.46!PEG3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.19!14.46!SMARCE1;;chr19:22193731..22193751,-!p1@ZNF208!1.19!14.46!ZNF208;;chr10:64133934..64133954,+!p6@ZNF365!1.19!14.46!ZNF365;;chr7:73038839..73038862,-!p1@MLXIPL!1.19!14.46!MLXIPL;;chr8:40755333..40755352,-!p1@ZMAT4!1.19!14.46!ZMAT4;;chr20:62680984..62680999,-!p1@SOX18!1.18!18.75!SOX18;;chr21:34143999..34144016,-!p4@GCFC1!1.17!24.11!GCFC1;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001905;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010133
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10179-103C8
 |is_a=EFO:0002091;;FF:0010160
 |is_obsolete=
+|library_id=CNhs13804
+|library_id_phase_based=2:CNhs13804
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10179
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10179
 |name=pineal gland - adult, donor10196
 |namespace=FANTOM5
@@ Line 47: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=103
 |rna_catalog_number=
@@ Line 60: / Line 79: @@
 |rna_weight_ug=78.32925
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10179-103C8;search_select_hide=table117:FF:10179-103C8
 }}

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FF:10179-103C8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0