FF:11458-119A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005619 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008259;DRR009131;DRZ000556;DRZ001941;DRZ011906;DRZ013291 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.79!162.22!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.64!57.87!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.45!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.54!963.35!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.54!86.94!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.48!131.18!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.43!25.84!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.42!28.93!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.39!23.46!IRX2;;chr12:66218183..66218209,+!p4@HMGA2!1.38!43.54!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.02!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.37!22.33!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.33!34.27!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.27!22.33!TFAP2C;;chr2:239756671..239756732,+!p1@TWIST2!1.25!52.81!TWIST2;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.43!HOXB6;;chr2:239756739..239756755,+!p2@TWIST2!1.23!26.97!TWIST2;;chr2:102091566..102091581,-!p1@RFX8!1.19!14.47!RFX8;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.72!TBX18;;chr2:5832508..5832524,+!p1@SOX11!1.12!12.22!SOX11;;chr12:66218378..66218401,+!p6@HMGA2!1.09!17.42!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.07!12.50!BNC1;;chr12:54402745..54402788,+!p1@HOXC8!1.07!10.81!HOXC8;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.83!ZIC1;;chr18:52969844..52969895,-!p27@TCF4!1.03!9.69!TCF4;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.55!HOXD8;;chr18:52969674..52969685,-!p24@TCF4!1.00!8.99!TCF4;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.48!ETV4;;chr12:66218573..66218596,+!p7@HMGA2!0.99!13.34!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.97!8.29!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.94!35.53!TOX2;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.44!PAX3;;chr5:3595977..3595999,+!p1@IRX1!0.93!7.44!IRX1;;chr2:19558373..19558392,-!p1@OSR1!0.92!20.51!OSR1;;chr2:200322654..200322707,-!p2@SATB2!0.90!10.39!SATB2;;chr5:158526917..158526932,-!p1@EBF1!0.89!17.70!EBF1;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.87!HOXB6;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.74!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!0.89!6.74!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.74!PRRX1;;chr17:41623009..41623053,-!p4@ETV4!0.88!10.96!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.60!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.60!KDM5D;;chr12:66218469..66218477,+!p16@HMGA2!0.87!6.46!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.86!35.11!ETV1;;chr3:12329358..12329393,+!p3@PPARG!0.86!16.15!PPARG;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.59!TOX2;;chr12:54447637..54447659,+!p4@HOXC4!0.86!6.32!HOXC4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.84!6.32!GLIS1;;chr1:170632439..170632465,+!p11@PRRX1!0.84!5.90!PRRX1;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.22!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.39!DRAP1;;chr5:2751785..2751808,-!p2@IRX2!0.83!5.76!IRX2;;chr16:86544113..86544145,+!p1@FOXF1!0.82!7.16!FOXF1;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.86!DRAP1;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.32!HOXB2;;chr12:66218152..66218174,+!p10@HMGA2!0.81!5.90!HMGA2;;chr2:119605214..119605230,-!p1@EN1!0.81!5.48!EN1;;chr3:157823517..157823562,-!p1@SHOX2!0.80!5.76!SHOX2;;chr17:46671108..46671147,-!p1@HOXB5!0.80!5.34!HOXB5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.34!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.80!5.34!PRRX1;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.30!HOXB7;;chr12:66218443..66218461,+!p8@HMGA2!0.79!6.74!HMGA2;;chr12:54379029..54379057,+!p2@HOXC10!0.78!5.06!HOXC10;;chr1:170632115..170632136,+!p9@PRRX1!0.78!5.06!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.77!4.92!EMX2;;chr3:147111231..147111281,+!p3@ZIC1!0.77!4.92!ZIC1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.05!FOSL1;;chr19:42636586..42636607,-!p1@POU2F2!0.76!14.19!POU2F2;;chr17:46667594..46667619,-!p1@HOXB3!0.76!4.78!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.76!4.78!HOXB3;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.12!BRCA1;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.44!HOXB2;;chr17:46675539..46675551,-!p7@HOXB6!0.75!4.63!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.75!4.63!HOXB8;;chr12:54422217..54422239,+!p3@HOXC6!0.75!4.63!HOXC6;;chr4:299227..299272,-!p1@ZNF732!0.75!4.63!ZNF732;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.74!22.61!TAL1;;chr5:321810..321877,+!p1@AHRR!0.74!15.59!AHRR;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr17:46675586..46675600,-!p6@HOXB6!0.74!4.49!HOXB6;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.19!MSX1;;chr3:12329397..12329433,+!p2@PPARG!0.73!10.81!PPARG;;chr12:54378923..54378966,+!p1@HOXC10!0.73!4.35!HOXC10;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.22!ETV4;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.21!HMGA2;;chr19:22817119..22817145,+!p1@ZNF492!0.71!7.30!ZNF492;;chr5:3595961..3595975,+!p3@IRX1!0.71!4.07!IRX1;;chr12:96588143..96588185,+!p1@ELK3!0.70!55.90!ELK3;;chr6:31126291..31126399,+!p1@TCF19!0.70!43.40!TCF19;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.79!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.70!9.83!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.70!7.30!CREB3L1;;chr3:141121847..141121868,+!p5@ZBTB38!0.69!6.32!ZBTB38;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.92!HOXC4;;chr4:174450089..174450153,-!p2@HAND2!0.69!3.93!HAND2;;chr5:3595934..3595957,+!p2@IRX1!0.69!3.93!IRX1;;chr16:86612320..86612394,+!p1@FOXL1!0.69!3.93!FOXL1;;chr11:46299199..46299233,+!p1@CREB3L1!0.68!22.05!CREB3L1;;chr6:45390025..45390076,+!p2@RUNX2!0.68!10.11!RUNX2;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.78!TBX18;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.79!HOXA9;;chr12:54380404..54380433,+!p3@HOXC10!0.68!3.79!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.68!3.79!HOXC9;;chr12:54402790..54402805,+!p2@HOXC8!0.68!3.79!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.68!3.79!HOXC5;;chr8:49833978..49833996,-!p1@SNAI2!0.67!87.92!SNAI2;;chr1:170632959..170632987,+!p4@PRRX1!0.67!4.07!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.65!HAND2;;chr6:34204672..34204692,+!p1@HMGA1!0.65!464.61!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.65!38.06!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.28!SNAI2;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.78!PRRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.65!3.51!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.64!3.37!ZFY;;chr2:119604456..119604501,-!p2@EN1!0.64!3.37!EN1;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.37!SHOX2;;chr17:59477233..59477263,+!p1@TBX2!0.63!11.66!TBX2;;chr7:42276787..42276815,-!p1@GLI3!0.63!9.97!GLI3;;chr7:27205136..27205164,-!p1@HOXA9!0.63!3.23!HOXA9;;chr17:41622731..41622764,-!p5@ETV4!0.63!3.23!ETV4;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.23!RFX8;;chr2:102091478..102091490,-!p3@RFX8!0.63!3.23!RFX8;;chr20:32274179..32274213,-!p1@E2F1!0.61!24.02!E2F1;;chr6:85474198..85474212,-!p3@TBX18!0.61!3.09!TBX18;;chr12:54447686..54447704,+!p5@HOXC4!0.61!3.09!HOXC4;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.93!DPF1;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.37!HOXB2;;chr2:102091590..102091601,-!p5@RFX8!0.60!2.95!RFX8;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.61!MATR3;;chr16:86600426..86600441,+!p1@FOXC2!0.59!8.15!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.59!4.78!ENO1;;chr17:46655704..46655718,-!p2@HOXB4!0.59!4.63!HOXB4;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.79!TBX3;;chr14:55493763..55493824,-!p1@WDHD1!0.58!25.70!WDHD1;;chr6:45390077..45390105,+!p9@RUNX2!0.58!3.79!RUNX2;;chr3:12329320..12329338,+!p4@PPARG!0.58!3.09!PPARG;;chr12:54402729..54402743,+!p3@HOXC8!0.58!2.81!HOXC8;;chr17:46655672..46655697,-!p3@HOXB4!0.58!2.81!HOXB4;;chr5:158527139..158527161,-!p5@EBF1!0.58!2.81!EBF1;;chr8:25902876..25902936,-!p1@EBF2!0.58!2.81!EBF2;;chr8:93074872..93074884,-!p10@RUNX1T1!0.58!2.81!RUNX1T1;;chr6:34204973..34204990,+!p4@HMGA1!0.57!45.08!HMGA1;;chr21:47063625..47063658,+!p1@PCBP3!0.57!14.19!PCBP3;;chr7:19157043..19157088,-!p2@TWIST1!0.57!8.01!TWIST1;;chr2:169312600..169312606,+!p2@CERS6!0.57!4.63!CERS6;;chr12:66218003..66218018,+!p9@HMGA2!0.57!3.51!HMGA2;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.09!ZNF385D;;chr17:41623667..41623682,-!p8@ETV4!0.57!2.95!ETV4;;chr16:54320675..54320715,-!p1@IRX3!0.56!6.46!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.56!3.23!HOXB2;;chr17:46691732..46691766,-!p4@HOXB8!0.56!2.67!HOXB8;;chr3:21792631..21792665,-!p3@ZNF385D!0.56!2.67!ZNF385D;;chr20:42295745..42295765,+!p1@MYBL2!0.55!52.25!MYBL2;;chr9:4300050..4300118,-!p1@GLIS3!0.55!20.51!GLIS3;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.97!ENO1;;chr7:42276822..42276895,-!p2@GLI3!0.55!8.99!GLI3;;chr4:26322267..26322334,+!p3@RBPJ!0.55!7.16!RBPJ;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.32!SATB2;;chr2:175199675..175199688,+!p1@SP9!0.55!2.53!SP9;;chr3:147127177..147127194,+!p2@ZIC1!0.55!2.53!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.55!2.53!EBF1;;chr6:85473227..85473243,-!p5@TBX18!0.55!2.53!TBX18;;chr1:170633058..170633084,+!p5@PRRX1!0.55!2.53!PRRX1;;chr20:42295713..42295738,+!p2@MYBL2!0.54!17.98!MYBL2;;chr4:206390..206444,+!p1@ZNF876P!0.54!5.06!ZNF876P;;chr19:23299814..23299844,+!p1@ZNF730!0.54!3.23!ZNF730;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.26!AEBP1;;chr12:77459306..77459365,-!p1@E2F7!0.53!38.34!E2F7;;chr4:1873100..1873152,+!p1@WHSC1!0.53!23.31!WHSC1;;chr17:41622925..41622976,-!p3@ETV4!0.53!3.93!ETV4;;chr4:109089095..109089144,-!p6@LEF1!0.53!2.39!LEF1;;chr1:119530493..119530572,-!p1@TBX15!0.53!2.39!TBX15;;chr1:170632647..170632659,+!p17@PRRX1!0.53!2.39!PRRX1;;chr5:176738887..176738934,-!p1@MXD3!0.52!19.52!MXD3;;chr10:114710244..114710257,+!p3@TCF7L2!0.52!7.58!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.92!AEBP1;;chr2:185463247..185463263,+!p1@ZNF804A!0.52!4.63!ZNF804A;;chr8:128748308..128748324,+!p2@MYC!0.51!82.16!MYC;;chr12:2986275..2986363,-!p1@FOXM1!0.51!29.35!FOXM1;;chr1:247171347..247171366,-!p2@ZNF695!0.51!4.78!ZNF695;;chr15:57210759..57210775,+!p7@TCF12!0.51!3.65!TCF12;;chr3:147111198..147111225,+!p4@ZIC1!0.51!2.25!ZIC1;;chr4:111558135..111558198,-!p2@PITX2!0.51!2.25!PITX2;;chr10:119302232..119302265,+!p1@EMX2!0.51!2.25!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.51!2.25!HOXC5;;ch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| |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.79!162.22!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.64!57.87!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.45!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.54!963.35!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.54!86.94!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.48!131.18!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.43!25.84!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.42!28.93!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.39!23.46!IRX2;;chr12:66218183..66218209,+!p4@HMGA2!1.38!43.54!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.02!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.37!22.33!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.33!34.27!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.27!22.33!TFAP2C;;chr2:239756671..239756732,+!p1@TWIST2!1.25!52.81!TWIST2;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.43!HOXB6;;chr2:239756739..239756755,+!p2@TWIST2!1.23!26.97!TWIST2;;chr2:102091566..102091581,-!p1@RFX8!1.19!14.47!RFX8;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.72!TBX18;;chr2:5832508..5832524,+!p1@SOX11!1.12!12.22!SOX11;;chr12:66218378..66218401,+!p6@HMGA2!1.09!17.42!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.07!12.50!BNC1;;chr12:54402745..54402788,+!p1@HOXC8!1.07!10.81!HOXC8;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.83!ZIC1;;chr18:52969844..52969895,-!p27@TCF4!1.03!9.69!TCF4;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.55!HOXD8;;chr18:52969674..52969685,-!p24@TCF4!1.00!8.99!TCF4;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.48!ETV4;;chr12:66218573..66218596,+!p7@HMGA2!0.99!13.34!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.97!8.29!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.94!35.53!TOX2;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.44!PAX3;;chr5:3595977..3595999,+!p1@IRX1!0.93!7.44!IRX1;;chr2:19558373..19558392,-!p1@OSR1!0.92!20.51!OSR1;;chr2:200322654..200322707,-!p2@SATB2!0.90!10.39!SATB2;;chr5:158526917..158526932,-!p1@EBF1!0.89!17.70!EBF1;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.87!HOXB6;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.74!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!0.89!6.74!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.74!PRRX1;;chr17:41623009..41623053,-!p4@ETV4!0.88!10.96!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.60!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.60!KDM5D;;chr12:66218469..66218477,+!p16@HMGA2!0.87!6.46!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.86!35.11!ETV1;;chr3:12329358..12329393,+!p3@PPARG!0.86!16.15!PPARG;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.59!TOX2;;chr12:54447637..54447659,+!p4@HOXC4!0.86!6.32!HOXC4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.84!6.32!GLIS1;;chr1:170632439..170632465,+!p11@PRRX1!0.84!5.90!PRRX1;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.22!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.39!DRAP1;;chr5:2751785..2751808,-!p2@IRX2!0.83!5.76!IRX2;;chr16:86544113..86544145,+!p1@FOXF1!0.82!7.16!FOXF1;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.86!DRAP1;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.32!HOXB2;;chr12:66218152..66218174,+!p10@HMGA2!0.81!5.90!HMGA2;;chr2:119605214..119605230,-!p1@EN1!0.81!5.48!EN1;;chr3:157823517..157823562,-!p1@SHOX2!0.80!5.76!SHOX2;;chr17:46671108..46671147,-!p1@HOXB5!0.80!5.34!HOXB5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.34!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.80!5.34!PRRX1;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.30!HOXB7;;chr12:66218443..66218461,+!p8@HMGA2!0.79!6.74!HMGA2;;chr12:54379029..54379057,+!p2@HOXC10!0.78!5.06!HOXC10;;chr1:170632115..170632136,+!p9@PRRX1!0.78!5.06!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.77!4.92!EMX2;;chr3:147111231..147111281,+!p3@ZIC1!0.77!4.92!ZIC1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.05!FOSL1;;chr19:42636586..42636607,-!p1@POU2F2!0.76!14.19!POU2F2;;chr17:46667594..46667619,-!p1@HOXB3!0.76!4.78!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.76!4.78!HOXB3;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.12!BRCA1;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.44!HOXB2;;chr17:46675539..46675551,-!p7@HOXB6!0.75!4.63!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.75!4.63!HOXB8;;chr12:54422217..54422239,+!p3@HOXC6!0.75!4.63!HOXC6;;chr4:299227..299272,-!p1@ZNF732!0.75!4.63!ZNF732;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.74!22.61!TAL1;;chr5:321810..321877,+!p1@AHRR!0.74!15.59!AHRR;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr17:46675586..46675600,-!p6@HOXB6!0.74!4.49!HOXB6;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.19!MSX1;;chr3:12329397..12329433,+!p2@PPARG!0.73!10.81!PPARG;;chr12:54378923..54378966,+!p1@HOXC10!0.73!4.35!HOXC10;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.22!ETV4;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.21!HMGA2;;chr19:22817119..22817145,+!p1@ZNF492!0.71!7.30!ZNF492;;chr5:3595961..3595975,+!p3@IRX1!0.71!4.07!IRX1;;chr12:96588143..96588185,+!p1@ELK3!0.70!55.90!ELK3;;chr6:31126291..31126399,+!p1@TCF19!0.70!43.40!TCF19;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.79!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.70!9.83!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.70!7.30!CREB3L1;;chr3:141121847..141121868,+!p5@ZBTB38!0.69!6.32!ZBTB38;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.92!HOXC4;;chr4:174450089..174450153,-!p2@HAND2!0.69!3.93!HAND2;;chr5:3595934..3595957,+!p2@IRX1!0.69!3.93!IRX1;;chr16:86612320..86612394,+!p1@FOXL1!0.69!3.93!FOXL1;;chr11:46299199..46299233,+!p1@CREB3L1!0.68!22.05!CREB3L1;;chr6:45390025..45390076,+!p2@RUNX2!0.68!10.11!RUNX2;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.78!TBX18;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.79!HOXA9;;chr12:54380404..54380433,+!p3@HOXC10!0.68!3.79!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.68!3.79!HOXC9;;chr12:54402790..54402805,+!p2@HOXC8!0.68!3.79!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.68!3.79!HOXC5;;chr8:49833978..49833996,-!p1@SNAI2!0.67!87.92!SNAI2;;chr1:170632959..170632987,+!p4@PRRX1!0.67!4.07!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.65!HAND2;;chr6:34204672..34204692,+!p1@HMGA1!0.65!464.61!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.65!38.06!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.28!SNAI2;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.78!PRRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.65!3.51!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.64!3.37!ZFY;;chr2:119604456..119604501,-!p2@EN1!0.64!3.37!EN1;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.37!SHOX2;;chr17:59477233..59477263,+!p1@TBX2!0.63!11.66!TBX2;;chr7:42276787..42276815,-!p1@GLI3!0.63!9.97!GLI3;;chr7:27205136..27205164,-!p1@HOXA9!0.63!3.23!HOXA9;;chr17:41622731..41622764,-!p5@ETV4!0.63!3.23!ETV4;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.23!RFX8;;chr2:102091478..102091490,-!p3@RFX8!0.63!3.23!RFX8;;chr20:32274179..32274213,-!p1@E2F1!0.61!24.02!E2F1;;chr6:85474198..85474212,-!p3@TBX18!0.61!3.09!TBX18;;chr12:54447686..54447704,+!p5@HOXC4!0.61!3.09!HOXC4;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.93!DPF1;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.37!HOXB2;;chr2:102091590..102091601,-!p5@RFX8!0.60!2.95!RFX8;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.61!MATR3;;chr16:86600426..86600441,+!p1@FOXC2!0.59!8.15!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.59!4.78!ENO1;;chr17:46655704..46655718,-!p2@HOXB4!0.59!4.63!HOXB4;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.79!TBX3;;chr14:55493763..55493824,-!p1@WDHD1!0.58!25.70!WDHD1;;chr6:45390077..45390105,+!p9@RUNX2!0.58!3.79!RUNX2;;chr3:12329320..12329338,+!p4@PPARG!0.58!3.09!PPARG;;chr12:54402729..54402743,+!p3@HOXC8!0.58!2.81!HOXC8;;chr17:46655672..46655697,-!p3@HOXB4!0.58!2.81!HOXB4;;chr5:158527139..158527161,-!p5@EBF1!0.58!2.81!EBF1;;chr8:25902876..25902936,-!p1@EBF2!0.58!2.81!EBF2;;chr8:93074872..93074884,-!p10@RUNX1T1!0.58!2.81!RUNX1T1;;chr6:34204973..34204990,+!p4@HMGA1!0.57!45.08!HMGA1;;chr21:47063625..47063658,+!p1@PCBP3!0.57!14.19!PCBP3;;chr7:19157043..19157088,-!p2@TWIST1!0.57!8.01!TWIST1;;chr2:169312600..169312606,+!p2@CERS6!0.57!4.63!CERS6;;chr12:66218003..66218018,+!p9@HMGA2!0.57!3.51!HMGA2;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.09!ZNF385D;;chr17:41623667..41623682,-!p8@ETV4!0.57!2.95!ETV4;;chr16:54320675..54320715,-!p1@IRX3!0.56!6.46!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.56!3.23!HOXB2;;chr17:46691732..46691766,-!p4@HOXB8!0.56!2.67!HOXB8;;chr3:21792631..21792665,-!p3@ZNF385D!0.56!2.67!ZNF385D;;chr20:42295745..42295765,+!p1@MYBL2!0.55!52.25!MYBL2;;chr9:4300050..4300118,-!p1@GLIS3!0.55!20.51!GLIS3;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.97!ENO1;;chr7:42276822..42276895,-!p2@GLI3!0.55!8.99!GLI3;;chr4:26322267..26322334,+!p3@RBPJ!0.55!7.16!RBPJ;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.32!SATB2;;chr2:175199675..175199688,+!p1@SP9!0.55!2.53!SP9;;chr3:147127177..147127194,+!p2@ZIC1!0.55!2.53!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.55!2.53!EBF1;;chr6:85473227..85473243,-!p5@TBX18!0.55!2.53!TBX18;;chr1:170633058..170633084,+!p5@PRRX1!0.55!2.53!PRRX1;;chr20:42295713..42295738,+!p2@MYBL2!0.54!17.98!MYBL2;;chr4:206390..206444,+!p1@ZNF876P!0.54!5.06!ZNF876P;;chr19:23299814..23299844,+!p1@ZNF730!0.54!3.23!ZNF730;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.26!AEBP1;;chr12:77459306..77459365,-!p1@E2F7!0.53!38.34!E2F7;;chr4:1873100..1873152,+!p1@WHSC1!0.53!23.31!WHSC1;;chr17:41622925..41622976,-!p3@ETV4!0.53!3.93!ETV4;;chr4:109089095..109089144,-!p6@LEF1!0.53!2.39!LEF1;;chr1:119530493..119530572,-!p1@TBX15!0.53!2.39!TBX15;;chr1:170632647..170632659,+!p17@PRRX1!0.53!2.39!PRRX1;;chr5:176738887..176738934,-!p1@MXD3!0.52!19.52!MXD3;;chr10:114710244..114710257,+!p3@TCF7L2!0.52!7.58!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.92!AEBP1;;chr2:185463247..185463263,+!p1@ZNF804A!0.52!4.63!ZNF804A;;chr8:128748308..128748324,+!p2@MYC!0.51!82.16!MYC;;chr12:2986275..2986363,-!p1@FOXM1!0.51!29.35!FOXM1;;chr1:247171347..247171366,-!p2@ZNF695!0.51!4.78!ZNF695;;chr15:57210759..57210775,+!p7@TCF12!0.51!3.65!TCF12;;chr3:147111198..147111225,+!p4@ZIC1!0.51!2.25!ZIC1;;chr4:111558135..111558198,-!p2@PITX2!0.51!2.25!PITX2;;chr10:119302232..119302265,+!p1@EMX2!0.51!2.25!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.51!2.25!HOXC5;;ch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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11458-119A9 | |id=FF:11458-119A9 | ||
|is_a=EFO:0002091;;FF:0000062 | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12059 | |||
|library_id_phase_based=2:CNhs12059 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11458 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11458 | |||
|name=Fibroblast - Dermal, donor6 | |name=Fibroblast - Dermal, donor6 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12059,LSID838,release011,COMPLETED | |profile_hcage=CNhs12059,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC2305 | |rna_catalog_number=SC2305 | ||
| Line 59: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 101: | ||
|top_motifs=TFDP1:1.85119842042;NKX3-1:1.68580618085;PAX8:1.49827492548;POU1F1:1.40405748577;E2F1..5:1.39729099531;GFI1:1.33078992701;NFY{A,B,C}:1.13793638375;TOPORS:1.10305413785;NKX2-2,8:1.09100315953;PDX1:1.01365362616;ALX4:0.973164212003;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.955474767123;EN1,2:0.914915320169;NR3C1:0.890573970933;MYB:0.88632299984;HOXA9_MEIS1:0.88234759705;ZNF143:0.847472444356;ZNF238:0.791805027672;NRF1:0.736511081121;GZF1:0.658287751904;NANOG{mouse}:0.654566602939;PAX4:0.611493379521;SOX17:0.606945677553;GFI1B:0.6047734169;YY1:0.598908850088;ELK1,4_GABP{A,B1}:0.595829977871;ZIC1..3:0.595047573482;POU2F1..3:0.563138243953;HES1:0.559660683767;POU3F1..4:0.515088041857;PRRX1,2:0.499654536241;PBX1:0.492083627222;PITX1..3:0.480091653842;HOX{A5,B5}:0.475774665316;UFEwm:0.446830862506;FOXP1:0.444978959914;NKX2-3_NKX2-5:0.426156985841;NFIX:0.409727047765;RXR{A,B,G}:0.399111403984;HBP1_HMGB_SSRP1_UBTF:0.387071817708;CDC5L:0.382682279228;PAX3,7:0.381571233059;BREu{core}:0.372517542072;TEAD1:0.360595204;NKX6-1,2:0.345392429889;FOXD3:0.343008125968;KLF4:0.339809680697;GCM1,2:0.339568798089;BACH2:0.339348458879;MZF1:0.329916140165;CRX:0.317033467501;T:0.311883983963;SPZ1:0.292338621315;LEF1_TCF7_TCF7L1,2:0.287058926326;AHR_ARNT_ARNT2:0.286509916213;AIRE:0.260188901806;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.256023403464;ONECUT1,2:0.253993198169;XCPE1{core}:0.251796896229;TEF:0.25177893935;TFAP2{A,C}:0.244408640165;FOS_FOS{B,L1}_JUN{B,D}:0.232925365775;PAX5:0.219897039374;EVI1:0.208430731177;XBP1:0.196666906085;MYBL2:0.17695718018;PRDM1:0.168329026034;AR:0.14908266644;NR1H4:0.147234146863;ATF6:0.146966252148;PAX1,9:0.140706438501;CREB1:0.125646029652;NKX2-1,4:0.119893148935;TBX4,5:0.116217254544;TAL1_TCF{3,4,12}:0.101603098793;ZBTB16:0.0776652710525;SRF:0.069386525003;HOX{A4,D4}:0.0546922521836;TFAP4:0.0523396543469;HSF1,2:0.0441713263257;STAT5{A,B}:0.0436822198071;GATA4:0.0420362387204;NFE2L2:0.0269526739497;TP53:0.0156254779891;LHX3,4:0.0125519087514;HIC1:0.0116829047386;FOSL2:-0.00874351867525;ELF1,2,4:-0.016993955662;SOX5:-0.0229688356421;SOX{8,9,10}:-0.0248189920543;FOXM1:-0.0305919151226;HNF1A:-0.0481404312435;NFATC1..3:-0.0531014957243;NANOG:-0.0539696065486;GTF2I:-0.0568614848234;TLX1..3_NFIC{dimer}:-0.0599450499672;ALX1:-0.0615436052848;NKX3-2:-0.0797810193367;TGIF1:-0.109887874106;TFAP2B:-0.112077769842;HLF:-0.112641224927;NR5A1,2:-0.121122595053;HNF4A_NR2F1,2:-0.129289715086;IKZF1:-0.138253119738;CEBPA,B_DDIT3:-0.145748714321;ESR1:-0.15458561831;HIF1A:-0.160095971034;VSX1,2:-0.175478297005;bHLH_family:-0.180096707926;HOX{A6,A7,B6,B7}:-0.206654136204;FOXL1:-0.206915287056;ZFP161:-0.212675610398;MTF1:-0.214151807997;FOX{I1,J2}:-0.219681628569;RFX1:-0.22188007399;ZNF384:-0.230049903231;NFE2:-0.230166330071;RUNX1..3:-0.236888499484;ZBTB6:-0.250007328164;STAT1,3:-0.257779140816;DMAP1_NCOR{1,2}_SMARC:-0.259533401282;GATA6:-0.270167098612;POU6F1:-0.285009684539;IKZF2:-0.288101877566;NFE2L1:-0.289545386138;GTF2A1,2:-0.291738321703;SOX2:-0.294018313368;ESRRA:-0.298114176995;OCT4_SOX2{dimer}:-0.303084208188;MEF2{A,B,C,D}:-0.311890585694;DBP:-0.313613972495;TBP:-0.314476976457;EGR1..3:-0.325311241232;MTE{core}:-0.327276761853;REST:-0.333822832371;NFKB1_REL_RELA:-0.337904146821;SP1:-0.338568307572;ATF4:-0.346252884996;PAX2:-0.348637967051;SPI1:-0.34938699292;PATZ1:-0.35063820187;CDX1,2,4:-0.353806703378;HAND1,2:-0.35593490577;ADNP_IRX_SIX_ZHX:-0.356955218944;ARID5B:-0.358024978114;ATF5_CREB3:-0.36873012717;RFX2..5_RFXANK_RFXAP:-0.369699900777;MED-1{core}:-0.374779463545;NHLH1,2:-0.376878653536;FOXQ1:-0.387998015737;POU5F1:-0.402537983297;FOXA2:-0.421959909552;HMGA1,2:-0.424589995017;STAT2,4,6:-0.444551610865;CUX2:-0.475788976462;NR6A1:-0.508135039962;SPIB:-0.516937989325;MAZ:-0.527578677232;BPTF:-0.554312612391;JUN:-0.56041203314;TFCP2:-0.570003628639;PPARG:-0.581227159168;RXRA_VDR{dimer}:-0.589138514084;ETS1,2:-0.601925180214;ZNF148:-0.612225472895;ZNF423:-0.625030017863;EP300:-0.636669690558;RBPJ:-0.649002977578;RREB1:-0.664590563314;MYFfamily:-0.664816463977;ATF2:-0.668352796524;FOXO1,3,4:-0.676460518409;GLI1..3:-0.677371292648;FOXN1:-0.707717376253;SMAD1..7,9:-0.708458006884;FOXP3:-0.711543051443;PAX6:-0.713717544094;EBF1:-0.751562178714;MAFB:-0.751983250077;NFIL3:-0.761042611558;SNAI1..3:-0.770849438154;FOX{F1,F2,J1}:-0.772503738979;IRF1,2:-0.817506239682;HMX1:-0.860408985643;IRF7:-0.872004733985;SREBF1,2:-0.984949202263;LMO2:-0.999940612369;MYOD1:-1.02069896287;ZEB1:-1.02391647086;TLX2:-1.02852399625;RORA:-1.04802800544;FOX{D1,D2}:-1.17415576506 | |top_motifs=TFDP1:1.85119842042;NKX3-1:1.68580618085;PAX8:1.49827492548;POU1F1:1.40405748577;E2F1..5:1.39729099531;GFI1:1.33078992701;NFY{A,B,C}:1.13793638375;TOPORS:1.10305413785;NKX2-2,8:1.09100315953;PDX1:1.01365362616;ALX4:0.973164212003;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.955474767123;EN1,2:0.914915320169;NR3C1:0.890573970933;MYB:0.88632299984;HOXA9_MEIS1:0.88234759705;ZNF143:0.847472444356;ZNF238:0.791805027672;NRF1:0.736511081121;GZF1:0.658287751904;NANOG{mouse}:0.654566602939;PAX4:0.611493379521;SOX17:0.606945677553;GFI1B:0.6047734169;YY1:0.598908850088;ELK1,4_GABP{A,B1}:0.595829977871;ZIC1..3:0.595047573482;POU2F1..3:0.563138243953;HES1:0.559660683767;POU3F1..4:0.515088041857;PRRX1,2:0.499654536241;PBX1:0.492083627222;PITX1..3:0.480091653842;HOX{A5,B5}:0.475774665316;UFEwm:0.446830862506;FOXP1:0.444978959914;NKX2-3_NKX2-5:0.426156985841;NFIX:0.409727047765;RXR{A,B,G}:0.399111403984;HBP1_HMGB_SSRP1_UBTF:0.387071817708;CDC5L:0.382682279228;PAX3,7:0.381571233059;BREu{core}:0.372517542072;TEAD1:0.360595204;NKX6-1,2:0.345392429889;FOXD3:0.343008125968;KLF4:0.339809680697;GCM1,2:0.339568798089;BACH2:0.339348458879;MZF1:0.329916140165;CRX:0.317033467501;T:0.311883983963;SPZ1:0.292338621315;LEF1_TCF7_TCF7L1,2:0.287058926326;AHR_ARNT_ARNT2:0.286509916213;AIRE:0.260188901806;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.256023403464;ONECUT1,2:0.253993198169;XCPE1{core}:0.251796896229;TEF:0.25177893935;TFAP2{A,C}:0.244408640165;FOS_FOS{B,L1}_JUN{B,D}:0.232925365775;PAX5:0.219897039374;EVI1:0.208430731177;XBP1:0.196666906085;MYBL2:0.17695718018;PRDM1:0.168329026034;AR:0.14908266644;NR1H4:0.147234146863;ATF6:0.146966252148;PAX1,9:0.140706438501;CREB1:0.125646029652;NKX2-1,4:0.119893148935;TBX4,5:0.116217254544;TAL1_TCF{3,4,12}:0.101603098793;ZBTB16:0.0776652710525;SRF:0.069386525003;HOX{A4,D4}:0.0546922521836;TFAP4:0.0523396543469;HSF1,2:0.0441713263257;STAT5{A,B}:0.0436822198071;GATA4:0.0420362387204;NFE2L2:0.0269526739497;TP53:0.0156254779891;LHX3,4:0.0125519087514;HIC1:0.0116829047386;FOSL2:-0.00874351867525;ELF1,2,4:-0.016993955662;SOX5:-0.0229688356421;SOX{8,9,10}:-0.0248189920543;FOXM1:-0.0305919151226;HNF1A:-0.0481404312435;NFATC1..3:-0.0531014957243;NANOG:-0.0539696065486;GTF2I:-0.0568614848234;TLX1..3_NFIC{dimer}:-0.0599450499672;ALX1:-0.0615436052848;NKX3-2:-0.0797810193367;TGIF1:-0.109887874106;TFAP2B:-0.112077769842;HLF:-0.112641224927;NR5A1,2:-0.121122595053;HNF4A_NR2F1,2:-0.129289715086;IKZF1:-0.138253119738;CEBPA,B_DDIT3:-0.145748714321;ESR1:-0.15458561831;HIF1A:-0.160095971034;VSX1,2:-0.175478297005;bHLH_family:-0.180096707926;HOX{A6,A7,B6,B7}:-0.206654136204;FOXL1:-0.206915287056;ZFP161:-0.212675610398;MTF1:-0.214151807997;FOX{I1,J2}:-0.219681628569;RFX1:-0.22188007399;ZNF384:-0.230049903231;NFE2:-0.230166330071;RUNX1..3:-0.236888499484;ZBTB6:-0.250007328164;STAT1,3:-0.257779140816;DMAP1_NCOR{1,2}_SMARC:-0.259533401282;GATA6:-0.270167098612;POU6F1:-0.285009684539;IKZF2:-0.288101877566;NFE2L1:-0.289545386138;GTF2A1,2:-0.291738321703;SOX2:-0.294018313368;ESRRA:-0.298114176995;OCT4_SOX2{dimer}:-0.303084208188;MEF2{A,B,C,D}:-0.311890585694;DBP:-0.313613972495;TBP:-0.314476976457;EGR1..3:-0.325311241232;MTE{core}:-0.327276761853;REST:-0.333822832371;NFKB1_REL_RELA:-0.337904146821;SP1:-0.338568307572;ATF4:-0.346252884996;PAX2:-0.348637967051;SPI1:-0.34938699292;PATZ1:-0.35063820187;CDX1,2,4:-0.353806703378;HAND1,2:-0.35593490577;ADNP_IRX_SIX_ZHX:-0.356955218944;ARID5B:-0.358024978114;ATF5_CREB3:-0.36873012717;RFX2..5_RFXANK_RFXAP:-0.369699900777;MED-1{core}:-0.374779463545;NHLH1,2:-0.376878653536;FOXQ1:-0.387998015737;POU5F1:-0.402537983297;FOXA2:-0.421959909552;HMGA1,2:-0.424589995017;STAT2,4,6:-0.444551610865;CUX2:-0.475788976462;NR6A1:-0.508135039962;SPIB:-0.516937989325;MAZ:-0.527578677232;BPTF:-0.554312612391;JUN:-0.56041203314;TFCP2:-0.570003628639;PPARG:-0.581227159168;RXRA_VDR{dimer}:-0.589138514084;ETS1,2:-0.601925180214;ZNF148:-0.612225472895;ZNF423:-0.625030017863;EP300:-0.636669690558;RBPJ:-0.649002977578;RREB1:-0.664590563314;MYFfamily:-0.664816463977;ATF2:-0.668352796524;FOXO1,3,4:-0.676460518409;GLI1..3:-0.677371292648;FOXN1:-0.707717376253;SMAD1..7,9:-0.708458006884;FOXP3:-0.711543051443;PAX6:-0.713717544094;EBF1:-0.751562178714;MAFB:-0.751983250077;NFIL3:-0.761042611558;SNAI1..3:-0.770849438154;FOX{F1,F2,J1}:-0.772503738979;IRF1,2:-0.817506239682;HMX1:-0.860408985643;IRF7:-0.872004733985;SREBF1,2:-0.984949202263;LMO2:-0.999940612369;MYOD1:-1.02069896287;ZEB1:-1.02391647086;TLX2:-1.02852399625;RORA:-1.04802800544;FOX{D1,D2}:-1.17415576506 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11458-119A9;search_select_hide=table117:FF:11458-119A9 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Fibroblast - Dermal, donor6 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12059 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12059
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12059
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.706 |
| 10 | 10 | 0.204 |
| 100 | 100 | 0.601 |
| 101 | 101 | 0.381 |
| 102 | 102 | 0.346 |
| 103 | 103 | 0.0767 |
| 104 | 104 | 0.987 |
| 105 | 105 | 0.708 |
| 106 | 106 | 5.97005e-4 |
| 107 | 107 | 0.171 |
| 108 | 108 | 0.216 |
| 109 | 109 | 0.908 |
| 11 | 11 | 0.784 |
| 110 | 110 | 0.484 |
| 111 | 111 | 0.521 |
| 112 | 112 | 0.0534 |
| 113 | 113 | 0.0279 |
| 114 | 114 | 0.25 |
| 115 | 115 | 0.776 |
| 116 | 116 | 0.432 |
| 117 | 117 | 0.674 |
| 118 | 118 | 0.896 |
| 119 | 119 | 0.126 |
| 12 | 12 | 0.483 |
| 120 | 120 | 0.241 |
| 121 | 121 | 0.994 |
| 122 | 122 | 0.11 |
| 123 | 123 | 0.784 |
| 124 | 124 | 0.392 |
| 125 | 125 | 0.569 |
| 126 | 126 | 0.851 |
| 127 | 127 | 0.619 |
| 128 | 128 | 0.0171 |
| 129 | 129 | 0.144 |
| 13 | 13 | 0.684 |
| 130 | 130 | 0.0186 |
| 131 | 131 | 0.766 |
| 132 | 132 | 0.934 |
| 133 | 133 | 0.74 |
| 134 | 134 | 0.582 |
| 135 | 135 | 0.0106 |
| 136 | 136 | 0.5 |
| 137 | 137 | 0.179 |
| 138 | 138 | 0.251 |
| 139 | 139 | 9.22491e-6 |
| 14 | 14 | 0.179 |
| 140 | 140 | 0.839 |
| 141 | 141 | 0.701 |
| 142 | 142 | 0.536 |
| 143 | 143 | 0.335 |
| 144 | 144 | 0.683 |
| 145 | 145 | 0.397 |
| 146 | 146 | 0.717 |
| 147 | 147 | 0.539 |
| 148 | 148 | 0.338 |
| 149 | 149 | 0.208 |
| 15 | 15 | 0.283 |
| 150 | 150 | 0.982 |
| 151 | 151 | 0.418 |
| 152 | 152 | 0.0618 |
| 153 | 153 | 0.261 |
| 154 | 154 | 0.427 |
| 155 | 155 | 0.0826 |
| 156 | 156 | 0.684 |
| 157 | 157 | 0.183 |
| 158 | 158 | 0.0292 |
| 159 | 159 | 0.0295 |
| 16 | 16 | 0.626 |
| 160 | 160 | 0.523 |
| 161 | 161 | 0.458 |
| 162 | 162 | 0.815 |
| 163 | 163 | 0.904 |
| 164 | 164 | 0.76 |
| 165 | 165 | 0.255 |
| 166 | 166 | 0.87 |
| 167 | 167 | 0.576 |
| 168 | 168 | 0.445 |
| 169 | 169 | 0.104 |
| 17 | 17 | 0.399 |
| 18 | 18 | 0.817 |
| 19 | 19 | 0.515 |
| 2 | 2 | 0.559 |
| 20 | 20 | 0.21 |
| 21 | 21 | 0.0442 |
| 22 | 22 | 0.241 |
| 23 | 23 | 0.0351 |
| 24 | 24 | 0.439 |
| 25 | 25 | 0.988 |
| 26 | 26 | 0.327 |
| 27 | 27 | 0.471 |
| 28 | 28 | 0.554 |
| 29 | 29 | 0.983 |
| 3 | 3 | 0.691 |
| 30 | 30 | 0.383 |
| 31 | 31 | 0.489 |
| 32 | 32 | 0.605 |
| 33 | 33 | 0.426 |
| 34 | 34 | 0.263 |
| 35 | 35 | 0.453 |
| 36 | 36 | 0.874 |
| 37 | 37 | 0.448 |
| 38 | 38 | 0.41 |
| 39 | 39 | 0.933 |
| 4 | 4 | 0.138 |
| 40 | 40 | 0.539 |
| 41 | 41 | 0.135 |
| 42 | 42 | 0.979 |
| 43 | 43 | 0.222 |
| 44 | 44 | 0.766 |
| 45 | 45 | 0.0648 |
| 46 | 46 | 0.498 |
| 47 | 47 | 0.833 |
| 48 | 48 | 0.573 |
| 49 | 49 | 0.3 |
| 5 | 5 | 0.162 |
| 50 | 50 | 0.614 |
| 51 | 51 | 0.661 |
| 52 | 52 | 0.0932 |
| 53 | 53 | 0.547 |
| 54 | 54 | 0.499 |
| 55 | 55 | 0.708 |
| 56 | 56 | 0.753 |
| 57 | 57 | 0.54 |
| 58 | 58 | 0.126 |
| 59 | 59 | 0.226 |
| 6 | 6 | 0.748 |
| 60 | 60 | 0.0177 |
| 61 | 61 | 0.963 |
| 62 | 62 | 0.177 |
| 63 | 63 | 0.862 |
| 64 | 64 | 0.932 |
| 65 | 65 | 0.158 |
| 66 | 66 | 0.057 |
| 67 | 67 | 0.788 |
| 68 | 68 | 0.994 |
| 69 | 69 | 0.743 |
| 7 | 7 | 0.495 |
| 70 | 70 | 0.00218 |
| 71 | 71 | 0.96 |
| 72 | 72 | 0.179 |
| 73 | 73 | 0.468 |
| 74 | 74 | 0.143 |
| 75 | 75 | 0.597 |
| 76 | 76 | 0.703 |
| 77 | 77 | 0.544 |
| 78 | 78 | 0.834 |
| 79 | 79 | 0.597 |
| 8 | 8 | 0.965 |
| 80 | 80 | 0.0292 |
| 81 | 81 | 0.357 |
| 82 | 82 | 0.0126 |
| 83 | 83 | 0.385 |
| 84 | 84 | 0.778 |
| 85 | 85 | 0.00614 |
| 86 | 86 | 0.426 |
| 87 | 87 | 0.176 |
| 88 | 88 | 0.379 |
| 89 | 89 | 0.1 |
| 9 | 9 | 0.531 |
| 90 | 90 | 0.62 |
| 91 | 91 | 0.545 |
| 92 | 92 | 0.176 |
| 93 | 93 | 0.826 |
| 94 | 94 | 0.863 |
| 95 | 95 | 0.249 |
| 96 | 96 | 0.369 |
| 97 | 97 | 0.752 |
| 98 | 98 | 0.448 |
| 99 | 99 | 0.0789 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12059
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
