FF:11346-117G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005260 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005260 | ||
|accession_numbers=CAGE;DRX008255;DRR009127;DRZ000552;DRZ001937;DRZ011902;DRZ013287 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037214;DRR041580;DRZ007222 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.88!2122.16!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.53!103.26!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.34!TWIST2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.10!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!31.95!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.38!62.18!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.67!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.36!28.52!SOX18;;chr8:25902876..25902936,-!p1@EBF2!1.32!19.97!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.26!47.35!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!1.25!29.09!DRAP1;;chr21:39870339..39870443,-!p1@ERG!1.21!15.40!ERG;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.69!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.15!14.83!TCF4;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.26!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.55!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.12!20.54!TCF12;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.98!RFX8;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.93!FOSL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.69!TFAP2C;;chr17:59477233..59477263,+!p1@TBX2!1.06!33.09!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.05!46.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.95!HMGA2;;chr17:6926362..6926377,+!p1@BCL6B!1.05!10.27!BCL6B;;chr11:65667846..65667868,-!p1@FOSL1!1.04!266.41!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.64!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.41!ZBTB38;;chr6:34204973..34204990,+!p4@HMGA1!0.98!116.38!HMGA1;;chr8:128748308..128748324,+!p2@MYC!0.97!235.03!MYC;;chr16:86600426..86600441,+!p1@FOXC2!0.97!21.11!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.84!PRRX2;;chr1:170632439..170632465,+!p11@PRRX1!0.93!7.42!PRRX1;;chr1:6479968..6479986,-!p1@HES2!0.93!7.42!HES2;;chr15:83953397..83953425,-!p1@BNC1!0.90!7.99!BNC1;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.27!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.89!6.85!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!0.89!6.85!SOX7;;chr12:96588368..96588394,+!p3@ELK3!0.88!18.26!ELK3;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.40!NR1H3;;chr17:41622765..41622821,-!p2@ETV4!0.88!10.27!ETV4;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.27!ZBTB38;;chr3:12330560..12330579,+!p1@PPARG!0.87!7.42!PPARG;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.28!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.86!6.28!RUNX1T1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.23!RARG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.76!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.70!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.70!PRRX2;;chr11:65687222..65687240,+!p7@DRAP1!0.82!7.42!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!656.61!HMGA1;;chr11:65686952..65686975,+!p5@DRAP1!0.79!30.81!DRAP1;;chr19:13213511..13213545,-!p2@LYL1!0.79!5.70!LYL1;;chr1:170632959..170632987,+!p4@PRRX1!0.79!5.70!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.79!5.13!TBX20;;chr4:81118647..81118666,+!p1@PRDM8!0.78!6.85!PRDM8;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.96!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.39!TOX2;;chr17:59477275..59477286,+!p3@TBX2!0.75!6.28!TBX2;;chr17:7493405..7493419,-!p1@SOX15!0.75!4.56!SOX15;;chr8:93074848..93074871,-!p3@RUNX1T1!0.75!4.56!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.56!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.56!PRRX1;;chr3:12329358..12329393,+!p3@PPARG!0.74!11.98!PPARG;;chr8:128747661..128747703,+!p6@MYC!0.74!6.28!MYC;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.28!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.13!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.56!GLIS1;;chr3:12329397..12329433,+!p2@PPARG!0.71!10.27!PPARG;;chr15:42749722..42749739,-!p2@ZFP106!0.71!7.99!ZFP106;;chr11:46299199..46299233,+!p1@CREB3L1!0.70!23.39!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.70!3.99!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.68!6.28!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.56!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.65!91.85!AEBP1;;chr16:4322832..4322907,-!p1@TFAP4!0.65!30.24!TFAP4;;chr11:47279248..47279264,+!p3@NR1H3!0.65!3.99!NR1H3;;chr5:2751785..2751808,-!p2@IRX2!0.65!3.42!IRX2;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.42!RFX8;;chr2:223163706..223163730,-!p1@PAX3!0.65!3.42!PAX3;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.42!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!0.65!3.42!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.65!3.42!PRRX1;;chr20:39946361..39946379,-!p2@ZHX3!0.64!11.41!ZHX3;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.97!PHB2;;chr5:321810..321877,+!p1@AHRR!0.63!11.98!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.85!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.70!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.63!5.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.13!SATB2;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.56!TOX2;;chr8:128747757..128747800,+!p7@MYC!0.62!4.56!MYC;;chr15:96869114..96869160,+!p11@NR2F2!0.62!4.56!NR2F2;;chr1:8938766..8938774,-!p2@ENO1!0.61!255.57!ENO1;;chr14:611161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| |expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.88!2122.16!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.53!103.26!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.34!TWIST2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.10!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!31.95!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.38!62.18!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.67!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.36!28.52!SOX18;;chr8:25902876..25902936,-!p1@EBF2!1.32!19.97!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.26!47.35!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!1.25!29.09!DRAP1;;chr21:39870339..39870443,-!p1@ERG!1.21!15.40!ERG;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.69!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.15!14.83!TCF4;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.26!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.55!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.12!20.54!TCF12;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.98!RFX8;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.93!FOSL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.69!TFAP2C;;chr17:59477233..59477263,+!p1@TBX2!1.06!33.09!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.05!46.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.95!HMGA2;;chr17:6926362..6926377,+!p1@BCL6B!1.05!10.27!BCL6B;;chr11:65667846..65667868,-!p1@FOSL1!1.04!266.41!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.64!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.41!ZBTB38;;chr6:34204973..34204990,+!p4@HMGA1!0.98!116.38!HMGA1;;chr8:128748308..128748324,+!p2@MYC!0.97!235.03!MYC;;chr16:86600426..86600441,+!p1@FOXC2!0.97!21.11!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.84!PRRX2;;chr1:170632439..170632465,+!p11@PRRX1!0.93!7.42!PRRX1;;chr1:6479968..6479986,-!p1@HES2!0.93!7.42!HES2;;chr15:83953397..83953425,-!p1@BNC1!0.90!7.99!BNC1;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.27!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.89!6.85!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!0.89!6.85!SOX7;;chr12:96588368..96588394,+!p3@ELK3!0.88!18.26!ELK3;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.40!NR1H3;;chr17:41622765..41622821,-!p2@ETV4!0.88!10.27!ETV4;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.27!ZBTB38;;chr3:12330560..12330579,+!p1@PPARG!0.87!7.42!PPARG;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.28!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.86!6.28!RUNX1T1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.23!RARG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.76!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.70!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.70!PRRX2;;chr11:65687222..65687240,+!p7@DRAP1!0.82!7.42!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!656.61!HMGA1;;chr11:65686952..65686975,+!p5@DRAP1!0.79!30.81!DRAP1;;chr19:13213511..13213545,-!p2@LYL1!0.79!5.70!LYL1;;chr1:170632959..170632987,+!p4@PRRX1!0.79!5.70!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.79!5.13!TBX20;;chr4:81118647..81118666,+!p1@PRDM8!0.78!6.85!PRDM8;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.96!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.39!TOX2;;chr17:59477275..59477286,+!p3@TBX2!0.75!6.28!TBX2;;chr17:7493405..7493419,-!p1@SOX15!0.75!4.56!SOX15;;chr8:93074848..93074871,-!p3@RUNX1T1!0.75!4.56!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.56!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.56!PRRX1;;chr3:12329358..12329393,+!p3@PPARG!0.74!11.98!PPARG;;chr8:128747661..128747703,+!p6@MYC!0.74!6.28!MYC;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.28!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.13!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.56!GLIS1;;chr3:12329397..12329433,+!p2@PPARG!0.71!10.27!PPARG;;chr15:42749722..42749739,-!p2@ZFP106!0.71!7.99!ZFP106;;chr11:46299199..46299233,+!p1@CREB3L1!0.70!23.39!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.70!3.99!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.68!6.28!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.56!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.65!91.85!AEBP1;;chr16:4322832..4322907,-!p1@TFAP4!0.65!30.24!TFAP4;;chr11:47279248..47279264,+!p3@NR1H3!0.65!3.99!NR1H3;;chr5:2751785..2751808,-!p2@IRX2!0.65!3.42!IRX2;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.42!RFX8;;chr2:223163706..223163730,-!p1@PAX3!0.65!3.42!PAX3;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.42!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!0.65!3.42!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.65!3.42!PRRX1;;chr20:39946361..39946379,-!p2@ZHX3!0.64!11.41!ZHX3;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.97!PHB2;;chr5:321810..321877,+!p1@AHRR!0.63!11.98!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.85!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.70!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.63!5.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.13!SATB2;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.56!TOX2;;chr8:128747757..128747800,+!p7@MYC!0.62!4.56!MYC;;chr15:96869114..96869160,+!p11@NR2F2!0.62!4.56!NR2F2;;chr1:8938766..8938774,-!p2@ENO1!0.61!255.57!ENO1;;chr14:611161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TA2!0.18!2.28!MTA2;;chr17:38256973..38256990,-!p5@NR1D1!0.18!2.28!NR1D1;;chr4:146402925..146402957,+!p4@SMAD1!0.18!2.28!SMAD1;;chr2:46524506..46524514,+!p5@EPAS1!0.18!1.71!EPAS1;;chr3:185826814..185826825,-!p3@ETV5!0.18!1.71!ETV5;;chr2:174830540..174830563,-!p8@SP3!0.18!1.14!SP3;;chr3:25469724..25469773,+!p1@RARB!0.18!1.14!RARB;;chr1:61547811..61547837,+!p7@NFIA!0.18!1.14!NFIA;;chr20:48807648..48807671,+!p9@CEBPB!0.18!1.14!CEBPB;;chr8:128752771..128752843,+!p9@MYC!0.18!1.14!MYC;;chr8:80679993..80680011,-!p1@HEY1!0.18!1.14!HEY1;;chrX:66763856..66763896,+!p1@AR!0.18!1.14!AR;;chr15:66994615..66994630,+!p3@SMAD6!0.18!1.14!SMAD6;;chr15:96869292..96869320,+!p15@NR2F2!0.18!1.14!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!0.18!1.14!NR2F2;;chr16:54320158..54320200,-!p5@IRX3!0.18!1.14!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.18!1.14!IRX5;;chr16:67063142..67063153,+!p4@CBFB!0.18!1.14!CBFB;;chr11:113930425..113930471,+!p1@ZBTB16!0.18!1.14!ZBTB16;;chr12:80085255..80085284,-!p9@PAWR!0.18!1.14!PAWR;;chr12:7079807..7079848,-!p1@PHB2!0.17!241.88!PHB2;;chr12:53835508..53835533,+!p1@PRR13,p2@PCBP2!0.17!100.97!PCBP2;;chr9:130953817..130953876,-!p1@CIZ1!0.17!80.44!CIZ1;;chr13:114238997..114239077,+!p1@TFDP1!0.17!66.75!TFDP1;;chr18:3450161..3450183,+!p1@TGIF1!0.17!45.07!TGIF1;;chr17:38474489..38474548,+!p1@RARA!0.17!42.21!RARA;;chr19:11071685..11071798,+!p1@SMARCA4!0.17!37.08!SMARCA4;;chr11:47236489..47236567,+!p2@DDB2!0.17!17.68!DDB2;;chr11:62369108..62369183,-!p3@MTA2!0.17!16.54!MTA2;;chr22:30162924..30163005,-!p1@ZMAT5!0.17!15.97!ZMAT5;;chr19:42580274..42580375,+!p1@ZNF574!0.17!14.83!ZNF574;;chr1:246729483..246729538,-!p2@TFB2M!0.17!11.98!TFB2M;;chr19:4065485..4065546,-!p2@ZBTB7A!0.17!11.41!ZBTB7A;;chr19:49865646..49865718,-!p1@TEAD2!0.17!10.84!TEAD2;;chr15:50647274..50647336,-!p1@GABPB1!0.17!8.56!GABPB1;;chr12:54772960..54773015,-!p3@ZNF385A!0.17!5.70!ZNF385A;;chr19:6280025..6280040,-!p2@MLLT1!0.17!3.99!MLLT1;;chr1:8484142..8484232,-!p10@RERE!0.17!2.85!RERE;;chr1:8763463..8763499,-!p6@RERE!0.17!2.85!RERE;;chr17:46621937..46621966,-!p2@HOXB2!0.17!2.85!HOXB2;;chr19:12721790..12721810,+!p2@ZNF791!0.17!2.85!ZNF791;;chr22:41697497..41697515,+!p2@ZC3H7B!0.17!2.85!ZC3H7B;;chr3:48282536..48282586,+!p2@ZNF589!0.17!2.85!ZNF589;;chr20:25677443..25677464,-!p2@ZNF337!0.17!2.28!ZNF337;;chr1:25256756..25256774,-!p1@RUNX3!0.17!1.71!RUNX3;;chr6:31869828..31869880,-!p1@ZBTB12!0.17!1.71!ZBTB12;;chr16:31724618..31724630,+!p2@ZNF720!0.17!1.71!ZNF720;;chr16:89787973..89788001,+!p3@ZNF276!0.17!1.71!ZNF276;;chr12:122516678..122516687,+!p3@MLXIP!0.17!1.71!MLXIP;;chr14:21566882..21566898,-!p3@ZNF219!0.17!1.14!ZNF219;;chr6:43139248..43139261,+!p4@SRF!0.17!1.14!SRF;;chr19:44037334..44037365,+!p2@ZNF575!0.17!1.14!ZNF575;;chr19:58666399..58666438,-!p3@ZNF329!0.17!1.14!ZNF329;;chr1:247171316..247171336,-!p3@ZNF695!0.17!1.14!ZNF695;;chr10:44144219..44144230,-!p5@ZNF32!0.17!0.57!ZNF32;;chr12:57853565..57853579,+!p1@GLI1!0.17!0.57!GLI1;;chr12:66218152..66218174,+!p10@HMGA2!0.17!0.57!HMGA2;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.16!31.95!MEF2B;;chr19:1863591..1863611,-!p2@KLF16!0.16!11.98!KLF16;;chr16:30418910..30418961,+!p1@ZNF771!0.16!9.13!ZNF771;;chr19:57106647..57106686,+!p1@ZNF71!0.16!7.99!ZNF71;;chr3:128206762..128206781,-!p2@GATA2!0.16!7.42!GATA2;;chr11:62368696..62368759,-!p4@MTA2!0.16!7.42!MTA2;;chr3:40518599..40518664,+!p1@ZNF619!0.16!6.85!ZNF619;;chr5:92918919..92918942,+!p1@NR2F1!0.16!5.13!NR2F1;;chr8:57123815..57123867,-!p1@PLAG1!0.16!4.56!PLAG1;;chr7:102985288..102985310,-!p2@DNAJC2!0.16!2.28!DNAJC2;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.16!2.28!ZKSCAN5;;chr8:145159447..145159458,+!p4@MAF1!0.16!2.28!MAF1;;chr2:46524474..46524491,+!p4@EPAS1!0.16!2.28!EPAS1;;chr19:52408285..52408310,-!p3@ZNF649!0.16!2.28!ZNF649;;chr20:25677399..25677433,-!p3@ZNF337!0.16!1.71!ZNF337;;chr20:50808667..50808729,-!p3@ZFP64!0.16!1.71!ZFP64;;chr17:61920116..61920131,-!p5@SMARCD2!0.16!1.71!SMARCD2;;chr18:51750414..51750449,-!p5@MBD2!0.16!1.71!MBD2;;chr5:43065197..43065244,+!p5@ZNF131!0.16!1.71!ZNF131;;chr15:57025812..57025819,-!p4@ZNF280D!0.16!1.14!ZNF280D;;chr4:57774884..57774924,+!p4@REST!0.16!1.14!REST;;chr1:35657082..35657099,-!p8@SFPQ!0.16!1.14!SFPQ;;chr12:10875768..10875808,-!p3@CSDA!0.16!1.14!CSDA;;chr12:3068196..3068232,+!p9@TEAD4!0.16!0.57!TEAD4;;chr2:25565377..25565389,-!p9@DNMT3A!0.16!0.57!DNMT3A;;chr5:92918860..92918871,+!p10@NR2F1!0.16!0.57!NR2F1;;chr7:100076744..100076749,-!p8@TSC22D4!0.16!0.57!TSC22D4;;chr8:80680078..80680101,-!p3@HEY1!0.16!0.57!HEY1;;chr15:77197781..77197801,-!p3@SCAPER!0.16!0.57!SCAPER;;chr17:42295955..42295964,-!p22@UBTF!0.16!0.57!UBTF;;chr19:39390697..39390713,+!p4@NFKBIB!0.16!0.57!NFKBIB;;chr19:52772811..52772817,+!p3@ZNF766!0.16!0.57!ZNF766;;chr19:56154958..56155027,+!p1@ZNF581!0.15!41.64!ZNF581;;chr10:96122682..96122730,-!p1@NOC3L!0.15!18.26!NOC3L;;chr3:52001448..52001478,-!p2@PCBP4!0.15!17.11!PCBP4;;chr12:77459306..77459365,-!p1@E2F7!0.15!15.40!E2F7;;chr4:26322419..26322479,+!p2@RBPJ!0.15!14.83!RBPJ;;ch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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11346-117G5 | |id=FF:11346-117G5 | ||
|is_a=EFO:0002091;;FF:0000062 | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11379 | |||
|library_id_phase_based=2:CNhs11379 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11346 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.AGTCAA.11346 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11346 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.AGTCAA.11346 | |||
|name=Fibroblast - Dermal, donor2 | |name=Fibroblast - Dermal, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11379,LSID771,release012,COMPLETED | |profile_hcage=CNhs11379,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA106-R10a | |rna_catalog_number=CA106-R10a | ||
| Line 58: | Line 82: | ||
|rna_tube_id=117G5 | |rna_tube_id=117G5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.AGTCAA | |||
|sample_age=68 | |sample_age=68 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=NANOG:1.11331544041;HES1:1.07877615485;ZNF238:0.974700952025;bHLH_family:0.926264031919;PDX1:0.926112063181;TLX1..3_NFIC{dimer}:0.817844922778;PBX1:0.815413519184;HAND1,2:0.79555003523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.79074023742;AR:0.781339363526;LEF1_TCF7_TCF7L1,2:0.778307436561;NR3C1:0.702985606034;TBP:0.700077033471;GFI1:0.686062819052;TP53:0.631367598969;GZF1:0.629352473018;GFI1B:0.616946861067;STAT5{A,B}:0.598541376896;LHX3,4:0.585848589464;POU3F1..4:0.581622029172;HOX{A5,B5}:0.557602900611;ESRRA:0.545140827355;TFAP4:0.513699101892;FOS_FOS{B,L1}_JUN{B,D}:0.495808565346;NFATC1..3:0.491669475225;PAX8:0.485309042811;RXR{A,B,G}:0.475102705626;TBX4,5:0.463314196362;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450614482319;TFDP1:0.447642750552;ADNP_IRX_SIX_ZHX:0.445217108309;ZNF148:0.430699349364;GTF2A1,2:0.420249023156;TEAD1:0.396012157667;EN1,2:0.388385085481;PRRX1,2:0.355248361274;BACH2:0.329579680144;POU1F1:0.316510244114;NFE2L1:0.311529478595;NR5A1,2:0.309664841689;NKX2-1,4:0.30360016226;E2F1..5:0.297182374164;YY1:0.296925816687;SOX5:0.294700070339;TFCP2:0.273445525052;SOX17:0.266803337535;GLI1..3:0.247961130605;SOX{8,9,10}:0.237085820445;ZNF423:0.228685643001;NFE2:0.225887692511;FOSL2:0.225388440554;MTF1:0.223921816308;ELF1,2,4:0.223761158471;GATA6:0.220147153206;NKX2-2,8:0.213769200477;NFY{A,B,C}:0.208938823087;CRX:0.180209575399;CEBPA,B_DDIT3:0.168789869034;RORA:0.16721679912;NFE2L2:0.165230864621;PAX1,9:0.160691650146;NFIX:0.152574917024;SRF:0.151922310214;T:0.130770448021;HOX{A6,A7,B6,B7}:0.116978330744;MYB:0.0891058020198;IKZF1:0.0890637681216;GCM1,2:0.0849593766998;CDC5L:0.0821827537051;HNF1A:0.0399809123957;FOXD3:0.0396951064886;ALX4:0.0390807627697;TAL1_TCF{3,4,12}:0.0377470636;ZBTB6:0.0256302067744;POU2F1..3:0.023171011377;XCPE1{core}:0.0171570163344;ELK1,4_GABP{A,B1}:0.013136678221;NKX3-2:0.00497297192022;HIC1:-0.00228745314555;EBF1:-0.0130691731698;GTF2I:-0.0131925201622;PAX3,7:-0.0135971031001;ZNF143:-0.0207106836862;HNF4A_NR2F1,2:-0.0284197733316;ETS1,2:-0.0322106729988;NRF1:-0.032720712023;MYBL2:-0.0331051316696;TFAP2{A,C}:-0.0530850116581;HSF1,2:-0.062199595494;SPIB:-0.0697490660867;ONECUT1,2:-0.0791967553992;SPZ1:-0.0937017335425;HLF:-0.114379187028;TGIF1:-0.126850312347;MEF2{A,B,C,D}:-0.130265234734;REST:-0.130971676951;NHLH1,2:-0.138402268802;AHR_ARNT_ARNT2:-0.157068392045;HOX{A4,D4}:-0.157355213942;HBP1_HMGB_SSRP1_UBTF:-0.174736061945;TOPORS:-0.184378758795;ESR1:-0.205518859905;PPARG:-0.207049875593;SP1:-0.207445694234;ZIC1..3:-0.2193401939;VSX1,2:-0.219410349314;CUX2:-0.254568161164;UFEwm:-0.276828058335;ATF6:-0.277799466571;CREB1:-0.283355985642;ARID5B:-0.284062026787;KLF4:-0.294858002811;SMAD1..7,9:-0.296110032326;NFKB1_REL_RELA:-0.299970005429;NR1H4:-0.302399038508;OCT4_SOX2{dimer}:-0.306742431782;RFX1:-0.308632136838;SPI1:-0.315585564936;NFIL3:-0.31959548331;ALX1:-0.32299550363;ATF2:-0.329317856906;PAX2:-0.334722565381;PITX1..3:-0.355100977508;LMO2:-0.357720727277;NKX2-3_NKX2-5:-0.364240886081;PAX5:-0.371928958248;ZFP161:-0.37843102531;MYOD1:-0.383249275621;RUNX1..3:-0.38712972707;POU6F1:-0.393656311304;PAX6:-0.394515357167;RREB1:-0.400079843408;FOXL1:-0.401796612147;MYFfamily:-0.401969948456;MZF1:-0.403085266977;TFAP2B:-0.403443334859;RBPJ:-0.410856135838;STAT2,4,6:-0.420284016737;GATA4:-0.428080128054;HIF1A:-0.452021905099;RXRA_VDR{dimer}:-0.459116213076;POU5F1:-0.459930982205;FOXA2:-0.461459130856;FOXM1:-0.465500920697;SNAI1..3:-0.468885962891;FOXQ1:-0.48003444825;FOXO1,3,4:-0.482366251785;BREu{core}:-0.497195627305;ZEB1:-0.531397852325;PRDM1:-0.538628992238;NKX3-1:-0.539018218628;EGR1..3:-0.562217039302;SOX2:-0.570086620598;RFX2..5_RFXANK_RFXAP:-0.574790668651;ATF5_CREB3:-0.578103396854;MTE{core}:-0.608412056682;MED-1{core}:-0.608624340717;JUN:-0.612996653181;MAFB:-0.615119965267;XBP1:-0.618494981467;PATZ1:-0.637246761357;MAZ:-0.657715755429;HOXA9_MEIS1:-0.664099437822;TEF:-0.672554339896;NR6A1:-0.686347319705;IRF7:-0.688083475227;DMAP1_NCOR{1,2}_SMARC:-0.688210459676;FOX{I1,J2}:-0.688855133319;FOX{F1,F2,J1}:-0.708871287594;IKZF2:-0.747399355635;ZNF384:-0.748176450507;FOX{D1,D2}:-0.7754691215;STAT1,3:-0.781903630217;NANOG{mouse}:-0.784062605588;IRF1,2:-0.802035212141;SREBF1,2:-0.850876231659;HMGA1,2:-0.861849913258;FOXP1:-0.966281449511;DBP:-0.978958297593;HMX1:-1.05588359337;TLX2:-1.08138183331;NKX6-1,2:-1.10033073942;EP300:-1.10034722919;ATF4:-1.11939908019;PAX4:-1.16628214989;FOXP3:-1.19267510496;BPTF:-1.24171085771;EVI1:-1.24486342996;ZBTB16:-1.31011044651;AIRE:-1.31702208983;FOXN1:-1.36470979826;CDX1,2,4:-1.39924324615 | |top_motifs=NANOG:1.11331544041;HES1:1.07877615485;ZNF238:0.974700952025;bHLH_family:0.926264031919;PDX1:0.926112063181;TLX1..3_NFIC{dimer}:0.817844922778;PBX1:0.815413519184;HAND1,2:0.79555003523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.79074023742;AR:0.781339363526;LEF1_TCF7_TCF7L1,2:0.778307436561;NR3C1:0.702985606034;TBP:0.700077033471;GFI1:0.686062819052;TP53:0.631367598969;GZF1:0.629352473018;GFI1B:0.616946861067;STAT5{A,B}:0.598541376896;LHX3,4:0.585848589464;POU3F1..4:0.581622029172;HOX{A5,B5}:0.557602900611;ESRRA:0.545140827355;TFAP4:0.513699101892;FOS_FOS{B,L1}_JUN{B,D}:0.495808565346;NFATC1..3:0.491669475225;PAX8:0.485309042811;RXR{A,B,G}:0.475102705626;TBX4,5:0.463314196362;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450614482319;TFDP1:0.447642750552;ADNP_IRX_SIX_ZHX:0.445217108309;ZNF148:0.430699349364;GTF2A1,2:0.420249023156;TEAD1:0.396012157667;EN1,2:0.388385085481;PRRX1,2:0.355248361274;BACH2:0.329579680144;POU1F1:0.316510244114;NFE2L1:0.311529478595;NR5A1,2:0.309664841689;NKX2-1,4:0.30360016226;E2F1..5:0.297182374164;YY1:0.296925816687;SOX5:0.294700070339;TFCP2:0.273445525052;SOX17:0.266803337535;GLI1..3:0.247961130605;SOX{8,9,10}:0.237085820445;ZNF423:0.228685643001;NFE2:0.225887692511;FOSL2:0.225388440554;MTF1:0.223921816308;ELF1,2,4:0.223761158471;GATA6:0.220147153206;NKX2-2,8:0.213769200477;NFY{A,B,C}:0.208938823087;CRX:0.180209575399;CEBPA,B_DDIT3:0.168789869034;RORA:0.16721679912;NFE2L2:0.165230864621;PAX1,9:0.160691650146;NFIX:0.152574917024;SRF:0.151922310214;T:0.130770448021;HOX{A6,A7,B6,B7}:0.116978330744;MYB:0.0891058020198;IKZF1:0.0890637681216;GCM1,2:0.0849593766998;CDC5L:0.0821827537051;HNF1A:0.0399809123957;FOXD3:0.0396951064886;ALX4:0.0390807627697;TAL1_TCF{3,4,12}:0.0377470636;ZBTB6:0.0256302067744;POU2F1..3:0.023171011377;XCPE1{core}:0.0171570163344;ELK1,4_GABP{A,B1}:0.013136678221;NKX3-2:0.00497297192022;HIC1:-0.00228745314555;EBF1:-0.0130691731698;GTF2I:-0.0131925201622;PAX3,7:-0.0135971031001;ZNF143:-0.0207106836862;HNF4A_NR2F1,2:-0.0284197733316;ETS1,2:-0.0322106729988;NRF1:-0.032720712023;MYBL2:-0.0331051316696;TFAP2{A,C}:-0.0530850116581;HSF1,2:-0.062199595494;SPIB:-0.0697490660867;ONECUT1,2:-0.0791967553992;SPZ1:-0.0937017335425;HLF:-0.114379187028;TGIF1:-0.126850312347;MEF2{A,B,C,D}:-0.130265234734;REST:-0.130971676951;NHLH1,2:-0.138402268802;AHR_ARNT_ARNT2:-0.157068392045;HOX{A4,D4}:-0.157355213942;HBP1_HMGB_SSRP1_UBTF:-0.174736061945;TOPORS:-0.184378758795;ESR1:-0.205518859905;PPARG:-0.207049875593;SP1:-0.207445694234;ZIC1..3:-0.2193401939;VSX1,2:-0.219410349314;CUX2:-0.254568161164;UFEwm:-0.276828058335;ATF6:-0.277799466571;CREB1:-0.283355985642;ARID5B:-0.284062026787;KLF4:-0.294858002811;SMAD1..7,9:-0.296110032326;NFKB1_REL_RELA:-0.299970005429;NR1H4:-0.302399038508;OCT4_SOX2{dimer}:-0.306742431782;RFX1:-0.308632136838;SPI1:-0.315585564936;NFIL3:-0.31959548331;ALX1:-0.32299550363;ATF2:-0.329317856906;PAX2:-0.334722565381;PITX1..3:-0.355100977508;LMO2:-0.357720727277;NKX2-3_NKX2-5:-0.364240886081;PAX5:-0.371928958248;ZFP161:-0.37843102531;MYOD1:-0.383249275621;RUNX1..3:-0.38712972707;POU6F1:-0.393656311304;PAX6:-0.394515357167;RREB1:-0.400079843408;FOXL1:-0.401796612147;MYFfamily:-0.401969948456;MZF1:-0.403085266977;TFAP2B:-0.403443334859;RBPJ:-0.410856135838;STAT2,4,6:-0.420284016737;GATA4:-0.428080128054;HIF1A:-0.452021905099;RXRA_VDR{dimer}:-0.459116213076;POU5F1:-0.459930982205;FOXA2:-0.461459130856;FOXM1:-0.465500920697;SNAI1..3:-0.468885962891;FOXQ1:-0.48003444825;FOXO1,3,4:-0.482366251785;BREu{core}:-0.497195627305;ZEB1:-0.531397852325;PRDM1:-0.538628992238;NKX3-1:-0.539018218628;EGR1..3:-0.562217039302;SOX2:-0.570086620598;RFX2..5_RFXANK_RFXAP:-0.574790668651;ATF5_CREB3:-0.578103396854;MTE{core}:-0.608412056682;MED-1{core}:-0.608624340717;JUN:-0.612996653181;MAFB:-0.615119965267;XBP1:-0.618494981467;PATZ1:-0.637246761357;MAZ:-0.657715755429;HOXA9_MEIS1:-0.664099437822;TEF:-0.672554339896;NR6A1:-0.686347319705;IRF7:-0.688083475227;DMAP1_NCOR{1,2}_SMARC:-0.688210459676;FOX{I1,J2}:-0.688855133319;FOX{F1,F2,J1}:-0.708871287594;IKZF2:-0.747399355635;ZNF384:-0.748176450507;FOX{D1,D2}:-0.7754691215;STAT1,3:-0.781903630217;NANOG{mouse}:-0.784062605588;IRF1,2:-0.802035212141;SREBF1,2:-0.850876231659;HMGA1,2:-0.861849913258;FOXP1:-0.966281449511;DBP:-0.978958297593;HMX1:-1.05588359337;TLX2:-1.08138183331;NKX6-1,2:-1.10033073942;EP300:-1.10034722919;ATF4:-1.11939908019;PAX4:-1.16628214989;FOXP3:-1.19267510496;BPTF:-1.24171085771;EVI1:-1.24486342996;ZBTB16:-1.31011044651;AIRE:-1.31702208983;FOXN1:-1.36470979826;CDX1,2,4:-1.39924324615 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11346-117G5;search_select_hide=table117:FF:11346-117G5 | |||
}} | }} | ||
Latest revision as of 17:54, 4 June 2020
| Name: | Fibroblast - Dermal, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11379 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11379
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11379
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.122 |
| 10 | 10 | 0.453 |
| 100 | 100 | 0.369 |
| 101 | 101 | 0.646 |
| 102 | 102 | 0.272 |
| 103 | 103 | 0.966 |
| 104 | 104 | 0.315 |
| 105 | 105 | 0.224 |
| 106 | 106 | 0.656 |
| 107 | 107 | 0.298 |
| 108 | 108 | 0.36 |
| 109 | 109 | 0.00222 |
| 11 | 11 | 0.0457 |
| 110 | 110 | 0.0165 |
| 111 | 111 | 0.604 |
| 112 | 112 | 0.882 |
| 113 | 113 | 0.343 |
| 114 | 114 | 0.133 |
| 115 | 115 | 0.725 |
| 116 | 116 | 0.55 |
| 117 | 117 | 0.525 |
| 118 | 118 | 0.885 |
| 119 | 119 | 0.352 |
| 12 | 12 | 0.78 |
| 120 | 120 | 0.103 |
| 121 | 121 | 0.308 |
| 122 | 122 | 0.483 |
| 123 | 123 | 0.0973 |
| 124 | 124 | 0.649 |
| 125 | 125 | 0.574 |
| 126 | 126 | 0.898 |
| 127 | 127 | 0.177 |
| 128 | 128 | 0.382 |
| 129 | 129 | 0.86 |
| 13 | 13 | 0.104 |
| 130 | 130 | 0.0711 |
| 131 | 131 | 0.755 |
| 132 | 132 | 0.903 |
| 133 | 133 | 0.188 |
| 134 | 134 | 0.425 |
| 135 | 135 | 0.671 |
| 136 | 136 | 0.308 |
| 137 | 137 | 0.178 |
| 138 | 138 | 0.762 |
| 139 | 139 | 0.943 |
| 14 | 14 | 0.402 |
| 140 | 140 | 0.508 |
| 141 | 141 | 0.715 |
| 142 | 142 | 0.89 |
| 143 | 143 | 0.0418 |
| 144 | 144 | 0.517 |
| 145 | 145 | 0.0277 |
| 146 | 146 | 0.0337 |
| 147 | 147 | 0.0835 |
| 148 | 148 | 0.507 |
| 149 | 149 | 0.179 |
| 15 | 15 | 0.322 |
| 150 | 150 | 0.279 |
| 151 | 151 | 0.658 |
| 152 | 152 | 0.158 |
| 153 | 153 | 0.479 |
| 154 | 154 | 0.559 |
| 155 | 155 | 0.126 |
| 156 | 156 | 0.369 |
| 157 | 157 | 0.43 |
| 158 | 158 | 0.204 |
| 159 | 159 | 0.488 |
| 16 | 16 | 0.799 |
| 160 | 160 | 0.00282 |
| 161 | 161 | 0.777 |
| 162 | 162 | 0.961 |
| 163 | 163 | 0.985 |
| 164 | 164 | 0.827 |
| 165 | 165 | 0.646 |
| 166 | 166 | 0.736 |
| 167 | 167 | 0.431 |
| 168 | 168 | 0.472 |
| 169 | 169 | 0.0518 |
| 17 | 17 | 0.191 |
| 18 | 18 | 0.0744 |
| 19 | 19 | 0.114 |
| 2 | 2 | 0.78 |
| 20 | 20 | 0.905 |
| 21 | 21 | 0.444 |
| 22 | 22 | 0.21 |
| 23 | 23 | 0.479 |
| 24 | 24 | 0.134 |
| 25 | 25 | 0.66 |
| 26 | 26 | 0.0888 |
| 27 | 27 | 0.288 |
| 28 | 28 | 0.133 |
| 29 | 29 | 0.682 |
| 3 | 3 | 0.485 |
| 30 | 30 | 0.611 |
| 31 | 31 | 0.882 |
| 32 | 32 | 0.817 |
| 33 | 33 | 0.0186 |
| 34 | 34 | 0.375 |
| 35 | 35 | 0.813 |
| 36 | 36 | 0.143 |
| 37 | 37 | 0.193 |
| 38 | 38 | 0.42 |
| 39 | 39 | 0.554 |
| 4 | 4 | 0.636 |
| 40 | 40 | 0.0469 |
| 41 | 41 | 0.586 |
| 42 | 42 | 0.355 |
| 43 | 43 | 0.232 |
| 44 | 44 | 0.407 |
| 45 | 45 | 0.688 |
| 46 | 46 | 0.0965 |
| 47 | 47 | 0.217 |
| 48 | 48 | 0.0493 |
| 49 | 49 | 0.273 |
| 5 | 5 | 0.758 |
| 50 | 50 | 0.329 |
| 51 | 51 | 0.647 |
| 52 | 52 | 0.646 |
| 53 | 53 | 0.784 |
| 54 | 54 | 0.721 |
| 55 | 55 | 0.836 |
| 56 | 56 | 0.503 |
| 57 | 57 | 0.0382 |
| 58 | 58 | 0.958 |
| 59 | 59 | 0.604 |
| 6 | 6 | 0.664 |
| 60 | 60 | 0.872 |
| 61 | 61 | 0.781 |
| 62 | 62 | 0.613 |
| 63 | 63 | 0.112 |
| 64 | 64 | 0.315 |
| 65 | 65 | 0.29 |
| 66 | 66 | 0.0156 |
| 67 | 67 | 0.735 |
| 68 | 68 | 0.0919 |
| 69 | 69 | 0.182 |
| 7 | 7 | 0.541 |
| 70 | 70 | 0.402 |
| 71 | 71 | 0.0177 |
| 72 | 72 | 0.97 |
| 73 | 73 | 0.0134 |
| 74 | 74 | 0.722 |
| 75 | 75 | 0.28 |
| 76 | 76 | 0.928 |
| 77 | 77 | 0.122 |
| 78 | 78 | 0.991 |
| 79 | 79 | 0.356 |
| 8 | 8 | 0.00344 |
| 80 | 80 | 0.579 |
| 81 | 81 | 0.611 |
| 82 | 82 | 0.74 |
| 83 | 83 | 0.551 |
| 84 | 84 | 0.0856 |
| 85 | 85 | 0.584 |
| 86 | 86 | 0.629 |
| 87 | 87 | 0.0439 |
| 88 | 88 | 0.197 |
| 89 | 89 | 0.0963 |
| 9 | 9 | 0.14 |
| 90 | 90 | 0.0715 |
| 91 | 91 | 0.731 |
| 92 | 92 | 0.799 |
| 93 | 93 | 0.328 |
| 94 | 94 | 0.525 |
| 95 | 95 | 0.0265 |
| 96 | 96 | 0.219 |
| 97 | 97 | 0.302 |
| 98 | 98 | 0.0329 |
| 99 | 99 | 9.36232e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11379
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
