FF:12235-129G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005437 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008537;DRR009409;DRZ000834;DRZ002219;DRZ012184;DRZ013569 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000010 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:111314186..111314204,-!p1@ZBED2!2.42!259.52!ZBED2;;chr19:45971246..45971265,+!p1@FOSB!2.01!1768.14!FOSB;;chr5:153857778..153857794,-!p1@HAND1!1.90!79.26!HAND1;;chr6:19837592..19837621,+!p1@ID4!1.87!424.49!ID4;;chr10:8096772..8096787,+!p2@GATA3!1.87!86.19!GATA3;;chr20:39317868..39317884,-!p1@MAFB!1.81!711.94!MAFB;;chr17:7493405..7493419,-!p1@SOX15!1.77!57.30!SOX15;;chr2:19558373..19558392,-!p1@OSR1!1.74!142.29!OSR1;;chr8:102504651..102504683,+!p1@GRHL2!1.73!52.29!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.69!53.72!IRF6;;chr9:110252035..110252057,-!p1@KLF4!1.68!706.92!KLF4;;chr10:8096631..8096660,+!p1@GATA3!1.68!55.87!GATA3;;chr11:65554528..65554546,+!p1@OVOL1!1.68!46.56!OVOL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.61!49.90!TFAP2C;;chr5:2751762..2751784,-!p1@IRX2!1.57!36.05!IRX2;;chr1:38512457..38512474,-!p1@POU3F1!1.56!38.20!POU3F1;;chr1:212782094..212782109,+!p1@ATF3!1.54!865.45!ATF3;;chr3:111314230..111314241,-!p2@ZBED2!1.54!33.90!ZBED2;;chr4:188916918..188916942,+!p1@ZFP42!1.54!33.42!ZFP42;;chr6:53013620..53013644,-!p1@GCM1!1.52!31.75!GCM1;;chr14:75745523..75745537,+!p1@FOS!1.50!3481.85!FOS;;chr8:10588010..10588030,-!p1@SOX7!1.48!29.13!SOX7;;chr3:12330560..12330579,+!p1@PPARG!1.46!31.75!PPARG;;chr1:201979743..201979762,+!p1@ELF3!1.45!26.98!ELF3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.44!26.26!PEG3;;chr12:52445218..52445237,+!p1@NR4A1!1.41!296.76!NR4A1;;chr13:73633131..73633149,+!p1@KLF5!1.37!232.78!KLF5;;chr13:45010939..45011033,-!p1@TSC22D1!1.36!1389.02!TSC22D1;;chr2:46524897..46524911,+!p2@EPAS1!1.36!60.64!EPAS1;;chr1:201979703..201979721,+!p2@ELF3!1.36!21.73!ELF3;;chr11:65554563..65554576,+!p2@OVOL1!1.36!21.73!OVOL1;;chr17:48072574..48072597,-!p1@DLX3!1.35!21.25!DLX3;;chr8:102504690..102504704,+!p3@GRHL2!1.34!21.01!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.34!21.01!HAND2;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.77!HIF3A;;chr10:8095593..8095625,+!p3@GATA3!1.33!23.64!GATA3;;chr5:2751785..2751808,-!p2@IRX2!1.32!19.82!IRX2;;chr3:32023232..32023273,+!p1@ZNF860!1.30!26.98!ZNF860;;chr2:238600933..238600985,+!p3@LRRFIP1!1.29!98.84!LRRFIP1;;chr7:1577899..1577943,+!p3@MAFK!1.28!17.91!MAFK;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.25!TFAP2A;;chr9:110251836..110251887,-!p4@KLF4!1.25!21.96!KLF4;;chr6:85473156..85473210,-!p2@TBX18!1.24!19.82!TBX18;;chr4:174451370..174451387,-!p1@HAND2!1.24!16.23!HAND2;;chr3:128212033..128212051,-!p1@GATA2!1.22!15.52!GATA2;;chr5:153857800..153857812,-!p2@HAND1!1.22!15.52!HAND1;;chr11:2291814..2291825,-!p2@ASCL2!1.21!15.28!ASCL2;;chrY:2803415..2803468,+!p1@ZFY!1.21!15.28!ZFY;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.64!TFAP2A;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.59!TBX18;;chr6:10419768..10419819,-!p6@TFAP2A!1.17!13.85!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.16!13.61!TFAP2A;;chr1:2461692..2461710,-!p1@HES5!1.16!13.37!HES5;;chr8:102504979..102505010,+!p2@GRHL2!1.15!13.13!GRHL2;;chr16:67881588..67881612,-!p2@CENPT!1.10!16.00!CENPT;;chr1:209979411..209979433,-!p2@IRF6!1.10!11.46!IRF6;;chr17:70117153..70117174,+!p1@SOX9!1.09!115.79!SOX9;;chr3:39195037..39195069,-!p2@CSRNP1!1.09!70.43!CSRNP1;;chr22:21771656..21771662,+!p1@HIC2!1.09!11.22!HIC2;;chr4:38665810..38665827,+!p1@KLF3!1.05!148.98!KLF3;;chr3:128206762..128206781,-!p2@GATA2!1.05!63.74!GATA2;;chrX:107018969..107019024,-!p6@TSC22D3!1.05!14.09!TSC22D3;;chr2:10091815..10091864,+!p1@GRHL1!1.05!13.61!GRHL1;;chr2:238592039..238592054,+!p4@LRRFIP1!1.05!10.27!LRRFIP1;;chr6:12008986..12009016,+!p3@HIVEP1!1.04!31.51!HIVEP1;;chr5:3595934..3595957,+!p2@IRX1!1.03!9.79!IRX1;;chrX:56258844..56258882,+!p1@KLF8!1.01!12.89!KLF8;;chr17:80797886..80797906,-!p1@ZNF750!1.00!9.07!ZNF750;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!79.50!PPP1R13L;;chr17:38256822..38256851,-!p1@NR1D1!0.99!70.43!NR1D1;;chr2:214015343..214015366,-!p3@IKZF2!0.99!8.83!IKZF2;;chr15:60884706..60884743,-!p1@RORA!0.98!45.84!RORA;;chr17:38256799..38256815,-!p3@NR1D1!0.98!15.76!NR1D1;;chr14:75988771..75988826,+!p1@BATF!0.98!11.46!BATF;;chr2:16080659..16080685,+!p1@MYCN!0.98!8.59!MYCN;;chr7:106809470..106809481,+!p2@HBP1!0.97!11.70!HBP1;;chr9:110250697..110250738,-!p2@KLF4!0.97!9.79!KLF4;;chr2:5832508..5832524,+!p1@SOX11!0.97!8.36!SOX11;;chr10:64576105..64576133,-!p1@EGR2!0.96!17.19!EGR2;;chr11:12696102..12696113,+!p5@TEAD1!0.96!8.12!TEAD1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.96!8.12!LRRFIP1;;chr19:17356189..17356221,-!p2@NR2F6!0.95!13.13!NR2F6;;chr16:67881534..67881549,-!p4@CENPT!0.95!7.88!CENPT;;chr14:75746722..75746777,+!p2@FOS!0.94!10.03!FOS;;chr1:6479968..6479986,-!p1@HES2!0.94!7.64!HES2;;chr6:12012536..12012554,+!p4@HIVEP1!0.93!18.62!HIVEP1;;chr17:7492684..7492778,-!p2@SOX15!0.92!16.00!SOX15;;chr3:71630690..71630750,-!p11@FOXP1!0.92!12.41!FOXP1;;chr16:31076332..31076388,-!p3@ZNF668!0.92!7.40!ZNF668;;chr5:121465234..121465263,+!p1@ZNF474!0.92!7.40!ZNF474;;chr3:170075124..170075136,+!p4@SKIL!0.91!10.03!SKIL;;chr5:121465268..121465281,+!p2@ZNF474!0.91!7.16!ZNF474;;chr6:10419824..10419840,-!p9@TFAP2A!0.91!7.16!TFAP2A;;chr20:18038521..18038571,-!p1@OVOL2!0.91!7.16!OVOL2;;chr19:11925071..11925113,+!p1@ZNF440!0.90!53.00!ZNF440;;chr7:101460882..101460923,+!p5@CUX1!0.90!6.92!CUX1;;chrY:21906594..21906622,-!p1@KDM5D!0.90!6.92!KDM5D;;chr3:39195075..39195088,-!p1@CSRNP1!0.89!44.65!CSRNP1;;chr1:23694556..23694584,-!p6@ZNF436!0.89!8.83!ZNF436;;chr5:153857819..153857824,-!p3@HAND1!0.89!6.68!HAND1;;chr19:21203481..21203504,+!p2@ZNF430!0.88!15.76!ZNF430;;chr8:28243785..28243799,-!p6@ZNF395!0.88!8.12!ZNF395;;chrX:107019163..107019179,-!p7@TSC22D3!0.87!7.40!TSC22D3;;chr19:33793430..33793447,-!p1@CEBPA!0.86!27.93!CEBPA;;chr6:106534230..106534254,+!p2@PRDM1!0.86!16.47!PRDM1;;chr2:46612891..46612907,+!p10@EPAS1!0.86!6.21!EPAS1;;chr1:209979449..209979460,-!p3@IRF6!0.86!6.21!IRF6;;chr10:8097321..8097348,+!p4@GATA3!0.86!6.21!GATA3;;chr6:12009042..12009092,+!p6@HIVEP1!0.85!8.12!HIVEP1;;chr5:137801160..137801176,+!p1@EGR1!0.84!628.38!EGR1;;chr6:28048343..28048354,+!p1@ZNF165!0.84!5.97!ZNF165;;chr6:53013605..53013616,-!p2@GCM1!0.83!5.73!GCM1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.83!5.73!ZNF676;;chr3:170075103..170075114,+!p5@SKIL!0.82!7.64!SKIL;;chr18:77155922..77155939,+!p1@NFATC1!0.81!16.00!NFATC1;;chr9:110252074..110252079,-!p3@KLF4!0.81!9.31!KLF4;;chr5:3595977..3595999,+!p1@IRX1!0.81!5.49!IRX1;;chr7:96654133..96654150,-!p1@DLX5!0.81!5.49!DLX5;;chr1:40367668..40367684,-!p2@MYCL1!0.81!5.49!MYCL1;;chr22:38598086..38598105,+!p1@MAFF!0.80!60.88!MAFF;;chr3:141087339..141087387,+!p2@ZBTB38!0.80!58.73!ZBTB38;;chr20:50159198..50159299,-!p1@NFATC2!0.80!8.12!NFATC2;;chr13:73636516..73636532,+!p3@KLF5!0.80!6.21!KLF5;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.20!EGR1;;chr12:53625966..53626012,-!p2@RARG!0.79!14.56!RARG;;chr18:3449720..3449749,+!p2@TGIF1!0.79!11.46!TGIF1;;chr14:75747250..75747267,+!p5@FOS!0.78!5.01!FOS;;chr5:3595961..3595975,+!p3@IRX1!0.78!5.01!IRX1;;chr7:63505799..63505904,+!p1@ZNF727!0.78!5.01!ZNF727;;chr1:59249732..59249749,-!p2@JUN!0.77!64.46!JUN;;chr19:53193731..53193767,-!p1@ZNF83!0.77!47.99!ZNF83;;chr1:59249707..59249727,-!p1@JUN!0.76!219.41!JUN;;chr3:150126065..150126097,+!p1@TSC22D2!0.76!45.60!TSC22D2;;chr19:45579725..45579743,-!p1@ZNF296!0.76!23.64!ZNF296;;chr5:174151612..174151633,+!p2@MSX2!0.76!4.77!MSX2;;chr9:2015335..2015370,+!p1@SMARCA2!0.75!62.31!SMARCA2;;chr2:10183651..10183713,+!p1@KLF11!0.75!37.01!KLF11;;chr19:12902289..12902307,+!p1@JUNB!0.74!1159.58!JUNB;;chr3:101568349..101568365,+!p1@NFKBIZ!0.74!260.95!NFKBIZ;;chr6:144329384..144329405,-!p1@PLAGL1!0.74!58.73!PLAGL1;;chr1:59249688..59249703,-!p3@JUN!0.74!29.84!JUN;;chr19:21324863..21324874,+!p2@ZNF431!0.74!8.36!ZNF431;;chr16:73082004..73082033,-!p5@ZFHX3!0.74!7.64!ZFHX3;;chr10:3824646..3824677,-!p9@KLF6!0.74!4.54!KLF6;;chr19:45977697..45977713,+!p4@FOSB!0.74!4.54!FOSB;;chrX:106960285..106960299,-!p1@TSC22D3!0.73!130.83!TSC22D3;;chr19:11849700..11849803,-!p1@ZNF823!0.73!23.16!ZNF823;;chr2:169312725..169312810,+!p1@CERS6!0.72!117.70!CERS6;;chr1:204042233..204042249,+!p1@SOX13!0.72!30.08!SOX13;;chr2:46524878..46524891,+!p3@EPAS1!0.72!7.88!EPAS1;;chr6:10413188..10413249,-!p7@TFAP2A!0.72!4.30!TFAP2A;;chr8:135708787..135708805,-!p2@ZFAT!0.72!4.30!ZFAT;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.71!12.89!ZNF525;;chr4:87857474..87857489,+!p7@AFF1!0.71!7.64!AFF1;;chr3:39195139..39195150,-!p3@CSRNP1!0.71!5.49!CSRNP1;;chr7:1577111..1577132,+!p4@MAFK!0.71!4.77!MAFK;;chr10:3827389..3827408,-!p1@KLF6!0.70!354.30!KLF6;;chr13:41593425..41593480,-!p1@ELF1!0.70!28.65!ELF1;;chr19:6110474..6110551,-!p1@RFX2!0.70!27.22!RFX2;;chr8:57123815..57123867,-!p1@PLAG1!0.70!18.14!PLAG1;;chr3:150126101..150126118,+!p6@TSC22D2!0.70!6.92!TSC22D2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.49!BCL3;;chr19:46806868..46806883,+!p3@HIF3A!0.70!4.06!HIF3A;;chr19:48773337..48773339,+!p2@ZNF114!0.70!4.06!ZNF114;;chr10:8100691..8100732,+!p5@GATA3!0.70!4.06!GATA3;;chr14:75745247..75745251,+!p14@FOS!0.70!4.06!FOS;;chr4:149363494..149363543,-!p1@NR3C2!0.70!4.06!NR3C2;;chr8:102504932..102504952,+!p4@GRHL2!0.70!4.06!GRHL2;;chr6:43138999..43139017,+!p2@SRF!0.69!26.74!SRF;;chr3:150126759..150126784,+!p2@TSC22D2!0.69!20.29!TSC22D2;;chr15:60884747..60884774,-!p3@RORA!0.69!10.50!RORA;;chrX:70316005..70316034,+!p2@FOXO4!0.69!7.64!FOXO4;;chr5:174151553..174151610,+!p1@MSX2!0.69!6.92!MSX2;;chr21:40177845..40177863,+!p1@ETS2!0.68!260.71!ETS2;;chr19:53636125..53636178,-!p1@ZNF415!0.68!11.94!ZNF415;;chr19:45974032..45974054,+!p9@FOSB!0.68!3.82!FOSB;;chr4:174451350..174451363,-!p3@HAND2!0.68!3.82!HAND2;;chr8:81787006..81787031,-!p2@ZNF704!0.68!3.82!ZNF704;;chrX:56258900..56258917,+!p4@KLF8!0.68!3.82!KLF8;;chr11:67007477..67007493,+!p2@KDM2A!0.67!36.53!KDM2A;;chr6:168227552..168227609,+!p1@MLLT4!0.67!34.38!MLLT4;;chr1:164528410..164528428,+!p1@PBX1!0.67!31.75!PBX1;;chr10:51572408..51572454,+!p3@NCOA4!0.67!24.59!NCOA4;;chr9:102584159..102584174,+!p2@NR4A3!0.67!7.16!NR4A3;;chr18:6414884..6414942,-!p1@L3MBTL4!0.67!4.77!L3MBTL4;;chr13:41635512..41635539,-!p2@ELF1!0.66!23.16!ELF1;;chr16:73093174..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| |expression_enrichment_score=chr3:111314186..111314204,-!p1@ZBED2!2.42!259.52!ZBED2;;chr19:45971246..45971265,+!p1@FOSB!2.01!1768.14!FOSB;;chr5:153857778..153857794,-!p1@HAND1!1.90!79.26!HAND1;;chr6:19837592..19837621,+!p1@ID4!1.87!424.49!ID4;;chr10:8096772..8096787,+!p2@GATA3!1.87!86.19!GATA3;;chr20:39317868..39317884,-!p1@MAFB!1.81!711.94!MAFB;;chr17:7493405..7493419,-!p1@SOX15!1.77!57.30!SOX15;;chr2:19558373..19558392,-!p1@OSR1!1.74!142.29!OSR1;;chr8:102504651..102504683,+!p1@GRHL2!1.73!52.29!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.69!53.72!IRF6;;chr9:110252035..110252057,-!p1@KLF4!1.68!706.92!KLF4;;chr10:8096631..8096660,+!p1@GATA3!1.68!55.87!GATA3;;chr11:65554528..65554546,+!p1@OVOL1!1.68!46.56!OVOL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.61!49.90!TFAP2C;;chr5:2751762..2751784,-!p1@IRX2!1.57!36.05!IRX2;;chr1:38512457..38512474,-!p1@POU3F1!1.56!38.20!POU3F1;;chr1:212782094..212782109,+!p1@ATF3!1.54!865.45!ATF3;;chr3:111314230..111314241,-!p2@ZBED2!1.54!33.90!ZBED2;;chr4:188916918..188916942,+!p1@ZFP42!1.54!33.42!ZFP42;;chr6:53013620..53013644,-!p1@GCM1!1.52!31.75!GCM1;;chr14:75745523..75745537,+!p1@FOS!1.50!3481.85!FOS;;chr8:10588010..10588030,-!p1@SOX7!1.48!29.13!SOX7;;chr3:12330560..12330579,+!p1@PPARG!1.46!31.75!PPARG;;chr1:201979743..201979762,+!p1@ELF3!1.45!26.98!ELF3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.44!26.26!PEG3;;chr12:52445218..52445237,+!p1@NR4A1!1.41!296.76!NR4A1;;chr13:73633131..73633149,+!p1@KLF5!1.37!232.78!KLF5;;chr13:45010939..45011033,-!p1@TSC22D1!1.36!1389.02!TSC22D1;;chr2:46524897..46524911,+!p2@EPAS1!1.36!60.64!EPAS1;;chr1:201979703..201979721,+!p2@ELF3!1.36!21.73!ELF3;;chr11:65554563..65554576,+!p2@OVOL1!1.36!21.73!OVOL1;;chr17:48072574..48072597,-!p1@DLX3!1.35!21.25!DLX3;;chr8:102504690..102504704,+!p3@GRHL2!1.34!21.01!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.34!21.01!HAND2;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.77!HIF3A;;chr10:8095593..8095625,+!p3@GATA3!1.33!23.64!GATA3;;chr5:2751785..2751808,-!p2@IRX2!1.32!19.82!IRX2;;chr3:32023232..32023273,+!p1@ZNF860!1.30!26.98!ZNF860;;chr2:238600933..238600985,+!p3@LRRFIP1!1.29!98.84!LRRFIP1;;chr7:1577899..1577943,+!p3@MAFK!1.28!17.91!MAFK;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.25!TFAP2A;;chr9:110251836..110251887,-!p4@KLF4!1.25!21.96!KLF4;;chr6:85473156..85473210,-!p2@TBX18!1.24!19.82!TBX18;;chr4:174451370..174451387,-!p1@HAND2!1.24!16.23!HAND2;;chr3:128212033..128212051,-!p1@GATA2!1.22!15.52!GATA2;;chr5:153857800..153857812,-!p2@HAND1!1.22!15.52!HAND1;;chr11:2291814..2291825,-!p2@ASCL2!1.21!15.28!ASCL2;;chrY:2803415..2803468,+!p1@ZFY!1.21!15.28!ZFY;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.64!TFAP2A;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.59!TBX18;;chr6:10419768..10419819,-!p6@TFAP2A!1.17!13.85!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.16!13.61!TFAP2A;;chr1:2461692..2461710,-!p1@HES5!1.16!13.37!HES5;;chr8:102504979..102505010,+!p2@GRHL2!1.15!13.13!GRHL2;;chr16:67881588..67881612,-!p2@CENPT!1.10!16.00!CENPT;;chr1:209979411..209979433,-!p2@IRF6!1.10!11.46!IRF6;;chr17:70117153..70117174,+!p1@SOX9!1.09!115.79!SOX9;;chr3:39195037..39195069,-!p2@CSRNP1!1.09!70.43!CSRNP1;;chr22:21771656..21771662,+!p1@HIC2!1.09!11.22!HIC2;;chr4:38665810..38665827,+!p1@KLF3!1.05!148.98!KLF3;;chr3:128206762..128206781,-!p2@GATA2!1.05!63.74!GATA2;;chrX:107018969..107019024,-!p6@TSC22D3!1.05!14.09!TSC22D3;;chr2:10091815..10091864,+!p1@GRHL1!1.05!13.61!GRHL1;;chr2:238592039..238592054,+!p4@LRRFIP1!1.05!10.27!LRRFIP1;;chr6:12008986..12009016,+!p3@HIVEP1!1.04!31.51!HIVEP1;;chr5:3595934..3595957,+!p2@IRX1!1.03!9.79!IRX1;;chrX:56258844..56258882,+!p1@KLF8!1.01!12.89!KLF8;;chr17:80797886..80797906,-!p1@ZNF750!1.00!9.07!ZNF750;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!79.50!PPP1R13L;;chr17:38256822..38256851,-!p1@NR1D1!0.99!70.43!NR1D1;;chr2:214015343..214015366,-!p3@IKZF2!0.99!8.83!IKZF2;;chr15:60884706..60884743,-!p1@RORA!0.98!45.84!RORA;;chr17:38256799..38256815,-!p3@NR1D1!0.98!15.76!NR1D1;;chr14:75988771..75988826,+!p1@BATF!0.98!11.46!BATF;;chr2:16080659..16080685,+!p1@MYCN!0.98!8.59!MYCN;;chr7:106809470..106809481,+!p2@HBP1!0.97!11.70!HBP1;;chr9:110250697..110250738,-!p2@KLF4!0.97!9.79!KLF4;;chr2:5832508..5832524,+!p1@SOX11!0.97!8.36!SOX11;;chr10:64576105..64576133,-!p1@EGR2!0.96!17.19!EGR2;;chr11:12696102..12696113,+!p5@TEAD1!0.96!8.12!TEAD1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.96!8.12!LRRFIP1;;chr19:17356189..17356221,-!p2@NR2F6!0.95!13.13!NR2F6;;chr16:67881534..67881549,-!p4@CENPT!0.95!7.88!CENPT;;chr14:75746722..75746777,+!p2@FOS!0.94!10.03!FOS;;chr1:6479968..6479986,-!p1@HES2!0.94!7.64!HES2;;chr6:12012536..12012554,+!p4@HIVEP1!0.93!18.62!HIVEP1;;chr17:7492684..7492778,-!p2@SOX15!0.92!16.00!SOX15;;chr3:71630690..71630750,-!p11@FOXP1!0.92!12.41!FOXP1;;chr16:31076332..31076388,-!p3@ZNF668!0.92!7.40!ZNF668;;chr5:121465234..121465263,+!p1@ZNF474!0.92!7.40!ZNF474;;chr3:170075124..170075136,+!p4@SKIL!0.91!10.03!SKIL;;chr5:121465268..121465281,+!p2@ZNF474!0.91!7.16!ZNF474;;chr6:10419824..10419840,-!p9@TFAP2A!0.91!7.16!TFAP2A;;chr20:18038521..18038571,-!p1@OVOL2!0.91!7.16!OVOL2;;chr19:11925071..11925113,+!p1@ZNF440!0.90!53.00!ZNF440;;chr7:101460882..101460923,+!p5@CUX1!0.90!6.92!CUX1;;chrY:21906594..21906622,-!p1@KDM5D!0.90!6.92!KDM5D;;chr3:39195075..39195088,-!p1@CSRNP1!0.89!44.65!CSRNP1;;chr1:23694556..23694584,-!p6@ZNF436!0.89!8.83!ZNF436;;chr5:153857819..153857824,-!p3@HAND1!0.89!6.68!HAND1;;chr19:21203481..21203504,+!p2@ZNF430!0.88!15.76!ZNF430;;chr8:28243785..28243799,-!p6@ZNF395!0.88!8.12!ZNF395;;chrX:107019163..107019179,-!p7@TSC22D3!0.87!7.40!TSC22D3;;chr19:33793430..33793447,-!p1@CEBPA!0.86!27.93!CEBPA;;chr6:106534230..106534254,+!p2@PRDM1!0.86!16.47!PRDM1;;chr2:46612891..46612907,+!p10@EPAS1!0.86!6.21!EPAS1;;chr1:209979449..209979460,-!p3@IRF6!0.86!6.21!IRF6;;chr10:8097321..8097348,+!p4@GATA3!0.86!6.21!GATA3;;chr6:12009042..12009092,+!p6@HIVEP1!0.85!8.12!HIVEP1;;chr5:137801160..137801176,+!p1@EGR1!0.84!628.38!EGR1;;chr6:28048343..28048354,+!p1@ZNF165!0.84!5.97!ZNF165;;chr6:53013605..53013616,-!p2@GCM1!0.83!5.73!GCM1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.83!5.73!ZNF676;;chr3:170075103..170075114,+!p5@SKIL!0.82!7.64!SKIL;;chr18:77155922..77155939,+!p1@NFATC1!0.81!16.00!NFATC1;;chr9:110252074..110252079,-!p3@KLF4!0.81!9.31!KLF4;;chr5:3595977..3595999,+!p1@IRX1!0.81!5.49!IRX1;;chr7:96654133..96654150,-!p1@DLX5!0.81!5.49!DLX5;;chr1:40367668..40367684,-!p2@MYCL1!0.81!5.49!MYCL1;;chr22:38598086..38598105,+!p1@MAFF!0.80!60.88!MAFF;;chr3:141087339..141087387,+!p2@ZBTB38!0.80!58.73!ZBTB38;;chr20:50159198..50159299,-!p1@NFATC2!0.80!8.12!NFATC2;;chr13:73636516..73636532,+!p3@KLF5!0.80!6.21!KLF5;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.20!EGR1;;chr12:53625966..53626012,-!p2@RARG!0.79!14.56!RARG;;chr18:3449720..3449749,+!p2@TGIF1!0.79!11.46!TGIF1;;chr14:75747250..75747267,+!p5@FOS!0.78!5.01!FOS;;chr5:3595961..3595975,+!p3@IRX1!0.78!5.01!IRX1;;chr7:63505799..63505904,+!p1@ZNF727!0.78!5.01!ZNF727;;chr1:59249732..59249749,-!p2@JUN!0.77!64.46!JUN;;chr19:53193731..53193767,-!p1@ZNF83!0.77!47.99!ZNF83;;chr1:59249707..59249727,-!p1@JUN!0.76!219.41!JUN;;chr3:150126065..150126097,+!p1@TSC22D2!0.76!45.60!TSC22D2;;chr19:45579725..45579743,-!p1@ZNF296!0.76!23.64!ZNF296;;chr5:174151612..174151633,+!p2@MSX2!0.76!4.77!MSX2;;chr9:2015335..2015370,+!p1@SMARCA2!0.75!62.31!SMARCA2;;chr2:10183651..10183713,+!p1@KLF11!0.75!37.01!KLF11;;chr19:12902289..12902307,+!p1@JUNB!0.74!1159.58!JUNB;;chr3:101568349..101568365,+!p1@NFKBIZ!0.74!260.95!NFKBIZ;;chr6:144329384..144329405,-!p1@PLAGL1!0.74!58.73!PLAGL1;;chr1:59249688..59249703,-!p3@JUN!0.74!29.84!JUN;;chr19:21324863..21324874,+!p2@ZNF431!0.74!8.36!ZNF431;;chr16:73082004..73082033,-!p5@ZFHX3!0.74!7.64!ZFHX3;;chr10:3824646..3824677,-!p9@KLF6!0.74!4.54!KLF6;;chr19:45977697..45977713,+!p4@FOSB!0.74!4.54!FOSB;;chrX:106960285..106960299,-!p1@TSC22D3!0.73!130.83!TSC22D3;;chr19:11849700..11849803,-!p1@ZNF823!0.73!23.16!ZNF823;;chr2:169312725..169312810,+!p1@CERS6!0.72!117.70!CERS6;;chr1:204042233..204042249,+!p1@SOX13!0.72!30.08!SOX13;;chr2:46524878..46524891,+!p3@EPAS1!0.72!7.88!EPAS1;;chr6:10413188..10413249,-!p7@TFAP2A!0.72!4.30!TFAP2A;;chr8:135708787..135708805,-!p2@ZFAT!0.72!4.30!ZFAT;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.71!12.89!ZNF525;;chr4:87857474..87857489,+!p7@AFF1!0.71!7.64!AFF1;;chr3:39195139..39195150,-!p3@CSRNP1!0.71!5.49!CSRNP1;;chr7:1577111..1577132,+!p4@MAFK!0.71!4.77!MAFK;;chr10:3827389..3827408,-!p1@KLF6!0.70!354.30!KLF6;;chr13:41593425..41593480,-!p1@ELF1!0.70!28.65!ELF1;;chr19:6110474..6110551,-!p1@RFX2!0.70!27.22!RFX2;;chr8:57123815..57123867,-!p1@PLAG1!0.70!18.14!PLAG1;;chr3:150126101..150126118,+!p6@TSC22D2!0.70!6.92!TSC22D2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.49!BCL3;;chr19:46806868..46806883,+!p3@HIF3A!0.70!4.06!HIF3A;;chr19:48773337..48773339,+!p2@ZNF114!0.70!4.06!ZNF114;;chr10:8100691..8100732,+!p5@GATA3!0.70!4.06!GATA3;;chr14:75745247..75745251,+!p14@FOS!0.70!4.06!FOS;;chr4:149363494..149363543,-!p1@NR3C2!0.70!4.06!NR3C2;;chr8:102504932..102504952,+!p4@GRHL2!0.70!4.06!GRHL2;;chr6:43138999..43139017,+!p2@SRF!0.69!26.74!SRF;;chr3:150126759..150126784,+!p2@TSC22D2!0.69!20.29!TSC22D2;;chr15:60884747..60884774,-!p3@RORA!0.69!10.50!RORA;;chrX:70316005..70316034,+!p2@FOXO4!0.69!7.64!FOXO4;;chr5:174151553..174151610,+!p1@MSX2!0.69!6.92!MSX2;;chr21:40177845..40177863,+!p1@ETS2!0.68!260.71!ETS2;;chr19:53636125..53636178,-!p1@ZNF415!0.68!11.94!ZNF415;;chr19:45974032..45974054,+!p9@FOSB!0.68!3.82!FOSB;;chr4:174451350..174451363,-!p3@HAND2!0.68!3.82!HAND2;;chr8:81787006..81787031,-!p2@ZNF704!0.68!3.82!ZNF704;;chrX:56258900..56258917,+!p4@KLF8!0.68!3.82!KLF8;;chr11:67007477..67007493,+!p2@KDM2A!0.67!36.53!KDM2A;;chr6:168227552..168227609,+!p1@MLLT4!0.67!34.38!MLLT4;;chr1:164528410..164528428,+!p1@PBX1!0.67!31.75!PBX1;;chr10:51572408..51572454,+!p3@NCOA4!0.67!24.59!NCOA4;;chr9:102584159..102584174,+!p2@NR4A3!0.67!7.16!NR4A3;;chr18:6414884..6414942,-!p1@L3MBTL4!0.67!4.77!L3MBTL4;;chr13:41635512..41635539,-!p2@ELF1!0.66!23.16!ELF1;;chr16:73093174..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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12235-129G3 | |id=FF:12235-129G3 | ||
|is_a=EFO:0002091;;FF:0000010 | |is_a=EFO:0002091;;FF:0000010 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12502 | |||
|library_id_phase_based=2:CNhs12502 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12235 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12235 | |||
|name=amniotic membrane cells, donor1 | |name=amniotic membrane cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12502,LSID918,release012,COMPLETED | |profile_hcage=CNhs12502,LSID918,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.117288181669063,0,0.084762123621365,0,0,-0.067336296198156,0.16952424724273,0.335811175728871,-0.06532185637237,0,0,0,0.0773695777415159,0,0,0,0,0,0,0,0,0,0.310563393713366,0,0.046490866944115,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.16952424724273,0,0.225888143006414,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.00401062735437502,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.0929817338882301,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0265872445201401,0,0,0,-0.0202972982685035,-0.126435279074504,0,0,0,0.0929817338882301,-0.0980353512377064,-0.0211890191318326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0491973365480833,0,0,0,0.277917733122233,0.250523303330982,0,0,0,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 79: | ||
|rna_weight_ug=5.64921 | |rna_weight_ug=5.64921 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 101: | ||
|top_motifs=SNAI1..3:2.16190909817;XCPE1{core}:2.14227615437;NKX2-1,4:2.11607306753;FOXL1:2.10151695162;ZNF148:1.77095296295;GLI1..3:1.76314649366;SP1:1.7460838489;PPARG:1.70816055673;EP300:1.64424600171;TBP:1.6341154056;HIF1A:1.56468733626;PAX4:1.5302100866;FOXN1:1.46529568693;ZEB1:1.45803942097;FOXM1:1.36057699089;TEAD1:1.34043189527;HOX{A6,A7,B6,B7}:1.20242386226;TFAP2{A,C}:1.18667200167;MAZ:1.1781437344;POU1F1:1.11736419438;RORA:1.1072086865;FOXO1,3,4:1.09921797978;TP53:1.01492126963;NKX2-2,8:1.01446643488;CDC5L:1.0061692932;TBX4,5:0.962142549463;HAND1,2:0.923677014077;FOS_FOS{B,L1}_JUN{B,D}:0.890858630013;AIRE:0.865748512941;PAX8:0.805135145389;POU6F1:0.782589791336;NKX2-3_NKX2-5:0.762432062054;HBP1_HMGB_SSRP1_UBTF:0.740320312694;TLX2:0.723738775285;MYOD1:0.700179661452;BACH2:0.673277450901;RXRA_VDR{dimer}:0.613803882208;VSX1,2:0.592643134202;HMX1:0.548082083179;GCM1,2:0.534683993948;ONECUT1,2:0.519666959872;FOX{I1,J2}:0.511040434486;UFEwm:0.507979120634;TEF:0.488176825568;JUN:0.473925110087;FOX{D1,D2}:0.472515614925;HMGA1,2:0.448681392852;POU3F1..4:0.44506211634;bHLH_family:0.404602664347;FOSL2:0.401188210043;MED-1{core}:0.357856692095;ARID5B:0.351764800103;NR1H4:0.346191930447;EVI1:0.344253331028;HOXA9_MEIS1:0.336337580389;BPTF:0.331542906005;HSF1,2:0.316492871011;HOX{A4,D4}:0.315909067646;TFCP2:0.289706501195;POU2F1..3:0.285223589399;IKZF1:0.283461579551;GZF1:0.278342735942;ZBTB6:0.26072189781;ESR1:0.253970867638;ZNF238:0.245888058397;EN1,2:0.237816444045;MTF1:0.180905729421;LEF1_TCF7_TCF7L1,2:0.150321224164;ADNP_IRX_SIX_ZHX:0.14295944024;EBF1:0.14195166314;HLF:0.139419496126;ATF4:0.139197038542;ZIC1..3:0.137235939445;PITX1..3:0.135415705623;HIC1:0.123991186232;ATF6:0.0883920246071;CREB1:0.0617826882515;PAX2:0.04903451049;IRF7:0.0420306713935;XBP1:0.0240982769359;EGR1..3:0.0224255501278;TFAP2B:0.00504136422549;GTF2I:-0.0136416904806;ALX1:-0.0340580693432;ATF5_CREB3:-0.0514686575481;ZNF143:-0.0592945806612;ESRRA:-0.0600692247571;NKX3-2:-0.0616172379074;HOX{A5,B5}:-0.0671885819373;RFX1:-0.0682687400475;HNF1A:-0.0806753133898;HES1:-0.0877325540036;GATA6:-0.0987316624668;ELK1,4_GABP{A,B1}:-0.107711943968;SOX5:-0.110179249621;NFE2:-0.110514936657;PAX5:-0.133377217519;TLX1..3_NFIC{dimer}:-0.136056746249;MYBL2:-0.155023855158;PAX1,9:-0.161081677803;FOXP3:-0.163695931792;SOX17:-0.169391711108;NFATC1..3:-0.187184367186;GTF2A1,2:-0.24437557745;ZNF384:-0.248177614956;ZNF423:-0.248463334704;STAT1,3:-0.251552950408;SMAD1..7,9:-0.252625791866;RFX2..5_RFXANK_RFXAP:-0.256226844567;MTE{core}:-0.259622810585;OCT4_SOX2{dimer}:-0.265731232838;MEF2{A,B,C,D}:-0.268060798248;FOXP1:-0.310729947617;PATZ1:-0.311961092153;ALX4:-0.312497646784;MYFfamily:-0.318679420942;ZFP161:-0.336606664745;NFKB1_REL_RELA:-0.346682996873;CRX:-0.35944976067;NRF1:-0.366402062346;SREBF1,2:-0.386757379279;NFIL3:-0.393040658929;NFY{A,B,C}:-0.396920894096;STAT2,4,6:-0.42128161243;REST:-0.430795583972;FOXQ1:-0.454642959236;KLF4:-0.45794835219;NHLH1,2:-0.460068761402;MYB:-0.461514541031;FOXA2:-0.466350470028;MAFB:-0.475479130508;SPI1:-0.521777526767;GFI1:-0.522177438155;NANOG{mouse}:-0.522983727255;SRF:-0.528557858783;CEBPA,B_DDIT3:-0.537485939781;IRF1,2:-0.538986899984;T:-0.54045263588;STAT5{A,B}:-0.55307098838;RUNX1..3:-0.564278265135;RREB1:-0.569703089529;LMO2:-0.576932090786;HNF4A_NR2F1,2:-0.579483619281;ATF2:-0.599296006023;TFDP1:-0.611045239614;TFAP4:-0.614300829147;DBP:-0.62398189567;ZBTB16:-0.631580639954;MZF1:-0.648118964011;SOX{8,9,10}:-0.669538414994;AR:-0.694911199116;RBPJ:-0.704201358299;SPZ1:-0.708507984019;TGIF1:-0.742926847783;ETS1,2:-0.744199524343;NR6A1:-0.755814673849;AHR_ARNT_ARNT2:-0.770706594842;NR3C1:-0.787987543522;PBX1:-0.788362764374;SPIB:-0.793366340092;NR5A1,2:-0.795814527636;RXR{A,B,G}:-0.805193596818;NKX3-1:-0.832385953914;CUX2:-0.84273382091;YY1:-0.852061931212;BREu{core}:-0.856186869928;PAX3,7:-0.858739901962;E2F1..5:-0.902326457519;SOX2:-0.916367358305;TAL1_TCF{3,4,12}:-0.919974428225;ELF1,2,4:-0.937791710707;NKX6-1,2:-1.00258447663;FOX{F1,F2,J1}:-1.00797462171;GFI1B:-1.00956320237;DMAP1_NCOR{1,2}_SMARC:-1.02301184149;TOPORS:-1.03539773229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05452033961;NFE2L2:-1.06395185577;LHX3,4:-1.10051212123;PDX1:-1.12748846049;PAX6:-1.12828461752;NFE2L1:-1.15376169108;PRDM1:-1.22544797915;FOXD3:-1.23688755464;PRRX1,2:-1.27261876604;IKZF2:-1.30634666627;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.34768576437;CDX1,2,4:-1.45782021382;GATA4:-1.49928936419;NANOG:-1.58836487634;NFIX:-1.94706176666;POU5F1:-2.09632609962 | |top_motifs=SNAI1..3:2.16190909817;XCPE1{core}:2.14227615437;NKX2-1,4:2.11607306753;FOXL1:2.10151695162;ZNF148:1.77095296295;GLI1..3:1.76314649366;SP1:1.7460838489;PPARG:1.70816055673;EP300:1.64424600171;TBP:1.6341154056;HIF1A:1.56468733626;PAX4:1.5302100866;FOXN1:1.46529568693;ZEB1:1.45803942097;FOXM1:1.36057699089;TEAD1:1.34043189527;HOX{A6,A7,B6,B7}:1.20242386226;TFAP2{A,C}:1.18667200167;MAZ:1.1781437344;POU1F1:1.11736419438;RORA:1.1072086865;FOXO1,3,4:1.09921797978;TP53:1.01492126963;NKX2-2,8:1.01446643488;CDC5L:1.0061692932;TBX4,5:0.962142549463;HAND1,2:0.923677014077;FOS_FOS{B,L1}_JUN{B,D}:0.890858630013;AIRE:0.865748512941;PAX8:0.805135145389;POU6F1:0.782589791336;NKX2-3_NKX2-5:0.762432062054;HBP1_HMGB_SSRP1_UBTF:0.740320312694;TLX2:0.723738775285;MYOD1:0.700179661452;BACH2:0.673277450901;RXRA_VDR{dimer}:0.613803882208;VSX1,2:0.592643134202;HMX1:0.548082083179;GCM1,2:0.534683993948;ONECUT1,2:0.519666959872;FOX{I1,J2}:0.511040434486;UFEwm:0.507979120634;TEF:0.488176825568;JUN:0.473925110087;FOX{D1,D2}:0.472515614925;HMGA1,2:0.448681392852;POU3F1..4:0.44506211634;bHLH_family:0.404602664347;FOSL2:0.401188210043;MED-1{core}:0.357856692095;ARID5B:0.351764800103;NR1H4:0.346191930447;EVI1:0.344253331028;HOXA9_MEIS1:0.336337580389;BPTF:0.331542906005;HSF1,2:0.316492871011;HOX{A4,D4}:0.315909067646;TFCP2:0.289706501195;POU2F1..3:0.285223589399;IKZF1:0.283461579551;GZF1:0.278342735942;ZBTB6:0.26072189781;ESR1:0.253970867638;ZNF238:0.245888058397;EN1,2:0.237816444045;MTF1:0.180905729421;LEF1_TCF7_TCF7L1,2:0.150321224164;ADNP_IRX_SIX_ZHX:0.14295944024;EBF1:0.14195166314;HLF:0.139419496126;ATF4:0.139197038542;ZIC1..3:0.137235939445;PITX1..3:0.135415705623;HIC1:0.123991186232;ATF6:0.0883920246071;CREB1:0.0617826882515;PAX2:0.04903451049;IRF7:0.0420306713935;XBP1:0.0240982769359;EGR1..3:0.0224255501278;TFAP2B:0.00504136422549;GTF2I:-0.0136416904806;ALX1:-0.0340580693432;ATF5_CREB3:-0.0514686575481;ZNF143:-0.0592945806612;ESRRA:-0.0600692247571;NKX3-2:-0.0616172379074;HOX{A5,B5}:-0.0671885819373;RFX1:-0.0682687400475;HNF1A:-0.0806753133898;HES1:-0.0877325540036;GATA6:-0.0987316624668;ELK1,4_GABP{A,B1}:-0.107711943968;SOX5:-0.110179249621;NFE2:-0.110514936657;PAX5:-0.133377217519;TLX1..3_NFIC{dimer}:-0.136056746249;MYBL2:-0.155023855158;PAX1,9:-0.161081677803;FOXP3:-0.163695931792;SOX17:-0.169391711108;NFATC1..3:-0.187184367186;GTF2A1,2:-0.24437557745;ZNF384:-0.248177614956;ZNF423:-0.248463334704;STAT1,3:-0.251552950408;SMAD1..7,9:-0.252625791866;RFX2..5_RFXANK_RFXAP:-0.256226844567;MTE{core}:-0.259622810585;OCT4_SOX2{dimer}:-0.265731232838;MEF2{A,B,C,D}:-0.268060798248;FOXP1:-0.310729947617;PATZ1:-0.311961092153;ALX4:-0.312497646784;MYFfamily:-0.318679420942;ZFP161:-0.336606664745;NFKB1_REL_RELA:-0.346682996873;CRX:-0.35944976067;NRF1:-0.366402062346;SREBF1,2:-0.386757379279;NFIL3:-0.393040658929;NFY{A,B,C}:-0.396920894096;STAT2,4,6:-0.42128161243;REST:-0.430795583972;FOXQ1:-0.454642959236;KLF4:-0.45794835219;NHLH1,2:-0.460068761402;MYB:-0.461514541031;FOXA2:-0.466350470028;MAFB:-0.475479130508;SPI1:-0.521777526767;GFI1:-0.522177438155;NANOG{mouse}:-0.522983727255;SRF:-0.528557858783;CEBPA,B_DDIT3:-0.537485939781;IRF1,2:-0.538986899984;T:-0.54045263588;STAT5{A,B}:-0.55307098838;RUNX1..3:-0.564278265135;RREB1:-0.569703089529;LMO2:-0.576932090786;HNF4A_NR2F1,2:-0.579483619281;ATF2:-0.599296006023;TFDP1:-0.611045239614;TFAP4:-0.614300829147;DBP:-0.62398189567;ZBTB16:-0.631580639954;MZF1:-0.648118964011;SOX{8,9,10}:-0.669538414994;AR:-0.694911199116;RBPJ:-0.704201358299;SPZ1:-0.708507984019;TGIF1:-0.742926847783;ETS1,2:-0.744199524343;NR6A1:-0.755814673849;AHR_ARNT_ARNT2:-0.770706594842;NR3C1:-0.787987543522;PBX1:-0.788362764374;SPIB:-0.793366340092;NR5A1,2:-0.795814527636;RXR{A,B,G}:-0.805193596818;NKX3-1:-0.832385953914;CUX2:-0.84273382091;YY1:-0.852061931212;BREu{core}:-0.856186869928;PAX3,7:-0.858739901962;E2F1..5:-0.902326457519;SOX2:-0.916367358305;TAL1_TCF{3,4,12}:-0.919974428225;ELF1,2,4:-0.937791710707;NKX6-1,2:-1.00258447663;FOX{F1,F2,J1}:-1.00797462171;GFI1B:-1.00956320237;DMAP1_NCOR{1,2}_SMARC:-1.02301184149;TOPORS:-1.03539773229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05452033961;NFE2L2:-1.06395185577;LHX3,4:-1.10051212123;PDX1:-1.12748846049;PAX6:-1.12828461752;NFE2L1:-1.15376169108;PRDM1:-1.22544797915;FOXD3:-1.23688755464;PRRX1,2:-1.27261876604;IKZF2:-1.30634666627;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.34768576437;CDX1,2,4:-1.45782021382;GATA4:-1.49928936419;NANOG:-1.58836487634;NFIX:-1.94706176666;POU5F1:-2.09632609962 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12235-129G3;search_select_hide=table117:FF:12235-129G3 | |||
}} | }} | ||
Latest revision as of 18:35, 4 June 2020
| Name: | amniotic membrane cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12502 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12502
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12502
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.871 |
| 10 | 10 | 0.694 |
| 100 | 100 | 0.382 |
| 101 | 101 | 0.162 |
| 102 | 102 | 0.555 |
| 103 | 103 | 0.501 |
| 104 | 104 | 0.551 |
| 105 | 105 | 0.301 |
| 106 | 106 | 0.291 |
| 107 | 107 | 0.341 |
| 108 | 108 | 0.0772 |
| 109 | 109 | 0.0052 |
| 11 | 11 | 0.509 |
| 110 | 110 | 0.44 |
| 111 | 111 | 0.726 |
| 112 | 112 | 0.738 |
| 113 | 113 | 0.00165 |
| 114 | 114 | 0.784 |
| 115 | 115 | 0.624 |
| 116 | 116 | 0.274 |
| 117 | 117 | 0.29 |
| 118 | 118 | 0.00954 |
| 119 | 119 | 0.828 |
| 12 | 12 | 0.702 |
| 120 | 120 | 0.361 |
| 121 | 121 | 0.118 |
| 122 | 122 | 0.471 |
| 123 | 123 | 0.0287 |
| 124 | 124 | 0.0134 |
| 125 | 125 | 0.44 |
| 126 | 126 | 0.651 |
| 127 | 127 | 0.764 |
| 128 | 128 | 0.614 |
| 129 | 129 | 0.58 |
| 13 | 13 | 0.661 |
| 130 | 130 | 0.204 |
| 131 | 131 | 0.0337 |
| 132 | 132 | 0.227 |
| 133 | 133 | 0.0312 |
| 134 | 134 | 0.047 |
| 135 | 135 | 0.769 |
| 136 | 136 | 0.00163 |
| 137 | 137 | 0.0835 |
| 138 | 138 | 0.984 |
| 139 | 139 | 0.516 |
| 14 | 14 | 0.906 |
| 140 | 140 | 0.983 |
| 141 | 141 | 0.177 |
| 142 | 142 | 0.824 |
| 143 | 143 | 0.154 |
| 144 | 144 | 0.691 |
| 145 | 145 | 0.576 |
| 146 | 146 | 0.372 |
| 147 | 147 | 0.58 |
| 148 | 148 | 0.602 |
| 149 | 149 | 0.322 |
| 15 | 15 | 0.518 |
| 150 | 150 | 0.329 |
| 151 | 151 | 0.125 |
| 152 | 152 | 0.00658 |
| 153 | 153 | 0.889 |
| 154 | 154 | 0.643 |
| 155 | 155 | 0.0308 |
| 156 | 156 | 0.346 |
| 157 | 157 | 0.471 |
| 158 | 158 | 0.253 |
| 159 | 159 | 0.979 |
| 16 | 16 | 0.138 |
| 160 | 160 | 0.66 |
| 161 | 161 | 0.84 |
| 162 | 162 | 0.806 |
| 163 | 163 | 0.175 |
| 164 | 164 | 0.287 |
| 165 | 165 | 0.339 |
| 166 | 166 | 0.6 |
| 167 | 167 | 0.527 |
| 168 | 168 | 0.836 |
| 169 | 169 | 0.101 |
| 17 | 17 | 0.742 |
| 18 | 18 | 0.229 |
| 19 | 19 | 0.807 |
| 2 | 2 | 0.256 |
| 20 | 20 | 0.394 |
| 21 | 21 | 0.261 |
| 22 | 22 | 0.196 |
| 23 | 23 | 0.451 |
| 24 | 24 | 0.793 |
| 25 | 25 | 0.552 |
| 26 | 26 | 0.819 |
| 27 | 27 | 0.673 |
| 28 | 28 | 0.974 |
| 29 | 29 | 0.228 |
| 3 | 3 | 0.814 |
| 30 | 30 | 0.0693 |
| 31 | 31 | 0.842 |
| 32 | 32 | 0.573 |
| 33 | 33 | 0.869 |
| 34 | 34 | 0.17 |
| 35 | 35 | 0.00155 |
| 36 | 36 | 0.0744 |
| 37 | 37 | 0.527 |
| 38 | 38 | 0.732 |
| 39 | 39 | 0.368 |
| 4 | 4 | 0.61 |
| 40 | 40 | 0.558 |
| 41 | 41 | 0.457 |
| 42 | 42 | 0.752 |
| 43 | 43 | 0.688 |
| 44 | 44 | 0.811 |
| 45 | 45 | 0.0511 |
| 46 | 46 | 0.288 |
| 47 | 47 | 0.25 |
| 48 | 48 | 0.782 |
| 49 | 49 | 0.363 |
| 5 | 5 | 0.61 |
| 50 | 50 | 0.5 |
| 51 | 51 | 0.817 |
| 52 | 52 | 0.229 |
| 53 | 53 | 0.242 |
| 54 | 54 | 0.826 |
| 55 | 55 | 0.348 |
| 56 | 56 | 0.49 |
| 57 | 57 | 0.963 |
| 58 | 58 | 0.539 |
| 59 | 59 | 0.902 |
| 6 | 6 | 0.823 |
| 60 | 60 | 0.792 |
| 61 | 61 | 0.874 |
| 62 | 62 | 0.507 |
| 63 | 63 | 0.847 |
| 64 | 64 | 0.955 |
| 65 | 65 | 0.732 |
| 66 | 66 | 0.604 |
| 67 | 67 | 0.708 |
| 68 | 68 | 0.764 |
| 69 | 69 | 0.0426 |
| 7 | 7 | 0.581 |
| 70 | 70 | 0.404 |
| 71 | 71 | 0.156 |
| 72 | 72 | 0.338 |
| 73 | 73 | 0.0118 |
| 74 | 74 | 0.0297 |
| 75 | 75 | 0.309 |
| 76 | 76 | 0.694 |
| 77 | 77 | 0.51 |
| 78 | 78 | 0.409 |
| 79 | 79 | 0.589 |
| 8 | 8 | 0.419 |
| 80 | 80 | 0.25 |
| 81 | 81 | 0.423 |
| 82 | 82 | 0.633 |
| 83 | 83 | 0.539 |
| 84 | 84 | 0.314 |
| 85 | 85 | 0.133 |
| 86 | 86 | 0.516 |
| 87 | 87 | 0.674 |
| 88 | 88 | 0.629 |
| 89 | 89 | 0.418 |
| 9 | 9 | 0.732 |
| 90 | 90 | 0.664 |
| 91 | 91 | 0.813 |
| 92 | 92 | 0.36 |
| 93 | 93 | 0.891 |
| 94 | 94 | 0.141 |
| 95 | 95 | 0.644 |
| 96 | 96 | 0.786 |
| 97 | 97 | 0.225 |
| 98 | 98 | 0.644 |
| 99 | 99 | 0.903 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12502
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000010 human amniotic membrane cell- Amnion sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
