FF:11271-116H2: Difference between revisions

Latest revision as of 16:29, 3 June 2020

Name:	Hair Follicle Dermal Papilla Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12501
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	hair follicle
dev stage	28 years old adult
sex	male
age	28
cell type	hair follicle, dermal papilla cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1648
catalog number	CA602-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005918

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12501		CAGE		DRX008296		DRR009168

Accession ID Hg19

Library id		BAM		CTSS
CNhs12501		DRZ000593		DRZ001978

Accession ID Hg38

Library id		BAM		CTSS
CNhs12501		DRZ011943		DRZ013328

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005918

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10013.ACAGTG		sRNA-Seq		DRX037206		DRR041572

Accession ID Hg19

Library id		BAM		CTSS
SRhi10013.ACAGTG		DRZ007214

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.156
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.136
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.755
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.22
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.361
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.755
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.341
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.378
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.451
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0202
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.36
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.409
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.409
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12501

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.44311e-4
MA0003.1	MA0003.1	0.122
MA0004.1	MA0004.1	0.808
MA0006.1	MA0006.1	0.241
MA0007.1	MA0007.1	0.221
MA0009.1	MA0009.1	0.676
MA0014.1	MA0014.1	0.628
MA0017.1	MA0017.1	0.234
MA0018.2	MA0018.2	0.00757
MA0019.1	MA0019.1	0.493
MA0024.1	MA0024.1	3.19393e-4
MA0025.1	MA0025.1	0.126
MA0027.1	MA0027.1	0.319
MA0028.1	MA0028.1	0.0533
MA0029.1	MA0029.1	0.625
MA0030.1	MA0030.1	0.155
MA0031.1	MA0031.1	0.0678
MA0035.2	MA0035.2	0.168
MA0038.1	MA0038.1	0.489
MA0039.2	MA0039.2	0.379
MA0040.1	MA0040.1	0.799
MA0041.1	MA0041.1	0.432
MA0042.1	MA0042.1	0.7
MA0043.1	MA0043.1	2.23435e-4
MA0046.1	MA0046.1	0.426
MA0047.2	MA0047.2	0.911
MA0048.1	MA0048.1	0.794
MA0050.1	MA0050.1	3.83697e-8
MA0051.1	MA0051.1	1.84274e-6
MA0052.1	MA0052.1	0.664
MA0055.1	MA0055.1	0.864
MA0057.1	MA0057.1	0.465
MA0058.1	MA0058.1	0.637
MA0059.1	MA0059.1	0.368
MA0060.1	MA0060.1	0.22
MA0061.1	MA0061.1	0.0506
MA0062.2	MA0062.2	4.53733e-4
MA0065.2	MA0065.2	0.0264
MA0066.1	MA0066.1	0.105
MA0067.1	MA0067.1	0.174
MA0068.1	MA0068.1	0.347
MA0069.1	MA0069.1	0.513
MA0070.1	MA0070.1	0.931
MA0071.1	MA0071.1	0.769
MA0072.1	MA0072.1	0.672
MA0073.1	MA0073.1	0.466
MA0074.1	MA0074.1	0.351
MA0076.1	MA0076.1	0.0128
MA0077.1	MA0077.1	0.825
MA0078.1	MA0078.1	0.814
MA0079.2	MA0079.2	0.732
MA0080.2	MA0080.2	0.11
MA0081.1	MA0081.1	0.422
MA0083.1	MA0083.1	0.00236
MA0084.1	MA0084.1	0.951
MA0087.1	MA0087.1	0.854
MA0088.1	MA0088.1	0.12
MA0090.1	MA0090.1	0.0468
MA0091.1	MA0091.1	0.0192
MA0092.1	MA0092.1	0.0556
MA0093.1	MA0093.1	0.708
MA0099.2	MA0099.2	4.87114e-5
MA0100.1	MA0100.1	0.453
MA0101.1	MA0101.1	0.0868
MA0102.2	MA0102.2	0.603
MA0103.1	MA0103.1	0.323
MA0104.2	MA0104.2	0.498
MA0105.1	MA0105.1	0.00937
MA0106.1	MA0106.1	0.236
MA0107.1	MA0107.1	0.0356
MA0108.2	MA0108.2	9.74956e-6
MA0111.1	MA0111.1	0.555
MA0112.2	MA0112.2	4.56406e-4
MA0113.1	MA0113.1	0.0631
MA0114.1	MA0114.1	0.118
MA0115.1	MA0115.1	0.84
MA0116.1	MA0116.1	0.02
MA0117.1	MA0117.1	0.992
MA0119.1	MA0119.1	0.0775
MA0122.1	MA0122.1	0.608
MA0124.1	MA0124.1	0.739
MA0125.1	MA0125.1	0.458
MA0131.1	MA0131.1	0.109
MA0135.1	MA0135.1	0.414
MA0136.1	MA0136.1	0.0998
MA0137.2	MA0137.2	0.904
MA0138.2	MA0138.2	0.19
MA0139.1	MA0139.1	0.353
MA0140.1	MA0140.1	0.441
MA0141.1	MA0141.1	0.515
MA0142.1	MA0142.1	0.0276
MA0143.1	MA0143.1	0.532
MA0144.1	MA0144.1	0.248
MA0145.1	MA0145.1	0.176
MA0146.1	MA0146.1	0.144
MA0147.1	MA0147.1	0.606
MA0148.1	MA0148.1	0.51
MA0149.1	MA0149.1	0.0902
MA0150.1	MA0150.1	0.126
MA0152.1	MA0152.1	0.075
MA0153.1	MA0153.1	0.385
MA0154.1	MA0154.1	0.0147
MA0155.1	MA0155.1	0.136
MA0156.1	MA0156.1	0.434
MA0157.1	MA0157.1	0.792
MA0159.1	MA0159.1	0.255
MA0160.1	MA0160.1	0.578
MA0162.1	MA0162.1	0.0298
MA0163.1	MA0163.1	0.00293
MA0164.1	MA0164.1	0.801
MA0258.1	MA0258.1	0.0124
MA0259.1	MA0259.1	0.314

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12501

Novel motif	Logo	P-value
1	1	0.315
10	10	0.828
100	100	0.879
101	101	0.895
102	102	0.354
103	103	0.0962
104	104	0.365
105	105	0.559
106	106	0.00476
107	107	0.0298
108	108	0.791
109	109	0.0926
11	11	0.0802
110	110	0.205
111	111	0.699
112	112	0.133
113	113	0.359
114	114	0.115
115	115	0.436
116	116	0.0911
117	117	0.451
118	118	0.864
119	119	0.284
12	12	0.874
120	120	0.332
121	121	0.426
122	122	0.477
123	123	0.222
124	124	0.269
125	125	0.957
126	126	0.285
127	127	0.0434
128	128	0.00555
129	129	0.38
13	13	0.521
130	130	0.0774
131	131	0.697
132	132	0.82
133	133	0.548
134	134	0.137
135	135	0.0279
136	136	0.355
137	137	0.477
138	138	0.767
139	139	0.436
14	14	0.86
140	140	0.991
141	141	0.397
142	142	0.0574
143	143	0.0305
144	144	0.519
145	145	0.162
146	146	0.156
147	147	0.362
148	148	0.471
149	149	0.0357
15	15	0.48
150	150	0.173
151	151	0.582
152	152	0.0948
153	153	0.803
154	154	0.668
155	155	0.265
156	156	0.823
157	157	0.642
158	158	0.342
159	159	0.451
16	16	0.182
160	160	0.0961
161	161	0.653
162	162	0.294
163	163	0.929
164	164	0.851
165	165	0.437
166	166	0.321
167	167	0.962
168	168	0.257
169	169	0.0227
17	17	0.151
18	18	0.0795
19	19	0.0224
2	2	0.165
20	20	0.464
21	21	0.461
22	22	0.138
23	23	0.117
24	24	0.44
25	25	0.964
26	26	0.0214
27	27	0.241
28	28	0.942
29	29	0.277
3	3	0.461
30	30	0.155
31	31	0.836
32	32	5.48849e-5
33	33	0.621
34	34	0.304
35	35	0.516
36	36	0.86
37	37	0.0669
38	38	0.543
39	39	0.75
4	4	0.725
40	40	0.565
41	41	0.144
42	42	0.607
43	43	0.12
44	44	0.484
45	45	0.165
46	46	0.071
47	47	0.295
48	48	0.307
49	49	0.251
5	5	0.452
50	50	0.529
51	51	0.646
52	52	0.169
53	53	0.795
54	54	0.716
55	55	0.531
56	56	0.287
57	57	0.288
58	58	0.534
59	59	0.0362
6	6	0.666
60	60	0.0932
61	61	0.686
62	62	0.203
63	63	0.178
64	64	0.309
65	65	0.0666
66	66	0.757
67	67	0.688
68	68	0.0793
69	69	0.938
7	7	0.678
70	70	0.0527
71	71	0.112
72	72	0.347
73	73	0.0991
74	74	0.536
75	75	0.497
76	76	0.819
77	77	0.0441
78	78	0.904
79	79	0.0234
8	8	0.103
80	80	0.251
81	81	0.666
82	82	0.412
83	83	0.0972
84	84	0.533
85	85	0.0368
86	86	0.365
87	87	0.139
88	88	0.457
89	89	0.061
9	9	0.0911
90	90	0.129
91	91	0.701
92	92	0.202
93	93	0.93
94	94	0.189
95	95	0.378
96	96	0.477
97	97	0.52
98	98	0.246
99	99	0.225

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12501

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000071 human hair follicle dermal papilla cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002559 (hair follicle cell)
0000346 (hair follicle dermal papilla cell)
1000428 (stem cell of epidermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0000412 (dermal papilla)
0002067 (dermis)
0001992 (papillary layer of dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000071 (human hair follicle dermal papilla cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0002100,UBERON:0000483,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000064,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004923,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0003102,UBERON:0007376,UBERON:0000486,UBERON:0003104,UBERON:0000914,UBERON:0005085,UBERON:0005256,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0000412,UBERON:0002067,UBERON:0002329,UBERON:0000924,UBERON:0001992,UBERON:0002416,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0006601,UBERON:0006603,UBERON:0007383,UBERON:0004016,UBERON:0010083,UBERON:0005086,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00005918
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000333,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0002320,CL:0000063,CL:0002371,CL:0000221,CL:0000219,CL:0000220,CL:0000004,CL:0000134,CL:0000255,CL:0002559,CL:0000346,CL:1000428,CL:0000133
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005918
+|accession_numbers=CAGE;DRX008296;DRR009168;DRZ000593;DRZ001978;DRZ011943;DRZ013328
+|accession_numbers_RNASeq=sRNA-Seq;DRX037206;DRR041572;DRZ007214
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0000412,UBERON:0002067,UBERON:0001992,UBERON:0002416
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002559,CL:0000346,CL:1000428
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000072,FF:0000001,FF:0000071
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:119605214..119605230,-!p1@EN1!1.98!95.43!EN1;;chr7:19157248..19157268,-!p1@TWIST1!1.91!211.21!TWIST1;;chr20:55204351..55204377,+!p1@TFAP2C!1.80!78.22!TFAP2C;;chr9:132427883..132427951,+!p2@PRRX2!1.68!46.93!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.60!50.06!PRRX2;;chr3:147127142..147127168,+!p1@ZIC1!1.51!31.29!ZIC1;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.42!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!150.19!CREB3L1;;chr4:81118647..81118666,+!p1@PRDM8!1.43!34.42!PRDM8;;chr1:170633348..170633399,+!p2@PRRX1!1.36!29.73!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.33!20.34!RUNX1T1;;chr3:147127177..147127194,+!p2@ZIC1!1.30!18.77!ZIC1;;chr8:93074848..93074871,-!p3@RUNX1T1!1.26!17.21!RUNX1T1;;chr20:39317868..39317884,-!p1@MAFB!1.25!195.56!MAFB;;chr1:170633262..170633285,+!p3@PRRX1!1.24!18.77!PRRX1;;chr12:53614115..53614154,-!p1@RARG!1.22!81.35!RARG;;chr12:54778471..54778528,-!p1@ZNF385A!1.22!15.64!ZNF385A;;chr5:72744594..72744609,-!p1@FOXD1!1.20!67.27!FOXD1;;chr14:24837368..24837401,+!p1@NFATC4!1.20!34.42!NFATC4;;chr15:83953397..83953425,-!p1@BNC1!1.20!17.21!BNC1;;chr12:48298765..48298783,-!p2@VDR!1.18!29.73!VDR;;chr3:147139053..147139112,+!p5@ZIC1!1.18!14.08!ZIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.14!21.90!CREB3L1;;chr8:116673894..116673913,-!p12@TRPS1!1.13!12.52!TRPS1;;chr3:141121871..141121885,+!p13@ZBTB38!1.13!12.52!ZBTB38;;chr6:45296048..45296082,+!p1@RUNX2!1.12!14.08!RUNX2;;chr5:321810..321877,+!p1@AHRR!1.11!37.55!AHRR;;chr11:65686732..65686756,+!p2@DRAP1!1.08!46.93!DRAP1;;chr5:134369879..134369898,-!p2@PITX1!1.08!10.95!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.08!10.95!IRX2;;chrY:21906594..21906622,-!p1@KDM5D!1.08!10.95!KDM5D;;chr2:119605056..119605071,-!p10@EN1!1.08!10.95!EN1;;chr1:170632683..170632696,+!p12@PRRX1!1.08!10.95!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.07!18.77!DRAP1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.04!125.16!ZC3H12A;;chr5:92918956..92918969,+!p4@NR2F1!1.04!10.95!NR2F1;;chr8:72756637..72756664,-!p3@MSC!1.03!10.95!MSC;;chr19:13134772..13134822,+!p2@NFIX!1.02!14.08!NFIX;;chr1:170632310..170632321,+!p15@PRRX1!1.02!9.39!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.01!15.64!TCF12;;chr19:31840130..31840160,-!p2@TSHZ3!1.00!14.08!TSHZ3;;chr5:134369905..134369972,-!p1@PITX1!1.00!14.08!PITX1;;chr9:35732647..35732678,+!p2@CREB3!0.98!48.50!CREB3;;chr12:115121962..115121987,-!p1@TBX3!0.97!71.97!TBX3;;chr8:72756267..72756296,-!p4@MSC!0.97!12.52!MSC;;chr3:141121847..141121868,+!p5@ZBTB38!0.96!12.52!ZBTB38;;chr11:65687243..65687276,+!p8@DRAP1!0.95!10.95!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!0.95!7.82!CREB3L1;;chr1:170632477..170632506,+!p6@PRRX1!0.95!7.82!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.95!7.82!PRRX1;;chr16:51185172..51185197,-!p1@SALL1!0.95!7.82!SALL1;;chr2:119605253..119605264,-!p5@EN1!0.95!7.82!EN1;;chr2:177001290..177001315,+!p1@HOXD3!0.95!7.82!HOXD3;;chr3:25469815..25469866,+!p3@RARB!0.95!7.82!RARB;;chr11:615570..615721,-!p2@IRF7!0.94!15.64!IRF7;;chr3:25469724..25469773,+!p1@RARB!0.93!10.95!RARB;;chr6:10415276..10415341,-!p2@TFAP2A!0.93!9.39!TFAP2A;;chr11:65687362..65687436,+!p3@DRAP1!0.92!34.42!DRAP1;;chr7:42276787..42276815,-!p1@GLI3!0.92!20.34!GLI3;;chr3:24536253..24536328,-!p1@THRB!0.92!14.08!THRB;;chr11:65687222..65687240,+!p7@DRAP1!0.92!9.39!DRAP1;;chr6:36355513..36355578,-!p2@ETV7!0.92!9.39!ETV7;;chr3:157823517..157823562,-!p1@SHOX2!0.92!7.82!SHOX2;;chr12:48298785..48298828,-!p1@VDR!0.91!39.11!VDR;;chr2:19558373..19558392,-!p1@OSR1!0.91!20.34!OSR1;;chr7:14028488..14028516,-!p2@ETV1!0.91!7.82!ETV1;;chr8:72756667..72756736,-!p2@MSC!0.89!10.95!MSC;;chr11:65686776..65686787,+!p9@DRAP1!0.88!7.82!DRAP1;;chr8:145159846..145159889,+!p6@MAF1!0.87!9.39!MAF1;;chr5:72744562..72744573,-!p3@FOXD1!0.86!7.82!FOXD1;;chr2:119605374..119605377,-!p7@EN1!0.86!6.26!EN1;;chr2:176994919..176994931,+!p2@HOXD8!0.86!6.26!HOXD8;;chr3:141121820..141121838,+!p9@ZBTB38!0.86!6.26!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.86!6.26!RARB;;chr1:170632028..170632043,+!p20@PRRX1!0.86!6.26!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.86!6.26!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.86!6.26!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.85!143.93!AEBP1;;chr2:28616337..28616355,+!p2@FOSL2!0.85!115.77!FOSL2;;chr8:49833948..49833973,-!p2@SNAI2!0.85!40.68!SNAI2;;chr4:4861385..4861398,+!p1@MSX1!0.85!18.77!MSX1;;chr7:19157043..19157088,-!p2@TWIST1!0.84!15.64!TWIST1;;chr8:72756213..72756243,-!p5@MSC!0.84!7.82!MSC;;chr8:49833978..49833996,-!p1@SNAI2!0.83!126.72!SNAI2;;chr12:53625966..53626012,-!p2@RARG!0.82!15.64!RARG;;chr2:200323414..200323455,-!p1@SATB2!0.82!12.52!SATB2;;chr17:46622440..46622477,-!p5@HOXB2!0.82!6.26!HOXB2;;chr2:191878874..191878938,-!p1@STAT1!0.81!319.16!STAT1;;chr10:77161133..77161176,-!p3@ZNF503!0.81!12.52!ZNF503;;chr5:174151553..174151610,+!p1@MSX2!0.81!9.39!MSX2;;chr9:4300004..4300015,-!p6@GLIS3!0.81!6.26!GLIS3;;chr5:72743793..72743855,-!p4@FOXD1!0.79!6.26!FOXD1;;chr7:14028743..14028799,-!p3@ETV1!0.77!6.26!ETV1;;chr19:42636586..42636607,-!p1@POU2F2!0.76!14.08!POU2F2;;chr7:44143997..44144008,+!p3@AEBP1!0.76!6.26!AEBP1;;chr5:174151612..174151633,+!p2@MSX2!0.76!4.69!MSX2;;chr7:139762578..139762589,-!p2@PARP12!0.76!4.69!PARP12;;chr1:119530493..119530572,-!p1@TBX15!0.76!4.69!TBX15;;chr1:170632137..170632172,+!p10@PRRX1!0.76!4.69!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.76!4.69!PRRX1;;chr20:55205791..55205817,+!p3@TFAP2C!0.76!4.69!TFAP2C;;chr2:100721328..100721348,-!p4@AFF3!0.76!4.69!AFF3;;chr2:119604456..119604501,-!p2@EN1!0.76!4.69!EN1;;chr2:176987441..176987454,+!p1@HOXD9!0.76!4.69!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!0.76!4.69!HOXD8;;chr3:147111231..147111281,+!p3@ZIC1!0.76!4.69!ZIC1;;chr3:147124307..147124336,-!p2@ZIC4!0.76!4.69!ZIC4;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.69!ZFY;;chr12:115122318..115122331,-!p2@TBX3!0.76!4.69!TBX3;;chr2:239756671..239756732,+!p1@TWIST2!0.74!15.64!TWIST2;;chr10:51572339..51572376,+!p4@NCOA4!0.74!10.95!NCOA4;;chr17:46621101..46621143,-!p7@HOXB2!0.74!6.26!HOXB2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.73!348.88!TAX1BP3;;chr12:56753869..56753930,-!p1@STAT2!0.73!217.46!STAT2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.73!54.76!TAX1BP3;;chr8:72756063..72756125,-!p1@MSC!0.73!9.39!MSC;;chr2:239756739..239756755,+!p2@TWIST2!0.73!7.82!TWIST2;;chr2:192015701..192015743,-!p1@STAT4!0.73!6.26!STAT4;;chr21:47063625..47063658,+!p1@PCBP3!0.71!20.34!PCBP3;;chr22:41697497..41697515,+!p2@ZC3H7B!0.71!12.52!ZC3H7B;;chr2:200322654..200322707,-!p2@SATB2!0.71!6.26!SATB2;;chr16:54320158..54320200,-!p5@IRX3!0.71!6.26!IRX3;;chr11:46299186..46299195,+!p3@CREB3L1!0.71!4.69!CREB3L1;;chr17:1958388..1958404,+!p1@HIC1!0.69!28.16!HIC1;;chr19:926055..926068,+!p2@ARID3A!0.69!9.39!ARID3A;;chr17:46622229..46622257,-!p6@HOXB2!0.69!4.69!HOXB2;;chr2:28615716..28615733,+!p1@FOSL2!0.68!209.64!FOSL2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.52!ZHX3;;chr6:126240356..126240379,+!p7@NCOA7!0.67!4.69!NCOA7;;chr9:16870659..16870675,-!p2@BNC2!0.67!4.69!BNC2;;chr12:124873357..124873401,-!p1@NCOR2!0.66!48.50!NCOR2;;chr10:77161533..77161546,-!p2@ZNF503!0.65!15.64!ZNF503;;chr2:28616358..28616380,+!p3@FOSL2!0.64!20.34!FOSL2;;chr11:12696071..12696086,+!p3@TEAD1!0.64!4.69!TEAD1;;chr11:65687158..65687216,+!p4@DRAP1!0.63!21.90!DRAP1;;chr6:35310363..35310382,+!p3@PPARD!0.63!14.08!PPARD;;chr5:139487608..139487663,+!p3@PURA!0.63!7.82!PURA;;chr5:43067636..43067674,+!p6@ZNF131!0.63!4.69!ZNF131;;chr13:74708269..74708291,-!p7@KLF12!0.63!4.69!KLF12;;chr11:615942..615957,-!p1@IRF7!0.62!35.98!IRF7;;chr11:64764435..64764449,-!p1@BATF2!0.62!4.69!BATF2;;chr3:101546827..101546847,+!p2@NFKBIZ!0.62!4.69!NFKBIZ;;chr2:102091566..102091581,-!p1@RFX8!0.62!3.13!RFX8;;chr2:113999360..113999386,-!p4@PAX8!0.62!3.13!PAX8;;chr2:119605233..119605245,-!p8@EN1!0.62!3.13!EN1;;chr2:176987485..176987496,+!p3@HOXD9!0.62!3.13!HOXD9;;chr2:177053386..177053402,+!p1@HOXD1!0.62!3.13!HOXD1;;chr2:223163706..223163730,-!p1@PAX3!0.62!3.13!PAX3;;chr3:147114993..147115013,-!p5@ZIC4!0.62!3.13!ZIC4;;chr3:147127329..147127341,+!p7@ZIC1!0.62!3.13!ZIC1;;chr3:25470062..25470084,+!p4@RARB!0.62!3.13!RARB;;chr11:65429891..65429915,-!p7@RELA!0.62!3.13!RELA;;chr12:53625846..53625861,-!p6@RARG!0.62!3.13!RARG;;chr1:119530706..119530736,-!p3@TBX15!0.62!3.13!TBX15;;chr1:170632250..170632277,+!p7@PRRX1!0.62!3.13!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.62!3.13!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.62!3.13!RUNX3;;chr15:80843484..80843499,+!p5@ARNT2!0.62!3.13!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.62!3.13!BNC1;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.13!ZNF668;;chr18:42260840..42260860,+!p2@SETBP1!0.62!3.13!SETBP1;;chr18:52988979..52988993,-!p18@TCF4!0.62!3.13!TCF4;;chr5:2751785..2751808,-!p2@IRX2!0.62!3.13!IRX2;;chr5:3595934..3595957,+!p2@IRX1!0.62!3.13!IRX1;;chr6:100912785..100912822,-!p1@SIM1!0.62!3.13!SIM1;;chr6:36355431..36355466,-!p1@ETV7!0.62!3.13!ETV7;;chr7:150102756..150102772,+!p5@ZNF775!0.62!3.13!ZNF775;;chr7:35293685..35293718,-!p1@TBX20!0.62!3.13!TBX20;;chrX:136648279..136648295,+!p1@ZIC3!0.62!3.13!ZIC3;;chr3:114343768..114343822,-!p1@ZBTB20!0.61!15.64!ZBTB20;;chr14:73360799..73360817,-!p1@DPF3!0.61!12.52!DPF3;;chr19:56152332..56152347,+!p4@ZNF580!0.61!7.82!ZNF580;;chr1:23694697..23694756,-!p3@ZNF436!0.60!7.82!ZNF436;;chr12:80085255..80085284,-!p9@PAWR!0.60!4.69!PAWR;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.69!IRX5;;chr16:89940220..89940242,+!p3@TCF25!0.60!4.69!TCF25;;chr14:35873947..35873965,-!p1@NFKBIA!0.59!223.72!NFKBIA;;chr6:106534192..106534224,+!p1@PRDM1!0.59!9.39!PRDM1;;chr20:48807456..48807475,+!p3@CEBPB!0.59!6.26!CEBPB;;chr4:87928105..87928126,+!p13@AFF1!0.59!4.69!AFF1;;chr18:56530136..56530199,+!p3@ZNF532!0.59!4.69!ZNF532;;chr19:45504688..45504782,+!p1@RELB!0.58!20.34!RELB;;chr14:61116183..61116208,-!p1@SIX1!0.58!12.52!SIX1;;chr12:54785074..54785122,-!p2@ZNF385A!0.58!4.69!ZNF385A;;chr12:66218378..66218401,+!p6@HMGA2!0.58!4.69!HMGA2;;chr19:53496768..53496799,-!p1@ZNF702P!0.58!4.69!ZNF702P;;chr1:170632959..170632987,+!p4@PRRX1!0.58!3.13!PRRX1;;chr4:81104865..81104886,+!p6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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000346;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
+|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11271-116H2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000071;;FF:0000210
+|is_a=EFO:0002091;;FF:0000071
+|is_obsolete=
+|library_id=CNhs12501
+|library_id_phase_based=2:CNhs12501
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11271
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.ACAGTG.11271
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11271
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.ACAGTG.11271
 |name=Hair Follicle Dermal Papilla Cells, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12501,LSID916,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10013,,,
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 |rna_box=116
 |rna_catalog_number=CA602-R10a
@@ Line 56: / Line 82: @@
 |rna_tube_id=116H2
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10013.ACAGTG
 |sample_age=28
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 77: / Line 105: @@
 |sample_tissue=hair follicle
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11271-116H2;search_select_hide=table117:FF:11271-116H2
 }}

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FF:11271-116H2: Difference between revisions

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Latest revision as of 16:29, 3 June 2020

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