FFCP PHASE1:Hg19::chr2:128399756..128399791,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-50bp_to_ENST00000426981_5end | |association_with_transcript=-50bp_to_ENST00000426981_5end | ||
|cluster_id=chr2:128399756..128399791,- | |||
|coexpression_cluster_id=C141 | |||
|description=CAGE_peak_12_at_LIMS2_5end | |description=CAGE_peak_12_at_LIMS2_5end | ||
|id=chr2:128399756..128399791,- | |id=chr2:128399756..128399791,- | ||
|ontology_enrichment_celltype=CL:0000084!1.25e-09!25;CL:0000827!1.25e-09!25;CL:0000791!4.76e-08!18;CL:0000789!4.76e-08!18;CL:0002420!4.76e-08!18;CL:0002419!4.76e-08!18;CL:0000790!4.76e-08!18 | |ontology_enrichment_celltype=CL:0000084!1.25e-09!25;CL:0000827!1.25e-09!25;CL:0000791!4.76e-08!18;CL:0000789!4.76e-08!18;CL:0002420!4.76e-08!18;CL:0002419!4.76e-08!18;CL:0000790!4.76e-08!18 | ||
|ontology_enrichment_celltype_v019=CL:0002188;3.12e-10;5!CL:0000084;7.65e-08;25!CL:1000746;1.47e-07;7!CL:1000612;1.47e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002188,2.98e-10,5;CL:0000084,7.80e-08,25;CL:0000827,7.80e-08,25;CL:1000746,1.43e-07,7;CL:1000612,1.43e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0007297;4.22e-24;2!UBERON:0005754;6.05e-13;1!UBERON:0004872;1.47e-07;7!UBERON:0006965;4.17e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.57e-25;2!UBERON:0005058;5.57e-25;2!UBERON:0009113;5.57e-25;2!UBERON:0004177;5.88e-22;5!UBERON:0005057;5.88e-22;5!UBERON:0006947;2.03e-16;3!UBERON:0004054;2.03e-16;3!UBERON:0002372;6.05e-13;1!UBERON:0000029;6.05e-13;1!UBERON:0000998;6.05e-13;1!UBERON:0001301;6.05e-13;1!UBERON:0006868;6.05e-13;1!UBERON:0001961;6.05e-13;1!UBERON:0001744;6.05e-13;1!UBERON:0001042;6.05e-13;1!UBERON:0001735;6.05e-13;1!UBERON:0005904;1.47e-12;4!UBERON:0002405;7.80e-11;27!UBERON:0000074;1.47e-07;7!UBERON:0001229;1.47e-07;7!UBERON:0006562;4.17e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003887,3.67e-24,12;UBERON:0000080,5.98e-21,9;UBERON:0002120,5.98e-21,9;UBERON:0004875,5.98e-21,9;UBERON:0005721,5.98e-21,9;UBERON:0005754,5.98e-21,9;UBERON:0007297,5.98e-21,9;UBERON:0004876,3.34e-17,11;UBERON:0006947,1.49e-16,3;UBERON:0004054,1.49e-16,3;UBERON:0004177,6.79e-16,7;UBERON:0005057,6.79e-16,7;UBERON:0005103,9.76e-14,8;UBERON:0000083,9.76e-14,8;UBERON:0009201,9.76e-14,8;UBERON:0006553,9.76e-14,8;UBERON:0003074,9.76e-14,8;UBERON:0003060,9.76e-14,8;UBERON:0000029,3.33e-13,1;UBERON:0001301,3.76e-13,1;UBERON:0002370,5.39e-13,4;UBERON:0005058,5.39e-13,4;UBERON:0009113,5.39e-13,4;UBERON:0003295,5.39e-13,4;UBERON:0005562,5.39e-13,4;UBERON:0000998,6.06e-13,1;UBERON:0006868,6.06e-13,1;UBERON:0002372,8.64e-13,1;UBERON:0001961,8.64e-13,1;UBERON:0001744,8.64e-13,1;UBERON:0001735,8.64e-13,1;UBERON:0005904,1.16e-12,4;UBERON:0001042,3.04e-11,10;UBERON:0009145,3.04e-11,10;UBERON:0006562,2.85e-10,11;UBERON:0000058,4.52e-10,19;UBERON:0003351,5.79e-09,6;UBERON:0010532,1.43e-07,7;UBERON:0000074,1.43e-07,7;UBERON:0001229,1.43e-07,7;UBERON:0001230,1.43e-07,7;UBERON:0003220,1.43e-07,7;UBERON:0005749,1.43e-07,7;UBERON:0004199,1.43e-07,7;UBERON:0004209,1.43e-07,7;UBERON:0004198,1.43e-07,7;UBERON:0002113,2.06e-07,26;UBERON:0003918,2.06e-07,26;UBERON:0011143,2.06e-07,26;UBERON:0005095,2.06e-07,26;UBERON:0007687,2.06e-07,26;UBERON:0006555,3.89e-07,16;UBERON:0004819,3.89e-07,16;UBERON:0003064,6.79e-07,28 | |||
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| ||
|short_description=p12@LIMS2 | |short_description=p12@LIMS2 | ||
}} | }} |
Latest revision as of 20:58, 16 September 2015
Short description: | p12@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_LIMS2_5end |
Coexpression cluster: | C141_Hodgkin_acute_thymus_chronic_vein_CD4_B |
Association with transcript: | -50bp_to_ENST00000426981_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 2.98e-10 | 5 |
T cell | 7.80e-08 | 25 |
pro-T cell | 7.80e-08 | 25 |
glomerular cell | 1.43e-07 | 7 |
kidney corpuscule cell | 1.43e-07 | 7 |