FF:12238-129G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004697 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008540;DRR009412;DRZ000837;DRZ002222;DRZ012187;DRZ013572 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000476,UBERON:0000478,UBERON:0000158,UBERON:0003124,UBERON:0000920 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002541 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000038 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12238-129G6 | |id=FF:12238-129G6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000038 | ||
|is_obsolete= | |||
|library_id=CNhs12504 | |||
|library_id_phase_based=2:CNhs12504 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12238 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12238 | |||
|name=chorionic membrane cells, donor1 | |name=chorionic membrane cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12504,LSID918,release012,COMPLETED | |profile_hcage=CNhs12504,LSID918,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.254803397565875,0,0.311107612514742,0,0,0.0539964823133695,0.291591597755179,0.370850584453314,-0.0436944004278475,0,0,0,0.357173142898183,0,0,0,0,0,0,0.120245177400006,0,0,0.829537346603981,0,0.267191755018263,0,0.060122588700003,0,-0.0979578962680575,0,0.060122588700003,0.281181742857658,0,0,0,0,0,0,0,0,0,0,0,0,0.423481717590172,0,0.214314512399756,0,0,0,0,0,0,0.0359075675871686,0,0,0,0,0,0,0,0.0232528161574007,0,0,0.0229015501869089,0,0,0,0,0,0,0,0,0.291591597755179,0,0,0,0,0.214314512399756,0,0,0,-0.0353969989237904,0,0.120245177400006,0,0,0,0,0.0563877071988821,0,0,0,0.0930312703704892,-0.0326108312467772,0,0,0.060122588700003,0,-0.0980353512377064,-0.0783546121008925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135871698323596,0,0,0,0.449748774552441,0.507553312951655,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0.120245177400006,0,0,0,0,0,0,0,-0.126933697885559,0,-0.259771706352253,0.366091652608278,0,0.120245177400006,-0.25999924200969,0,0,0,0,0,0,0,0,0,-0.00787468955255882,0,0.069832625810691,0.060122588700003,0,0,0.120245177400006,0.248566473934413,0.631846413345686,0,-0.067100804949632,0.0519009163226377,0,0,0,0,0.0155031583146449,0,0.093435028606015,-0.0827201683234173,0.0699800096523717,0.141364828449007,0.0645326806188239,0,0,0,-0.343858568616606,-0.0973677223935808,0,0,-0.0146225955519961,-0.0741923623607815,0,0,0.231170643477849,0,0.183741478745013,-0.0604397418968705,0,-0.0583315879529787,0,0,0,0,0,0,0,0,0,0,0,1.07205666375685,-0.0353969989237904,0,0,0,0,0.070115447844368,0,0.009652140701807,0.364384761429704,0.0634023193396616,-0.0730842989341245,-0.41458838551505,0.0173733376700526,0.207217068121837,-0.0335065879077687,0.0987868663620956,-0.0292057419631558,-0.147401849371139,0.224156613086673,0.162176711395713,-0.0630104982260974,-0.276665833982262,0,0.0563877071988821,0.0631237648062594,0.246133887956614,0.385546265724342,0,0,0,0.811026269358369,0,-0.0783819975303253,0.13210051055271,0.182901259156467,0.0273309047858855,0.115704651991195,0.207370497115,-0.0438284762227479,-0.0395325284566706,-0.337191275496589,-0.0362358218408113,-0.21450315858544,0.120245177400006,0.357173142898183,0,0.0284777247568433,0.0428779857763967,-0.324234575423501,0,-0.0698391291744604,0.145970251322387,0,-0.370266189896575,-0.0867386984910996,0,0,-0.164638898234892,0,0.214314512399756,-0.131120613340295,0,0,0.0776234496516983,0.198178774356104,0.0587360361996337,0,0.0275187923238091,0,0.0297546516618725,0,0.217773061674073,0.0121437507889501,0,-0.17238862719623,0,0.162876998246091,-0.232171284455998,0.138712414939949,-0.0652216624935544,1.34916651033458,0.190539257223576,0.376732910612414,0.0156360466861794,0.307415347615429,0.0188805628673671,0.421479962656462,0,0.165984809773154,-0.465183619221769,0.0490931824888109,-0.328726506663697,0,0.0335597590623495,0,0.189552556091992,0,-0.19619761738295,-0.183260608575057,-0.224974862180931,-0.260528348023407,0,-0.015799585208337,0.515930028933109,0.143297927902228,0.12038939207204,-0.0133821853966342,0.214314512399756,-0.0301219059346335,0.0646087027330486,0.227664030699729,0.0068063421983945,0,0.0387099344940625,0,0,-0.0240446187829325,-0.235476037764389,0,-0.027551594315861,-0.0995961190816462,-0.0537419497091917,0.00427410396507182,0,0,0.808139144447179,0,0.921011190999307,0.973902782941173,0,0.266652369478839,-0.13308116408675,0,0.599570257183019,0,0,0.179645376933007,0,-0.0954734355492385,0,0,-0.035566784199068,0.00361706440987308,0,0,0.214314512399756,0,0,0,0,0,0.0503217499732755,0,0,0.033290725506415,-0.234588152816442,0.214314512399756,-0.210713581068839,0,0.120245177400006,0,0,0.120245177400006,0,0,0.120245177400006,0.338191866295991,-0.0880072385122175,0.168574182078758,0,0,0,0,0.293883392578275,-0.0829913846947179,0.291591597755179,-0.0116175290976258,0.214314512399756,0.14579579887759,0,0,0.0341041876107945,0,0,0.060122588700003,0,-0.057730457053664,0.311153999277508,0,0,0,-0.156709224201785,0,0,0,0,0.0439958773113764,0,0,0,0,0,0.0386632978531644,0,-0.411690983889554,-0.42223587846834,0.716791903957861,0,0,-0.0470326193901319,0,0,0.141189469286555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290143342959763,-0.0922240566585104,0.540700772250888,0,0,0,0,0,0,0.0360165656210999,0.0755440411448927,0,0,0,0,0,0.291591597755179,0,0,-0.471425939663242,0,0,0,0,0,0.0232528161574007,0,0.120245177400006,0,0.50960679513175,-0.207633978255701,0,0,0.310462210135632,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00307390863544187,0.370850584453314,0,0,0,0,0,0.291591597755179,0,0.722204832592041,0,0.120245177400006,0,0,1.56056493926578,0.622215225029484,0,0,0.186795212966022,0,0.0539964823133695,0,0,0.120245177400006,0,0,0,0,0,0.120245177400006,0,0,0,0,0,0,0,0,0,0,0,0,0.51320514293434,0.0161379852246505,-0.0236550061733262,0.120245177400006,0,0,0.0784792598817,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0361033825900003,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.510244967956984,0,0,0,0,0,0,-0.0557315484106517,0.486061881753418,-0.115516002145093,0,0,0,-0.054385572482455,0,0,0.0551713548413911,0,0.224814210336277,0,0,0,0,0,0,0,0,0.120245177400006,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33073986333928,0,0,0,0,0,0,0,0,0,0.829537346603981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120245177400006,0,0,0,0,0,0,0,0,0,0.120245177400006,0,0.060122588700003,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21157312948654,0,0,0,0.0785053680981348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120245177400006,0,0,0,0,0,0,0,0.120245177400006,0,0,0,0,0,0,0,0,0,0,0,0.423361225933324,0,0,0,0,0,0,0,0,0,0,0.0340639578692285,0,0,0.0720231021609516,0,0.129937880169729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.136365709879192,0,0,0,0,-0.0476371106609188,0,0.060122588700003,0,0,0,0,0,0.0179590111688076,0,0,0.214314512399756,0,0,0,0,0,0,0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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=8.24094 | |rna_weight_ug=8.24094 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.30095954557491e-228!GO:0005737;cytoplasm;9.17105021130697e-170!GO:0043226;organelle;7.55585412051845e-134!GO:0043229;intracellular organelle;1.77958063966147e-133!GO:0043231;intracellular membrane-bound organelle;3.41072866107798e-131!GO:0043227;membrane-bound organelle;4.33243408264432e-131!GO:0044444;cytoplasmic part;1.28968846296098e-114!GO:0044422;organelle part;5.00565042872223e-96!GO:0044446;intracellular organelle part;1.51844570178902e-94!GO:0005515;protein binding;2.20609991288509e-94!GO:0032991;macromolecular complex;1.64783210274941e-68!GO:0044238;primary metabolic process;1.38851402330441e-64!GO:0043170;macromolecule metabolic process;1.44122882876092e-62!GO:0044237;cellular metabolic process;1.47674292764293e-61!GO:0030529;ribonucleoprotein complex;2.69080988517451e-60!GO:0019538;protein metabolic process;5.59906219202706e-53!GO:0003723;RNA binding;8.41504902074287e-53!GO:0043233;organelle lumen;4.09118874758312e-48!GO:0031974;membrane-enclosed lumen;4.09118874758312e-48!GO:0044267;cellular protein metabolic process;2.23243945078619e-45!GO:0044260;cellular macromolecule metabolic process;2.23243945078619e-45!GO:0031090;organelle membrane;3.54037094700724e-45!GO:0015031;protein transport;1.39608498538775e-43!GO:0033036;macromolecule localization;3.09276419431496e-43!GO:0044428;nuclear part;6.2268051443412e-43!GO:0006412;translation;2.87539166349851e-42!GO:0005739;mitochondrion;4.12771848817406e-42!GO:0016043;cellular component organization and biogenesis;1.06420705531844e-41!GO:0045184;establishment of protein localization;1.35716877864439e-41!GO:0005634;nucleus;2.15486547200077e-41!GO:0008104;protein localization;6.12228928911967e-41!GO:0005840;ribosome;4.80800802189628e-38!GO:0043234;protein complex;4.33358368539984e-35!GO:0003735;structural constituent of ribosome;1.04199071968266e-33!GO:0009059;macromolecule biosynthetic process;8.63253032015389e-33!GO:0005829;cytosol;1.06606860450571e-32!GO:0044429;mitochondrial part;1.83657067332369e-30!GO:0033279;ribosomal subunit;1.98144313859498e-30!GO:0065003;macromolecular complex assembly;3.03464095354063e-30!GO:0009058;biosynthetic process;8.09189816562468e-30!GO:0046907;intracellular transport;8.78622736660172e-30!GO:0006396;RNA processing;1.01928341274441e-29!GO:0043283;biopolymer metabolic process;3.01254816923423e-29!GO:0031967;organelle envelope;4.5738626248275e-29!GO:0031981;nuclear lumen;7.11476344713858e-29!GO:0031975;envelope;1.0132573825608e-28!GO:0022607;cellular component assembly;2.23173178387779e-28!GO:0044249;cellular biosynthetic process;2.63318902269728e-28!GO:0006886;intracellular protein transport;4.35204755281946e-28!GO:0016071;mRNA metabolic process;1.01604999003455e-27!GO:0010467;gene expression;3.18124752822301e-26!GO:0008380;RNA splicing;5.07613216887023e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.96048814362955e-25!GO:0006397;mRNA processing;9.66073918842703e-24!GO:0044445;cytosolic part;8.39831062941255e-23!GO:0005740;mitochondrial envelope;8.55853946838466e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.25670915894872e-21!GO:0031966;mitochondrial membrane;8.65913875088593e-21!GO:0005783;endoplasmic reticulum;3.20704542233393e-20!GO:0012505;endomembrane system;6.1537384446249e-20!GO:0006996;organelle organization and biogenesis;2.2573813757651e-19!GO:0051641;cellular localization;2.33128018571172e-19!GO:0051649;establishment of cellular localization;3.75690460120692e-19!GO:0005681;spliceosome;6.76690815331661e-19!GO:0019866;organelle inner membrane;9.88021021697539e-19!GO:0005794;Golgi apparatus;1.16544533567962e-18!GO:0008134;transcription factor binding;1.26850797090189e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.6461397641333e-18!GO:0005654;nucleoplasm;4.25004590173106e-18!GO:0043228;non-membrane-bound organelle;5.58545942440973e-18!GO:0043232;intracellular non-membrane-bound organelle;5.58545942440973e-18!GO:0005743;mitochondrial inner membrane;6.90074681331014e-18!GO:0006119;oxidative phosphorylation;1.23462273259576e-17!GO:0012501;programmed cell death;1.57406530543823e-17!GO:0006915;apoptosis;2.45932609093012e-17!GO:0048770;pigment granule;5.08596848036879e-17!GO:0042470;melanosome;5.08596848036879e-17!GO:0015935;small ribosomal subunit;6.22252901189993e-17!GO:0022618;protein-RNA complex assembly;1.96055425522132e-16!GO:0008219;cell death;2.42201273469191e-16!GO:0016265;death;2.42201273469191e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.48032264604818e-16!GO:0006457;protein folding;3.36834659409325e-16!GO:0044432;endoplasmic reticulum part;4.7797339762527e-16!GO:0019941;modification-dependent protein catabolic process;5.14030405226027e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.14030405226027e-16!GO:0044257;cellular protein catabolic process;6.9693045065213e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.26738702433479e-15!GO:0044455;mitochondrial membrane part;1.86220541161547e-15!GO:0016192;vesicle-mediated transport;3.06256010824999e-15!GO:0044451;nucleoplasm part;4.0312840617613e-15!GO:0044265;cellular macromolecule catabolic process;4.36569005628806e-15!GO:0043285;biopolymer catabolic process;7.77034718315735e-15!GO:0015934;large ribosomal subunit;1.38479912283131e-14!GO:0006512;ubiquitin cycle;1.77925320460173e-14!GO:0030163;protein catabolic process;2.05042647277883e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.44537187553363e-14!GO:0048523;negative regulation of cellular process;6.58126931564628e-14!GO:0043412;biopolymer modification;2.28220774958593e-13!GO:0009057;macromolecule catabolic process;3.82877170443093e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.868162832731e-13!GO:0016462;pyrophosphatase activity;5.21706613399539e-13!GO:0006605;protein targeting;5.87652387238167e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.37111404253548e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;9.02468723280857e-13!GO:0006464;protein modification process;1.22358141621222e-12!GO:0048193;Golgi vesicle transport;1.72802286754427e-12!GO:0005746;mitochondrial respiratory chain;2.12416809124691e-12!GO:0016874;ligase activity;4.2720052888356e-12!GO:0017111;nucleoside-triphosphatase activity;4.45669152216546e-12!GO:0048519;negative regulation of biological process;7.84030070857795e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.22822536561209e-11!GO:0051082;unfolded protein binding;1.39395415901122e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.41808214219415e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.51461763088372e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.87164814304042e-11!GO:0003954;NADH dehydrogenase activity;1.87164814304042e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.87164814304042e-11!GO:0005789;endoplasmic reticulum membrane;2.15358177876707e-11!GO:0005730;nucleolus;2.29035776888066e-11!GO:0006461;protein complex assembly;2.60288296582965e-11!GO:0008135;translation factor activity, nucleic acid binding;4.84240168580021e-11!GO:0043687;post-translational protein modification;6.99223214126613e-11!GO:0006413;translational initiation;7.13089626591971e-11!GO:0042981;regulation of apoptosis;7.84060927605847e-11!GO:0005793;ER-Golgi intermediate compartment;9.2885272725924e-11!GO:0005773;vacuole;1.46313471778331e-10!GO:0050794;regulation of cellular process;1.53208610510831e-10!GO:0000166;nucleotide binding;1.53436573103296e-10!GO:0043067;regulation of programmed cell death;1.57144510545015e-10!GO:0003676;nucleic acid binding;1.59739716562003e-10!GO:0031980;mitochondrial lumen;1.95449897438351e-10!GO:0005759;mitochondrial matrix;1.95449897438351e-10!GO:0005768;endosome;2.12469285805378e-10!GO:0003712;transcription cofactor activity;2.26826983621489e-10!GO:0044248;cellular catabolic process;2.54829458944939e-10!GO:0006446;regulation of translational initiation;2.77550999238966e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.9470742811064e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.22992979951963e-10!GO:0051246;regulation of protein metabolic process;3.59841579919519e-10!GO:0006916;anti-apoptosis;3.74473836715449e-10!GO:0043069;negative regulation of programmed cell death;4.4393863531461e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.45307369506786e-10!GO:0008565;protein transporter activity;4.74600924505123e-10!GO:0043066;negative regulation of apoptosis;5.44334048597443e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.44334048597443e-10!GO:0000375;RNA splicing, via transesterification reactions;5.44334048597443e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.44334048597443e-10!GO:0016604;nuclear body;6.58790687825857e-10!GO:0016070;RNA metabolic process;7.24811752071369e-10!GO:0006259;DNA metabolic process;7.63838927578922e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.05535494254883e-09!GO:0042773;ATP synthesis coupled electron transport;1.05535494254883e-09!GO:0030964;NADH dehydrogenase complex (quinone);1.05579894006114e-09!GO:0045271;respiratory chain complex I;1.05579894006114e-09!GO:0005747;mitochondrial respiratory chain complex I;1.05579894006114e-09!GO:0008639;small protein conjugating enzyme activity;1.09863229422856e-09!GO:0006366;transcription from RNA polymerase II promoter;1.30523452987181e-09!GO:0003743;translation initiation factor activity;1.47887966374722e-09!GO:0004842;ubiquitin-protein ligase activity;1.59093932206786e-09!GO:0000323;lytic vacuole;2.85321173853061e-09!GO:0005764;lysosome;2.85321173853061e-09!GO:0019787;small conjugating protein ligase activity;2.85321173853061e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.98836871895628e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.57208118081495e-09!GO:0007243;protein kinase cascade;3.72851788547307e-09!GO:0016607;nuclear speck;5.84833712306997e-09!GO:0005761;mitochondrial ribosome;6.41890683229466e-09!GO:0000313;organellar ribosome;6.41890683229466e-09!GO:0006913;nucleocytoplasmic transport;8.4388316261744e-09!GO:0051186;cofactor metabolic process;8.48136316975405e-09!GO:0050789;regulation of biological process;1.44467699258593e-08!GO:0007264;small GTPase mediated signal transduction;1.46096852278603e-08!GO:0051169;nuclear transport;1.56224154720142e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.61083103410242e-08!GO:0007049;cell cycle;2.16317404252744e-08!GO:0048475;coated membrane;2.82138155612327e-08!GO:0030117;membrane coat;2.82138155612327e-08!GO:0005635;nuclear envelope;4.15671954630203e-08!GO:0032553;ribonucleotide binding;4.96120383567522e-08!GO:0032555;purine ribonucleotide binding;4.96120383567522e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.20597464175899e-08!GO:0003924;GTPase activity;5.27581134458585e-08!GO:0044431;Golgi apparatus part;7.71108378862742e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.16013550372805e-07!GO:0030120;vesicle coat;1.43176126087223e-07!GO:0030662;coated vesicle membrane;1.43176126087223e-07!GO:0017038;protein import;1.52604323633237e-07!GO:0006732;coenzyme metabolic process;2.24591239678862e-07!GO:0006793;phosphorus metabolic process;2.36415193464079e-07!GO:0006796;phosphate metabolic process;2.36415193464079e-07!GO:0009055;electron carrier activity;2.36415193464079e-07!GO:0015986;ATP synthesis coupled proton transport;2.63594132584961e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.63594132584961e-07!GO:0031988;membrane-bound vesicle;2.78931320867016e-07!GO:0031982;vesicle;3.41102047874843e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.66281980500383e-07!GO:0031324;negative regulation of cellular metabolic process;4.33034943480918e-07!GO:0048522;positive regulation of cellular process;4.45549181140921e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;5.45023267068182e-07!GO:0031410;cytoplasmic vesicle;6.20674260232763e-07!GO:0016881;acid-amino acid ligase activity;6.40573427149338e-07!GO:0017076;purine nucleotide binding;6.95113671623855e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.51427865836882e-07!GO:0016564;transcription repressor activity;9.16064595833178e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.29429031675525e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.29429031675525e-07!GO:0005770;late endosome;1.26355074706262e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.29201014400258e-06!GO:0005525;GTP binding;1.30973196570167e-06!GO:0005788;endoplasmic reticulum lumen;1.41554620405592e-06!GO:0006323;DNA packaging;1.52836701646994e-06!GO:0042254;ribosome biogenesis and assembly;1.54582744281254e-06!GO:0031965;nuclear membrane;1.66161988414842e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.79089732501754e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.79089732501754e-06!GO:0000074;regulation of progression through cell cycle;2.31820945355585e-06!GO:0051726;regulation of cell cycle;2.50312367449936e-06!GO:0009259;ribonucleotide metabolic process;2.5754486822202e-06!GO:0009056;catabolic process;2.66408726622766e-06!GO:0006164;purine nucleotide biosynthetic process;2.81185373883619e-06!GO:0003714;transcription corepressor activity;2.81769081438312e-06!GO:0008361;regulation of cell size;2.8936884337603e-06!GO:0048518;positive regulation of biological process;2.89825559238159e-06!GO:0019899;enzyme binding;3.00313593886117e-06!GO:0031252;leading edge;3.04086138258112e-06!GO:0016310;phosphorylation;3.15392268176574e-06!GO:0019829;cation-transporting ATPase activity;3.22459845942918e-06!GO:0009260;ribonucleotide biosynthetic process;3.40818403187232e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.60740630258832e-06!GO:0009152;purine ribonucleotide biosynthetic process;3.61966751650825e-06!GO:0007242;intracellular signaling cascade;3.96803328474645e-06!GO:0006163;purine nucleotide metabolic process;4.60545763242112e-06!GO:0032446;protein modification by small protein conjugation;4.60545763242112e-06!GO:0009892;negative regulation of metabolic process;5.10671663358215e-06!GO:0016049;cell growth;5.26654045958534e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.50015075349044e-06!GO:0015078;hydrogen ion transmembrane transporter activity;5.68544975847517e-06!GO:0009141;nucleoside triphosphate metabolic process;5.69550250838886e-06!GO:0009150;purine ribonucleotide metabolic process;6.41146378262835e-06!GO:0051789;response to protein stimulus;6.61791761749091e-06!GO:0006986;response to unfolded protein;6.61791761749091e-06!GO:0006754;ATP biosynthetic process;6.61791761749091e-06!GO:0006753;nucleoside phosphate metabolic process;6.61791761749091e-06!GO:0000139;Golgi membrane;6.86821328658078e-06!GO:0016567;protein ubiquitination;6.92239765178867e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.6712436610228e-06!GO:0006950;response to stress;7.81308611729638e-06!GO:0051170;nuclear import;9.94182446063976e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.94182446063976e-06!GO:0009144;purine nucleoside triphosphate metabolic process;9.94182446063976e-06!GO:0009060;aerobic respiration;1.08278675124855e-05!GO:0044440;endosomal part;1.08278675124855e-05!GO:0010008;endosome membrane;1.08278675124855e-05!GO:0016044;membrane organization and biogenesis;1.09890821676481e-05!GO:0065007;biological regulation;1.11264575981477e-05!GO:0044453;nuclear membrane part;1.19012989993764e-05!GO:0004386;helicase activity;1.25695945366852e-05!GO:0032561;guanyl ribonucleotide binding;1.46764997117518e-05!GO:0019001;guanyl nucleotide binding;1.46764997117518e-05!GO:0007005;mitochondrion organization and biogenesis;1.47156650173729e-05!GO:0065004;protein-DNA complex assembly;1.56824439542601e-05!GO:0006606;protein import into nucleus;1.86541244846663e-05!GO:0048468;cell development;1.90696170718195e-05!GO:0009967;positive regulation of signal transduction;1.96694172044389e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.9747671231205e-05!GO:0043623;cellular protein complex assembly;2.09389250755407e-05!GO:0006613;cotranslational protein targeting to membrane;2.30723664969145e-05!GO:0003713;transcription coactivator activity;2.5441036875698e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.5441036875698e-05!GO:0006333;chromatin assembly or disassembly;2.73242187457497e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.73306909302298e-05!GO:0065002;intracellular protein transport across a membrane;3.04910990700958e-05!GO:0004298;threonine endopeptidase activity;3.09415397115499e-05!GO:0001558;regulation of cell growth;3.14785345257615e-05!GO:0045333;cellular respiration;3.37302415161988e-05!GO:0022402;cell cycle process;3.45435745658145e-05!GO:0016481;negative regulation of transcription;3.45435745658145e-05!GO:0045786;negative regulation of progression through cell cycle;3.68990978627781e-05!GO:0030029;actin filament-based process;4.22303594276253e-05!GO:0065009;regulation of a molecular function;4.27619670422182e-05!GO:0050657;nucleic acid transport;4.2846525437433e-05!GO:0051236;establishment of RNA localization;4.2846525437433e-05!GO:0050658;RNA transport;4.2846525437433e-05!GO:0016563;transcription activator activity;4.34977611114056e-05!GO:0009966;regulation of signal transduction;4.44828714482529e-05!GO:0005524;ATP binding;4.44828714482529e-05!GO:0005643;nuclear pore;4.619668001776e-05!GO:0000245;spliceosome assembly;4.90900432288753e-05!GO:0046034;ATP metabolic process;5.09892731133552e-05!GO:0006403;RNA localization;5.33225637835382e-05!GO:0042623;ATPase activity, coupled;5.49198884371405e-05!GO:0005798;Golgi-associated vesicle;5.81026618025961e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.12183297585233e-05!GO:0016887;ATPase activity;6.33577264511844e-05!GO:0007265;Ras protein signal transduction;6.70665367720402e-05!GO:0045259;proton-transporting ATP synthase complex;6.75755463698159e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.94966302007478e-05!GO:0006417;regulation of translation;7.05506136393104e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.51213749298768e-05!GO:0030867;rough endoplasmic reticulum membrane;7.66142679447502e-05!GO:0008286;insulin receptor signaling pathway;8.10448322726535e-05!GO:0003724;RNA helicase activity;8.52975790984684e-05!GO:0032559;adenyl ribonucleotide binding;8.62924084150604e-05!GO:0000785;chromatin;9.77849857814063e-05!GO:0006752;group transfer coenzyme metabolic process;0.000105958885410341!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000106937704890539!GO:0004812;aminoacyl-tRNA ligase activity;0.000106937704890539!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000106937704890539!GO:0008026;ATP-dependent helicase activity;0.000112532062131337!GO:0033116;ER-Golgi intermediate compartment membrane;0.000112831849167683!GO:0006099;tricarboxylic acid cycle;0.00011455272508903!GO:0046356;acetyl-CoA catabolic process;0.00011455272508903!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000130136151284535!GO:0051276;chromosome organization and biogenesis;0.000141387961604657!GO:0043038;amino acid activation;0.000164240270915197!GO:0006418;tRNA aminoacylation for protein translation;0.000164240270915197!GO:0043039;tRNA aminoacylation;0.000164240270915197!GO:0008092;cytoskeletal protein binding;0.000166951454729628!GO:0016859;cis-trans isomerase activity;0.00016948219938372!GO:0042802;identical protein binding;0.000201640797262575!GO:0000151;ubiquitin ligase complex;0.000203876157343369!GO:0016787;hydrolase activity;0.000206849167454068!GO:0005741;mitochondrial outer membrane;0.000216936616947962!GO:0030133;transport vesicle;0.000226606234570379!GO:0051188;cofactor biosynthetic process;0.000235407689904376!GO:0006084;acetyl-CoA metabolic process;0.00027272608135587!GO:0016568;chromatin modification;0.000275398787840918!GO:0019843;rRNA binding;0.000280730232455345!GO:0016853;isomerase activity;0.000291314039254025!GO:0016197;endosome transport;0.000309709886987196!GO:0030057;desmosome;0.000344619401413029!GO:0051427;hormone receptor binding;0.000353888093366256!GO:0006974;response to DNA damage stimulus;0.000353888093366256!GO:0005769;early endosome;0.000363255807693736!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000375581606363054!GO:0031968;organelle outer membrane;0.000390579108521234!GO:0030118;clathrin coat;0.000401835450288937!GO:0006399;tRNA metabolic process;0.000407075946238812!GO:0019867;outer membrane;0.000505719989539902!GO:0006612;protein targeting to membrane;0.000509306667189357!GO:0006334;nucleosome assembly;0.000518583622626719!GO:0008250;oligosaccharyl transferase complex;0.000526491111087799!GO:0005791;rough endoplasmic reticulum;0.000531011441668944!GO:0045892;negative regulation of transcription, DNA-dependent;0.000536684033762474!GO:0004576;oligosaccharyl transferase activity;0.00058518128331321!GO:0006364;rRNA processing;0.00059226736700189!GO:0005667;transcription factor complex;0.000598996075641351!GO:0035257;nuclear hormone receptor binding;0.000624401463837349!GO:0051028;mRNA transport;0.000659082580379193!GO:0005885;Arp2/3 protein complex;0.000671991959235596!GO:0001726;ruffle;0.00067442885255782!GO:0016072;rRNA metabolic process;0.0006970844342111!GO:0045454;cell redox homeostasis;0.000704731697703231!GO:0008654;phospholipid biosynthetic process;0.000776006855053713!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000776006855053713!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000782116512353396!GO:0046930;pore complex;0.000788205082584885!GO:0030554;adenyl nucleotide binding;0.000790681300761539!GO:0048471;perinuclear region of cytoplasm;0.000822828109050167!GO:0005048;signal sequence binding;0.000837318715846532!GO:0005774;vacuolar membrane;0.000841714494294384!GO:0008186;RNA-dependent ATPase activity;0.000851358860209323!GO:0009109;coenzyme catabolic process;0.000858393923334592!GO:0005905;coated pit;0.000880119869896464!GO:0031497;chromatin assembly;0.000881403313791301!GO:0003697;single-stranded DNA binding;0.000899549006021005!GO:0043566;structure-specific DNA binding;0.000915261416826454!GO:0051187;cofactor catabolic process;0.000980747029612963!GO:0031326;regulation of cellular biosynthetic process;0.000981023292248841!GO:0050790;regulation of catalytic activity;0.00107982100124587!GO:0043021;ribonucleoprotein binding;0.001144738511043!GO:0051920;peroxiredoxin activity;0.00123075988177631!GO:0009889;regulation of biosynthetic process;0.00129326710655125!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00136119961035281!GO:0043065;positive regulation of apoptosis;0.00148908006282149!GO:0005083;small GTPase regulator activity;0.00163648935645495!GO:0009719;response to endogenous stimulus;0.00171020946747898!GO:0006891;intra-Golgi vesicle-mediated transport;0.00171020946747898!GO:0018196;peptidyl-asparagine modification;0.00175324335701474!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00175324335701474!GO:0003729;mRNA binding;0.00175968321227677!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00179131669306428!GO:0016740;transferase activity;0.00186974093299854!GO:0040008;regulation of growth;0.00191963044859287!GO:0030176;integral to endoplasmic reticulum membrane;0.00195522488296139!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00197294614589501!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00198446121953864!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00198446121953864!GO:0008283;cell proliferation;0.00198446121953864!GO:0009117;nucleotide metabolic process;0.00206471519744871!GO:0046983;protein dimerization activity;0.00208788354965371!GO:0043068;positive regulation of programmed cell death;0.00208788354965371!GO:0005762;mitochondrial large ribosomal subunit;0.00215809409497076!GO:0000315;organellar large ribosomal subunit;0.00215809409497076!GO:0004004;ATP-dependent RNA helicase activity;0.00226453700186767!GO:0030119;AP-type membrane coat adaptor complex;0.00249539312322346!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00271113225502552!GO:0030663;COPI coated vesicle membrane;0.00271991700737565!GO:0030126;COPI vesicle coat;0.00271991700737565!GO:0009108;coenzyme biosynthetic process;0.00278688192800942!GO:0051252;regulation of RNA metabolic process;0.00285352359644229!GO:0019222;regulation of metabolic process;0.00293727328852733!GO:0044437;vacuolar part;0.00314014610094981!GO:0051338;regulation of transferase activity;0.003259541751981!GO:0031902;late endosome membrane;0.003259541751981!GO:0006281;DNA repair;0.0033450809215107!GO:0030658;transport vesicle membrane;0.00350682068363705!GO:0051101;regulation of DNA binding;0.00352421278583259!GO:0030132;clathrin coat of coated pit;0.00369620939914328!GO:0016779;nucleotidyltransferase activity;0.00374092808084391!GO:0001666;response to hypoxia;0.00374584919379034!GO:0007050;cell cycle arrest;0.00387207285047781!GO:0008047;enzyme activator activity;0.00408869549372736!GO:0009615;response to virus;0.0041194269394719!GO:0005765;lysosomal membrane;0.00458257252127815!GO:0008234;cysteine-type peptidase activity;0.00458653890993787!GO:0048500;signal recognition particle;0.00474682206593842!GO:0000314;organellar small ribosomal subunit;0.00482451832676777!GO:0005763;mitochondrial small ribosomal subunit;0.00482451832676777!GO:0045893;positive regulation of transcription, DNA-dependent;0.00500429136243039!GO:0030131;clathrin adaptor complex;0.00518918558848162!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00525178676405885!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00525178676405885!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00525178676405885!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00536233359009567!GO:0043549;regulation of kinase activity;0.00555186688367962!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0055962369638662!GO:0051235;maintenance of localization;0.00561193073075002!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00563217791559942!GO:0030659;cytoplasmic vesicle membrane;0.00564165785085595!GO:0007033;vacuole organization and biogenesis;0.00566258479098757!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00566258479098757!GO:0005694;chromosome;0.00571901493517196!GO:0030521;androgen receptor signaling pathway;0.00580135327403706!GO:0051168;nuclear export;0.00583357252447883!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00589663000336263!GO:0048487;beta-tubulin binding;0.00608694474028486!GO:0006897;endocytosis;0.00610332403878664!GO:0010324;membrane invagination;0.00610332403878664!GO:0006402;mRNA catabolic process;0.00618476108021389!GO:0030695;GTPase regulator activity;0.00627852474304447!GO:0007040;lysosome organization and biogenesis;0.00627852474304447!GO:0006650;glycerophospholipid metabolic process;0.00679808130549622!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0069137817717505!GO:0030127;COPII vesicle coat;0.0069137817717505!GO:0012507;ER to Golgi transport vesicle membrane;0.0069137817717505!GO:0030134;ER to Golgi transport vesicle;0.00709835982947602!GO:0015980;energy derivation by oxidation of organic compounds;0.00709835982947602!GO:0043681;protein import into mitochondrion;0.00717452804656976!GO:0006414;translational elongation;0.00732665827870328!GO:0044427;chromosomal part;0.00777218540378587!GO:0030384;phosphoinositide metabolic process;0.00779318439202676!GO:0031072;heat shock protein binding;0.00785434890233491!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00792259931619997!GO:0030137;COPI-coated vesicle;0.00817381555931525!GO:0043488;regulation of mRNA stability;0.00817381555931525!GO:0043487;regulation of RNA stability;0.00817381555931525!GO:0007266;Rho protein signal transduction;0.00817381555931525!GO:0045941;positive regulation of transcription;0.00851159250073376!GO:0030027;lamellipodium;0.00853194674913694!GO:0051087;chaperone binding;0.00886912628371834!GO:0045859;regulation of protein kinase activity;0.00896301382557603!GO:0007010;cytoskeleton organization and biogenesis;0.00916680113726226!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00930106612171934!GO:0045047;protein targeting to ER;0.00930106612171934!GO:0007167;enzyme linked receptor protein signaling pathway;0.00951402600511983!GO:0032507;maintenance of cellular protein localization;0.00997848181691999!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0100066503864799!GO:0022890;inorganic cation transmembrane transporter activity;0.0106539007059183!GO:0017166;vinculin binding;0.010858792073525!GO:0030660;Golgi-associated vesicle membrane;0.0112819984419748!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0113389458706907!GO:0005912;adherens junction;0.0115995868608601!GO:0008632;apoptotic program;0.0117382818202752!GO:0045045;secretory pathway;0.012525387749469!GO:0033673;negative regulation of kinase activity;0.0126832055524208!GO:0006469;negative regulation of protein kinase activity;0.0126832055524208!GO:0000786;nucleosome;0.0127081991340181!GO:0030041;actin filament polymerization;0.0136576124241759!GO:0035258;steroid hormone receptor binding;0.0139647584247093!GO:0006509;membrane protein ectodomain proteolysis;0.0140070499396133!GO:0033619;membrane protein proteolysis;0.0140070499396133!GO:0031418;L-ascorbic acid binding;0.0140743288518385!GO:0005099;Ras GTPase activator activity;0.0147362192829132!GO:0031901;early endosome membrane;0.0150542631952863!GO:0030833;regulation of actin filament polymerization;0.0151293100358004!GO:0008312;7S RNA binding;0.0151302616798002!GO:0003711;transcription elongation regulator activity;0.0154479560699768!GO:0051336;regulation of hydrolase activity;0.0154997541789224!GO:0044433;cytoplasmic vesicle part;0.0155208711029375!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0155208711029375!GO:0046822;regulation of nucleocytoplasmic transport;0.0156483563992994!GO:0030125;clathrin vesicle coat;0.015986186967672!GO:0030665;clathrin coated vesicle membrane;0.015986186967672!GO:0006818;hydrogen transport;0.0160606551420171!GO:0006839;mitochondrial transport;0.0162897991551487!GO:0031529;ruffle organization and biogenesis;0.01681160686546!GO:0006401;RNA catabolic process;0.0170703641458707!GO:0006626;protein targeting to mitochondrion;0.0176883620435631!GO:0045185;maintenance of protein localization;0.0182013158869425!GO:0051098;regulation of binding;0.0184144788469016!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0185674484578076!GO:0016491;oxidoreductase activity;0.0186581420304989!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.018680685940149!GO:0046489;phosphoinositide biosynthetic process;0.0199097319566094!GO:0043022;ribosome binding;0.0199675790851118!GO:0016363;nuclear matrix;0.0203758221837039!GO:0046474;glycerophospholipid biosynthetic process;0.0204539468885208!GO:0012506;vesicle membrane;0.020872198449477!GO:0015992;proton transport;0.021057855599471!GO:0030518;steroid hormone receptor signaling pathway;0.0210930668050147!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0211492413935637!GO:0051270;regulation of cell motility;0.0213573262135591!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0215643461995923!GO:0015002;heme-copper terminal oxidase activity;0.0215643461995923!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0215643461995923!GO:0004129;cytochrome-c oxidase activity;0.0215643461995923!GO:0044262;cellular carbohydrate metabolic process;0.0221160193912281!GO:0045936;negative regulation of phosphate metabolic process;0.0223472692922281!GO:0001725;stress fiber;0.0226070726777153!GO:0032432;actin filament bundle;0.0226070726777153!GO:0006518;peptide metabolic process;0.02271046862031!GO:0032940;secretion by cell;0.023147182447928!GO:0003899;DNA-directed RNA polymerase activity;0.0233323014775986!GO:0004860;protein kinase inhibitor activity;0.0236999412045523!GO:0005096;GTPase activator activity;0.0241608094116939!GO:0016860;intramolecular oxidoreductase activity;0.0243461897776094!GO:0051128;regulation of cellular component organization and biogenesis;0.0244583088287278!GO:0006979;response to oxidative stress;0.0245408370127024!GO:0005869;dynactin complex;0.0245798196932405!GO:0050811;GABA receptor binding;0.0248164759362225!GO:0008610;lipid biosynthetic process;0.024850064687!GO:0050681;androgen receptor binding;0.024850064687!GO:0000278;mitotic cell cycle;0.024850064687!GO:0051651;maintenance of cellular localization;0.0248719511216598!GO:0043087;regulation of GTPase activity;0.0248719511216598!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0248719511216598!GO:0006917;induction of apoptosis;0.0248836622028529!GO:0031625;ubiquitin protein ligase binding;0.0251000938208771!GO:0051348;negative regulation of transferase activity;0.0254963669975234!GO:0005520;insulin-like growth factor binding;0.0256026882024916!GO:0006984;ER-nuclear signaling pathway;0.0256026882024916!GO:0007030;Golgi organization and biogenesis;0.0256026882024916!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0257223708772936!GO:0015399;primary active transmembrane transporter activity;0.0257223708772936!GO:0018193;peptidyl-amino acid modification;0.0263923571331328!GO:0048144;fibroblast proliferation;0.0266084860289499!GO:0048145;regulation of fibroblast proliferation;0.0266084860289499!GO:0005684;U2-dependent spliceosome;0.0283660186355382!GO:0046519;sphingoid metabolic process;0.0290593134737557!GO:0030968;unfolded protein response;0.0290815411780219!GO:0051325;interphase;0.0296733190645984!GO:0022415;viral reproductive process;0.0307017047095773!GO:0006611;protein export from nucleus;0.0311315060226299!GO:0019838;growth factor binding;0.0313459863858004!GO:0001527;microfibril;0.0314181926933593!GO:0003690;double-stranded DNA binding;0.0316397980053227!GO:0006354;RNA elongation;0.0320529856680499!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.032176113288154!GO:0008637;apoptotic mitochondrial changes;0.0324251283162838!GO:0007034;vacuolar transport;0.0324534421085521!GO:0012502;induction of programmed cell death;0.0328967663470214!GO:0006672;ceramide metabolic process;0.0336171225377401!GO:0048146;positive regulation of fibroblast proliferation;0.0343028640558254!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0346168995223024!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0346168995223024!GO:0045947;negative regulation of translational initiation;0.0349423636221029!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0350711480873625!GO:0004563;beta-N-acetylhexosaminidase activity;0.0353151624928513!GO:0006352;transcription initiation;0.0363517691254436!GO:0051329;interphase of mitotic cell cycle;0.0367826634842468!GO:0006701;progesterone biosynthetic process;0.0368294938591928!GO:0008139;nuclear localization sequence binding;0.0369913086328984!GO:0042326;negative regulation of phosphorylation;0.0377311935323806!GO:0043560;insulin receptor substrate binding;0.0382665869200917!GO:0003779;actin binding;0.0390789096313042!GO:0031543;peptidyl-proline dioxygenase activity;0.0390789096313042!GO:0060179;male mating behavior;0.0390789096313042!GO:0007619;courtship behavior;0.0390789096313042!GO:0008049;male courtship behavior;0.0390789096313042!GO:0001944;vasculature development;0.0393148962237575!GO:0008147;structural constituent of bone;0.0398972422598676!GO:0007006;mitochondrial membrane organization and biogenesis;0.0398972422598676!GO:0008180;signalosome;0.0400327077616889!GO:0043433;negative regulation of transcription factor activity;0.0400458637286872!GO:0046426;negative regulation of JAK-STAT cascade;0.0406708853265327!GO:0030433;ER-associated protein catabolic process;0.0411005712673202!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0411005712673202!GO:0006595;polyamine metabolic process;0.0412559056580299!GO:0046966;thyroid hormone receptor binding;0.0423036994213585!GO:0045792;negative regulation of cell size;0.042423520444558!GO:0031589;cell-substrate adhesion;0.042423520444558!GO:0030880;RNA polymerase complex;0.0426934324271778!GO:0045767;regulation of anti-apoptosis;0.0431152605840781!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0443861503243969!GO:0006091;generation of precursor metabolites and energy;0.0443861503243969!GO:0006487;protein amino acid N-linked glycosylation;0.0448169201834373!GO:0046578;regulation of Ras protein signal transduction;0.0453835400517995!GO:0016272;prefoldin complex;0.0457932939191355!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0466026160863527!GO:0004784;superoxide dismutase activity;0.0466026160863527!GO:0006508;proteolysis;0.0468659903559477!GO:0051051;negative regulation of transport;0.047548691917827!GO:0009165;nucleotide biosynthetic process;0.0476854229758179!GO:0005832;chaperonin-containing T-complex;0.0479285818652621!GO:0006026;aminoglycan catabolic process;0.0482419767057138!GO:0006027;glycosaminoglycan catabolic process;0.0482419767057138!GO:0046467;membrane lipid biosynthetic process;0.0482899373223492!GO:0030308;negative regulation of cell growth;0.0483297918569356!GO:0006376;mRNA splice site selection;0.0483297918569356!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0483297918569356!GO:0030522;intracellular receptor-mediated signaling pathway;0.0485897272192982!GO:0001568;blood vessel development;0.0487266153149126!GO:0043284;biopolymer biosynthetic process;0.0487266153149126!GO:0051220;cytoplasmic sequestering of protein;0.0487266153149126!GO:0003756;protein disulfide isomerase activity;0.0488610341849731!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0488610341849731!GO:0005784;translocon complex;0.0493022961278684!GO:0016791;phosphoric monoester hydrolase activity;0.049517772749144!GO:0051223;regulation of protein transport;0.0495363146541985!GO:0005813;centrosome;0.0496200628961501!GO:0004197;cysteine-type endopeptidase activity;0.0498180634648709 | |||
|sample_id=12238 | |sample_id=12238 | ||
|sample_note=Jan 20 librarian | |sample_note=Jan 20 librarian | ||
| Line 76: | Line 100: | ||
|sample_tissue=chorion | |sample_tissue=chorion | ||
|top_motifs=TBP:2.73073012677;XCPE1{core}:1.97654676883;NKX2-1,4:1.93749128658;PPARG:1.88372064424;FOXL1:1.86425588661;SP1:1.67424566782;HIF1A:1.6520386884;GLI1..3:1.6404378915;EP300:1.57293088428;GCM1,2:1.50525981033;FOXO1,3,4:1.47603980561;SNAI1..3:1.42543803181;IKZF1:1.3489326172;HMX1:1.26789468992;POU2F1..3:1.24428758457;ZNF148:1.2161413389;EN1,2:1.19102742466;TBX4,5:1.17749321951;FOX{D1,D2}:1.16649188227;ALX4:1.13301002155;RXRA_VDR{dimer}:1.13170466913;CDC5L:1.12007599353;EBF1:1.11881151086;TEAD1:1.11568227401;PAX4:1.01397536113;TFAP2{A,C}:0.95770131824;STAT2,4,6:0.951995053748;HSF1,2:0.937945146972;UFEwm:0.882142362415;NR1H4:0.850991902865;MAZ:0.842505921536;BPTF:0.835326574869;GZF1:0.796638431524;RORA:0.790686194377;FOS_FOS{B,L1}_JUN{B,D}:0.762766475246;TLX2:0.732381804798;BACH2:0.720347746636;MYBL2:0.707767039671;IRF7:0.644893899198;ZNF238:0.633937665685;FOXM1:0.591690804803;FOXN1:0.588491126987;ZEB1:0.582318416451;SRF:0.575824327572;PAX8:0.571153095064;ATF6:0.546255799016;JUN:0.499692426364;HOXA9_MEIS1:0.497767037935;HOX{A6,A7,B6,B7}:0.490190925012;T:0.480739764641;FOSL2:0.440281989119;HLF:0.438483636912;SMAD1..7,9:0.437418975533;SPZ1:0.400247084461;MAFB:0.395049982201;HES1:0.388002031562;TFCP2:0.384490854873;AR:0.372189648324;NFE2:0.336278715747;ESR1:0.332187794917;POU3F1..4:0.328186517064;MYOD1:0.317936062972;GATA6:0.317080104022;FOXP3:0.310548109389;MED-1{core}:0.30070384562;TP53:0.288796104274;XBP1:0.269987935501;IRF1,2:0.254135714496;HNF1A:0.252412781309;NFKB1_REL_RELA:0.238756865913;ZBTB6:0.235779071553;bHLH_family:0.229034370349;NKX3-1:0.223192908785;NFIL3:0.17684291301;EVI1:0.160733373732;VSX1,2:0.154985556582;FOX{I1,J2}:0.149476707433;NFATC1..3:0.102388638378;AIRE:0.10037501643;EGR1..3:0.0994175192617;CREB1:0.0804497625889;POU1F1:0.0422435989814;ATF5_CREB3:0.0297110180498;GTF2I:0.0228529463062;GTF2A1,2:0.0183682501368;HBP1_HMGB_SSRP1_UBTF:0.0127848718508;PAX1,9:-0.011860514885;TFAP4:-0.0140780525398;SOX5:-0.0263739468292;POU6F1:-0.039217899805;PATZ1:-0.053930912869;SOX17:-0.0589761654464;TFAP2B:-0.0650736582644;MEF2{A,B,C,D}:-0.0975255862581;MTF1:-0.102442353372;ATF4:-0.125731103768;HIC1:-0.129189854776;ATF2:-0.138269999445;HAND1,2:-0.140052597106;ONECUT1,2:-0.144450518549;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.147755577261;SPI1:-0.175949580988;FOXQ1:-0.187332228581;PAX2:-0.197057583145;NR6A1:-0.208035261947;STAT5{A,B}:-0.214575424433;SREBF1,2:-0.214662579846;NFY{A,B,C}:-0.217431893704;RUNX1..3:-0.228002700295;RFX2..5_RFXANK_RFXAP:-0.230067873024;NKX2-2,8:-0.233218971026;ZNF423:-0.268533157885;TAL1_TCF{3,4,12}:-0.271291309543;ETS1,2:-0.273703826796;MTE{core}:-0.314060341997;ARID5B:-0.316830142526;NKX3-2:-0.348152854541;ESRRA:-0.366102630047;KLF4:-0.372099123306;TLX1..3_NFIC{dimer}:-0.380968270196;ZIC1..3:-0.388243541878;RFX1:-0.404437066783;HOX{A4,D4}:-0.405682537829;CEBPA,B_DDIT3:-0.406787249635;MYFfamily:-0.413382416267;ELK1,4_GABP{A,B1}:-0.420818845728;PITX1..3:-0.4392287487;REST:-0.459766516797;RXR{A,B,G}:-0.460746505642;PAX5:-0.48332964805;HNF4A_NR2F1,2:-0.486635075216;ADNP_IRX_SIX_ZHX:-0.505454157913;ZFP161:-0.512039048569;SPIB:-0.51398530524;TOPORS:-0.521989299132;MZF1:-0.527864946167;NR3C1:-0.573994361477;OCT4_SOX2{dimer}:-0.586311571098;HMGA1,2:-0.586856769736;FOX{F1,F2,J1}:-0.589910912956;ELF1,2,4:-0.59133828656;PAX3,7:-0.622238396813;HOX{A5,B5}:-0.638667340054;NANOG{mouse}:-0.643952035367;TGIF1:-0.64629868443;ZNF143:-0.653420187659;ZNF384:-0.659220234547;STAT1,3:-0.70131636348;LEF1_TCF7_TCF7L1,2:-0.702397439956;CUX2:-0.727544553757;GATA4:-0.743375286809;FOXP1:-0.756775493566;PRRX1,2:-0.768217971276;NKX2-3_NKX2-5:-0.768407357389;GFI1:-0.782603604599;PRDM1:-0.808919953077;RREB1:-0.823216563452;NHLH1,2:-0.827271365415;SOX2:-0.83399620701;GFI1B:-0.845640976741;TEF:-0.852823990695;NFE2L2:-0.856366553079;DBP:-0.85711201111;SOX{8,9,10}:-0.860830527636;RBPJ:-0.893499535625;MYB:-0.904261392626;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.947385194818;ZBTB16:-0.954734935171;IKZF2:-0.982334592421;DMAP1_NCOR{1,2}_SMARC:-0.989261621394;NFE2L1:-1.01306440469;NRF1:-1.01994017457;E2F1..5:-1.02150436251;PBX1:-1.0634877983;LMO2:-1.14234093442;PAX6:-1.15128333574;ALX1:-1.15481815007;TFDP1:-1.1630374165;AHR_ARNT_ARNT2:-1.166252533;YY1:-1.34540182023;LHX3,4:-1.41504282105;CRX:-1.47458430854;BREu{core}:-1.50720819004;CDX1,2,4:-1.51511484171;PDX1:-1.55321519772;NANOG:-1.58948056816;FOXA2:-1.62797963046;NR5A1,2:-1.74348262463;FOXD3:-1.75006326247;NFIX:-1.9153534572;NKX6-1,2:-2.05699652942;POU5F1:-2.64976984371 | |top_motifs=TBP:2.73073012677;XCPE1{core}:1.97654676883;NKX2-1,4:1.93749128658;PPARG:1.88372064424;FOXL1:1.86425588661;SP1:1.67424566782;HIF1A:1.6520386884;GLI1..3:1.6404378915;EP300:1.57293088428;GCM1,2:1.50525981033;FOXO1,3,4:1.47603980561;SNAI1..3:1.42543803181;IKZF1:1.3489326172;HMX1:1.26789468992;POU2F1..3:1.24428758457;ZNF148:1.2161413389;EN1,2:1.19102742466;TBX4,5:1.17749321951;FOX{D1,D2}:1.16649188227;ALX4:1.13301002155;RXRA_VDR{dimer}:1.13170466913;CDC5L:1.12007599353;EBF1:1.11881151086;TEAD1:1.11568227401;PAX4:1.01397536113;TFAP2{A,C}:0.95770131824;STAT2,4,6:0.951995053748;HSF1,2:0.937945146972;UFEwm:0.882142362415;NR1H4:0.850991902865;MAZ:0.842505921536;BPTF:0.835326574869;GZF1:0.796638431524;RORA:0.790686194377;FOS_FOS{B,L1}_JUN{B,D}:0.762766475246;TLX2:0.732381804798;BACH2:0.720347746636;MYBL2:0.707767039671;IRF7:0.644893899198;ZNF238:0.633937665685;FOXM1:0.591690804803;FOXN1:0.588491126987;ZEB1:0.582318416451;SRF:0.575824327572;PAX8:0.571153095064;ATF6:0.546255799016;JUN:0.499692426364;HOXA9_MEIS1:0.497767037935;HOX{A6,A7,B6,B7}:0.490190925012;T:0.480739764641;FOSL2:0.440281989119;HLF:0.438483636912;SMAD1..7,9:0.437418975533;SPZ1:0.400247084461;MAFB:0.395049982201;HES1:0.388002031562;TFCP2:0.384490854873;AR:0.372189648324;NFE2:0.336278715747;ESR1:0.332187794917;POU3F1..4:0.328186517064;MYOD1:0.317936062972;GATA6:0.317080104022;FOXP3:0.310548109389;MED-1{core}:0.30070384562;TP53:0.288796104274;XBP1:0.269987935501;IRF1,2:0.254135714496;HNF1A:0.252412781309;NFKB1_REL_RELA:0.238756865913;ZBTB6:0.235779071553;bHLH_family:0.229034370349;NKX3-1:0.223192908785;NFIL3:0.17684291301;EVI1:0.160733373732;VSX1,2:0.154985556582;FOX{I1,J2}:0.149476707433;NFATC1..3:0.102388638378;AIRE:0.10037501643;EGR1..3:0.0994175192617;CREB1:0.0804497625889;POU1F1:0.0422435989814;ATF5_CREB3:0.0297110180498;GTF2I:0.0228529463062;GTF2A1,2:0.0183682501368;HBP1_HMGB_SSRP1_UBTF:0.0127848718508;PAX1,9:-0.011860514885;TFAP4:-0.0140780525398;SOX5:-0.0263739468292;POU6F1:-0.039217899805;PATZ1:-0.053930912869;SOX17:-0.0589761654464;TFAP2B:-0.0650736582644;MEF2{A,B,C,D}:-0.0975255862581;MTF1:-0.102442353372;ATF4:-0.125731103768;HIC1:-0.129189854776;ATF2:-0.138269999445;HAND1,2:-0.140052597106;ONECUT1,2:-0.144450518549;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.147755577261;SPI1:-0.175949580988;FOXQ1:-0.187332228581;PAX2:-0.197057583145;NR6A1:-0.208035261947;STAT5{A,B}:-0.214575424433;SREBF1,2:-0.214662579846;NFY{A,B,C}:-0.217431893704;RUNX1..3:-0.228002700295;RFX2..5_RFXANK_RFXAP:-0.230067873024;NKX2-2,8:-0.233218971026;ZNF423:-0.268533157885;TAL1_TCF{3,4,12}:-0.271291309543;ETS1,2:-0.273703826796;MTE{core}:-0.314060341997;ARID5B:-0.316830142526;NKX3-2:-0.348152854541;ESRRA:-0.366102630047;KLF4:-0.372099123306;TLX1..3_NFIC{dimer}:-0.380968270196;ZIC1..3:-0.388243541878;RFX1:-0.404437066783;HOX{A4,D4}:-0.405682537829;CEBPA,B_DDIT3:-0.406787249635;MYFfamily:-0.413382416267;ELK1,4_GABP{A,B1}:-0.420818845728;PITX1..3:-0.4392287487;REST:-0.459766516797;RXR{A,B,G}:-0.460746505642;PAX5:-0.48332964805;HNF4A_NR2F1,2:-0.486635075216;ADNP_IRX_SIX_ZHX:-0.505454157913;ZFP161:-0.512039048569;SPIB:-0.51398530524;TOPORS:-0.521989299132;MZF1:-0.527864946167;NR3C1:-0.573994361477;OCT4_SOX2{dimer}:-0.586311571098;HMGA1,2:-0.586856769736;FOX{F1,F2,J1}:-0.589910912956;ELF1,2,4:-0.59133828656;PAX3,7:-0.622238396813;HOX{A5,B5}:-0.638667340054;NANOG{mouse}:-0.643952035367;TGIF1:-0.64629868443;ZNF143:-0.653420187659;ZNF384:-0.659220234547;STAT1,3:-0.70131636348;LEF1_TCF7_TCF7L1,2:-0.702397439956;CUX2:-0.727544553757;GATA4:-0.743375286809;FOXP1:-0.756775493566;PRRX1,2:-0.768217971276;NKX2-3_NKX2-5:-0.768407357389;GFI1:-0.782603604599;PRDM1:-0.808919953077;RREB1:-0.823216563452;NHLH1,2:-0.827271365415;SOX2:-0.83399620701;GFI1B:-0.845640976741;TEF:-0.852823990695;NFE2L2:-0.856366553079;DBP:-0.85711201111;SOX{8,9,10}:-0.860830527636;RBPJ:-0.893499535625;MYB:-0.904261392626;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.947385194818;ZBTB16:-0.954734935171;IKZF2:-0.982334592421;DMAP1_NCOR{1,2}_SMARC:-0.989261621394;NFE2L1:-1.01306440469;NRF1:-1.01994017457;E2F1..5:-1.02150436251;PBX1:-1.0634877983;LMO2:-1.14234093442;PAX6:-1.15128333574;ALX1:-1.15481815007;TFDP1:-1.1630374165;AHR_ARNT_ARNT2:-1.166252533;YY1:-1.34540182023;LHX3,4:-1.41504282105;CRX:-1.47458430854;BREu{core}:-1.50720819004;CDX1,2,4:-1.51511484171;PDX1:-1.55321519772;NANOG:-1.58948056816;FOXA2:-1.62797963046;NR5A1,2:-1.74348262463;FOXD3:-1.75006326247;NFIX:-1.9153534572;NKX6-1,2:-2.05699652942;POU5F1:-2.64976984371 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12238-129G6;search_select_hide=table117:FF:12238-129G6 | |||
}} | }} | ||
Latest revision as of 18:36, 4 June 2020
| Name: | chorionic membrane cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12504 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12504
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12504
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.868 |
| 10 | 10 | 0.793 |
| 100 | 100 | 0.727 |
| 101 | 101 | 0.24 |
| 102 | 102 | 0.686 |
| 103 | 103 | 0.323 |
| 104 | 104 | 0.801 |
| 105 | 105 | 0.188 |
| 106 | 106 | 0.0023 |
| 107 | 107 | 0.0101 |
| 108 | 108 | 0.0511 |
| 109 | 109 | 0.00939 |
| 11 | 11 | 0.795 |
| 110 | 110 | 0.267 |
| 111 | 111 | 0.225 |
| 112 | 112 | 0.33 |
| 113 | 113 | 9.02951e-4 |
| 114 | 114 | 0.928 |
| 115 | 115 | 0.87 |
| 116 | 116 | 0.817 |
| 117 | 117 | 0.269 |
| 118 | 118 | 0.074 |
| 119 | 119 | 0.451 |
| 12 | 12 | 0.629 |
| 120 | 120 | 0.206 |
| 121 | 121 | 0.673 |
| 122 | 122 | 0.908 |
| 123 | 123 | 0.0146 |
| 124 | 124 | 0.0374 |
| 125 | 125 | 0.878 |
| 126 | 126 | 0.193 |
| 127 | 127 | 0.395 |
| 128 | 128 | 0.53 |
| 129 | 129 | 0.764 |
| 13 | 13 | 0.21 |
| 130 | 130 | 0.392 |
| 131 | 131 | 0.389 |
| 132 | 132 | 0.384 |
| 133 | 133 | 0.114 |
| 134 | 134 | 0.153 |
| 135 | 135 | 0.632 |
| 136 | 136 | 0.019 |
| 137 | 137 | 0.457 |
| 138 | 138 | 0.989 |
| 139 | 139 | 0.842 |
| 14 | 14 | 0.747 |
| 140 | 140 | 0.522 |
| 141 | 141 | 0.377 |
| 142 | 142 | 0.609 |
| 143 | 143 | 0.462 |
| 144 | 144 | 0.541 |
| 145 | 145 | 0.685 |
| 146 | 146 | 0.434 |
| 147 | 147 | 0.858 |
| 148 | 148 | 0.892 |
| 149 | 149 | 0.392 |
| 15 | 15 | 0.915 |
| 150 | 150 | 0.11 |
| 151 | 151 | 0.188 |
| 152 | 152 | 0.0102 |
| 153 | 153 | 0.63 |
| 154 | 154 | 0.722 |
| 155 | 155 | 0.131 |
| 156 | 156 | 0.874 |
| 157 | 157 | 0.739 |
| 158 | 158 | 0.174 |
| 159 | 159 | 0.61 |
| 16 | 16 | 0.0381 |
| 160 | 160 | 0.355 |
| 161 | 161 | 0.846 |
| 162 | 162 | 0.721 |
| 163 | 163 | 0.101 |
| 164 | 164 | 0.608 |
| 165 | 165 | 0.589 |
| 166 | 166 | 0.64 |
| 167 | 167 | 0.161 |
| 168 | 168 | 0.932 |
| 169 | 169 | 0.0849 |
| 17 | 17 | 0.161 |
| 18 | 18 | 0.887 |
| 19 | 19 | 0.139 |
| 2 | 2 | 0.192 |
| 20 | 20 | 0.704 |
| 21 | 21 | 0.363 |
| 22 | 22 | 0.183 |
| 23 | 23 | 0.0536 |
| 24 | 24 | 0.946 |
| 25 | 25 | 0.8 |
| 26 | 26 | 0.451 |
| 27 | 27 | 0.785 |
| 28 | 28 | 0.94 |
| 29 | 29 | 0.368 |
| 3 | 3 | 0.616 |
| 30 | 30 | 0.107 |
| 31 | 31 | 0.702 |
| 32 | 32 | 0.0759 |
| 33 | 33 | 0.529 |
| 34 | 34 | 0.896 |
| 35 | 35 | 0.272 |
| 36 | 36 | 0.606 |
| 37 | 37 | 0.254 |
| 38 | 38 | 0.747 |
| 39 | 39 | 0.155 |
| 4 | 4 | 0.522 |
| 40 | 40 | 0.131 |
| 41 | 41 | 0.465 |
| 42 | 42 | 0.736 |
| 43 | 43 | 0.476 |
| 44 | 44 | 0.595 |
| 45 | 45 | 0.0352 |
| 46 | 46 | 0.859 |
| 47 | 47 | 0.393 |
| 48 | 48 | 0.979 |
| 49 | 49 | 0.794 |
| 5 | 5 | 0.855 |
| 50 | 50 | 0.324 |
| 51 | 51 | 0.917 |
| 52 | 52 | 0.127 |
| 53 | 53 | 0.295 |
| 54 | 54 | 0.953 |
| 55 | 55 | 0.36 |
| 56 | 56 | 0.647 |
| 57 | 57 | 0.714 |
| 58 | 58 | 0.852 |
| 59 | 59 | 0.354 |
| 6 | 6 | 0.996 |
| 60 | 60 | 0.144 |
| 61 | 61 | 0.376 |
| 62 | 62 | 0.954 |
| 63 | 63 | 0.611 |
| 64 | 64 | 0.77 |
| 65 | 65 | 0.409 |
| 66 | 66 | 0.406 |
| 67 | 67 | 0.688 |
| 68 | 68 | 0.536 |
| 69 | 69 | 0.308 |
| 7 | 7 | 0.371 |
| 70 | 70 | 0.203 |
| 71 | 71 | 0.971 |
| 72 | 72 | 0.287 |
| 73 | 73 | 0.015 |
| 74 | 74 | 0.463 |
| 75 | 75 | 0.364 |
| 76 | 76 | 0.734 |
| 77 | 77 | 0.0283 |
| 78 | 78 | 0.533 |
| 79 | 79 | 0.71 |
| 8 | 8 | 0.766 |
| 80 | 80 | 0.802 |
| 81 | 81 | 0.578 |
| 82 | 82 | 0.767 |
| 83 | 83 | 0.884 |
| 84 | 84 | 0.152 |
| 85 | 85 | 0.0472 |
| 86 | 86 | 0.943 |
| 87 | 87 | 0.655 |
| 88 | 88 | 0.566 |
| 89 | 89 | 0.577 |
| 9 | 9 | 0.677 |
| 90 | 90 | 0.448 |
| 91 | 91 | 0.715 |
| 92 | 92 | 0.906 |
| 93 | 93 | 0.825 |
| 94 | 94 | 0.894 |
| 95 | 95 | 0.144 |
| 96 | 96 | 0.727 |
| 97 | 97 | 0.143 |
| 98 | 98 | 0.95 |
| 99 | 99 | 0.98 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12504
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000038 human chorionic membrane stem cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002541 (chorionic membrane mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000476 (acellular anatomical structure)
0000478 (extraembryonic structure)
0000158 (membranous layer)
0003124 (chorion)
0000920 (egg chorion)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000038 (human chorionic membrane stem cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
